Your job contains 1 sequence.
>023583
MAASTVSMAASSSLCNKLYNLQAITQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLL
SLSYFRQFSASFDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNL
PYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG
GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP
GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023583
(280 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 654 3.7e-64 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 360 5.2e-33 1
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 340 6.9e-31 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 335 2.3e-30 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 320 9.1e-29 1
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 310 1.0e-27 1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 286 3.6e-25 1
TAIR|locus:2200975 - symbol:AT1G01080 species:3702 "Arabi... 279 2.0e-24 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 244 4.8e-20 1
POMBASE|SPAC328.05 - symbol:SPAC328.05 "RNA-binding prote... 155 2.0e-17 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 222 2.2e-17 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 217 7.5e-17 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 207 8.6e-17 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 203 2.3e-16 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 209 2.7e-16 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 210 4.2e-16 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 199 6.0e-16 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 198 7.7e-16 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 207 9.0e-16 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 207 9.8e-16 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 197 9.8e-16 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 202 9.8e-16 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 205 1.0e-15 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 202 1.2e-15 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 206 1.3e-15 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 201 1.4e-15 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 201 1.4e-15 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 205 1.5e-15 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 205 1.5e-15 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 204 1.8e-15 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 198 1.8e-15 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 201 2.9e-15 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 194 3.7e-15 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 194 4.5e-15 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 194 6.3e-15 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 197 6.8e-15 1
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G... 199 7.6e-15 1
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G... 199 7.6e-15 1
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G... 199 7.7e-15 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 195 8.2e-15 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 198 8.3e-15 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 198 8.4e-15 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 194 8.8e-15 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 197 1.1e-14 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 187 1.1e-14 1
ASPGD|ASPL0000078272 - symbol:AN4330 species:162425 "Emer... 197 1.3e-14 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 196 1.4e-14 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 195 1.6e-14 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 194 1.6e-14 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 195 1.6e-14 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 194 1.6e-14 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 194 1.6e-14 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 194 1.7e-14 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 195 1.8e-14 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 195 1.8e-14 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 195 1.8e-14 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 195 1.8e-14 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 195 1.8e-14 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 194 1.8e-14 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 194 1.8e-14 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 195 1.8e-14 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 194 1.8e-14 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 194 1.8e-14 1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 187 1.9e-14 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 193 2.9e-14 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 130 2.9e-14 2
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 190 3.4e-14 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 189 3.5e-14 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 192 3.7e-14 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 192 3.7e-14 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 192 3.7e-14 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 186 3.8e-14 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 191 4.0e-14 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 190 4.1e-14 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 192 4.4e-14 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 190 4.6e-14 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 190 4.7e-14 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 191 4.8e-14 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 191 4.8e-14 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 181 4.9e-14 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 192 5.0e-14 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 191 5.1e-14 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 190 5.8e-14 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 190 6.3e-14 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 186 6.6e-14 1
ASPGD|ASPL0000000406 - symbol:AN6501 species:162425 "Emer... 184 7.2e-14 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 189 7.8e-14 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 184 8.4e-14 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 188 8.8e-14 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 182 9.5e-14 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 185 9.6e-14 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 188 1.0e-13 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 188 1.0e-13 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 188 1.1e-13 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 187 1.2e-13 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 187 1.2e-13 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 184 1.3e-13 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 187 1.3e-13 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 187 1.3e-13 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 182 1.4e-13 1
WARNING: Descriptions of 1108 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 120/167 (71%), Positives = 147/167 (88%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLPY++TSS L+++F EAGTV +IVYD+VTDRSRGFGFVTMGS+EEAKEA+++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
F+ SQIGGRTVKVNFPEVPRGGE M K++++ + +VDSPHK+YAGNLGW LTSQGL+
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
DAF QPG+L AKVI+ER TGRSRGFGF++FE+AE++QSAL MNGV
Sbjct: 237 DAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGV 283
Score = 158 (60.7 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 27/74 (36%), Positives = 48/74 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++Y GNL +++TS L + F + V A+++Y+R T RSRGFGF++ S E + A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 174 FDGSQIGGRTVKVN 187
+G ++ GR +++N
Sbjct: 280 MNGVEVEGRALRLN 293
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 69/176 (39%), Positives = 117/176 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNLP+++ S+ LA++F AG V E++YD++T RSRGFGFVTM SV E + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 174 FDGSQIGGRTVKVNF-PEVPRGGERAAMGPKLQ--NSYQGF-------VDSPHKIYAGNL 223
F+G ++ GR ++VN P P+ + + GP+ +S G+ S +++Y GNL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
WG+ L F Q ++ A+VI++R +GRS+GFGFVT+++++++Q+A+ +++G
Sbjct: 212 SWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDG 267
Score = 179 (68.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 35/82 (42%), Positives = 53/82 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A ++YDR + RS+GFGFVT S +E + AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 174 FDGSQIGGRTVKVNFPEV--PR 193
DG+ + GR ++V+ E PR
Sbjct: 265 LDGADLDGRQIRVSEAEARPPR 286
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 71/167 (42%), Positives = 105/167 (62%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A+
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
F+ + GR + VN PRG R P++ Y+ ++Y GNL W + + L
Sbjct: 210 KFNRYDLNGRLLTVN-KAAPRGS-RPERAPRV---YE----PAFRVYVGNLPWDVDNGRL 260
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F ++ A+V+++R TGRSRGFGFVT ++L A+ A++G
Sbjct: 261 EQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 307
Score = 217 (81.4 bits), Expect = 7.6e-18, P = 7.6e-18
Identities = 44/86 (51%), Positives = 56/86 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI
Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Query: 172 RLFDGSQIGGRTVKVNFPEV--PRGG 195
DG + GR ++VN E PR G
Sbjct: 303 SALDGQNLEGRAIRVNVAEERPPRRG 328
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 72/167 (43%), Positives = 106/167 (63%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+L+VGNLPY + S +LA +F +AGTV +E++Y+R TD+SRGFGFVTM +VEEA++A+
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
F+ ++ GR + VN PRG R P++ Y D+ +IY GNL W + S L
Sbjct: 173 KFNSFEVNGRRLTVN-RAAPRGS-RPERQPRV---Y----DAAFRIYVGNLPWDVDSGRL 223
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F ++ A+V+ +R TGRSRGFGFV ++ A+ A++G
Sbjct: 224 ERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDG 270
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 39/79 (49%), Positives = 48/79 (60%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + S L +F+E G V A +V DR T RSRGFGFV M + E AI
Sbjct: 206 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAI 265
Query: 172 RLFDGSQIGGRTVKVNFPE 190
DG + GR +KVN E
Sbjct: 266 AALDGQNLEGRAIKVNVAE 284
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 66/167 (39%), Positives = 101/167 (60%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+Y+GN+P ++T+ L ++ E G V +++YD+ + RSR FGF TM SVE+A +
Sbjct: 75 ARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVV 134
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G+ + GR +KVN E P LQ+ FVDSP+K+Y GNL +T +
Sbjct: 135 EKLNGNTVEGREIKVNITEKPIASSPDLS--VLQSEDSAFVDSPYKVYVGNLAKTVTKEM 192
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L + F + ++SAKV T +S GFGFVTF + ED+++A+ A+N
Sbjct: 193 LENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALN 239
Score = 137 (53.3 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNL ++T L +F+E G V SA++ T +S GFGFVT S E+ + AI
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 174 FDGSQIGGRTVKVN 187
+ S + G+ ++VN
Sbjct: 238 LNNSLLEGQKIRVN 251
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 19/67 (28%), Positives = 41/67 (61%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
++ ++Y GN+ +T++ L + + +V++++Y+GRSR FGF T ++ ED +
Sbjct: 73 EAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANA 132
Query: 273 ALDAMNG 279
++ +NG
Sbjct: 133 VVEKLNG 139
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 62/166 (37%), Positives = 105/166 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+LY GNLPY++ S++LA++ + E++Y+R T +SRGF FVTM +VE+ I
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
DG++ GR +KVNF + P+ P + Y ++ HK++ GNL W +TS+ L
Sbjct: 146 LDGTEYLGRALKVNFADKPK--------PNKEPLYP---ETEHKLFVGNLSWTVTSESLA 194
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF+ ++ A+V+F+ TGRSRG+GFV + + ++++AL++++G
Sbjct: 195 GAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDG 240
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 34/77 (44%), Positives = 49/77 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNL +++TS SLA F E G V A +V+D T RSRG+GFV S E + A+
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 174 FDGSQIGGRTVKVNFPE 190
DG ++ GR ++VN +
Sbjct: 238 LDGFELEGRAIRVNLAQ 254
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 66/168 (39%), Positives = 99/168 (58%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+V NLP+SM+ + ++E+F + GTV + EI+ + ++RGF FVTM S EEA+ AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQK-DGKNRGFAFVTMASGEEAQAAIDK 154
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK-LQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
FD Q+ GR + V+F R + P L + G D+ HK+Y NL W S L
Sbjct: 155 FDTFQVSGRIISVSFAR--RFKKPTPKSPNDLPSPAPG--DTRHKLYVSNLAWKARSTHL 210
Query: 233 RDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R+ F +SA+V+F GRS G+GFV+F T E+ ++A+ +NG
Sbjct: 211 RELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNG 258
Score = 127 (49.8 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+LYV NL + S+ L E+F A SA +V+ RS G+GFV+ + EEA+ AI
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 173 LFDGSQIGGRTVKVNF 188
+G +I GR + + F
Sbjct: 255 KLNGKEIMGRPITLKF 270
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 66/169 (39%), Positives = 98/169 (57%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY-DRVTDRSRGFGFVTMGSVEEAKEAIRL 173
LYV N+P S + L ++F GTV S E+V + T SRG G+VTMGS+ AK AI
Sbjct: 110 LYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIAS 169
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFV---DSPHKIYAGNLGWGLTSQ 230
DG+++GGR ++V + G R P++ NS + +S HK+Y GNL W
Sbjct: 170 LDGTEVGGREMRVRYSVDMNPGTRR--NPEVLNSTPKKILMYESQHKVYVGNLPWFTQPD 227
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
GLR+ F ++S +V+ +R TGR+R F F++F + E+ +AL + NG
Sbjct: 228 GLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNG 275
Score = 132 (51.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/73 (38%), Positives = 45/73 (61%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVGNLP+ L F++ GT+ S +++DR T R+R F F++ S EE ++A
Sbjct: 214 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEE-RDAALS 272
Query: 174 FDGSQIGGRTVKV 186
F+G+Q GR + V
Sbjct: 273 FNGTQYEGRRIIV 285
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 244 (91.0 bits), Expect = 4.8e-20, P = 4.8e-20
Identities = 59/167 (35%), Positives = 92/167 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNL +++ + LAE F GTV SA ++ DR + RS+GFG+V + EEA++A
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWGLTSQGL 232
G+ I GR +KV+F A G + + Y G SP ++ GNL + +
Sbjct: 301 QGAFIDGREIKVDFSTGKATNSNDAAGARAKK-Y-GDTVSPESDTLFVGNLPFDADEDSV 358
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + S ++ E+ +GR +GFG+VTF + ED +SA + +NG
Sbjct: 359 GAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNG 405
Score = 151 (58.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/85 (37%), Positives = 48/85 (56%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNLP+ S+ F+E V S + ++ + R +GFG+VT SVE+AK A
Sbjct: 344 LFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQL 403
Query: 175 DGSQIGGRTVKVNF--PEVPR--GG 195
+G I GR ++++ P PR GG
Sbjct: 404 NGQSINGRNCRLDYSTPRPPREDGG 428
Score = 128 (50.1 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 29/92 (31%), Positives = 45/92 (48%)
Query: 182 RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 241
+ K P R E P + + D P ++ GNL W + L + F+
Sbjct: 206 KPAKTEAPSKKRKAEEEEEAPAKKTKTEES-DKPSTLFVGNLSWNVDDAMLAEEFKFCGT 264
Query: 242 LLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
+ SA+VI +R +GRS+GFG+V F T E+ + A
Sbjct: 265 VTSARVITDRESGRSKGFGYVDFATPEEAEKA 296
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 155 (59.6 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 44/168 (26%), Positives = 81/168 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL Y + L E + G V + EI+ + S+G + + EEA+ AI+
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAEEARTAIKT 136
Query: 174 FDGSQIGGRTVKV--NFPEVPRGGERAAMGPKLQNSYQGFVDSPHK-IYAGNLGWGLTSQ 230
+ GR V + + + R G +++ P ++ G P + ++ GNL + + Q
Sbjct: 137 LSNQKFMGRLVYIREDREQNARFGS-SSVSPSASSN--GKDSEPDRQLFVGNLPYNVRWQ 193
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L+D F+ ++ A + + GRSRG G V + ++ A+ ++
Sbjct: 194 DLKDLFRQAGSVIRADIQMNQ-EGRSRGIGIVVMSSMKEAMHAIQMLH 240
Score = 143 (55.4 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VGNLPY++ L ++F +AG+V A+I ++ RSRG G V M S++EA AI++
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQ-EGRSRGIGIVVMSSMKEAMHAIQM 238
Query: 174 FDGSQIGGRTVKV 186
+ GRT++V
Sbjct: 239 LHNTDFMGRTLEV 251
Score = 135 (52.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVGNLP++ + +L ++F + G+V A I Y+ T RS+GFG V + +A +I
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370
Query: 175 DGSQIGGRTVKVNF 188
+G + GGR +++++
Sbjct: 371 NGYRYGGRPLQLSY 384
Score = 128 (50.1 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
IY GNL W + + L D F ++ A++ +E TGRS+GFG V FE D S+++ +
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 370
Query: 278 NG 279
NG
Sbjct: 371 NG 372
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 222 (83.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 59/171 (34%), Positives = 87/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F+ G S +++ D T RSRGFGFV G+ EEA++A+
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + + R GE +++ N YQG +Y NL G+
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 307 DDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 54/165 (32%), Positives = 82/165 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E G K+ F + +Y N G + + LR+
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-LEYGAKVME----FTN----VYIKNFGEDMDDKRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + TGRSRGFGFV + E+ Q A+ MNG
Sbjct: 210 IFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 42/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + R GF F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGM 161
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 217 (81.4 bits), Expect = 7.5e-17, P = 7.5e-17
Identities = 58/171 (33%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A+
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR V V + + R GE +++ N YQG +Y NL G+
Sbjct: 252 NGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR F + S KV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 307 DDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 179 (68.1 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 52/165 (31%), Positives = 82/165 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E G K+ F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-LEYGAKVME----FTN----VYIKNFGEDMDDKRLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +GRSRGFGFV + E+ Q A+ MNG
Sbjct: 210 IFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNG 253
Score = 139 (54.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 42/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + Y R GF F T E A ++ M
Sbjct: 116 YDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGM 161
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 41/96 (42%), Positives = 63/96 (65%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A++L++G L + T L+E F++ G V A+IV DRV+DRS+GFGFVT S +EA++A+
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92
Query: 172 RLFDGSQIGGRTVKVNFPEVPR-----GGERAAMGP 202
F+G Q+ GRT+ V++ + + GG A GP
Sbjct: 93 MEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGP 128
Score = 135 (52.6 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T QGL +AF ++ A+++ +R + RS+GFGFVTF +A++ Q AL
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 277 MNG 279
NG
Sbjct: 95 FNG 97
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 51/148 (34%), Positives = 75/148 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L Y T SL E F++ GT+A +++ DR TDRSRGFGFVT + E+AK+A+
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 174 FDGSQIGGRTVKVNFPEVPR-GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G Q+ GR ++V+ E + GG + +GF G G G S G
Sbjct: 84 MNGKQVDGRMIRVD--EAGKSGGRSGGFRGGSRGGGRGFFRGSRGRGGGGYG-GDRSYGS 140
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFG 260
+F G + Y G RG+G
Sbjct: 141 DRSFGGDRSYGGDR----SYGGGDRGYG 164
Score = 146 (56.5 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 32/75 (42%), Positives = 42/75 (56%)
Query: 205 QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
+NS + K++ G L + T Q L +AF + VI +R T RSRGFGFVTF
Sbjct: 12 RNSEVIIMSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTF 71
Query: 265 ETAEDLQSALDAMNG 279
E ED + A+ AMNG
Sbjct: 72 ENPEDAKDAMAAMNG 86
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 209 (78.6 bits), Expect = 2.7e-16, P = 2.7e-16
Identities = 52/165 (31%), Positives = 87/165 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL ++T L + F G +A+ +I+ D+ +++ + FV +A A++
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTL 135
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G QI VK+N+ Q S Q D ++ G+L + + LR+
Sbjct: 136 NGKQIENNIVKINWA--------------FQ-SQQSSSDDTFNLFVGDLNVNVDDETLRN 180
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF+ P LS V+++ TG SRG+GFV+F + +D Q+A+D+M G
Sbjct: 181 AFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 225
Score = 118 (46.6 bits), Expect = 0.00013, P = 0.00013
Identities = 22/74 (29%), Positives = 43/74 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++A+ A+
Sbjct: 164 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 223
Query: 175 DGSQIGGRTVKVNF 188
G + GR +++N+
Sbjct: 224 QGQDLNGRPLRINW 237
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 210 (79.0 bits), Expect = 4.2e-16, P = 4.2e-16
Identities = 57/171 (33%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A+
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + + R E +++ N YQG +Y NL G+
Sbjct: 252 NGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 307 DDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 182 (69.1 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 53/165 (32%), Positives = 82/165 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E G K+ F + +Y N G + + LR+
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-LEYGAKVME----FTN----VYIKNFGEDMDDKRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +GRSRGFGFV + E+ Q A+ MNG
Sbjct: 210 IFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 132 (51.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 40/166 (24%), Positives = 73/166 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS + ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + R GF F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGM 161
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 54/152 (35%), Positives = 75/152 (49%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++++VG + YS L E F++ G V A+I+ DR T RSRGF FVT S EEA A+
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 172 RLFDGSQIGGRTVKVNFPEVPRG---GERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+L DG + GR ++VN+ RG G R GP Y G D + AG G G
Sbjct: 93 QL-DGQDLHGRRIRVNYA-TERGSGFGGRGFGGPG--GGY-GASDGGYGAPAGGYGGGAG 147
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260
G ++ G G Y G + G+G
Sbjct: 148 GYGGNSSYSGNAGGGGGYGGNSSYGGNAGGYG 179
Score = 132 (51.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 26/61 (42%), Positives = 38/61 (62%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
S KI+ G + + GLR+AF ++ AK+I +R TGRSRGF FVTF + E+ +A
Sbjct: 32 SSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA 91
Query: 274 L 274
+
Sbjct: 92 M 92
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 57/167 (34%), Positives = 91/167 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ + +L + + G + S +V D + S+G+GFV + E A+ AI+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + GR V V F R A +G + + + P+ +Y N G + + L+
Sbjct: 159 NGMLLNGRKVFVGQFKS--RKEREAELGARAK-------EFPN-VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 127 (49.8 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 45/170 (26%), Positives = 74/170 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S I D +T S + +V ++A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDKSINNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM--NG 279
D +LS V+ + + GF F T E AE ++ M NG
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNG 165
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 207 (77.9 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 56/167 (33%), Positives = 84/167 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M + L E+F+ G S +++ D T RS+GFGFV EEA++A+
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G +I GR V V + R ++ + K + Q V +Y NL G+ + L
Sbjct: 252 NGKEINGRMVYVGRAQ-KRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 311 RKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 183 (69.5 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 54/165 (32%), Positives = 82/165 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + SRG GFV + E A AI+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A G + F + +Y N G + LR+
Sbjct: 159 NGMLLNDRKVFVGHFK-SRKEREAEFGARAME----FTN----VYIKNFGDDMDDNRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +TGRS+GFGFV FE E+ Q A+ MNG
Sbjct: 210 IFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNG 253
Score = 130 (50.8 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 42/166 (25%), Positives = 73/166 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D + RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR V++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVG---------------NVFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + R GF F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNGM 161
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 207 (77.9 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 56/165 (33%), Positives = 87/165 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NL S+ + +L E F+ GT+ S ++ D + +SRG+GFV + + AK AI
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + + V P + R ER + K++ F + +Y NL T L+
Sbjct: 195 NGKVLNDKQIFVG-PFL-RKEERESAADKMK-----FTN----VYVKNLSEATTDDELKT 243
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F GQ G +S+ V+ G+SR FGFV FE ED A++A+NG
Sbjct: 244 TF-GQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNG 287
Score = 203 (76.5 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 45/165 (27%), Positives = 89/165 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L + F E V S + D T+ S G+G+V + ++A++A++
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S + G+ +++ + R+ +G ++ NL + ++ L +
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVG---------------NLFVKNLDKSVDNKTLHE 152
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF G ++S KV + + G+SRG+GFV F+T + ++A++ +NG
Sbjct: 153 AFSGCGTIVSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNG 196
Score = 165 (63.1 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 52/171 (30%), Positives = 82/171 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + T L F + G+++SA ++ D +SR FGFV + E+A A+
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEAL 285
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPHK-----IYAGNLGWGLT 228
+G + + V + + ER +L Y QG D +K +Y NL +T
Sbjct: 286 NGKKFDDKEWYVG--KAQKKSEREL---ELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVT 340
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR+ F + S KV+ + +G S+G GFV F A + L+ MNG
Sbjct: 341 DEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNG 390
Score = 128 (50.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL ++T L E+FAE GT+ S +++ D + S+G GFV + EA +
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEM 388
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +GG+ + V + R ER A KLQ +
Sbjct: 389 NGKMVGGKPLYVALAQ--RKEERRA---KLQAQF 417
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 43/85 (50%), Positives = 55/85 (64%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
++LYVGNL Y + + L FA GTV SA++V DR T RSRGFGFV MGS +EA+ AI
Sbjct: 3 SKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIA 62
Query: 173 LFDGSQIGGRTVKVNFPEVP--RGG 195
+G ++ GR + VN P RGG
Sbjct: 63 GLNGKEMDGRNLMVNEARPPERRGG 87
Score = 125 (49.1 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 25/63 (39%), Positives = 38/63 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+Y GNL + + L F + SA+V+ +R TGRSRGFGFV + ++ Q+A+
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 277 MNG 279
+NG
Sbjct: 64 LNG 66
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 202 (76.2 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 50/169 (29%), Positives = 92/169 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G+L M + + VFA++G SA+++ +++T +S G+GF+ S A+ ++ +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQTY 121
Query: 175 DGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGWGLTSQG 231
+G+ + +T ++N+ + G +R +Q + P H I+ G+L +T
Sbjct: 122 NGAPMPSTEQTFRLNWAQAGAGEKR----------FQ--TEGPDHTIFVGDLAPEVTDYM 169
Query: 232 LRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L D F+ G + AKV+ +R TGRS+G+GFV F + A+ MNG
Sbjct: 170 LSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
Score = 144 (55.7 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 50/173 (28%), Positives = 79/173 (45%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L++ F G+V A++V DR T RS+G+GFV E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFV---DSPHK--IYAGNLGWGL 227
+G R +++ P + A M P + + QG + P+ I+ G L +
Sbjct: 216 MNGQYCSTRPMRIG----PAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 228 TSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
T L+ F GQ G LL K+ G+ GFV + + AL +NG
Sbjct: 272 TDDELKSIF-GQFGELLHVKIP----PGKR--CGFVQYANKASAEHALSVLNG 317
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 205 (77.2 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 48/173 (27%), Positives = 90/173 (52%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A L+VGNL +++T L + F + G + SA I+ +R T RSRGFG+V + +A +A
Sbjct: 276 SANLFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKAY 334
Query: 172 RLFDGSQIGGRTVKVNFPEV-PRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
+I GR + +++ P ++ + QN + F D SP ++ GNL +
Sbjct: 335 EAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGDQTSPESDTLFVGNLPFS 394
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + F Q +L ++ + +GR +GFG+V + + ++ + A + + G
Sbjct: 395 ANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQG 447
Score = 158 (60.7 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 33/89 (37%), Positives = 49/89 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VGNLP+S S+ EVF G V + D + R +GFG+V SV+EA++A
Sbjct: 386 LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNEL 445
Query: 175 DGSQIGGRTVKVNF--PEVPRGGERAAMG 201
G++I GR ++++F P GG G
Sbjct: 446 QGAEIDGRPIRLDFSTPRANNGGGGGGRG 474
Score = 143 (55.4 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 33/82 (40%), Positives = 46/82 (56%)
Query: 196 ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255
E A K + +G + ++ GNL W +T + L F+ Q G LSA+++ ER TGR
Sbjct: 260 EEPAAASKKSKTEEG---ASANLFVGNLSWNVTEEWLHQEFE-QFGELSARIMTERDTGR 315
Query: 256 SRGFGFVTFETAEDLQSALDAM 277
SRGFG+V F A D A +AM
Sbjct: 316 SRGFGYVEFTNAADAAKAYEAM 337
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 202 (76.2 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/168 (29%), Positives = 84/168 (50%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V + A++AI+
Sbjct: 168 ATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQ 227
Query: 173 LFDGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
G +I GR + + P G A K ++ D+ ++ GNL +
Sbjct: 228 EMQGKEIDGRPINCDMSTSKPAGNNDRAK--KFGDTPSEPSDT---LFLGNLSFNADRDA 282
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + F ++S ++ T + +GFG+V F ED + ALDA+ G
Sbjct: 283 IFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 330
Score = 136 (52.9 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+ P I+ G L W + + L+ F+ G++ A+VI+ER T RSRG+G+V FE +
Sbjct: 165 EEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEK 224
Query: 273 ALDAMNG 279
A+ M G
Sbjct: 225 AIQEMQG 231
Score = 132 (51.5 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+FA+ G V S I T++ +GFG+V ++E+AK+A+
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMG 201
G I R V+++F PR G
Sbjct: 329 QGEYIDNRPVRLDFSS-PRPNNDGGRG 354
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 206 (77.6 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 52/166 (31%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L ++T S L E F +AG V S + D T RS G+G+V + ++A A+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + GR ++V + + P L+ S G I+ NL + + L +
Sbjct: 107 NFMALNGRAIRVMY---------SVRDPSLRKSGVG------NIFIKNLDKSIDHKALHE 151
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F +LS KV + +G+S+G+GFV ++T E Q A+D +NG+
Sbjct: 152 TFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGM 196
Score = 182 (69.1 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 52/165 (31%), Positives = 88/165 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ +L E F+ G + S ++ D + +S+G+GFV + E A+ AI
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V P V + +R G K++ F + +Y NL L+ + L
Sbjct: 194 NGMLLNDKQVYVG-PFVHKL-QRDPSGEKVK-----FTN----VYVKNLSESLSDEELNK 242
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G+ G+ ++ VI G+S+GFGFV FE ++D A+DA+NG
Sbjct: 243 VF-GEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNG 286
Score = 173 (66.0 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 52/168 (30%), Positives = 79/168 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S++ L +VF E G S I+ D +S+GFGFV + ++A A+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDAL 284
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAA-MGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQG 231
+G + V + + ER + K + S + D +Y NL +T
Sbjct: 285 NGKTFDDKEWFVG--KAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR+ F + S KV+ + +G SRG GFV F T E+ A+ MNG
Sbjct: 343 LREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNG 389
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 201 (75.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 48/169 (28%), Positives = 85/169 (50%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A L+VG L +++ + L F G V A ++ +R T +SRG+G+V S A++A+
Sbjct: 168 ATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWGLTSQ 230
G +I GR + + ++ G A+ + G SP ++ GNL +
Sbjct: 228 EMQGKEIDGRPINL---DMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRD 284
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F ++S +V T + +GFG+V F + ++ ++AL+AMNG
Sbjct: 285 NLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNG 333
Score = 138 (53.6 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+ P ++ G L W + L+ F+ G++ A+VI ER TG+SRG+G+V FE+ +
Sbjct: 165 EEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEK 224
Query: 273 ALDAMNG 279
AL+ M G
Sbjct: 225 ALEEMQG 231
Score = 138 (53.6 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ +L VF E G V S + T + +GFG+V SV+EAK A+
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G I GR +++F PR
Sbjct: 332 NGEYIEGRPCRLDF-STPR 349
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 201 (75.8 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 48/169 (28%), Positives = 85/169 (50%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A L+VG L +++ + L F G V A ++ +R T +SRG+G+V S A++A+
Sbjct: 168 ATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKALE 227
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK--IYAGNLGWGLTSQ 230
G +I GR + + ++ G A+ + G SP ++ GNL +
Sbjct: 228 EMQGKEIDGRPINL---DMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRD 284
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F ++S +V T + +GFG+V F + ++ ++AL+AMNG
Sbjct: 285 NLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNG 333
Score = 138 (53.6 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
+ P ++ G L W + L+ F+ G++ A+VI ER TG+SRG+G+V FE+ +
Sbjct: 165 EEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEK 224
Query: 273 ALDAMNG 279
AL+ M G
Sbjct: 225 ALEEMQG 231
Score = 138 (53.6 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ +L VF E G V S + T + +GFG+V SV+EAK A+
Sbjct: 272 LFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAM 331
Query: 175 DGSQIGGRTVKVNFPEVPR 193
+G I GR +++F PR
Sbjct: 332 NGEYIEGRPCRLDF-STPR 349
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 205 (77.2 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 57/166 (34%), Positives = 90/166 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ S +L + F+ G + S ++V D + S+G+GFV + EEA+ AI
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R +A +G + + F + +Y NLG + + L+
Sbjct: 159 NGMFLNDRKVFVGRFKS--RRDRQAELGARAKE----FTN----VYIKNLGEDMDDERLQ 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F LS KV+ + +G+S+GFGFV+FE ED + A+D MNG
Sbjct: 209 DLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEMNG 253
Score = 178 (67.7 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 55/176 (31%), Positives = 87/176 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL M L ++F+ G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHEDARKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGE-RAAMG------PKLQNSYQG-FVDSPH-KIYAGNL 223
+G + G+ + V + V R E + G PK++ Q V +Y NL
Sbjct: 252 NGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNL 311
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+ + LR F + SAKV E GRS+GFGFV F + E+ A+ MNG
Sbjct: 312 DDGIDDERLRKEFSPFGTITSAKVTMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 365
Score = 149 (57.5 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 49/166 (29%), Positives = 76/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + DR T RS G+ V +E+A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + S+ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDRSIDSKTL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNGM 161
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 205 (77.2 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 53/167 (31%), Positives = 85/167 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N +L ++FA+ G + S E++ V +S+GFGFV + EEA+ A++
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQAL 272
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK---IYAGNLGWGLTSQG 231
S I G +K++ + ER A K ++ ++ +Y NL + G
Sbjct: 273 HDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDDDG 332
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L+ F+ + SAKV+ + GRS+GFGFV FE E+ SA+ MN
Sbjct: 333 LKKQFESYGNITSAKVMTDE-NGRSKGFGFVCFEKPEEATSAVTEMN 378
Score = 158 (60.7 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 48/168 (28%), Positives = 80/168 (47%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L + S L E F+ AG V S + D T S G+ +V +A+ A+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + P ++ S G I+ NL + ++ +
Sbjct: 92 TMNFEALHGKPMRIMWSQ---------RDPAMRRSGAG------NIFIKNLDKVIDNKSI 136
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV + G S+G+GFV FET E Q+A+ +NG+
Sbjct: 137 YDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAIQKVNGM 183
Score = 145 (56.1 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 44/167 (26%), Positives = 81/167 (48%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL + + S+ + F+ G + S ++ D S+G+GFV + E A+ AI
Sbjct: 119 AGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQNAI 177
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +G + G+ V V + PR +G + + Q F + +Y N G +
Sbjct: 178 QKVNGMLLAGKKVFVGKFQ-PRAQRNRELG---ETAKQ-FTN----VYVKNFGDHYNKET 228
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L F + S +V+ G+S+GFGFV F E+ ++A+ A++
Sbjct: 229 LEKLFAKFGNITSCEVM--TVEGKSKGFGFVAFANPEEAETAVQALH 273
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 204 (76.9 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 57/165 (34%), Positives = 88/165 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G++ S+++VY+ SRGFGFV + E A++AI
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A +G + GF + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFK-SRQKREAELGARAL----GFTN----IYVKNLRVDMDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F S KV+ + G+SRGFGF+ FE E+ Q A+D MNG
Sbjct: 210 LFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHMNG 253
Score = 192 (72.6 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 53/171 (30%), Positives = 84/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL M L ++F++ G S +++ D +SRGFGF+ EEA++A+
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAA----MGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + R E M + QN YQG +Y NL +
Sbjct: 252 NGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGV-----NLYVKNLDDSIN 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F + SAKV+ E + S+GFGFV F + E+ A+ MNG
Sbjct: 307 DDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 147 (56.8 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 43/164 (26%), Positives = 76/164 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T + L E+F+ GT+ S + D T RS G+ ++ +A+ A+
Sbjct: 13 LYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ +++ + G R+ MG I+ NL + ++ L D
Sbjct: 73 NFEMIKGQPIRIMWSHRDPGLRRSGMG---------------NIFIKNLENSIDNKALYD 117
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
F +LS+KV++ + R GF F T E A+ + ++ M
Sbjct: 118 TFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNGM 161
Score = 124 (48.7 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 34/95 (35%), Positives = 52/95 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL S+ L EVF+ G + SA+++ + + S+GFGFV S EEA +A+
Sbjct: 296 LYVKNLDDSINDDRLKEVFSTYGVITSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEM 353
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ 209
+G +G + + V + R ER A+ L N Y+
Sbjct: 354 NGRIVGTKPLYVALAQ--RKEERKAI---LTNQYR 383
Score = 115 (45.5 bits), Expect = 0.00043, P = 0.00043
Identities = 27/63 (42%), Positives = 39/63 (61%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ NL + ++ L D F +LS+KV++ + G SRGFGFV FET E Q A++ M
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEH-G-SRGFGFVHFETHEAAQKAINTM 158
Query: 278 NGV 280
NG+
Sbjct: 159 NGM 161
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 198 (74.8 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 57/167 (34%), Positives = 91/167 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ + +L + + G + S +V D + S+G+GFV + E A+ AI+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + GR V V F R A +G + + + P+ +Y N G + + L+
Sbjct: 159 NGMLLNGRKVFVGQFKS--RKEREAELGARAK-------EFPN-VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 168 (64.2 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 47/158 (29%), Positives = 80/158 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGE-RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G ++ G+ + V + V R E + Q+ + +Y NL G+ +
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRY--QVVNLYVKNLDDGIDDER 309
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
LR AF + SAKV+ E GRS+GFGFV F + E+
Sbjct: 310 LRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEE 345
Score = 127 (49.8 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 45/170 (26%), Positives = 74/170 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S I D +T S + +V ++A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDKSINNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM--NG 279
D +LS V+ + + GF F T E AE ++ M NG
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNG 165
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 201 (75.8 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 57/173 (32%), Positives = 90/173 (52%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +YV NL ++T L +F++ GTV+S ++ D + RSRGFGFV + E AK+A+
Sbjct: 201 STNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAKKAM 259
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ-GFVDSPH----KIYAGNLGWG 226
G Q+G + + V + + ER M L+ + F+ P+ +Y NL
Sbjct: 260 ESLCGLQLGSKKLFVG--KALKKDERREM---LKQKFSDNFIAKPNMRWSNLYVKNLSES 314
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR+ F ++SAKV+ GRS+GFGFV F E+ + A +NG
Sbjct: 315 MNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKRYLNG 366
Score = 188 (71.2 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 58/168 (34%), Positives = 86/168 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV NL S+TSS L +F G++ S ++V + +S+GFGFV + + A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARS 169
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
GS + G+ K+ + ERAAM G DS + +Y NL +T L
Sbjct: 170 ALHGSMVYGK--KLFVAKFINKDERAAMA--------GNQDSTN-VYVKNLIETVTDDCL 218
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F Q G +S+ V+ GRSRGFGFV F E+ + A++++ G+
Sbjct: 219 HTLFS-QYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGL 265
Score = 146 (56.5 bits), Expect = 6.1e-08, P = 6.1e-08
Identities = 46/165 (27%), Positives = 77/165 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +T L + F+ V S + + VT +S + ++ S A A+
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ S + G+ +++ + + R + GF + +Y NL +TS L
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRR--------RTRTGFAN----LYVKNLDSSITSSCLER 130
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ E G+S+GFGFV F+T + SA A++G
Sbjct: 131 MFCPFGSILSCKVVEEN--GQSKGFGFVQFDTEQSAVSARSALHG 173
Score = 130 (50.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 29/78 (37%), Positives = 44/78 (56%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+ LYV NL SM + L E+F G + SA+++ RS+GFGFV + EE+K+A R
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKR 362
Query: 173 LFDGSQIGGRTVKVNFPE 190
+G + G+ + V E
Sbjct: 363 YLNGFLVDGKPIVVRVAE 380
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 194 (73.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 112 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 171
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 172 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 225
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 226 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 270
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 194 (73.4 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 128 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 187
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 188 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 241
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 242 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 286
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 194 (73.4 bits), Expect = 6.3e-15, P = 6.3e-15
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 147 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 200
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 201 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 245
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 197 (74.4 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 46/166 (27%), Positives = 82/166 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L +++ L + F E GT+ A ++ D + RS+G+G+V + E AK A+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK-IYAGNLGWGLTSQGLR 233
+I GR V ++ PR + ++ + P ++ GNL + T L
Sbjct: 325 GTKEIDGRMVNLDLSN-PRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLS 383
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF G + S ++ + +GR +GFG+VTF + + ++ MNG
Sbjct: 384 TAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNG 428
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 199 (75.1 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 50/163 (30%), Positives = 88/163 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NL Y+ + +L E+F +A ++ + R +G+ FV + E+AKEA+
Sbjct: 461 LIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSC 516
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ ++I GR +++ F P ++ M N+ GF ++ L T + LR+
Sbjct: 517 NNTEIEGRAIRLEFSS-P-SWQKGNM-----NARGGFNQQSKTLFVRGLSEDTTEETLRE 569
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 570 SFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 609
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 32/80 (40%), Positives = 44/80 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ SA IV DR T S+GFGFV S E+AK A
Sbjct: 553 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 609
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 610 EDGEIDGNKVTLDFAK-PKG 628
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 199 (75.1 bits), Expect = 7.6e-15, P = 7.6e-15
Identities = 50/163 (30%), Positives = 88/163 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NL Y+ + +L E+F +A ++ + R +G+ FV + E+AKEA+
Sbjct: 463 LIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSC 518
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ ++I GR +++ F P ++ M N+ GF ++ L T + LR+
Sbjct: 519 NNTEIEGRAIRLEFSS-P-SWQKGNM-----NARGGFNQQSKTLFVRGLSEDTTEETLRE 571
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 572 SFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 32/80 (40%), Positives = 44/80 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ SA IV DR T S+GFGFV S E+AK A
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 612 EDGEIDGNKVTLDFAK-PKG 630
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 199 (75.1 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 50/163 (30%), Positives = 88/163 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V NL Y+ + +L E+F +A ++ + R +G+ FV + E+AKEA+
Sbjct: 463 LIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFVEFPTAEDAKEALNSC 518
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ ++I GR +++ F P ++ M N+ GF ++ L T + LR+
Sbjct: 519 NNTEIEGRAIRLEFSS-P-SWQKGNM-----NARGGFNQQSKTLFVRGLSEDTTEETLRE 571
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 572 SFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 32/80 (40%), Positives = 44/80 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ SA IV DR T S+GFGFV S E+AK A
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 612 EDGEIDGNKVTLDFAK-PKG 630
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 195 (73.7 bits), Expect = 8.2e-15, P = 8.2e-15
Identities = 52/169 (30%), Positives = 88/169 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VG+L + M + L F+ G V+S +++ +++T +S G+GFV S A+E ++ +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 175 DGSQI--GGRTVKVNFPEVPRGGERAAM-GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
GS + + ++N+ G +RA GP L ++ G+L +T
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLS------------VFVGDLSPDVTDVL 217
Query: 232 LRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F + P + SAKV+ + TGRS+G+GFV F + AL MNG
Sbjct: 218 LHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNG 266
Score = 130 (50.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 49/181 (27%), Positives = 86/181 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F++ +V SA++V D T RS+G+GFV G E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG-L 232
+G+ R ++V R A+ + Q+S Q + + G++G+G S G
Sbjct: 264 MNGAYCSNRQMRVGIATPKR-----AIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGES 318
Query: 233 RDA--FQG--QPGLLSAKVI--FERYTGR--------SRGFGFVTFETAEDLQSALDAMN 278
+A F G P ++ + F ++ G +G GFV F + + A++++N
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQF-GEVVSVKIPVGKGCGFVQFADRKSAEDAIESLN 377
Query: 279 G 279
G
Sbjct: 378 G 378
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 198 (74.8 bits), Expect = 8.3e-15, P = 8.3e-15
Identities = 51/168 (30%), Positives = 91/168 (54%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL S+ +L + F+ G + S ++ D + +S+G+GFV + E A++AI
Sbjct: 123 AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAI 181
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V V P + R ER + K + F + +Y NL T
Sbjct: 182 EKLNGMLLNDKQVYVG-PFLRRQ-ERDSTANKTK-----FTN----VYVKNLAESTTDDD 230
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++AF G+ G +++ V+ + G+S+GFGFV FE A+D A++++NG
Sbjct: 231 LKNAF-GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Score = 193 (73.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 48/166 (28%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L + F + GTV + + D VT RS G+G+V + ++A AI+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + G+ ++V + P ++ S G I+ NL + + L D
Sbjct: 98 NYIPLYGKPIRVMYSH---------RDPSVRRSGAG------NIFIKNLDESIDHKALHD 142
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F ++S KV + +G+S+G+GFV + E Q A++ +NG+
Sbjct: 143 TFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGM 187
Score = 160 (61.4 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 47/168 (27%), Positives = 78/168 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL S T L F E G + SA ++ D +S+GFGFV + ++A A+
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADDAARAVESL 275
Query: 175 DGSQIGGRTVKVNFPEVPRGGE---RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + + V + E R L+ + F S +Y NL ++ +
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSS--NLYVKNLDPSISDEK 333
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L++ F + S+KV+ + G S+G GFV F T E+ A+ ++G
Sbjct: 334 LKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAMSQLSG 380
Score = 115 (45.5 bits), Expect = 0.00045, P = 0.00045
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
++ LYV NL S++ L E+F+ GTV S++++ D S+G GFV + EEA EA+
Sbjct: 317 SSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEATEAM 375
Query: 172 RLFDGSQIGGRTVKV 186
G I + + V
Sbjct: 376 SQLSGKMIESKPLYV 390
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 198 (74.8 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 57/167 (34%), Positives = 91/167 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S+ + +L + + G + S +V D + S+G+GFV + E A+ AI+
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + GR V V F R A +G + + + P+ +Y N G + + L+
Sbjct: 159 NGMLLNGRKVFVGQFKS--RKEREAELGARAK-------EFPN-VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 186 (70.5 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 51/168 (30%), Positives = 85/168 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGE-RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G ++ G+ + V + V R E + Q+ + +Y NL G+ +
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRY--QVVNLYVKNLDDGIDDER 309
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR AF + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 310 LRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 127 (49.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 45/170 (26%), Positives = 74/170 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S I D +T S + +V ++A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFVKNLDKSINNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM--NG 279
D +LS V+ + + GF F T E AE ++ M NG
Sbjct: 116 YDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNG 165
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 194 (73.4 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 22 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 81
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 82 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 135
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 136 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 180
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 197 (74.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 53/167 (31%), Positives = 85/167 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D T +SRGFGFV+ E+A +A+
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G+++ G+TV V + + +A + K + Q + +Y NL + + L
Sbjct: 253 NGTELNGKTVFVGRAQ-KKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 311
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 312 RKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNG 356
Score = 182 (69.1 bits), Expect = 4.5e-13, P = 4.5e-13
Identities = 53/166 (31%), Positives = 84/166 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 159
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A MG K + F + +Y N G + Q L+
Sbjct: 160 NGMLLNDRKVFVGRFKS--RKEREAEMGAKAKE----FTN----VYIKNFGDDMDDQRLK 209
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + TG+SRGFGFV++E ED A++ MNG
Sbjct: 210 ELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNG 254
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 41/166 (24%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 72 TMNFDVVKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 116
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T + A+ ++ M
Sbjct: 117 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGM 162
Score = 114 (45.2 bits), Expect = 0.00059, P = 0.00059
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEM 354
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 355 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 383
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 85 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 139
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 140 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 188
Score = 107 (42.7 bits), Expect = 0.00086, P = 0.00086
Identities = 32/94 (34%), Positives = 48/94 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 129 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 186
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G + + + V + R ER A L N Y
Sbjct: 187 NGRIVATKPLYVALAQ--RKEERQA---HLTNQY 215
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 197 (74.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 57/177 (32%), Positives = 90/177 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++ +LP S T+ SLAE F+++ + A +V D T +S+G+GFVT VE+AK A+
Sbjct: 39 LFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEEL 98
Query: 175 DGSQIGGRTVKVNFPEVPRG-------GERA----AMGPKLQNSYQGFVDSPHKIYAGNL 223
+GS G+ +KV + + PR G+ A+ K Q Q P K+ NL
Sbjct: 99 NGSTFEGKKIKVEYAQ-PRHRVVDETVGKSVPSAEALERKKQREQQKADTQPPKLIVRNL 157
Query: 224 GWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
W + T + L F+ G + V + + GFGFV ++ + AL+A+NG
Sbjct: 158 PWSIKTPEDLAAHFRSF-GKVKY-VTLPKKGSQLAGFGFVVLRGKKNAEKALEAVNG 212
Score = 100 (40.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A+ +++ NLP++ SL + F + G + A IV D T+R RG GFV E A+ +
Sbjct: 308 ASTIFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCFWKPEHAQACV 367
Query: 172 R 172
+
Sbjct: 368 Q 368
Score = 95 (38.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 114 RLYVGNLPYSM-TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
+L V NLP+S+ T LA F G V + + + GFGFV + + A++A+
Sbjct: 151 KLIVRNLPWSIKTPEDLAAHFRSFGKVKY--VTLPKKGSQLAGFGFVVLRGKKNAEKALE 208
Query: 173 LFDGSQIGGRTVKVNF 188
+G ++ GRT+ V++
Sbjct: 209 AVNGKEVDGRTLAVDW 224
Score = 69 (29.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G G+ Q + F+G+ G +KV + GRSRG+GF+ + T L +NG
Sbjct: 555 GVGVVRQA-KIVFEGRDG---SKVSEDSGAGRSRGYGFIEYYTHRHALMGLRWLNG 606
Score = 64 (27.6 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
I+ NL + + L D F L A+++ + T R RG GFV F E Q+ +
Sbjct: 311 IFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCFWKPEHAQACV 367
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 196 (74.1 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 52/167 (31%), Positives = 83/167 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S ++ D + +S+GFGFV+ E+A+ A+
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G ++ G+ V V + +G + + K + Q + +Y NL GL + L
Sbjct: 252 NGKEMNGKQVYVGRAQ-KKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERL 310
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 311 RKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 185 (70.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 53/166 (31%), Positives = 87/166 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A MG + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAEMGARAKE----FTN----VYIKNFGEDMDDEKLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS +V+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 EIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHEDAQRAVDEMNG 253
Score = 144 (55.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 47/166 (28%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGRPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGM 161
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 195 (73.7 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 56/167 (33%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 113
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 114 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 163
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 164 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 208
Score = 187 (70.9 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 207 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 261
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 262 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 310
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 93 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 152
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 153 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 206
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 207 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 251
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 195 (73.7 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 56/167 (33%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 166 (63.5 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 50/172 (29%), Positives = 83/172 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ LR F + SAKV+ E GRS+GFGFV F + + S N V
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSYMQRMASVRAVPNPV 356
Score = 141 (54.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 161 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 214
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 215 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 259
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 194 (73.4 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 101 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 160
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 161 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 214
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 215 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 259
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 194 (73.4 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 114 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 174 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 227
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 228 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 272
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 56/167 (33%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 56/167 (33%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 56/167 (33%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 56/167 (33%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 56/167 (33%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 139 (54.0 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 46/166 (27%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 194 (73.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 130 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 189
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 190 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 243
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 244 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 288
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 194 (73.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 131 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 190
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 191 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 244
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 245 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 289
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 195 (73.7 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 56/167 (33%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 DLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 141 (54.7 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 194 (73.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 195 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 248
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 249 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 293
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 194 (73.4 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 44/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 135 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 194
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 195 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHQDLSDDDIK 248
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ +E A+ Q A+ +MN
Sbjct: 249 SVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 293
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 187 (70.9 bits), Expect = 1.9e-14, P = 1.9e-14
Identities = 36/77 (46%), Positives = 48/77 (62%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L++G + YSM SL E F + G V ++ DR T RSRGFGFVT S E A AI
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAI 98
Query: 172 RLFDGSQIGGRTVKVNF 188
+ DG + GR VKVN+
Sbjct: 99 QALDGRDLHGRVVKVNY 115
Score = 142 (55.0 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
S K++ G + + + LR+AF ++ +VI +R TGRSRGFGFVTF ++E SA
Sbjct: 38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA 97
Query: 274 LDAMNG 279
+ A++G
Sbjct: 98 IQALDG 103
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 193 (73.0 bits), Expect = 2.9e-14, P = 2.9e-14
Identities = 57/167 (34%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPGL-LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F GQ G LS KV+ + + G+SRGFGFV+FE ED Q A+D MNG
Sbjct: 209 EWF-GQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNG 253
Score = 184 (69.8 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 54/171 (31%), Positives = 83/171 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E F + G S +++ D +SRGFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G + G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 141 (54.7 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGM 161
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 130 (50.8 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 126 (49.4 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDG 176
+G
Sbjct: 185 GLNG 188
Score = 89 (36.4 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NG 279
NG
Sbjct: 187 NG 188
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 190 (71.9 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 53/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 25 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 83
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 84 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 138
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 139 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 187
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 189 (71.6 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 50/169 (29%), Positives = 86/169 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++G+L M S L F++AG V S +I+ ++ T +S +GFV + A++ ++ +
Sbjct: 86 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145
Query: 175 DGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G+ + + ++N+ G +RA G S I+ G+L +T L
Sbjct: 146 NGTMMPNTEQPFRLNWAGFSTGEKRAETG------------SDFSIFVGDLASDVTDTML 193
Query: 233 RDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
RD F + P L AKV+ + TG S+G+GFV F + A+ MNGV
Sbjct: 194 RDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGV 242
Score = 131 (51.2 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 46/180 (25%), Positives = 79/180 (43%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T + L + FA ++ A++V D T S+G+GFV G E A+
Sbjct: 179 IFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTE 238
Query: 174 FDGSQIGGRTVKVNF--PEVPRGGER-AAMGPKLQNSY----------QGFVDSPHK-IY 219
+G R +++ P+ P E+ ++ L Y Q DS + I+
Sbjct: 239 MNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIF 298
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G L +T + LR +F ++S K+ +G GFV F Q A+ ++G
Sbjct: 299 VGGLDSEVTDEELRQSFNQFGEVVSVKI------PAGKGCGFVQFSDRSSAQEAIQKLSG 352
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 192 (72.6 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 56/171 (32%), Positives = 84/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F++ G S +++ D T +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G I G+ V V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/166 (30%), Positives = 84/166 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + + A AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQDAADRAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGDDMDDERLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + TG+S+GFGFV+FE ED A++ MNG
Sbjct: 209 ELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNG 253
Score = 128 (50.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 42/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T + A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGM 161
Score = 113 (44.8 bits), Expect = 0.00076, P = 0.00076
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 354 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 192 (72.6 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 54/171 (31%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + SL E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 171 (65.3 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 50/166 (30%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDESLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG
Sbjct: 209 ELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 133 (51.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Score = 113 (44.8 bits), Expect = 0.00076, P = 0.00076
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 354 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 192 (72.6 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 53/166 (31%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDDKLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +S +V+ + G+SRGFGFV+FE ED Q A+D MNG
Sbjct: 209 DIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEMNG 253
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 52/171 (30%), Positives = 84/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F++ G S ++ D +SRGFGFV+ E+A+ A+
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ + GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 147 (56.8 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 47/166 (28%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGRPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 186 (70.5 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 47/173 (27%), Positives = 89/173 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +++ + FA G ++ A +V D T +S+G+GF++ + +A+ AI+
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
+G +GGR ++ N+ P P+ A L SY+ ++ SP +Y G + G
Sbjct: 159 NGQWLGGRQIRTNWATRKPSAPKSNNEGASSKHL--SYEEVLNQSSPSNCTVYCGGIASG 216
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+ Q +R F ++ +V E+ G+ FV F++ E A+ ++NG
Sbjct: 217 LSDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFDSHEGAAHAIVSVNG 263
Score = 168 (64.2 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 47/165 (28%), Positives = 83/165 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + +VF++ G S +++ D T + + FV A A+
Sbjct: 11 LYVGNLSRDVTEALILQVFSQIGPCKSCKMILD--TTGNDPYCFVEFYENRHAAAALAAM 68
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ +KVN+ P ++ N + FV G+L +++ +R
Sbjct: 69 NGRKILGKDMKVNWASTPSSQKKDT-----SNHFHVFV--------GDLSPEISTDDVRA 115
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GF++F D +SA+ MNG
Sbjct: 116 AFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNG 160
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 191 (72.3 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 55/167 (32%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 94
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 95 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 144
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 145 ELF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 189
Score = 190 (71.9 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 53/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 188 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 242
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 243 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 291
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 190 (71.9 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 52/166 (31%), Positives = 84/166 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
LYVGNLP S + ++ E+F+ G V + +I+ D+ + F+ + E A A+
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDK-NKAGFNYAFIEYDTNEVADMALNT 139
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + +KVN+ + AA+ N+ + + I+ G+L + +GLR
Sbjct: 140 LNGRLVDDVEIKVNW-----AFQSAAIAGNPNNTEEPLFN----IFVGDLSPEVNDEGLR 190
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+AF L A V+++ T RSRG+GFVTF D + AL MNG
Sbjct: 191 NAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNG 236
Score = 128 (50.1 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 23/74 (31%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L + L F++ ++ A +++D T RSRG+GFVT G+ +A+ A++
Sbjct: 175 IFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTM 234
Query: 175 DGSQIGGRTVKVNF 188
+G + GR ++ N+
Sbjct: 235 NGEWLCGRAIRCNW 248
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 192 (72.6 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 54/171 (31%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + SL E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 291
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 292 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 346
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 347 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 395
Score = 171 (65.3 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 50/166 (30%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 198
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 199 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDESLK 248
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG
Sbjct: 249 ELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNG 293
Score = 113 (44.8 bits), Expect = 0.00087, P = 0.00087
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 393
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 394 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 422
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 190 (71.9 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 43/165 (26%), Positives = 85/165 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 94 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQ 153
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + F ++IY ++ L+ ++
Sbjct: 154 MNSVMLGGRNIKVGRPS--NIGQAQPIIDQLAEEARAF----NRIYVASVHPDLSDDDIK 207
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + + TG+ +G+GF+ ++ A+ Q A+ +MN
Sbjct: 208 SVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMN 252
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 190 (71.9 bits), Expect = 4.7e-14, P = 4.7e-14
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + SL E+F++ G S +++ D +S+GFGFV+ E+A +A+
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 153
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 154 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 208
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 209 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 257
Score = 170 (64.9 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 50/166 (30%), Positives = 84/166 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 60
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 61 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDESLK 110
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + G+S+GFGFV++E ED A++ MNG
Sbjct: 111 ELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNG 155
Score = 113 (44.8 bits), Expect = 0.00063, P = 0.00063
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 255
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 256 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 284
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 55/167 (32%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 ELF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 190 (71.9 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 53/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 191 (72.3 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 55/167 (32%), Positives = 90/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGEDMDDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F G+ G LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 ELF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 190 (71.9 bits), Expect = 6.1e-14, P = 6.1e-14
Identities = 53/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 141 (54.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 46/166 (27%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 161
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 45/165 (27%), Positives = 87/165 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 130 (50.8 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 24/74 (32%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNF 188
G +GGR ++ N+
Sbjct: 168 GGQWLGGRQIRTNW 181
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 192 (72.6 bits), Expect = 5.0e-14, P = 5.0e-14
Identities = 51/169 (30%), Positives = 87/169 (51%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 120 EELNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDVAIDNKA 164
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + G S+G+GFV +ET E A+ +NG+
Sbjct: 165 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGM 212
Score = 167 (63.8 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 44/164 (26%), Positives = 80/164 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHV 209
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K F + IY N+ +T R
Sbjct: 210 NGMLLNEKKVYVGH-HIPKKDRQS----KFDEMKANFTN----IYVKNINPEVTDDEFRT 260
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S+ + ++ TG+SRGFGFV F + ED A+ +N
Sbjct: 261 LFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
Score = 123 (48.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 45/146 (30%), Positives = 67/146 (45%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI--- 171
+YV N+ +T +F + G V S+ + D+ T +SRGFGFV S E+A +A+
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 172 --RLFDGSQIG-GRTVKVNFPEVP-RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
+ F G + GR K + E R AA K + YQG +Y NL +
Sbjct: 304 NEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKA-SKYQGV-----NLYIKNLDDEV 357
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYT 253
+ LR F + SAKV+ + T
Sbjct: 358 DDEKLRQLFSEFGPITSAKVMRDSIT 383
Score = 64 (27.6 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 254 GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F +D A+ MN
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMN 454
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 191 (72.3 bits), Expect = 5.1e-14, P = 5.1e-14
Identities = 56/168 (33%), Positives = 87/168 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L E F+ GT+ S ++ D VT RS+G+GFV E A+ AI
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKL 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH--KIYAGNLGWGLTSQGL 232
+G + + V V R ERA + +N+ +P +Y NL + L
Sbjct: 197 NGMLMNDKQVFVG--HFIRRQERA----RDENT-----PTPRFTNVYVKNLPKEIGEDEL 245
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
R F G+ G++S+ V+ +G SR FGFV FE E SA++ MNG+
Sbjct: 246 RKTF-GKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGI 292
Score = 171 (65.3 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 49/166 (29%), Positives = 74/166 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NLP + L + F + G ++SA ++ D+ + SR FGFV E A A+
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKM 289
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH-KIYAGNLGWGLTSQGLR 233
+G +G + V + E Q F S +Y NL + + L+
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F + S+KV+ G SRGFGFV + E+ AL MNG
Sbjct: 350 EMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNG 394
Score = 116 (45.9 bits), Expect = 0.00036, P = 0.00036
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+ NL S+ L E+F+E G V S++++ + SRGFGFV + EEA A+
Sbjct: 332 ANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALS 390
Query: 173 LFDGSQIGGRTVKV 186
+G IG + + +
Sbjct: 391 EMNGKMIGRKPLYI 404
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 190 (71.9 bits), Expect = 5.8e-14, P = 5.8e-14
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + SL E+F++ G S +++ D +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 170 (64.9 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 50/166 (30%), Positives = 84/166 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDESLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + G+S+GFGFV++E ED A++ MNG
Sbjct: 209 ELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 133 (51.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Score = 113 (44.8 bits), Expect = 0.00074, P = 0.00074
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 354 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 190 (71.9 bits), Expect = 6.3e-14, P = 6.3e-14
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + SL E+F++ G S +++ D +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 170 (64.9 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 50/166 (30%), Positives = 84/166 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDESLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + G+S+GFGFV++E ED A++ MNG
Sbjct: 209 ELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 133 (51.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Score = 113 (44.8 bits), Expect = 0.00078, P = 0.00078
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 354 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 186 (70.5 bits), Expect = 6.6e-14, P = 6.6e-14
Identities = 49/171 (28%), Positives = 87/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G+L Y M + L FA G + SA+++ ++ T + G+GF+ S A+ ++ F
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 175 DGSQIGG---RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGWGLTSQ 230
+ + I + ++N+ + G +R DSP + I+ G+L +T
Sbjct: 124 NNAPIPSFPDQLFRLNWASLSSGDKRD--------------DSPDYTIFVGDLAADVTDY 169
Query: 231 GLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L + F+ P + AKV+ +R TGR++G+GFV F + A+ MNGV
Sbjct: 170 ILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGV 220
Score = 137 (53.3 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 47/173 (27%), Positives = 79/173 (45%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DRVT R++G+GFV E A+
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFV--DSPHK--IYAGNLGWGL 227
+G R +++ P ++ G + Q+S G + P+ ++ G L +
Sbjct: 217 MNGVPCSTRPMRIG----PAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASV 272
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F Q G +++ + R GFV F + AL +NGV
Sbjct: 273 TDDHLKNVFS-QYG----EIVHVKIPAGKR-CGFVQFSEKSCAEEALRMLNGV 319
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 184 (69.8 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 51/167 (30%), Positives = 86/167 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +Y+GNL ++ S + E+ +AG + + + DRVT +G+GFV S E+A+ A R
Sbjct: 13 ATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDAEYASR 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ +G ++ G+ ++VN A K Q S V+ +++ GNL +T Q L
Sbjct: 73 IMNGIRLYGKPIRVN----------KASADK-QKS----VEIGAELFVGNLDPMVTEQVL 117
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F L++ + + S+G+GFV+F E +A+ MNG
Sbjct: 118 YDTFSRFGNLVNLPKVARDDSNLSKGYGFVSFADFESSDAAIANMNG 164
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 189 (71.6 bits), Expect = 7.8e-14, P = 7.8e-14
Identities = 53/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + +L E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 171 (65.3 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 50/166 (30%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDENLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG
Sbjct: 209 ELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 133 (51.9 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Score = 113 (44.8 bits), Expect = 0.00076, P = 0.00076
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 354 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 184 (69.8 bits), Expect = 8.4e-14, P = 8.4e-14
Identities = 52/168 (30%), Positives = 84/168 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L +VF++ G S +++ D + +S+GFGFV+ S E AK+A+
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS-YQGFVDSPHKIYAGNLGWGLTSQG 231
+G I G+ + V + V R E M +L+ +G K+Y NL + +
Sbjct: 251 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGV--KLYIKNLDDTIDDEK 308
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR+ F + KV+ E G+S+GFG + F + ED A+ MNG
Sbjct: 309 LRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNG 354
Score = 161 (61.7 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 49/165 (29%), Positives = 85/165 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L E F+ G + S++++ D S+G+ FV + A AI
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 157
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + G KV F V R R +L++ F + +Y N G + + L+D
Sbjct: 158 NGKLLKG--CKV-F--VGRFKNRKDREAELRSKASEFTN----VYIKNFGGDMDDERLKD 208
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+F++ E + A++ MNG
Sbjct: 209 VFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNG 252
Score = 110 (43.8 bits), Expect = 0.00077, P = 0.00077
Identities = 39/147 (26%), Positives = 70/147 (47%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T L F+ G V S I D+VT RS G+ +V + +A++A+
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG--LTSQ 230
+ I G+++++ + + R+ +G + +D+ +Y +G L+S+
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNK-TLYEHFSAFGKILSSK 128
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSR 257
+ D QG G A V F+ + R
Sbjct: 129 VMSDD-QGSKGY--AFVHFQNQSAADR 152
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 188 (71.2 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + +L E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 180
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+++ V + V R E +L+ YQG +Y NL +
Sbjct: 181 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 235
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 236 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 284
Score = 175 (66.7 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 51/166 (30%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 87
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + LR
Sbjct: 88 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDENLR 137
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG
Sbjct: 138 ELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNG 182
Score = 113 (44.8 bits), Expect = 0.00069, P = 0.00069
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 282
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 283 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 311
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 182 (69.1 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 56/165 (33%), Positives = 84/165 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++ D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E A +G + F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-AELGARALE----FTN----IYVKNLPVDVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SR FGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Score = 132 (51.5 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 41/166 (24%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV + + R GF F T E A+ + ++ M
Sbjct: 116 YDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGM 161
Score = 118 (46.6 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 38/138 (27%), Positives = 63/138 (45%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NLP + L ++F++ G + S +++ D + SR FGFV EEA++A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + + V R E +++ YQG +Y NL +
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAK 246
LR F + SAK
Sbjct: 307 DDKLRKEFSPYGVITSAK 324
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 185 (70.2 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 45/169 (26%), Positives = 88/169 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G+L Y + + L F++ G + S +++ +++T + G+GF+ S A+ ++ +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 175 DGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G+Q+ G T ++N+ G++ GP H I+ G+L +T L
Sbjct: 86 NGTQMPGTELTFRLNWASFG-SGQKVDAGPD------------HSIFVGDLAPDVTDYLL 132
Query: 233 RDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
++ F+ + AKV+ + TGRS+G+GFV F + A+ MNG+
Sbjct: 133 QETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGL 181
Score = 119 (46.9 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 49/183 (26%), Positives = 82/183 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V D T RS+G+GFV E A+
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 174 FDGSQIGGRTVKVNF--PEVPRGGERA----AMGPKLQNS-----YQGFVDSPHK----- 217
+G R ++++ P+ G ++ A+ P S Q +V P
Sbjct: 178 MNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCT 237
Query: 218 -IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
I NL +T + L+ AF Q G +VI+ + ++G+G+V F+T + A+
Sbjct: 238 TISVANLDQNVTEEELKKAFS-QLG----EVIYVKIPA-TKGYGYVQFKTRPSAEEAVQR 291
Query: 277 MNG 279
M G
Sbjct: 292 MQG 294
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 188 (71.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + +L E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+++ V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 175 (66.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 51/166 (30%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + LR
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDENLR 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG
Sbjct: 209 ELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 131 (51.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 43/166 (25%), Positives = 73/166 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGM 161
Score = 113 (44.8 bits), Expect = 0.00076, P = 0.00076
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 354 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 188 (71.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 55/171 (32%), Positives = 84/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + L ++F+ G + S +++ D + SRGFGFV EEA++A+
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 186 (70.5 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 56/165 (33%), Positives = 85/165 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQQAITTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E +G + F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-VELGARAME----FTN----IYVKNLHVDVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SRGFGFV F+ E+ Q A+ MNG
Sbjct: 210 LFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDMNG 253
Score = 134 (52.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 42/166 (25%), Positives = 76/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + R GF F T E A+ + ++ M
Sbjct: 116 YDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMNGM 161
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 188 (71.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 52/171 (30%), Positives = 87/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + +L E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+++ V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 175 (66.7 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 51/166 (30%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAANKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + LR
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDENLR 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG
Sbjct: 209 ELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 131 (51.2 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 43/166 (25%), Positives = 73/166 (43%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGM 161
Score = 113 (44.8 bits), Expect = 0.00081, P = 0.00081
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 354 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 52/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 220 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 274
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 275 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 323
Score = 156 (60.0 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 47/129 (36%), Positives = 69/129 (53%)
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGF 211
S+G+GFV + E A+ AI +G + R V V F R A +G + + F
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS--RKEREAELGARAKE----F 158
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDL 270
+ +Y N G + + L+D F G+ G LS KV+ + +G+S+GFGFV+FE ED
Sbjct: 159 TN----VYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 212
Query: 271 QSALDAMNG 279
Q A+D MNG
Sbjct: 213 QKAVDEMNG 221
Score = 108 (43.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKV 186
+ I G+ V++
Sbjct: 71 TMNFDVIKGKPVRI 84
Score = 78 (32.5 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 237 QGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
Q P L + V+ + G S+G+GFV FET E + A++ MNG+
Sbjct: 88 QRDPSLRKSGVVCDE-NG-SKGYGFVHFETQEAAERAIEKMNGM 129
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 58/165 (35%), Positives = 85/165 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A+ AIR
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQNAIRTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E A +G + F + IY NL + + L+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-AELGARALE----FTN----IYVKNLHVDVDERCLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SRGFGFV FE ED Q A+ MNG
Sbjct: 210 LFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDMNG 253
Score = 184 (69.8 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 53/171 (30%), Positives = 85/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + L ++F++ G + S +++ D + SRGFGFV E+A++A+
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + V R E +++ YQG +Y NL +
Sbjct: 252 NGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFAPYGMITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 132 (51.5 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 41/166 (24%), Positives = 76/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NVFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + R GF F T E A++ ++ M
Sbjct: 116 YDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNGM 161
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 184 (69.8 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 52/168 (30%), Positives = 84/168 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L +VF++ G S +++ D + +S+GFGFV+ S E AK+A+
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEM 308
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS-YQGFVDSPHKIYAGNLGWGLTSQG 231
+G I G+ + V + V R E M +L+ +G K+Y NL + +
Sbjct: 309 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGV--KLYIKNLDDTIDDEK 366
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR+ F + KV+ E G+S+GFG + F + ED A+ MNG
Sbjct: 367 LRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNG 412
Score = 161 (61.7 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 49/165 (29%), Positives = 85/165 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L E F+ G + S++++ D S+G+ FV + A AI
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEM 215
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + G KV F V R R +L++ F + +Y N G + + L+D
Sbjct: 216 NGKLLKG--CKV-F--VGRFKNRKDREAELRSKASEFTN----VYIKNFGGDMDDERLKD 266
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+F++ E + A++ MNG
Sbjct: 267 VFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNG 310
Score = 110 (43.8 bits), Expect = 0.00098, P = 0.00098
Identities = 39/147 (26%), Positives = 70/147 (47%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T L F+ G V S I D+VT RS G+ +V + +A++A+
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG--LTSQ 230
+ I G+++++ + + R+ +G + +D+ +Y +G L+S+
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNK-TLYEHFSAFGKILSSK 186
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSR 257
+ D QG G A V F+ + R
Sbjct: 187 VMSDD-QGSKGY--AFVHFQNQSAADR 210
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 55/167 (32%), Positives = 89/167 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G + + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGARAKE----FTN----VYIKNFGDDMNDERLK 208
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F G+ G LS KV+ + G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 209 EMF-GKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 181 (68.8 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 53/171 (30%), Positives = 85/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L E+F + G S +++ D +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G + G+++ V + V R E +++ YQG +Y NL G+
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 146 (56.5 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 47/166 (28%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR V++ + + P L+ S G I+ NL + ++ L
Sbjct: 71 TMNFDVIKGRPVRIMWSQ---------RDPSLRKSGVG------NIFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGM 161
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 53/171 (30%), Positives = 86/171 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + +L E+F++ G S +++ D + +S+GFGFV+ E+A +A+
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G +I G+ + V + V R E +L+ YQG +Y NL +
Sbjct: 252 NGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGV-----NLYIKNLDDTID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 171 (65.3 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 50/166 (30%), Positives = 85/166 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+ FV + E A +AI
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKM 158
Query: 175 DGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+G + R V V F R A +G K + F + +Y N G + + L+
Sbjct: 159 NGMLLNDRKVFVGRFKS--RKEREAELGAKAKE----FTN----VYIKNFGEEVDDENLK 208
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F LS KV+ + +G+S+GFGFV++E ED A++ MNG
Sbjct: 209 ELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNG 253
Score = 133 (51.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 43/166 (25%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG V S + D +T RS G+ +V +A+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---------RDPSLRKSGVG------NVFIKNLDKSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + F F T E A+ ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGM 161
Score = 113 (44.8 bits), Expect = 0.00078, P = 0.00078
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+ NL ++ L + F+ G++ SA+++ + RS+GFGFV S EEA +A+
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEM 353
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G +G + + V + R ER A L N Y
Sbjct: 354 NGRIVGSKPLYVALAQ--RKEERKA---HLTNQY 382
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 182 (69.1 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 12 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 70
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 71 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 125
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 126 MDSETGRSKGYGFITFSDSECAKKALEQLNG 156
Score = 147 (56.8 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 154 LNGFELAGRPMKV 166
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 49/164 (29%), Positives = 77/164 (46%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G + + L E F+ G V A I+ DR T R+RGFGFV + A I +
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFA--DPAVAEIVI 64
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP---HKIYAGNLGWGLTSQ 230
+ I GR V+ VPR + + +S QG P KI+ G L +T
Sbjct: 65 TEKHNIDGRLVEAK-KAVPRDDQNM-VNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTES 122
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+ F+ V+++ T R RGFGF+T+++ E ++ L
Sbjct: 123 DFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVL 166
Score = 146 (56.5 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 41/128 (32%), Positives = 62/128 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP S+T S F + GT ++YD T R RGFGF+T S EEA E + L
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDS-EEAVEKVLL 167
Query: 174 FDGSQIGGRTVKVN--FP-EVPRGGERAAMGP-------KLQNSYQGFVDSPHKIYAGNL 223
++ G+ V+V P E+ G R+ +G ++ N G+ + G
Sbjct: 168 KTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVG-- 225
Query: 224 GWGLTSQG 231
G+GL G
Sbjct: 226 GYGLRMDG 233
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 181 (68.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 50/173 (28%), Positives = 86/173 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
G +GGR ++ N+ P P+ + K Q ++ V+ SP +Y G + G
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQET--NTK-QLRFEDVVNQSSPKNCTVYCGGIASG 232
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LT Q +R F ++ +V E+ G+ FV F T E A+ ++NG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNG 279
Score = 141 (54.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 48/180 (26%), Positives = 85/180 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 181 (68.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 49/156 (31%), Positives = 79/156 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG + + T+ + A F + G V + I+ DR+T RGFGFVT A++ +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLE- 125
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ I R V + +PRG + + V KI+ G L L L+
Sbjct: 126 -EDHVIDDRKVDLK-RTLPRGDKDTDIKA---------VSKTRKIFVGGLPPLLEEDELK 174
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269
+ F ++ +++++ +TGRSRGFGFVTF+T ED
Sbjct: 175 NYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQT-ED 209
Score = 139 (54.0 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 42/123 (34%), Positives = 64/123 (52%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP + L F G + +I+YD T RSRGFGFVT E++ + RL
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTF-QTEDSVD--RL 214
Query: 174 F-DGS--QIGGRTVKVNFPEVPRGGE----RA--AMGPKLQ-NSYQGFVDSPHKIYAGNL 223
F DG ++G + V++ E R G R+ A G Q +SY G + + +Y+G
Sbjct: 215 FSDGKVHELGDKQVEIKRAEPKRTGRDNSFRSYGASGKYDQEDSYSGKANEDYSMYSGYG 274
Query: 224 GWG 226
G+G
Sbjct: 275 GYG 277
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 181 (68.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 50/173 (28%), Positives = 86/173 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
G +GGR ++ N+ P P+ + K Q ++ V+ SP +Y G + G
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQET--NTK-QLRFEDVVNQSSPKNCTVYCGGIASG 232
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LT Q +R F ++ +V E+ G+ FV F T E A+ ++NG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNG 279
Score = 141 (54.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 48/180 (26%), Positives = 85/180 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 182 (69.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 49/165 (29%), Positives = 91/165 (55%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL ++T +A +F + G+V ++++D D + FV +A +A++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQTM 104
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + R +KVN+ P G++ + K+ + + F H ++ G+L + +Q LR+
Sbjct: 105 NKRLLLDREMKVNWAVEP--GQQQS---KIDTT-RHF----H-VFVGDLSSEVDNQKLRE 153
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AFQ + AKVI + T +S+G+GFV++ E+ + A++ MNG
Sbjct: 154 AFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNG 198
Score = 168 (64.2 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 46/168 (27%), Positives = 81/168 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L + + L E F G V+ A+++ D T +S+G+GFV+ EEA+ AI
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH----KIYAGNLGWGLTSQ 230
+G +G RT++ N+ + G++ + SY + +Y GN+ LT
Sbjct: 197 NGQWLGRRTIRTNWA-TRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA-SLTED 254
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+R F G ++ IF + +G+ FV F+ + A+ MN
Sbjct: 255 EIRQGFASF-GRITEVRIF-----KMQGYAFVKFDNKDAAAKAIVQMN 296
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 181 (68.8 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 45/165 (27%), Positives = 87/165 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 120
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 121 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 165
Score = 176 (67.0 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 47/170 (27%), Positives = 83/170 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V SP +Y G + GLT
Sbjct: 164 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 223
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V ++ G+ F+ F + E A+ ++NG
Sbjct: 224 QLMRQTFSPFGQIMEIRVFPDK------GYSFIRFSSHESAAHAIVSVNG 267
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 182 (69.1 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Score = 147 (56.8 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 185 (70.2 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 54/171 (31%), Positives = 85/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NL + L ++F++ G + S +++ D + SRGFGFV EEA++A+
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + V R E +++ YQG +Y NL +
Sbjct: 252 NGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 180 (68.4 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 56/165 (33%), Positives = 83/165 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRGFGFV + E A+ AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E +G + F + IY NL + Q L+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-VELGARAME----FTN----IYVKNLHVDVDEQRLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SRGFGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMNG 253
Score = 140 (54.3 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 43/166 (25%), Positives = 77/166 (46%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + R GF F T E A++ S ++ M
Sbjct: 116 YDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNGM 161
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 181 (68.8 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 45/165 (27%), Positives = 87/165 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 179 (68.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 48/170 (28%), Positives = 84/170 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V ++ G+ FV F + E A+ ++NG
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNG 271
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 181 (68.8 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 45/165 (27%), Positives = 87/165 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 180 (68.4 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 48/170 (28%), Positives = 84/170 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V SP+ +Y G + GLT
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTE 227
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V ++ G+ FV F + E A+ ++NG
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFSSHESAAHAIVSVNG 271
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 181 (68.8 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 45/165 (27%), Positives = 87/165 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 179 (68.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 48/170 (28%), Positives = 84/170 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V ++ G+ FV F + E A+ ++NG
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNG 271
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 186 (70.5 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 51/169 (30%), Positives = 85/169 (50%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + A+
Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 101 DELNYTLIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDSAIDNKA 145
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG+
Sbjct: 146 LHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGM 193
Score = 148 (57.2 bits), Expect = 5.1e-08, P = 5.1e-08
Identities = 43/164 (26%), Positives = 80/164 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A AI+
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHV 190
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + IY N+ + + R
Sbjct: 191 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----IYIKNIDPEVEDEEFRK 241
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A++ MN
Sbjct: 242 LFE-KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Score = 95 (38.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 35/140 (25%), Positives = 60/140 (42%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ + ++F + G + SA + D +SRGFGFV + E A+ A+
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDS-EGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 175 DGSQIG------GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
+ ++ GR K + E + A + + YQG +Y NL +
Sbjct: 284 NDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV-----NLYVKNLTDDVD 338
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
LR+ F + SAKV+
Sbjct: 339 DDKLRELFGPYGTITSAKVM 358
Score = 64 (27.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 254 GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F + ++ A+ MN
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMN 438
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 181 (68.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 55/168 (32%), Positives = 86/168 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ S L E+ +AG V S + DRVT +GFGFV E+A AI+
Sbjct: 13 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ +KVN +A+ K N +D I+ GNL + + L
Sbjct: 73 ILNMIKLYGKPIKVN---------KASAHEK--N-----MDVGANIFVGNLDPEVDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +L K++ + +G S+GF F+ F + E +AL+AMNG
Sbjct: 117 YDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNG 164
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 181 (68.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 55/168 (32%), Positives = 86/168 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ S L E+ +AG V S + DRVT +GFGFV E+A AI+
Sbjct: 13 ATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ +KVN +A+ K N +D I+ GNL + + L
Sbjct: 73 ILNMIKLYGKPIKVN---------KASAHEK--N-----MDVGANIFVGNLDPEVDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +L K++ + +G S+GF F+ F + E +AL+AMNG
Sbjct: 117 YDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNG 164
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 34/98 (34%), Positives = 59/98 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
+G + GR ++V + GG+R G + ++ G+
Sbjct: 67 MNGKSVDGRQIRV---DQAGGGDRGYGGNRFESRSGGY 101
Score = 126 (49.4 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 181 (68.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 50/173 (28%), Positives = 86/173 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
G +GGR ++ N+ P P+ + K Q ++ V+ SP +Y G + G
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQET--NTK-QLRFEDVVNQSSPKNCTVYCGGIASG 232
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LT Q +R F ++ +V E+ G+ FV F T E A+ ++NG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNG 279
Score = 141 (54.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 48/180 (26%), Positives = 85/180 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 181 (68.8 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 50/173 (28%), Positives = 86/173 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNF----PEVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWG 226
G +GGR ++ N+ P P+ + K Q ++ V+ SP +Y G + G
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQET--NTK-QLRFEDVVNQSSPKNCTVYCGGIASG 232
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LT Q +R F ++ +V E+ G+ FV F T E A+ ++NG
Sbjct: 233 LTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNG 279
Score = 141 (54.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 48/180 (26%), Positives = 85/180 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 181 (68.8 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 48/167 (28%), Positives = 86/167 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G+L Y M + L+ F G + SA+++ ++ T +S G+GF+ S A+ ++ +
Sbjct: 86 LWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQTY 145
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G+ + V+ NF G + +S + H I+ G+L +T L++
Sbjct: 146 NGTLMPN--VEQNFR---MNWASLGAGERRDDSAE------HTIFVGDLAADVTDYILQE 194
Query: 235 AFQG-QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F+ + AKV+ +R TGRS+G+GFV F + A+ MNGV
Sbjct: 195 TFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGV 241
Score = 142 (55.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 47/169 (27%), Positives = 75/169 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F +V A++V DR+T RS+G+GFV E A+
Sbjct: 178 IFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTE 237
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN--SYQGFVDSPHK-IYAGNLGWGLTSQ 230
+G R +++ P + QN + QG D + I+ G L + +
Sbjct: 238 MNGVLCSTRPMRIG-PAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVAEE 296
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR F L+ K++ G+ GFV F T + AL ++NG
Sbjct: 297 HLRQVFSPYGELVHVKIV----AGKR--CGFVQFGTRASAEQALSSLNG 339
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 180 (68.4 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 48/170 (28%), Positives = 84/170 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTE 216
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V ++ G+ FV F + E A+ ++NG
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNG 260
Score = 162 (62.1 bits), Expect = 4.6e-11, P = 4.6e-11
Identities = 45/165 (27%), Positives = 83/165 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAASALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDT-----SNHFHVFV--------GDLSPEITTEDIKA 113
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 158
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 180 (68.4 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 48/170 (28%), Positives = 83/170 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V E+ G+ FV F T E A+ ++NG
Sbjct: 219 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNG 262
Score = 157 (60.3 bits), Expect = 7.4e-10, P = 7.4e-10
Identities = 44/165 (26%), Positives = 83/165 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + ++F++ G S +++ + ++ + FV +A A+
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T++ ++
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV--------GDLSPEITTEDIKS 115
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 160
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 180 (68.4 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 48/170 (28%), Positives = 83/170 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 218
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V E+ G+ FV F T E A+ ++NG
Sbjct: 219 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNG 262
Score = 157 (60.3 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 44/165 (26%), Positives = 83/165 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + ++F++ G S +++ + ++ + FV +A A+
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T++ ++
Sbjct: 69 NGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV--------GDLSPEITTEDIKS 115
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 116 AFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 160
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 180 (68.4 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 45/165 (27%), Positives = 87/165 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 179 (68.1 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 48/170 (28%), Positives = 84/170 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V ++ G+ FV F + E A+ ++NG
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNG 271
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 184 (69.8 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+ ++L E+F+ G V+S + D V+ +S G+ +V E+ ++AI
Sbjct: 51 SASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAI 110
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P + S G I+ NL + ++
Sbjct: 111 EELNYNPIEGRPCRIMWSQ---------RDPSARRSGDG------NIFIKNLHPAIDNKA 155
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + + G+S+ FGFV +ETAE ++A++ +NG+
Sbjct: 156 LHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENVNGM 203
Score = 160 (61.4 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 48/170 (28%), Positives = 85/170 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + + S ++F+ G + S + D+ +S+GFGFV E A +A+
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ +I G+ + V + R ER +L+ Y+ ++ K ++ NL +
Sbjct: 294 NDKEINGQKIYVGRAQKKR--ERLE---ELKKQYEAVRLEKLAKYQGVNLFVKNLDDTID 348
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
S+ L + F+ + SAKV+ + G+S+GFGFV F T E+ A+ MN
Sbjct: 349 SEKLEEEFKPFGTITSAKVMVDE-AGKSKGFGFVCFTTPEEATKAITEMN 397
Score = 123 (48.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 40/165 (24%), Positives = 76/165 (46%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F+ G + S ++ D +S+ FGFV + E A+ AI
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAIENV 200
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + + + K + F + IY N+ + +
Sbjct: 201 NGMLLNDREVFVG-KHISKKDRES----KFEEMKANFTN----IYVKNIDLNYSEESFEK 251
Query: 235 AFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F P G +++ + + G+S+GFGFV FE E A++ +N
Sbjct: 252 LFS--PFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Score = 115 (45.5 bits), Expect = 0.00045, P = 0.00045
Identities = 39/127 (30%), Positives = 62/127 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V NL ++ S L E F GT+ SA+++ D +S+GFGFV + EEA +AI
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEA-GKSKGFGFVCFTTPEEATKAITEM 396
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ I G+ + V + + R+ + ++Q Q + + AG GL Q +
Sbjct: 397 NTRMINGKPLYVALAQ-RKDVRRSQLEQQIQARNQMRMQNAA---AG----GLPGQFIPP 448
Query: 235 AFQGQPG 241
F GQ G
Sbjct: 449 MFYGQQG 455
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 180 (68.4 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 48/170 (28%), Positives = 83/170 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 234
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V E+ G+ FV F T E A+ ++NG
Sbjct: 235 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNG 278
Score = 141 (54.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 48/180 (26%), Positives = 85/180 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 10 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 69
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 70 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 117
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 118 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 176
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 37/75 (49%), Positives = 46/75 (61%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNL + T L E F+ G V A ++ DR TDRSRGFGFVT S EA+ A+
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 172 RLFDGSQIGGRTVKV 186
DG ++ GR V V
Sbjct: 62 SGMDGKELNGRRVSV 76
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++Y GNL T LR+AF G ++ A V+ +RYT RSRGFGFVT+ + + ++A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 277 MNG 279
M+G
Sbjct: 64 MDG 66
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 180 (68.4 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 48/170 (28%), Positives = 83/170 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V E+ G+ FV F T E A+ ++NG
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNG 279
Score = 141 (54.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 48/180 (26%), Positives = 85/180 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 180 (68.4 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 48/170 (28%), Positives = 83/170 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V E+ G+ FV F T E A+ ++NG
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNG 279
Score = 141 (54.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 48/180 (26%), Positives = 85/180 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 180 (68.4 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 48/170 (28%), Positives = 83/170 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q ++ V+ SP +Y G + GLT
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V E+ G+ FV F T E A+ ++NG
Sbjct: 236 QLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNG 279
Score = 141 (54.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 48/180 (26%), Positives = 85/180 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR----SRGFG-----------FV 159
LYVGNL +T + ++F++ G S +++ ++ R S GF FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+A A+ +G +I G+ VKVN+ P ++ N + FV
Sbjct: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDT-----SNHFHVFV------- 118
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+L +T++ ++ AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 119 -GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGG 177
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 180 (68.4 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 45/165 (27%), Positives = 87/165 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ + ++ Q D H ++ G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVST-QRSQDHFH-VFVGDLSPEITTEDIKA 124
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 125 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 169
Score = 179 (68.1 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 48/170 (28%), Positives = 84/170 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V+ SP +Y G + GLT
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTE 227
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V ++ G+ FV F + E A+ ++NG
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 175 (66.7 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 52/171 (30%), Positives = 85/171 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M L ++F G S +++ D + +S+GFGFV+ E+A++A+
Sbjct: 65 VYIKNFGEDMDDERLKDLF---GPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 120
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ G+ + V + V R E +++ YQG +Y NL G+
Sbjct: 121 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYVKNLDDGID 175
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 176 DERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 224
Score = 152 (58.6 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 47/128 (36%), Positives = 68/128 (53%)
Query: 153 SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN-FPEVPRGGERAAMGPKLQNSYQGF 211
S+G+GFV + E A+ AI +G + R V V F R A +G + + F
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS--RKEREAELGARAKE----F 62
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
+ +Y N G + + L+D F G P L S KV+ + +G+S+GFGFV+FE ED Q
Sbjct: 63 TN----VYIKNFGEDMDDERLKDLF-G-PAL-SVKVMTDE-SGKSKGFGFVSFERHEDAQ 114
Query: 272 SALDAMNG 279
A+D MNG
Sbjct: 115 KAVDEMNG 122
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 181 (68.8 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 51/169 (30%), Positives = 87/169 (51%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+VG+L + M + L F+ V+S +++ ++ T +S G+GFV S A+EA++ F
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQSF 180
Query: 175 DGSQIGG--RTVKVNFPEVPRGGERAAM-GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
G + + ++N+ G +RA+ GP L I+ G+L ++
Sbjct: 181 SGVTMPNAEQPFRLNWASFSTGEKRASENGPDLS------------IFVGDLAPDVSDAV 228
Query: 232 LRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L + F G+ P + AKV+ + TGRS+G+GFV F + A+ MNG
Sbjct: 229 LLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNG 277
Score = 130 (50.8 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 45/176 (25%), Positives = 75/176 (42%)
Query: 115 LYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L ++ + L E FA +V A++V D T RS+G+GFV G E A+
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 174 FDGSQIGGRTVKVNFPEVPR----GGERAAMGPKLQNSYQG---FVDSPHK---IYAGNL 223
+G+ R ++V R G + + L + G D I+ G L
Sbjct: 275 MNGAFCSSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGL 334
Query: 224 GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T + L F ++S K+ +G GFV F + + A+ +NG
Sbjct: 335 DADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGNLNG 384
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 182 (69.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Score = 147 (56.8 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 182 (69.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Score = 147 (56.8 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 182 (69.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Score = 147 (56.8 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 182 (69.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Score = 147 (56.8 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 182 (69.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Score = 147 (56.8 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 182 (69.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Score = 147 (56.8 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 182 (69.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Score = 147 (56.8 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 182 (69.1 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 47/151 (31%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V ++ DR + RS+G +V V AI L G ++ G + V
Sbjct: 169 LEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGL-TGQRVLGVPIIVQA 227
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 228 SQAEKN-RAAAMANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLM 282
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 283 MDSETGRSKGYGFITFSDSECAKKALEQLNG 313
Score = 147 (56.8 bits), Expect = 4.3e-08, P = 4.3e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 183 (69.5 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 53/171 (30%), Positives = 83/171 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV NLP + L ++F++ G + S +++ D + SR FGFV EEA++A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + + V R E +++ YQG +Y NL +
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 307 DDKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 182 (69.1 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 56/165 (33%), Positives = 84/165 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++ D SRGFGFV + E A++AI
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E A +G + F + IY NL + QGL+D
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERE-AELGARALE----FTN----IYVKNLPVDVDEQGLQD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F +LS KV+ + +G SR FGFV FE E+ Q A+ MNG
Sbjct: 210 LFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMNG 253
Score = 132 (51.5 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 41/166 (24%), Positives = 75/166 (45%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + G+ +++ + + G ++ +G I+ NL + ++ L
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVG---------------NIFIKNLEDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV + + R GF F T E A+ + ++ M
Sbjct: 116 YDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGM 161
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 181 (68.8 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 43/165 (26%), Positives = 83/165 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVG++ Y + ++ + FA G + S ++ +D VT + +GF FV E A+ A+
Sbjct: 87 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQ 146
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ +GGR +KV P G+ + +L + + ++IY ++ L+ ++
Sbjct: 147 MNSVMLGGRNIKVGRPGSI--GQAQPIIEQLAEEARAY----NRIYVASIHPDLSDDDIK 200
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S + E TG+ +GFGF+ +E + A+ +MN
Sbjct: 201 SVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSSMN 245
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 183 (69.5 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 50/170 (29%), Positives = 83/170 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V N + L+ +F++ G + SA ++ D + +GFGFV + A +A+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVEKL 298
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ S + G K++ + ER+A +L+ Y+ + Y G N+ L
Sbjct: 299 NDSILEGTDCKLSVCRAQKKSERSA---ELKRKYEALKQERVQRYQGVNLYVKNIEEDLN 355
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
GLRD F + SAKV+ + GRS+GFGFV FE E+ +A+ MN
Sbjct: 356 DDGLRDHFSSFGTITSAKVMVDE-NGRSKGFGFVCFEKPEEATAAVTDMN 404
Score = 154 (59.3 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 46/168 (27%), Positives = 79/168 (47%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L ++ + L E F+ AG V S + D + S G+ +V +A+ A+
Sbjct: 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + RA G I+ NL + ++ +
Sbjct: 117 TMNFEVIHGRPMRIMWSQRDPAARRAGNG---------------NIFIKNLDRVIDNKSV 161
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV + G S+G+GFV FET Q+A++ +NG+
Sbjct: 162 YDTFSLFGNILSCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKVNGM 208
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 41/166 (24%), Positives = 73/166 (43%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL + + S+ + F+ G + S ++ D S+G+GFV + A+ AI
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDD-EGNSKGYGFVHFETEHSAQTAIEKV 205
Query: 175 DGSQIGGRTVKVN-F-PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + + V V F P R E G K N ++ N G L + L
Sbjct: 206 NGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTN-----------VFVKNFGEHLDQEKL 254
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F + G +++ V+ G+ +GFGFV F + A++ +N
Sbjct: 255 SAMFS-KFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 175 (66.7 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 46/167 (27%), Positives = 86/167 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RL N+P++ T + +F + G+V E+ + +R+RG F+ M S EEA A++
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHK-KERNRGLVFIEMASPEEAATALKS 153
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+ + GR +KV++ + + + P+ S V + ++ NL + ++ L+
Sbjct: 154 LESCEYEGRRLKVDYAKTKK---KKTYAPRETPSP---VPT-FNLFVANLAFEARAKHLK 206
Query: 234 DAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F G ++S +VIF RS G+GFV+F+T + ++AL G
Sbjct: 207 EFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQG 253
Score = 114 (45.2 bits), Expect = 0.00018, P = 0.00018
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
L+V NL + + L E F A+ G V S E+++ RS G+GFV+ + ++A+ A+
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250
Query: 174 FDGSQIGGRTVKV 186
F G GR +++
Sbjct: 251 FQGKDFLGRPIRL 263
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 182 (69.1 bits), Expect = 4.6e-13, P = 4.6e-13
Identities = 49/169 (28%), Positives = 86/169 (50%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F G VAS + D VT RS G+ +V ++E+ ++A+
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ G ++ NL + ++
Sbjct: 139 DELNYTLIKGRPCRIMWSQ---------RDPSLRKMGTG------NVFIKNLDPAIDNKA 183
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + G ++G+GFV F++ E +A++ +NG+
Sbjct: 184 LHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEHVNGM 231
Score = 163 (62.4 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 50/170 (29%), Positives = 81/170 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI-RL 173
+Y+ NL +T +++F + G + S +V D+ D+ RGFGFV + E A++A+ L
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDEL 321
Query: 174 FDGSQIG-----GRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
D G GR K + E M + N YQG ++ NL +
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGV-----NLFIKNLQDEVD 376
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L+ F + SAK++ + G+S+GFGFV + T E+ A+ MN
Sbjct: 377 DERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMN 425
Score = 156 (60.0 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 47/164 (28%), Positives = 82/164 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F+ G + S ++ D + + ++G+GFV SVE A AI
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESANAAIEHV 228
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V V R ER + K++ F + +Y NL +T Q D
Sbjct: 229 NGMLLNDKKVYVGH-HVSRR-ERQS---KVEALKANFTN----VYIKNLDTEITEQEFSD 279
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F GQ G +++ + + + RGFGFV + E Q A+D +N
Sbjct: 280 LF-GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 181 (68.8 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 49/169 (28%), Positives = 86/169 (50%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG+L S++ + L ++F+ G+V+S + D +T S G+ +V E ++AI
Sbjct: 37 SASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAI 96
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ G I+ NL + ++
Sbjct: 97 EQLNYTPIKGRLCRIMWSQ---------RDPSLRKKGSG------NIFIKNLHPDIDNKA 141
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS+K+ + G+S+GFGFV FE + A+DA+NG+
Sbjct: 142 LYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALNGM 189
Score = 163 (62.4 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 47/167 (28%), Positives = 79/167 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N+ T E+FA+ G + SA + D + +GFGFV E+A +A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK---IYAGNLGWGLTSQG 231
+ S++ G + V + ER + K +Y+ + ++ ++ NL + +
Sbjct: 280 NDSELNGEKLYVG--RAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEK 337
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L + F + SAKV+ G+S+GFGFV F T E+ A+ N
Sbjct: 338 LEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 150 (57.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 45/167 (26%), Positives = 85/167 (50%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S++I D +S+GFGFV AKEAI
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + R ER + +L+ + + + +Y N+ T +
Sbjct: 184 DALNGMLLNGQEIYVA-PHLSRK-ERDS---QLEETKAHYTN----LYVKNINSETTDEQ 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ F ++SA + + G+ +GFGFV +E ED A++A+N
Sbjct: 235 FQELFAKFGPIVSASLEKDA-DGKLKGFGFVNYEKHEDAVKAVEALN 280
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 178 (67.7 bits), Expect = 6.6e-13, P = 6.6e-13
Identities = 48/165 (29%), Positives = 77/165 (46%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G + + L + F+ G V A I+ DR T R+RGFGF+ ++ I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 174 FDGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
D I GRTV+ VPR + R A L + G KI+ G L +T
Sbjct: 65 MDKHIIDGRTVEAK-KAVPRDDQQVLKRHASPIHLMSPVHGGGGRTKKIFVGGLPSSITE 123
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+ ++ F + V+++ T R RGFGF+TF++ + + L
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVL 168
Score = 126 (49.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/80 (33%), Positives = 45/80 (56%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP S+T F + GT+A ++YD T R RGFGF+T S ++A + +
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-DDAVDRVLH 169
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
++ G+ V+V VP+
Sbjct: 170 KTFHELNGKLVEVK-RAVPK 188
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 176 (67.0 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 47/170 (27%), Positives = 83/170 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 175 DGSQIGGRTVKVNFP-EVPRGGERAAMGPKLQNSYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ P + Q SY V SP +Y G + GLT
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTE 216
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V ++ G+ F+ F + E A+ ++NG
Sbjct: 217 QLMRQTFSPFGQIMEIRVFPDK------GYSFIRFSSHESAAHAIVSVNG 260
Score = 162 (62.1 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 45/165 (27%), Positives = 83/165 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F++ G + +++ D T + + FV A A+
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T++ ++
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDT-----SNHFHVFV--------GDLSPEITTEDIKA 113
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 114 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 158
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 180 (68.4 bits), Expect = 7.0e-13, P = 7.0e-13
Identities = 53/171 (30%), Positives = 81/171 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N + S L +F E G S ++ D RSRGFGFV + +A+ A+
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEM 251
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYAGNLGWGLT 228
+G ++ GR + V + + R GE +++ YQG +Y NL +
Sbjct: 252 NGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGV-----NLYVKNLDDSID 306
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ LR F + SAKV+ + G SRGFGFV F + E+ A+ MNG
Sbjct: 307 DEKLRKEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNG 355
Score = 165 (63.1 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 51/165 (30%), Positives = 80/165 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ N+ S+ + +L + F+ G + S ++V D + S+G+GFV + E A AI
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R A MG K F + +Y N G + S+ L++
Sbjct: 159 NGMLLNDRKVFVGHFK-SRKEREAEMGAKAVE----FTN----VYIKNFGEDIDSEKLKN 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS V+ + GRSRGFGFV F D + A+ MNG
Sbjct: 210 IFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEMNG 253
Score = 126 (49.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 40/166 (24%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L + F+ AG + S + D +T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G I+ N+ + ++ L
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVG---------------NIFIKNMDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E A ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNGM 161
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 35/94 (37%), Positives = 49/94 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV NL S+ L + FA GT+ SA+++ D SRGFGFV S EEA +A+
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEM 353
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G + + + V + R ER A+ L N Y
Sbjct: 354 NGRIVSTKPLYVALAQ--RKEERKAI---LTNQY 382
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 31/79 (39%), Positives = 51/79 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVP 192
+G + GR ++V+ P P
Sbjct: 67 MNGKSVDGRQIRVDQPLRP 85
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 50/158 (31%), Positives = 78/158 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL F + GT+ ++ D T RSRGFGFVT +VEE A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA Q ++ + KI+ G + LR
Sbjct: 68 RP-HKVNGRVVE------PK---RAVSREDSQRP-DAYL-TVKKIFVGGIKEDTEEHHLR 115
Query: 234 DAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDL 270
D F GQ G +++ +R +G+ RGF FVTF+ + +
Sbjct: 116 DYF-GQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSV 152
Score = 109 (43.4 bits), Expect = 0.00042, P = 0.00042
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T + LR F+ L V+ + T RSRGFGFVT+ T E++ +A++A
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 176 (67.0 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 46/170 (27%), Positives = 85/170 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG+L +T+ + FA G ++ A +V D T +S+G+GFV+ + +A+ AI+
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN-SYQGFVD--SPHK--IYAGNLGWGLTS 229
G +GGR ++ N+ +A ++ S+ V+ SP +Y G + GLT
Sbjct: 158 GGQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTE 217
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q +R F ++ +V ++ G+ FV F + E A+ ++NG
Sbjct: 218 QLMRQTFSPFGQIMEVRVFPDK------GYSFVRFNSHESAAHAIVSVNG 261
Score = 159 (61.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 46/165 (27%), Positives = 81/165 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVGNL +T + + ++F + G S +++ D T + + FV A ++
Sbjct: 10 LYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAAASLAAM 67
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G +I G+ VKVN+ P ++ N + FV G+L +T+ +R
Sbjct: 68 NGRKIMGKEVKVNWATSPSSQKKDT-----SNHFHVFV--------GDLSPEITTDDIRA 114
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
AF + A+V+ + TG+S+G+GFV+F D ++A+ M G
Sbjct: 115 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGG 159
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 29/68 (42%), Positives = 47/68 (69%)
Query: 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272
D ++ + G L W + +GLRDAF+ L+ AKV+ ++++GRSRGFGF+TF+ + +
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 273 ALDAMNGV 280
A+ AMNG+
Sbjct: 64 AIAAMNGM 71
Score = 143 (55.4 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 48/168 (28%), Positives = 82/168 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R ++G L ++ + L + F + G + A++V D+ + RSRGFGF+T + EAI
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAA 67
Query: 174 FDGSQIGGRTVKVNFPEVPRGGE-RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G + GRT+ V+ + +GG R G + ++ +G+ D +G G G
Sbjct: 68 MNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRD--RGY-DRDRSRPSGGRGGG------ 118
Query: 233 RDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F+ G+PG + + E + R G G F + +D S+ D G
Sbjct: 119 -DCFKCGKPGHFARECPSE--SSRDGG-G--RFSSKDDRYSSKDDRYG 160
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 33/90 (36%), Positives = 50/90 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+++L+VG L + SSL + F G V A ++ DR T RSRGFGFV+ + A AI
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAI 93
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMG 201
+ DG ++ GR ++VN R++ G
Sbjct: 94 KEMDGKELNGRQIRVNLATERSSAPRSSFG 123
Score = 133 (51.9 bits), Expect = 7.3e-09, P = 7.3e-09
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L WG L+ AF + A VI +R TGRSRGFGFV+F + +A+
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 277 MNG 279
M+G
Sbjct: 96 MDG 98
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 176 (67.0 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 55/169 (32%), Positives = 84/169 (49%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y GN+ +T L E+FA G + S +++ D+S +GFV A AI
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRK---DKS-SYGFVHYFDRRCASMAIMTL 120
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G I G+ +KVN+ A G + S S I+ G+L +T L D
Sbjct: 121 NGRHIFGQPMKVNWAY--------ATGQREDTS------SHFNIFVGDLSPEVTDAALFD 166
Query: 235 AFQGQPGLLS----AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+F S A+V++++ TGRSRGFGFV+F +D Q+A++ MNG
Sbjct: 167 SFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNG 215
Score = 122 (48.0 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 46/155 (29%), Positives = 71/155 (45%)
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAA 199
A +++D+ T RSRGFGFV+ + ++A+ AI +G + R ++ N+ G ++ +
Sbjct: 181 ARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHS 240
Query: 200 MGPK----LQN--SYQGFV----DSPHK------IYAGNLGWGLTSQGLRDAFQGQPGLL 243
K L N S G D+P +Y GNL +T L F L
Sbjct: 241 SDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFY----TL 296
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
A VI E R +GFGFV + T ++ A+ N
Sbjct: 297 GAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGN 331
Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
Identities = 24/78 (30%), Positives = 48/78 (61%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVAS----AEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
++VG+L +T ++L + F+ + +S A +++D+ T RSRGFGFV+ + ++A+ A
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 209
Query: 171 IRLFDGSQIGGRTVKVNF 188
I +G + R ++ N+
Sbjct: 210 INEMNGKWVSSRQIRCNW 227
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 176 (67.0 bits), Expect = 9.8e-13, P = 9.8e-13
Identities = 37/97 (38%), Positives = 59/97 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VGN+PY T L E+F+E G V S ++V+DR + + +GFGF E A A+R
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 175 DGSQIGGRTVKVN--FPEVPRGG-ERAAMGPKLQNSY 208
+G +IGGRT++V+ E R ++ GP+++N Y
Sbjct: 78 NGYEIGGRTLRVDNACTEKSRMEMQQLLQGPQVENPY 114
Score = 117 (46.2 bits), Expect = 0.00015, P = 0.00015
Identities = 26/81 (32%), Positives = 45/81 (55%)
Query: 200 MGPKLQNSYQGFVD-SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258
M K Q Q +D S ++ GN+ + T + L++ F +LS K++F+R +G+ +G
Sbjct: 1 MADKAQE--QSIMDKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKG 58
Query: 259 FGFVTFETAEDLQSALDAMNG 279
FGF ++ E SA+ +NG
Sbjct: 59 FGFCEYKDQETALSAMRNLNG 79
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 174 (66.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 48/168 (28%), Positives = 88/168 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT+ + +GF+ S E+A AI+
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIK 84
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K +D ++ GNL + + L
Sbjct: 85 VLNMIKLHGKPIRVN---------KASQDKKS-------LDVGANLFIGNLDPDVDEKLL 128
Query: 233 RDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F + S K++ + TG SRGFGF+++++ E +A+++M G
Sbjct: 129 YDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTG 176
Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
Identities = 29/87 (33%), Positives = 45/87 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A L++GNL + L + F+ G +AS +I+ D T SRGFGF++ S E + AI
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
Query: 172 RLFDGSQIGGRTVKVNFP-EVPRGGER 197
G + R + V++ + GER
Sbjct: 172 ESMTGQYLSNRQITVSYAYKKDTKGER 198
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 176 (67.0 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 49/168 (29%), Positives = 77/168 (45%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G + + L E F + G + A I+ DR T R+RGFGF+ A+ I
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI-- 73
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAM---GPK--LQNSYQGFVDSPH--KIYAGNLGWG 226
D I GRTV+ VPR ++ P + S+ G KI+ G L
Sbjct: 74 MDKHIIDGRTVEAK-KAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPSS 132
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274
+T ++ F + V+++ T R RGFGF+TF++ E + L
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVL 180
Score = 130 (50.8 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG LP S+T + F + GT+A ++YD T R RGFGF+T S EE+ + +
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDS-EESVDMVLH 181
Query: 174 FDGSQIGGRTVKVNFPEVPR 193
++ G+ V+V VP+
Sbjct: 182 KTFHELNGKMVEVK-RAVPK 200
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 50/158 (31%), Positives = 79/158 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL F + GT+ ++ D T RSRGFGFVT +VEE A+
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA +++S + KI+ G + LR
Sbjct: 71 RP-HKVDGRVVE------PK---RAV---SIEDSQRPGAYLNMKIFVGAIKEDTEEHHLR 117
Query: 234 DAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDL 270
D F GQ G +++ +R +G+ RGF FVTF+ + +
Sbjct: 118 DYF-GQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSV 154
Score = 109 (43.4 bits), Expect = 0.00027, P = 0.00027
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T + LR F+ L V+ + T RSRGFGFVT+ T E++ +A++A
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 70
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 177 (67.4 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 50/167 (29%), Positives = 80/167 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V L + + L F + G V A+IV DRV+ RS+G G+V AI+L
Sbjct: 176 IFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVEFKDESSVAPAIQL- 234
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLGWGLTSQGLR 233
G ++ G + E + R A + + + +P H++Y GN+ + + L+
Sbjct: 235 TGQKLLGIPIIAQLTEAEKN--RQARNSEASSGNKH--SAPFHRLYVGNIHFSIDENDLQ 290
Query: 234 DAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F+ P G L + + TGRSRG+GFV F + AL+ MNG
Sbjct: 291 SVFE--PFGELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNG 335
Score = 150 (57.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 38/121 (31%), Positives = 63/121 (52%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGN+ +S+ + L VF G + ++ D T RSRG+GFV +A+EA+
Sbjct: 274 RLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKDE-TGRSRGYGFVQFRDPNQAREALEK 332
Query: 174 FDGSQIGGRTVKV---NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+G +GGR ++V N P +R Q+++QG +++G+ G G+ +
Sbjct: 333 MNGYDLGGRAIRVGLGNDKFTPENTQRTQSQSANQSNFQG------SMFSGSGGRGVQAG 386
Query: 231 G 231
G
Sbjct: 387 G 387
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 176 (67.0 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 46/151 (30%), Positives = 75/151 (49%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L E F+ G V I+ DR + RS+G ++ AI L G ++ G + V
Sbjct: 165 LEEFFSAVGKVRDVRIISDRNSRRSKGIAYIEFVDSTSVPLAIGL-SGQRLLGVPIIVQA 223
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AA+ LQ G P ++Y G+L + +T LR F+ + S +++
Sbjct: 224 SQAEKN-RAAALANNLQKGSAG----PMRLYVGSLHFNITEDMLRGIFEPFGRIDSIQLM 278
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF AE + AL+ +NG
Sbjct: 279 MDSETGRSKGYGFITFSDAECAKKALEQLNG 309
Score = 148 (57.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + S +++ D T RS+G+GF+T E AK+A+
Sbjct: 247 RLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 306
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR +KV
Sbjct: 307 LNGFELAGRPMKV 319
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 168 (64.2 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 45/151 (29%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L + F+ G V I+ DR + RS+G +V ++ AI L G ++ G + V
Sbjct: 12 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL-TGQRLLGVPIIVQA 70
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + + ++
Sbjct: 71 SQAEKN-RLAAMANNLQKGNGG----PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM 125
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 126 KDSDTGRSKGYGFITFSDSECARRALEQLNG 156
Score = 130 (50.8 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + + ++ D T RS+G+GF+T E A+ A+
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 153
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR ++V
Sbjct: 154 LNGFELAGRPMRV 166
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 137 (53.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F+ G V SA+++ D+V S G+GFV + ++A+ AI
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTL 81
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV+F
Sbjct: 82 NGLRLQSKTIKVSF 95
Score = 125 (49.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL L ++F G V + +++ D T++ +GFGFVTM + EEA AI
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 175 DGSQIGGRTVKVNF 188
+G ++G +T++V+F
Sbjct: 306 NGYRLGDKTLQVSF 319
Score = 122 (48.0 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+ LP +MT + ++F G + ++ ++ D+ T SRG F+ EA+EAI
Sbjct: 106 ANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIA 165
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAM 200
F+G + G + + V F P + A+
Sbjct: 166 SFNGHKPPGSSEPITVKFAANPNQSKNMAL 195
Score = 84 (34.6 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + + D F +++++V+ ++ TG SRG F+ F+ + + A+ +
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 278 NG 279
NG
Sbjct: 168 NG 169
Score = 74 (31.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
I+ NLG L F + + KVI + T + +GFGFVT E+ A+ ++
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 278 NG 279
NG
Sbjct: 306 NG 307
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 45/153 (29%), Positives = 77/153 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT-SQGL 232
+G + GR ++V+ + + + + G Y+G + G G G S+G
Sbjct: 67 MNGKSVDGRQIRVD--QAGKSSDNRSRG------YRGGSAGGRGFFRGGRGRGRGFSRGG 118
Query: 233 RDAFQGQPGLLSAKVIF----ERYTGRSRGFGF 261
D G S + + Y+ RS+G G+
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGY 151
Score = 126 (49.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 45/153 (29%), Positives = 77/153 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT-SQGL 232
+G + GR ++V+ + + + + G Y+G + G G G S+G
Sbjct: 67 MNGKSVDGRQIRVD--QAGKSSDNRSRG------YRGGSAGGRGFFRGGRGRGRGFSRGG 118
Query: 233 RDAFQGQPGLLSAKVIF----ERYTGRSRGFGF 261
D G S + + Y+ RS+G G+
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGY 151
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 45/153 (29%), Positives = 77/153 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT-SQGL 232
+G + GR ++V+ + + + + G Y+G + G G G S+G
Sbjct: 67 MNGKSVDGRQIRVD--QAGKSSDNRSRG------YRGGSAGGRGFFRGGRGRGRGFSRGG 118
Query: 233 RDAFQGQPGLLSAKVIF----ERYTGRSRGFGF 261
D G S + + Y+ RS+G G+
Sbjct: 119 GDRGYGGSRFESRSGGYGGSRDYYSSRSQGGGY 151
Score = 126 (49.4 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 172 (65.6 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 53/160 (33%), Positives = 81/160 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK-EAIR 172
++++G L + T L + F + G V + ++ D VT RSRGFGFVT V++A + +
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTF--VDQAGVDKVL 78
Query: 173 LFDGSQIGGRTV--KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
++ +T+ KV FP RA PKL V KI+ G L T +
Sbjct: 79 AQTRHELDSKTIDPKVAFPR------RAQ--PKL-------VTRTKKIFVGGLSVNTTIE 123
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
++ F + A ++F++ T R RGFGFVTFE ED+
Sbjct: 124 DVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFEN-EDV 162
Score = 111 (44.1 bits), Expect = 0.00054, P = 0.00054
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 213 DSPH---KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264
DSPH K++ G L W T +GL+D F + + V+ + T RSRGFGFVTF
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTF 68
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 172 (65.6 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 50/159 (31%), Positives = 79/159 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G L + T L E F + G V ++ D +T RSRGFGFVT + + +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 79
Query: 174 FDGSQIGGRTV--KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
++ +T+ KV FP RA PK+ V KI+ G L T +
Sbjct: 80 QSRHELDSKTIDPKVAFPR------RAQ--PKM-------VTRTKKIFVGGLSVNTTVED 124
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
++ F+ + A ++F++ T R RGFGFVTFE+ ED+
Sbjct: 125 VKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFES-EDI 162
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 213 DSPH---KIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTF 264
DSPH K++ G L W T +GLR+ F GQ G + V+ + T RSRGFGFVTF
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTF 68
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 173 (66.0 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 51/168 (30%), Positives = 88/168 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 AAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +L K++ + TG S+G+ F+ F + + +A++AMNG
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 171 (65.3 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 43/108 (39%), Positives = 59/108 (54%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YVG LPY +T ++ VF+ G+V + +IV DR R + +GFVT + A +AI
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDAIEDM 67
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGN 222
DG IGGR V+VN RGG R GP + G+ SP + GN
Sbjct: 68 DGKSIGGRAVRVN-DVTTRGG-RMNPGPGRLQPHGGWDRSPDRRSDGN 113
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 169 (64.5 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 56/171 (32%), Positives = 81/171 (47%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ RLY+GNLP ++T + E F+ GT EI GFGF+ +A++ +
Sbjct: 6 STRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKL------MNGFGFIEYEDAMDARDIV 59
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL--TS 229
F GS G + V F PR E + N + P + + GL TS
Sbjct: 60 PAFHGSDFKGERLTVQFARGPRRKENFPVPTDRPN-----LPRPRRTIFRMIISGLPETS 114
Query: 230 -QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
Q L+D F Q GL V++ TGR G G V FETA DL++A++ ++G
Sbjct: 115 WQDLKD-FARQSGL---DVVYSE-TGREPGRGIVEFETANDLKTAVEKLDG 160
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 171 (65.3 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 50/159 (31%), Positives = 79/159 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G L + T L E F + G V ++ D +T RSRGFGFVT + + +
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 59
Query: 174 FDGSQIGGRTV--KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
++ +T+ KV FP RA PK+ V KI+ G L T +
Sbjct: 60 QSRHELDSKTIDPKVAFPR------RAQ--PKM-------VTRTKKIFVGGLSVNTTVED 104
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
++ F+ + A ++F++ T R RGFGFVTFE+ ED+
Sbjct: 105 VKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDI 142
Score = 111 (44.1 bits), Expect = 0.00052, P = 0.00052
Identities = 39/148 (26%), Positives = 65/148 (43%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG L + T + + F + G V A +++D+ T+R RGFGFVT S E+ E +
Sbjct: 90 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCE 148
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+I + V E + + M P + V P+ + A LG G+
Sbjct: 149 IHFHEINNKMV-----ECKKAQPKEVMSPTGSARGRSRV-MPYGMDAFMLGIGML----- 197
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGF 261
G PG + YTG + G+ +
Sbjct: 198 ----GYPGFQATTYASRSYTGLAPGYTY 221
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 173 (66.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/168 (30%), Positives = 88/168 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +L K++ + TG S+G+ F+ F + + +A++AMNG
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 30/82 (36%), Positives = 53/82 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL + F++ G + + + +R T+RSRGFGFVT + ++AK+A+
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 174 FDGSQIGGRTVKVNFPEVPRGG 195
+G + GRT++V+ E +GG
Sbjct: 66 MNGKSVDGRTIRVD--EAGKGG 85
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 29/63 (46%), Positives = 37/63 (58%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T Q L DAF + + V R T RSRGFGFVTFE +D + AL+
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 277 MNG 279
MNG
Sbjct: 66 MNG 68
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 32/74 (43%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + T SL +VF++ G VA +V DR + RSRGFGFVT + E+AK+A+
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T + L F + V+ +R + RSRGFGFVTFE ED + A+ A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 176 (67.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 49/167 (29%), Positives = 81/167 (48%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N M +L +F G V S +++ D +S+GFGFV+ E+A++A+
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ--GFVDSPHKIYAGNLGWGLTSQGL 232
+G ++ G+ + V P + + K + Q G +Y NL G+ + L
Sbjct: 252 NGKELNGKHIYVG-PAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F + S KV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 311 QKEFSPFGTITSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNG 355
Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 54/166 (32%), Positives = 87/166 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + F+ G + S ++V D + S+G GFV + E A+ AI
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE--NGSKGHGFVHFETEEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + ER A +L + F + +Y N G + + L
Sbjct: 159 NGMLLNDRKVFVG--QFKSRKEREA---ELGTRTKEFTN----VYIKNFGDRMDDKTLNG 209
Query: 235 AFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F G+ G +LS KV+ + G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LF-GRFGQVLSVKVMTDE-GGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 135 (52.6 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 45/166 (27%), Positives = 74/166 (44%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D +T RS G+ V +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I G+ V++ + + P L+ S G ++ NL + ++ L
Sbjct: 71 TMNFDVIKGKPVRIMWSQ---------RDPSLRRSGVG------NVFIKNLNKTIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAM 277
D F +LS KV+ + + GF F T E AE ++ M
Sbjct: 116 YDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNGM 161
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 173 (66.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/168 (30%), Positives = 88/168 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +L K++ + TG S+G+ F+ F + + +A++AMNG
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 173 (66.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/168 (30%), Positives = 88/168 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +L K++ + TG S+G+ F+ F + + +A++AMNG
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 173 (66.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/168 (30%), Positives = 88/168 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +L K++ + TG S+G+ F+ F + + +A++AMNG
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 173 (66.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/168 (30%), Positives = 88/168 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +L K++ + TG S+G+ F+ F + + +A++AMNG
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 173 (66.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/168 (30%), Positives = 88/168 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +L K++ + TG S+G+ F+ F + + +A++AMNG
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 173 (66.0 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 51/168 (30%), Positives = 88/168 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +YVG L ++ L E+F +AG V + + DRVT + +G+GFV S E+A AI+
Sbjct: 13 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 72
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN +A+ K N +D I+ GNL + + L
Sbjct: 73 IMNMIKLYGKPIRVN---------KASAHNK--N-----LDVGANIFIGNLDPEIDEKLL 116
Query: 233 RDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
D F +L K++ + TG S+G+ F+ F + + +A++AMNG
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNG 164
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 171 (65.3 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 50/159 (31%), Positives = 79/159 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G L + T L E F + G V ++ D +T RSRGFGFVT + + +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 79
Query: 174 FDGSQIGGRTV--KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
++ +T+ KV FP RA PK+ V KI+ G L T +
Sbjct: 80 QSRHELDSKTIDPKVAFPR------RAQ--PKM-------VTRTKKIFVGGLSVNTTVED 124
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
++ F+ + A ++F++ T R RGFGFVTFE+ ED+
Sbjct: 125 VKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDI 162
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 213 DSPH---KIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTF 264
DSPH K++ G L W T +GLR+ F GQ G + V+ + T RSRGFGFVTF
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Score = 111 (44.1 bits), Expect = 0.00057, P = 0.00057
Identities = 39/148 (26%), Positives = 65/148 (43%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG L + T + + F + G V A +++D+ T+R RGFGFVT S E+ E +
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCE 168
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+I + V E + + M P + V P+ + A LG G+
Sbjct: 169 IHFHEINNKMV-----ECKKAQPKEVMSPTGSARGRSRV-MPYGMDAFMLGIGML----- 217
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGF 261
G PG + YTG + G+ +
Sbjct: 218 ----GYPGFQATTYASRSYTGLAPGYTY 241
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 170 (64.9 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 48/166 (28%), Positives = 81/166 (48%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A +Y+GNL +T S L E+ +AG V + I DRV + GFGF ++ + A +
Sbjct: 11 ATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQ 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + ++ G+ ++VN RG +G L + GNL + + L
Sbjct: 71 ILNQVKLFGKPIRVNRASQDRG-VNTLIGANL--------------FVGNLDPLVDERVL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
D F L+ A + GRS+G+GFV++++ E +A++AMN
Sbjct: 116 YDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMN 161
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 171 (65.3 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 51/160 (31%), Positives = 81/160 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G L + + SL + F G ++ A ++ D T RSRGFGFVT + L
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV--L 87
Query: 174 FDGS-QIGGRTV--KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
G+ ++ G+ V KV FP RA PK+ V KI+ G L T +
Sbjct: 88 TQGTHELDGKKVDPKVAFPR------RAH--PKM-------VTRTKKIFVGGLSAPTTLE 132
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
++ F+ + A ++F++ T R RGFGFVTF++ ED+
Sbjct: 133 DVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQS-EDV 171
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 50/153 (32%), Positives = 76/153 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL F + GT+ ++ D T RSRGFGFVT +VEE A+
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA Q G + KI+ G + LR
Sbjct: 94 RP-HKVDGRVVE------PK---RAVSREDSQRP--GAHLTVKKIFVGGIKEDTEEHHLR 141
Query: 234 DAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFE 265
D F+ Q G + +++ +R +G+ RGF FVTF+
Sbjct: 142 DYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFD 173
Score = 109 (43.4 bits), Expect = 0.00038, P = 0.00038
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T + LR F+ L V+ + T RSRGFGFVT+ T E++ +A++A
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 93
>UNIPROTKB|F1M460 [details] [associations]
symbol:F1M460 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00569538
ProteinModelPortal:F1M460 Ensembl:ENSRNOT00000043465
ArrayExpress:F1M460 Uniprot:F1M460
Length = 224
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 49/162 (30%), Positives = 78/162 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L +G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE A+
Sbjct: 9 KLLIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAV-C 67
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 68 ARPHKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 116
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
D F+ + + +V+ + +G+ RGF FVTF+ + + +D
Sbjct: 117 DYFEKYGKIETIEVMEDSQSGKKRGFAFVTFDDHDTVDKIVD 158
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 169 (64.5 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 49/152 (32%), Positives = 76/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE +A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 95 ARPHKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
D F+ + + +V+ +R +G+ RGF FVTF+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 169 (64.5 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 49/152 (32%), Positives = 76/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE +A
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 72
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 73 ARPHKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
D F+ + + +V+ +R +G+ RGF FVTF+
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 153
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 170 (64.9 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 50/159 (31%), Positives = 79/159 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G L + T L E F + G V ++ D +T RSRGFGFVT + + +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 79
Query: 174 FDGSQIGGRTV--KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
++ +T+ KV FP RA PK+ V KI+ G L T +
Sbjct: 80 QSRHELDSKTIDPKVAFPR------RAQ--PKM-------VTRTKKIFVGGLSVNTTVED 124
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
++ F+ + A ++F++ T R RGFGFVTFE+ ED+
Sbjct: 125 VKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDI 162
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 213 DSPH---KIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTF 264
DSPH K++ G L W T +GLR+ F GQ G + V+ + T RSRGFGFVTF
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Score = 109 (43.4 bits), Expect = 0.00099, P = 0.00099
Identities = 39/148 (26%), Positives = 64/148 (43%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG L + T + F + G V A +++D+ T+R RGFGFVT S E+ E +
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCE 168
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+I + V E + + M P + V P+ + A LG G+
Sbjct: 169 IHFHEINNKMV-----ECKKAQPKEVMSPTGSARGRSRV-MPYGMDAFMLGIGML----- 217
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGF 261
G PG + YTG + G+ +
Sbjct: 218 ----GYPGFQATTYASRSYTGLAPGYTY 241
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 170 (64.9 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 50/159 (31%), Positives = 79/159 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G L + T L E F + G V ++ D +T RSRGFGFVT + + +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 79
Query: 174 FDGSQIGGRTV--KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
++ +T+ KV FP RA PK+ V KI+ G L T +
Sbjct: 80 QSRHELDSKTIDPKVAFPR------RAQ--PKM-------VTRTKKIFVGGLSVNTTVED 124
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
++ F+ + A ++F++ T R RGFGFVTFE+ ED+
Sbjct: 125 VKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDI 162
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 213 DSPH---KIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTF 264
DSPH K++ G L W T +GLR+ F GQ G + V+ + T RSRGFGFVTF
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Score = 109 (43.4 bits), Expect = 0.00099, P = 0.00099
Identities = 39/148 (26%), Positives = 64/148 (43%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG L + T + F + G V A +++D+ T+R RGFGFVT S E+ E +
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCE 168
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+I + V E + + M P + V P+ + A LG G+
Sbjct: 169 IHFHEINNKMV-----ECKKAQPKEVMSPTGSARGRSRV-MPYGMDAFMLGIGML----- 217
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGF 261
G PG + YTG + G+ +
Sbjct: 218 ----GYPGFQATTYASRSYTGLAPGYTY 241
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 170 (64.9 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 50/159 (31%), Positives = 79/159 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++++G L + T L E F + G V ++ D +T RSRGFGFVT + + +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD-QAGVDKVLA 79
Query: 174 FDGSQIGGRTV--KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
++ +T+ KV FP RA PK+ V KI+ G L T +
Sbjct: 80 QSRHELDSKTIDPKVAFPR------RAQ--PKM-------VTRTKKIFVGGLSVNTTVED 124
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270
++ F+ + A ++F++ T R RGFGFVTFE+ ED+
Sbjct: 125 VKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDI 162
Score = 115 (45.5 bits), Expect = 0.00020, P = 0.00020
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 213 DSPH---KIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTF 264
DSPH K++ G L W T +GLR+ F GQ G + V+ + T RSRGFGFVTF
Sbjct: 14 DSPHDPCKMFIGGLSWQTTQEGLREYF-GQFGEVKECLVMRDPLTKRSRGFGFVTF 68
Score = 109 (43.4 bits), Expect = 0.00099, P = 0.00099
Identities = 39/148 (26%), Positives = 64/148 (43%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG L + T + F + G V A +++D+ T+R RGFGFVT S E+ E +
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCE 168
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
+I + V E + + M P + V P+ + A LG G+
Sbjct: 169 IHFHEINNKMV-----ECKKAQPKEVMSPTGSARGRSRV-MPYGMDAFMLGIGML----- 217
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGF 261
G PG + YTG + G+ +
Sbjct: 218 ----GYPGFQATTYASRSYTGLAPGYTY 241
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 148 (57.2 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 130 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 189
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 190 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 235
Score = 126 (49.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 46 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 105
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 106 NGLRLQTKTIKVSY 119
Score = 122 (48.0 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 330 NGYRLGDRVLQVSF 343
Score = 89 (36.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 278 NG 279
NG
Sbjct: 192 NG 193
Score = 66 (28.3 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 296 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 331
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVG+L Y +T+ L F + G + A+++ DR T RS+GF F+T G+ + A+EA+
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 174 FDGSQIGGRTVKVNFPEVPRGGER 197
+G + GR ++VN G R
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRR 102
Score = 135 (52.6 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQS 272
S +KIY G+L + +T+ L+ F GQ G + AK+I +R TGRS+GF F+T+ T + Q
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFF-GQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 273 ALDAMNGV 280
A+ NG+
Sbjct: 75 AVSKANGI 82
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 30/84 (35%), Positives = 50/84 (59%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++YVG+L Y +T+ L F + G + A+++ DR T RS+GF F+T G+ + A+EA+
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 174 FDGSQIGGRTVKVNFPEVPRGGER 197
+G + GR ++VN G R
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRR 102
Score = 135 (52.6 bits), Expect = 4.3e-09, P = 4.3e-09
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQS 272
S +KIY G+L + +T+ L+ F GQ G + AK+I +R TGRS+GF F+T+ T + Q
Sbjct: 16 SQNKIYVGSLSYDVTADELQSFF-GQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQE 74
Query: 273 ALDAMNGV 280
A+ NG+
Sbjct: 75 AVSKANGI 82
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 165 (63.1 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 50/153 (32%), Positives = 76/153 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL F + GT+ ++ D T RSRGFGFVT +VEE A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA Q G + KI+ G + LR
Sbjct: 75 RP-HKVDGRVVE------PK---RAVSREDSQRP--GAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 234 DAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFE 265
D F+ Q G + +++ +R +G+ RGF FVTF+
Sbjct: 123 DYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFD 154
Score = 109 (43.4 bits), Expect = 0.00055, P = 0.00055
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T + LR F+ L V+ + T RSRGFGFVT+ T E++ +A++A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 171 (65.3 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 49/166 (29%), Positives = 79/166 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + T L E+F G V A+I+ + RG G V E ++AI F
Sbjct: 124 IFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK--GHHRGMGTVEFTKNESVQDAISKF 181
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
DG+ R + V P E A K + +D+ +++ NL + + Q L+D
Sbjct: 182 DGALFMDRKLMVRQDNPPP--EAAKEFSKKATREE--IDNGFEVFIINLPYSMNWQSLKD 237
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F+ +L A V + + G SRGFG V + T +++ A+D NG+
Sbjct: 238 MFKECGHVLRADVELD-FNGFSRGFGSVIYPTEDEMIRAIDTFNGM 282
Score = 121 (47.7 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NLPYSM SL ++F E G V A++ D SRGFG V + +E AI F
Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVLRADVELD-FNGFSRGFGSVIYPTEDEMIRAIDTF 279
Query: 175 DGSQIGGRTVKV 186
+G ++ GR ++V
Sbjct: 280 NGMEVEGRVLEV 291
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 169 (64.5 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 49/152 (32%), Positives = 76/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE +A
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 72
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 73 ARPHKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 121
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
D F+ + + +V+ +R +G+ RGF FVTF+
Sbjct: 122 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 153
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 170 (64.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 51/170 (30%), Positives = 82/170 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT------MGSVEEA 167
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +G+V +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 168 KEAIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ DG I + T + PE R E GP+ NS +KI+ G +
Sbjct: 61 RP--HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS------KSNKIFVGGIPH 112
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
LR+ F+ + +I++ R RGFGF+TFE + + A++
Sbjct: 113 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 162
Score = 121 (47.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
I G+ V+V E PR + A G
Sbjct: 164 HF-HDIMGKKVEVKRAE-PRDSKSQAPG 189
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 170 (64.9 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 46/164 (28%), Positives = 76/164 (46%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 59
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ GR + P PRG + PK Q + + +KI+ G +
Sbjct: 60 SRPHTLDGRNIDPK-PCTPRGMQPERTRPKEGWQKGSRSDNNKSNKIFVGGIPHNCGETE 118
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
LR+ F+ + +I++ R RGFGF+TFE + + A++
Sbjct: 119 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 162
Score = 124 (48.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 163
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGP 202
I G+ V+V E PR + GP
Sbjct: 164 HF-HDIMGKKVEVKRAE-PRDSKSQTPGP 190
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 148 (57.2 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 237
Score = 126 (49.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 108 NGLRLQTKTIKVSY 121
Score = 122 (48.0 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 345 NGYRLGDRVLQVSF 358
Score = 89 (36.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 278 NG 279
NG
Sbjct: 194 NG 195
Score = 66 (28.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 311 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 346
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 148 (57.2 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 237
Score = 126 (49.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 108 NGLRLQTKTIKVSY 121
Score = 122 (48.0 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 345 NGYRLGDRVLQVSF 358
Score = 89 (36.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 278 NG 279
NG
Sbjct: 194 NG 195
Score = 66 (28.3 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 311 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 346
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 170 (64.9 bits), Expect = 3.7e-12, P = 3.7e-12
Identities = 51/170 (30%), Positives = 82/170 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT------MGSVEEA 167
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +G+V +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 KEAIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ DG I + T + PE R E GP+ NS +KI+ G +
Sbjct: 71 RP--HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS------KSNKIFVGGIPH 122
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
LR+ F+ + +I++ R RGFGF+TFE + + A++
Sbjct: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Score = 121 (47.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
I G+ V+V E PR + A G
Sbjct: 174 HF-HDIMGKKVEVKRAE-PRDSKSQAPG 199
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 170 (64.9 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 51/170 (30%), Positives = 82/170 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT------MGSVEEA 167
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +G+V +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 KEAIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ DG I + T + PE R E GP+ NS +KI+ G +
Sbjct: 71 RP--HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS------KSNKIFVGGIPH 122
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
LR+ F+ + +I++ R RGFGF+TFE + + A++
Sbjct: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Score = 121 (47.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
I G+ V+V E PR + A G
Sbjct: 174 HF-HDIMGKKVEVKRAE-PRDSKSQAPG 199
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 170 (64.9 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 51/170 (30%), Positives = 82/170 (48%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT------MGSVEEA 167
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +G+V +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 168 KEAIRLFDGSQIGGR--TVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225
+ DG I + T + PE R E GP+ NS +KI+ G +
Sbjct: 71 RP--HTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNS------KSNKIFVGGIPH 122
Query: 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
LR+ F+ + +I++ R RGFGF+TFE + + A++
Sbjct: 123 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Score = 121 (47.7 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
I G+ V+V E PR + A G
Sbjct: 174 HF-HDIMGKKVEVKRAE-PRDSKSQAPG 199
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 148 (57.2 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 197 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 242
Score = 126 (49.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 113 NGLRLQTKTIKVSY 126
Score = 122 (48.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 350 NGYRLGDRVLQVSF 363
Score = 89 (36.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 278 NG 279
NG
Sbjct: 199 NG 200
Score = 66 (28.3 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 316 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 351
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 36/88 (40%), Positives = 49/88 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVG++ Y T L +F+ AGTV S I+ D T RS+G G+V M + EEAKEAI
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAA 199
DG+ + R + V+ + R A
Sbjct: 62 ETLDGALLRNRVITVSVARPQKQATRPA 89
Score = 95 (38.5 bits), Expect = 0.00018, P = 0.00018
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++Y G++ + T LR F + S +I + TGRS+G G+V T E+ + A++
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 277 MNG 279
++G
Sbjct: 64 LDG 66
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 36/88 (40%), Positives = 49/88 (55%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A LYVG++ Y T L +F+ AGTV S I+ D T RS+G G+V M + EEAKEAI
Sbjct: 2 AKELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAI 61
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAA 199
DG+ + R + V+ + R A
Sbjct: 62 ETLDGALLRNRVITVSVARPQKQATRPA 89
Score = 95 (38.5 bits), Expect = 0.00018, P = 0.00018
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++Y G++ + T LR F + S +I + TGRS+G G+V T E+ + A++
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 277 MNG 279
++G
Sbjct: 64 LDG 66
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 47/167 (28%), Positives = 80/167 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V N+ + L E+F E G S +++ D + +S+GFGFV + E A++A+
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDL 95
Query: 175 DGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
G I G+ + V + + R E +L+ + IY NL + + L
Sbjct: 96 HGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGV-PIYIKNLDETINDEKL 154
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
++ F + AKV+ E G+ +GFG V F + E+ A+D MNG
Sbjct: 155 KEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNG 199
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 170 (64.9 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 44/168 (26%), Positives = 84/168 (50%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++G+L M + L VF G +A+++ ++ S G+GF+ + A+ ++ +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQTY 141
Query: 175 DGSQIGG--RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+G+ + + ++N+ ++ G R A GP+ H ++ G+L +T L
Sbjct: 142 NGAPMPSSEQAFRLNWAQLGAGERRQAEGPE------------HTVFVGDLAPDVTDHML 189
Query: 233 RDAFQG-QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ F+ + AKV+ +R TGRS+G+GFV F + A+ MNG
Sbjct: 190 TETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNG 237
Score = 125 (49.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 47/170 (27%), Positives = 75/170 (44%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DR T RS+G+GFV E A+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGP-KLQNSY--QGFVDSPHK-IYAGNLGWGLTS 229
+G R ++ P + + M P QN+ G D + I+ G + +T
Sbjct: 235 MNGQYCSSRPMRTG-PAANK--KPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTE 291
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L+ F GQ G +++ + R GFV + + AL +NG
Sbjct: 292 DDLKSVF-GQFG----ELVHVKIPAGKR-CGFVQYANRACAEQALSVLNG 335
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 148 (57.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 185 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 230
Score = 126 (49.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 122 (48.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 352 NGYRLGDRVLQVSF 365
Score = 89 (36.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NG 279
NG
Sbjct: 187 NG 188
Score = 66 (28.3 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 318 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 148 (57.2 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 185 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 230
Score = 126 (49.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 122 (48.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 352 NGYRLGDRVLQVSF 365
Score = 89 (36.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NG 279
NG
Sbjct: 187 NG 188
Score = 66 (28.3 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 318 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 165 (63.1 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 48/163 (29%), Positives = 77/163 (47%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL + T+ LAE F++ G V A++ D S+GFGF+ + E A++A
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARD-ARGLSKGFGFIYFETPEAAQKACEEA 133
Query: 175 DGSQIGGRTVKVNFPEVP--RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ + GR + V P + + G R AM N + S +Y GN+ + T L
Sbjct: 134 NNTFWHGRRINVA-PRIKASKPGNRDAM-----NQEERTPTS--SLYIGNIPYESTDAAL 185
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
+ FQ GL ++ +R TG RGF F+ E A++
Sbjct: 186 NNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVE 228
Score = 130 (50.8 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LY+GN+PY T ++L +F + + I DR T RGF VE A +A+
Sbjct: 171 LYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHADFKDVESATKAVEKV 230
Query: 175 DGSQIGGRTVKVNF--PEVPRGGER 197
++ GRT++V++ P VPR ER
Sbjct: 231 KLMELMGRTLRVDYSTPRVPRN-ER 254
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 169 (64.5 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 49/152 (32%), Positives = 76/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE +A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 95 ARPHKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
D F+ + + +V+ +R +G+ RGF FVTF+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 169 (64.5 bits), Expect = 4.0e-12, P = 4.0e-12
Identities = 49/152 (32%), Positives = 76/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE +A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 95 ARPHKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
D F+ + + +V+ +R +G+ RGF FVTF+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 169 (64.5 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 49/152 (32%), Positives = 76/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE +A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 95 ARPHKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
D F+ + + +V+ +R +G+ RGF FVTF+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 169 (64.5 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 49/152 (32%), Positives = 76/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE +A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 95 ARPHKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
D F+ + + +V+ +R +G+ RGF FVTF+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 169 (64.5 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 49/152 (32%), Positives = 76/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE +A
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEV-DAAMC 94
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 95 ARPHKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 143
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
D F+ + + +V+ +R +G+ RGF FVTF+
Sbjct: 144 DYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 175
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 148 (57.2 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 237
Score = 126 (49.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 108 NGLRLQTKTIKVSY 121
Score = 122 (48.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 359 NGYRLGDRVLQVSF 372
Score = 89 (36.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 278 NG 279
NG
Sbjct: 194 NG 195
Score = 66 (28.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 325 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 148 (57.2 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 132 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 191
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 192 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 237
Score = 126 (49.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 48 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 107
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 108 NGLRLQTKTIKVSY 121
Score = 122 (48.0 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 359 NGYRLGDRVLQVSF 372
Score = 89 (36.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 278 NG 279
NG
Sbjct: 194 NG 195
Score = 66 (28.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 325 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 148 (57.2 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 148 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 207
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 208 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 253
Score = 126 (49.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 64 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 123
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 124 NGLRLQTKTIKVSY 137
Score = 122 (48.0 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 361 NGYRLGDRVLQVSF 374
Score = 89 (36.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 278 NG 279
NG
Sbjct: 210 NG 211
Score = 66 (28.3 bits), Expect = 4.4e-12, Sum P(2) = 4.4e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 327 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 362
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 170 (64.9 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 45/151 (29%), Positives = 76/151 (50%)
Query: 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188
L + F+ G V I+ DR + RS+G +V ++ AI L G ++ G + V
Sbjct: 183 LEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGL-TGQRLLGVPIIVQA 241
Query: 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI 248
+ + AAM LQ G P ++Y G+L + +T LR F+ + + ++
Sbjct: 242 SQAEKN-RLAAMANNLQKGSSG----PMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLM 296
Query: 249 FERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ TGRS+G+GF+TF +E + AL+ +NG
Sbjct: 297 KDSDTGRSKGYGFITFSDSECARRALEQLNG 327
Score = 130 (50.8 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVG+L +++T L +F G + + ++ D T RS+G+GF+T E A+ A+
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 324
Query: 174 FDGSQIGGRTVKV 186
+G ++ GR ++V
Sbjct: 325 LNGFELAGRPMRV 337
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 148 (57.2 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 136 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 195
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 196 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 241
Score = 126 (49.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 52 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 111
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 112 NGLRLQTKTIKVSY 125
Score = 122 (48.0 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 363 NGYRLGDRVLQVSF 376
Score = 89 (36.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 278 NG 279
NG
Sbjct: 198 NG 199
Score = 66 (28.3 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 329 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 364
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 148 (57.2 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 197 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 242
Score = 126 (49.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 113 NGLRLQTKTIKVSY 126
Score = 122 (48.0 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 364 NGYRLGDRVLQVSF 377
Score = 89 (36.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 278 NG 279
NG
Sbjct: 199 NG 200
Score = 66 (28.3 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 330 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 148 (57.2 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 197 GLNGQKPSGATEPITVKFANNPSQKSSQAL---LSQLYQ----SPNRRYPGPL 242
Score = 126 (49.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 113 NGLRLQTKTIKVSY 126
Score = 122 (48.0 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 364 NGYRLGDRVLQVSF 377
Score = 89 (36.4 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 278 NG 279
NG
Sbjct: 199 NG 200
Score = 66 (28.3 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 330 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365
>UNIPROTKB|F1P5I0 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
Length = 288
Score = 165 (63.1 bits), Expect = 4.6e-12, P = 4.6e-12
Identities = 48/152 (31%), Positives = 76/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL E F + GT+ ++ D T RSRGFGFVT VEE A+
Sbjct: 10 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 69
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA + + G + KI+ G + LR
Sbjct: 70 RP-HKVDGRVVE------PK---RAVS--REDSVKPGAHLTVKKIFVGGIKEDTEEYNLR 117
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
+ F+ + + +V+ +R +G+ RGF FVTF+
Sbjct: 118 EYFEKYGKIETIEVMEDRQSGKKRGFAFVTFD 149
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 169 (64.5 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 46/164 (28%), Positives = 75/164 (45%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ GR + P PRG + PK Q + +KI+ G +
Sbjct: 70 SRPHTLDGRNIDPK-PCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETE 128
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
LR+ F+ + +I++ R RGFGF+TFE + + A++
Sbjct: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Score = 122 (48.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
I G+ V+V E PR + A G
Sbjct: 174 HF-HDIMGKKVEVKRAE-PRDSKNQAPG 199
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 169 (64.5 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 46/164 (28%), Positives = 75/164 (45%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L +S T +L F++ G V I+ D+ T++SRGFGFV +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD-PNCVGTVLA 69
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ GR + P PRG + PK Q + +KI+ G +
Sbjct: 70 SRPHTLDGRNIDPK-PCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETE 128
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275
LR+ F+ + +I++ R RGFGF+TFE + + A++
Sbjct: 129 LREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Score = 122 (48.0 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VG +P++ + L E F + G V ++YD R RGFGF+T + +A+ +
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 173
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
I G+ V+V E PR + A G
Sbjct: 174 HF-HDIMGKKVEVKRAE-PRDSKNQAPG 199
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 166 (63.5 bits), Expect = 4.9e-12, P = 4.9e-12
Identities = 46/152 (30%), Positives = 76/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL + + G + ++ D + RSRGFGFVT S+ E A+
Sbjct: 21 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 80
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
S I GR V+ P+ RA + ++ G + K++ G + LR
Sbjct: 81 RPHS-IDGRVVE------PK---RAVA--REESGKPGAHVTVKKLFVGGIKEDTEEHHLR 128
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
D F+ + + ++I +R +G+ RGFGFVTF+
Sbjct: 129 DYFEEYGKIDTIEIITDRQSGKKRGFGFVTFD 160
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + +L +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + +L +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 28/74 (37%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + +L +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
+G + GR ++V+ + + E + G
Sbjct: 67 MNGKSVDGRQIRVD--QAGKSSENRSRG 92
Score = 122 (48.0 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
+G + GR ++V+ + + E + G
Sbjct: 67 MNGKSVDGRQIRVD--QAGKSSENRSRG 92
Score = 122 (48.0 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMG 201
+G + GR ++V+ + + E + G
Sbjct: 67 MNGKSVDGRQIRVD--QAGKSSENRSRG 92
Score = 122 (48.0 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K+ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 145 (56.1 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 185 GLNGQKPPGATEPITVKFANNPSQKTNQAI---LSQLYQ----SPNRRYPGPL 230
Score = 130 (50.8 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 124 (48.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 325 NGYRLGDRVLQVSF 338
Score = 89 (36.4 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NG 279
NG
Sbjct: 187 NG 188
Score = 66 (28.3 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 291 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 326
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 165 (63.1 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 29/74 (39%), Positives = 49/74 (66%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L+VG L + SL +VF++ G ++ +V DR T RSRGFGFVT ++++AK+A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 174 FDGSQIGGRTVKVN 187
+G + GR ++V+
Sbjct: 67 MNGKSVDGRQIRVD 80
Score = 126 (49.4 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 26/63 (41%), Positives = 35/63 (55%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + Q L F + V+ +R T RSRGFGFVTFE +D + A+ A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 277 MNG 279
MNG
Sbjct: 67 MNG 69
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 166 (63.5 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 50/153 (32%), Positives = 76/153 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL F + GT+ ++ D T RSRGFGFVT +VEE A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNT 74
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA Q G + KI+ G + LR
Sbjct: 75 TP-HKVDGRVVE------PK---RAVSREDSQRP--GAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 234 DAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFE 265
D F+ Q G + +++ +R +G+ RGF FVTF+
Sbjct: 123 DYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFD 154
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 147 (56.8 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 137 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 197 GLNGQKPSGATEPITVKFANNPSQKTSQAL---LSQLYQ----SPNRRYPGPL 242
Score = 126 (49.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 53 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 112
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 113 NGLRLQTKTIKVSY 126
Score = 122 (48.0 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 350 NGYRLGDRVLQVSF 363
Score = 89 (36.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 278 NG 279
NG
Sbjct: 199 NG 200
Score = 66 (28.3 bits), Expect = 5.4e-12, Sum P(2) = 5.4e-12
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 316 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 351
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 165 (63.1 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 50/153 (32%), Positives = 76/153 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL F + GT+ ++ D T RSRGFGFVT +VEE A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA Q G + KI+ G + LR
Sbjct: 75 RP-HKVDGRVVE------PK---RAVSREDSQRP--GAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 234 DAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFE 265
D F+ Q G + +++ +R +G+ RGF FVTF+
Sbjct: 123 DYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFD 154
Score = 109 (43.4 bits), Expect = 0.00072, P = 0.00072
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T + LR F+ L V+ + T RSRGFGFVT+ T E++ +A++A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
>UNIPROTKB|F1N4K3 [details] [associations]
symbol:F1N4K3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:DAAA02019527
IPI:IPI00906169 Ensembl:ENSBTAT00000002951 OMA:HAINGHH
Uniprot:F1N4K3
Length = 329
Score = 166 (63.5 bits), Expect = 5.8e-12, P = 5.8e-12
Identities = 47/152 (30%), Positives = 77/152 (50%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL + + + G + ++ D + RSRG GFVT SV E A+
Sbjct: 10 KLFIGGLSFQTTEESLRKYYQQWGELTDCVVLRDFASQRSRGCGFVTFSSVTEVDAAMAA 69
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
S I GR ++ PR RA P+ + +G + K++ G + LR
Sbjct: 70 RPHS-IDGRVLE------PR---RAI--PREASGQRGAHWTLKKLFVGGIKEDTEEHHLR 117
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265
+ F+ + + ++I +R +GR RGFGFVTF+
Sbjct: 118 EYFEKYGKIDAIEIITDRQSGRKRGFGFVTFD 149
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 165 (63.1 bits), Expect = 5.9e-12, P = 5.9e-12
Identities = 50/153 (32%), Positives = 76/153 (49%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+L++G L + T SL F + GT+ ++ D T RSRGFGFVT +VEE A+
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
++ GR V+ P+ RA Q G + KI+ G + LR
Sbjct: 75 RP-HKVDGRVVE------PK---RAVSREDSQRP--GAHLTVKKIFVGGIKEDTEEHHLR 122
Query: 234 DAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFE 265
D F+ Q G + +++ +R +G+ RGF FVTF+
Sbjct: 123 DYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFD 154
Score = 109 (43.4 bits), Expect = 0.00073, P = 0.00073
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
K++ G L + T + LR F+ L V+ + T RSRGFGFVT+ T E++ +A++A
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 74
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 145 (56.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 40/113 (35%), Positives = 59/113 (52%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYV LP +MT L ++F++ G + ++ I+ D+VT SRG GF+ EA+EAI+
Sbjct: 125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184
Query: 173 LFDGSQIGGRT--VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNL 223
+G + G T + V F P A+ L YQ SP++ Y G L
Sbjct: 185 GLNGQKPPGATEPITVKFANNPSQKTNQAI---LSQLYQ----SPNRRYPGPL 230
Score = 130 (50.8 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L V LP +MT L +F G + S ++V D++T +S G+GFV ++A++AI
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 175 DGSQIGGRTVKVNF 188
+G ++ +T+KV++
Sbjct: 101 NGLRLQTKTIKVSY 114
Score = 124 (48.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++V NL S L ++F G V + +++ D T++ +GFGFVTM + +EA AI
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 175 DGSQIGGRTVKVNF 188
+G ++G R ++V+F
Sbjct: 338 NGYRLGDRVLQVSF 351
Score = 89 (36.4 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+Y L +T + L F +++++++ ++ TG SRG GF+ F+ + + A+ +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 278 NG 279
NG
Sbjct: 187 NG 188
Score = 66 (28.3 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ KVI + T + +GFGFVT ++ A+ ++NG
Sbjct: 304 NVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339
WARNING: HSPs involving 958 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 280 222 0.00096 112 3 11 22 0.40 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1208
No. of states in DFA: 586 (62 KB)
Total size of DFA: 145 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.98u 0.12s 17.10t Elapsed: 00:00:01
Total cpu time: 17.02u 0.12s 17.14t Elapsed: 00:00:01
Start: Fri May 10 09:39:08 2013 End: Fri May 10 09:39:09 2013
WARNINGS ISSUED: 2