BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023583
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 283 bits (724), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 130/167 (77%), Positives = 147/167 (88%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
RLYVGNLP+SMTSS L+E+FAEAGTVA+ EIVYDRVTDRSRGF FVTMGSVEEAKEAIRL
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233
FDGSQ+GGRTVKVNFPEVPRGGER M K++++YQGFVDSPHK+Y NL W LTSQGLR
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLR 234
Query: 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
DAF QPG +SAKVI++R +GRSRGFGF+TF +AE + SALD MN V
Sbjct: 235 DAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEV 281
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D +LYV NL +++TS L + FA+ SA+++YDR + RSRGFGF+T S E
Sbjct: 214 DSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNS 273
Query: 170 AIRLFDGSQIGGRTVKVN 187
A+ + ++ GR +++N
Sbjct: 274 ALDTMNEVELEGRPLRLN 291
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 156 bits (394), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/206 (40%), Positives = 130/206 (63%), Gaps = 20/206 (9%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
++ E+ VE E+P+ + E +L+VGNLP+S+ S++LA +F AG V E++YD++T
Sbjct: 69 DQLEDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTG 125
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP-----------RGGERAAM 200
RSRGFGFVTM + EE + A + F+G +I GR ++VN P RGG +
Sbjct: 126 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYG 185
Query: 201 GPKLQNSYQG------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG 254
G + NS G VDS +++Y GNL WG+ L++ F Q ++ AKV+++R +G
Sbjct: 186 GGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSG 245
Query: 255 RSRGFGFVTFETAEDLQSALDAMNGV 280
RSRGFGFVT+ +++++ A+D++NGV
Sbjct: 246 RSRGFGFVTYSSSKEVNDAIDSLNGV 271
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + R+YVGNL + + +L E+F+E G V A++VYDR + RSRGFGFVT S +E +
Sbjct: 204 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVND 263
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI +G + GR+++V+ E
Sbjct: 264 AIDSLNGVDLDGRSIRVSAAE 284
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/206 (39%), Positives = 130/206 (63%), Gaps = 20/206 (9%)
Query: 92 EEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
++ E+ VE E+P+ + E +L+VGNLP+S+ S++LA +F AG V E++YD+++
Sbjct: 70 DQLEDDVEVAEQPRFS---EDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSG 126
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP-----------RGGERAAM 200
RSRGFGFVTM + EE + A + F+G +I GR ++VN P RGG +
Sbjct: 127 RSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYG 186
Query: 201 GPKLQNSYQG------FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG 254
G + NS G VDS +++Y GNL WG+ L++ F Q ++ AKV+++R +G
Sbjct: 187 GGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSG 246
Query: 255 RSRGFGFVTFETAEDLQSALDAMNGV 280
RSRGFGFVT+ +A+++ A+D++NG+
Sbjct: 247 RSRGFGFVTYSSAKEVNDAIDSLNGI 272
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 54/81 (66%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
D + R+YVGNL + + +L E+F+E G V A++VYDR + RSRGFGFVT S +E +
Sbjct: 205 DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVND 264
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI +G + GR+++V+ E
Sbjct: 265 AIDSLNGIDLDGRSIRVSAAE 285
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 124/194 (63%), Gaps = 11/194 (5%)
Query: 89 QEEEEEEEAVEEEEE--PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
++ E+ ++ VEEE P + +++VGNLP+S S++LAE+F AG V E++Y
Sbjct: 68 EDVEDGDDGVEEERNFSPDL-------KIFVGNLPFSADSAALAELFERAGNVEMVEVIY 120
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQN 206
D++T RSRGFGFVTM S EE + A + F+G ++ GR ++VN P +R + +
Sbjct: 121 DKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPE--KRENSSFRGGS 178
Query: 207 SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266
G DS +++Y GNL WG+ L F Q ++ AKV+++R +GRSRGFGFVT+ +
Sbjct: 179 RGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSS 238
Query: 267 AEDLQSALDAMNGV 280
AE++ +A+++++GV
Sbjct: 239 AEEVNNAIESLDGV 252
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 48/74 (64%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A++VYDR + RSRGFGFVT S EE AI
Sbjct: 189 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 248
Query: 174 FDGSQIGGRTVKVN 187
DG + GR ++V+
Sbjct: 249 LDGVDLNGRAIRVS 262
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 141 bits (355), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/168 (42%), Positives = 107/168 (63%), Gaps = 11/168 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A+L+VGNLPY + S LA +F +AG V AE++Y+R TD+SRGFGFVTM +VEEA++A+
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPK-LQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+++ + GR + VN + R GER P+ + SY +IY GN+ WG+
Sbjct: 196 MYNRYDVNGRLLTVN--KAARRGERPERPPRTFEQSY--------RIYVGNIPWGIDDAR 245
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++SA+V+++R TGRSRGFGFVT + ++ A+ ++G
Sbjct: 246 LEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDG 293
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 56/81 (69%)
Query: 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKE 169
+++ R+YVGN+P+ + + L ++F+E G V SA +VYDR T RSRGFGFVTM S E +
Sbjct: 227 EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSD 286
Query: 170 AIRLFDGSQIGGRTVKVNFPE 190
AI DG + GRT++VN E
Sbjct: 287 AIANLDGQSLDGRTIRVNVAE 307
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 141 bits (355), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 16/182 (8%)
Query: 99 EEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGF 158
EE +EP E A+L+VGNLPY + S LA++F +AG V AE++Y+R TDRSRGFGF
Sbjct: 88 EEYQEPS-----EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGF 142
Query: 159 VTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPK-LQNSYQGFVDSPHK 217
VTM +VEEA +A+ L+ + GR + VN PRG R P+ Q +Y +
Sbjct: 143 VTMSTVEEADKAVELYSQYDLNGRLLTVN-KAAPRGS-RPERAPRTFQPTY--------R 192
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
IY GN+ W + L F ++SA+V+F+R +GRSRGFGFVT + ++ A+ +
Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252
Query: 278 NG 279
+G
Sbjct: 253 DG 254
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGN+P+ + + L +VF+E G V SA +V+DR + RSRGFGFVTM S E EAI
Sbjct: 192 RIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIAN 251
Query: 174 FDGSQIGGRTVKVN 187
DG + GRT++VN
Sbjct: 252 LDGQTLDGRTIRVN 265
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 122/200 (61%), Gaps = 10/200 (5%)
Query: 90 EEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV 149
E E EE+ + PK + +L+VGNLP+++ S+ LA++F AG V E++YD++
Sbjct: 68 EFEVEEDGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 127
Query: 150 TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF-PEVPRGGERAAMGPK----- 203
T RSRGFGFVTM SV E + A + F+G ++ GR ++VN P P+ + + GP+
Sbjct: 128 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGS 187
Query: 204 ----LQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF 259
S +++Y GNL WG+ L F Q ++ A+VI++R +GRS+GF
Sbjct: 188 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 247
Query: 260 GFVTFETAEDLQSALDAMNG 279
GFVT+++++++Q+A+ +++G
Sbjct: 248 GFVTYDSSQEVQNAIKSLDG 267
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 50/74 (67%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
R+YVGNL + + +L +F+E G V A ++YDR + RS+GFGFVT S +E + AI+
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 174 FDGSQIGGRTVKVN 187
DG+ + GR ++V+
Sbjct: 265 LDGADLDGRQIRVS 278
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 11/170 (6%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNLPY + S LA +F AG V AE++Y+R TDRSRGFGFVTM +VEEA++A
Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGG-ERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
+ L +G + GR + VN PRG ERA +G + ++Y GNL W + +
Sbjct: 113 VELLNGYDMDGRQLTVN-KAAPRGSPERAP---------RGDFEPSCRVYVGNLPWDVDT 162
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++SA+V+ +R TGRSRGFGFVT + ++ A+ A++G
Sbjct: 163 SRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDG 212
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/79 (51%), Positives = 53/79 (67%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ R+YVGNLP+ + +S L ++F+E G V SA +V DR T RSRGFGFVTM S E +AI
Sbjct: 148 SCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAI 207
Query: 172 RLFDGSQIGGRTVKVNFPE 190
DG + GR V+VN E
Sbjct: 208 AALDGQTLDGRAVRVNVAE 226
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 111/171 (64%), Gaps = 4/171 (2%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
+++VGNL +S S++LAE+F AG V E++YD++T RSRGFGFVTM S EE + A +
Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147
Query: 174 FDGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229
F+G ++ GR ++VN P E R + + G DS +++Y GNL WG+
Sbjct: 148 FNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQ 207
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L F Q ++ AKV+++R +GRSRGFGFVT+ +AE++ +A+++++GV
Sbjct: 208 DALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGV 258
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 60/115 (52%)
Query: 72 FDGFQVTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAE 131
DG + +S PE + E + + D + R+YVGNL + + +L
Sbjct: 153 LDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALET 212
Query: 132 VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
+F+E G V A++VYDR + RSRGFGFVT S EE AI DG + GR ++V
Sbjct: 213 LFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRV 267
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 105/169 (62%), Gaps = 9/169 (5%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E A+L+VGNL Y + S +LA +F +AGTV AE++Y+R TD+SRGFGFVTM SV+EA+ A
Sbjct: 148 EEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETA 207
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ F+ + GR + VN PRG R P++ + ++Y GNL W + +
Sbjct: 208 VEKFNRYDLNGRLLTVN-KAAPRGS-RPERAPRV-------YEPAFRVYVGNLPWDVDNG 258
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
L F ++ A+V+++R TGRSRGFGFVT ++L A+ A++G
Sbjct: 259 RLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDG 307
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A R+YVGNLP+ + + L ++F+E G V A +VYDR T RSRGFGFVTM V+E EAI
Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI 302
Query: 172 RLFDGSQIGGRTVKVNFPE--VPRGG 195
DG + GR ++VN E PR G
Sbjct: 303 SALDGQNLEGRAIRVNVAEERPPRRG 328
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 131 bits (330), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 103/167 (61%), Gaps = 3/167 (1%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A RLYVGN+P ++ + L + E G + AE++YD+ + RSR FGFVTM +VE+A I
Sbjct: 83 ARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVI 142
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ ++IGGR +KVN E P G A Q FV+SP+K+Y GNL +T++
Sbjct: 143 EKLNDTEIGGRKIKVNITEKPLEGMDIAT---TQAEDSQFVESPYKVYIGNLAKTVTNEL 199
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L+D F + +L AKV T +S GFGFV+F + E++++A+ A+N
Sbjct: 200 LKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALN 246
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++Y+GNL ++T+ L + F+E G V A++ T +S GFGFV+ S EE + AI+
Sbjct: 185 KVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQA 244
Query: 174 FDGSQIGGRTVKVN 187
+ S + G+ ++VN
Sbjct: 245 LNNSVLEGQKIRVN 258
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 29/209 (13%)
Query: 84 EPETEQE-----EEEEEEAVEEEEEPKVAASDEAA--------RLYVGNLPYSMTSSSLA 130
+P +EQ E+ E + E +P V ++ LYVGNL ++T L
Sbjct: 33 DPSSEQSVAVEGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILK 92
Query: 131 EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190
+ F G +A+ +I+ D+ +++ + FV +A A++ +G QI VK+N+
Sbjct: 93 QYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW-- 149
Query: 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE 250
Q S Q D ++ G+L + + LR+AF+ P LS V+++
Sbjct: 150 ------------AFQ-SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWD 196
Query: 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279
TG SRG+GFV+F + +D Q+A+D+M G
Sbjct: 197 MQTGSSRGYGFVSFTSQDDAQNAMDSMQG 225
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++SD+ L+VG+L ++ +L F + + S +++D T SRG+GFV+ S ++
Sbjct: 156 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDD 215
Query: 167 AKEAIRLFDGSQIGGRTVKVNF 188
A+ A+ G + GR +++N+
Sbjct: 216 AQNAMDSMQGQDLNGRPLRINW 237
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +Y+ N M L E+F+ G S +++ D T RSRGFGFV G+ EEA++A
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLG 224
+ +G ++ GR + V + + R GE +++ N YQG +Y NL
Sbjct: 248 VSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 303 DGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV+ + + SRG+GFV FET E A+ MNG+
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGM 161
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E Y V +Y N G + + LR+
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREL---------EYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + TGRSRGFGFV + E+ Q A+ MNG
Sbjct: 210 IFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVSTKPLYVALAQ--RKEERKAI---LTNQY 382
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 14/175 (8%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A
Sbjct: 189 EFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQ----NSYQGFVDSPHKIYAGNLG 224
+ +G ++ GR V V + + R GE +++ N YQG +Y NL
Sbjct: 248 VTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGV-----NLYVKNLD 302
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
G+ LR F + S KV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 303 DGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 17/168 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS G+ ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDDSIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV+ + Y SRG+GFV FET E A+ MNG+
Sbjct: 116 YDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGM 161
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E Y V +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREL---------EYGAKVMEFTNVYIKNFGEDMDDKRLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +GRSRGFGFV + E+ Q A+ MNG
Sbjct: 210 IFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNG 253
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ S +++ + S+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE--GGHSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A+ L N Y
Sbjct: 350 VTEMNGRIVSTKPLYVALAQ--RKEERKAI---LTNQY 382
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 89/173 (51%), Gaps = 16/173 (9%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V S E+
Sbjct: 43 AHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDG 102
Query: 168 KEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
++A+ + + I G+ ++ + + P L+ + QG ++ NL +
Sbjct: 103 EKALEELNYTVIKGKPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDHAI 147
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
++ L D F +LS KV + G S+G+GFV +ETAE +A+ +NG+
Sbjct: 148 DNKALHDTFAAFGNILSCKVAQDEL-GNSKGYGFVHYETAEAANNAIKHVNGM 199
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL +++ + +L + FA G + S ++ D + + S+G+GFV + E A AI+
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHV 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ER + K + F + IY N+ +T + R+
Sbjct: 197 NGMLLNEKKVFVGH-HIPKK-ERMS---KFEEMKANFTN----IYVKNIDLDVTDEDFRE 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F+ + SA + + G+SRGFGFV + E A+D +N +
Sbjct: 248 LFEKHGDITSASIARDD-QGKSRGFGFVNYIRHEAAAVAVDHLNDI 292
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 68/224 (30%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+F + G + SA I D +SRGFGFV E A A+
Sbjct: 231 IYVKNIDLDVTDEDFRELFEKHGDITSASIARDD-QGKSRGFGFVNYIRHEAAAVAVDHL 289
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ + E A + + Q+ YQG +Y NL
Sbjct: 290 NDIEFKGQKLYVGRAQKKHEREEELRKQYEAARL--EKQSKYQGV-----NLYIKNLNDD 342
Query: 227 LTSQGLRDAFQGQPGLLSAKVIF------------------------------------- 249
+ + LRD F + SAKVI
Sbjct: 343 VDDEKLRDMFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQN 402
Query: 250 ---------------ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ G+S+GFGFV F ++ A+ MN
Sbjct: 403 GEDTKAGDKVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMN 446
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 12/175 (6%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
++E A ++VG L +S+ L + F G V A ++Y+R TDRSRG+G+V + A+
Sbjct: 164 TEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAE 223
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK----IYAGNLG 224
+AI+ G +I GR + + G + + F D+P + ++ GNL
Sbjct: 224 KAIQEMQGKEIDGRPINCDMSTSKPAGN--------NDRAKKFGDTPSEPSDTLFLGNLS 275
Query: 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+ + + F ++S ++ T + +GFG+V F ED + ALDA+ G
Sbjct: 276 FNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQG 330
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L++GNL ++ ++ E+FA+ G V S I T++ +GFG+V ++E+AK+A+
Sbjct: 269 LFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDAL 328
Query: 175 DGSQIGGRTVKVNF 188
G I R V+++F
Sbjct: 329 QGEYIDNRPVRLDF 342
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 21/204 (10%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+TE + ++ E ++++E EE + V+AS LYVG+L S++ + L ++F+
Sbjct: 4 ITEKTAEQLENLSLQDKQEGTNEENQSETVSAS-----LYVGDLDPSVSEAHLYDIFSPI 58
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G V+S + D +T S G+ +V + AK AI + + I G+ ++ +
Sbjct: 59 GAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEKLNFTPIKGKLCRIMW-------- 110
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G I+ NL + ++ L D F +LS+KV + TG+S
Sbjct: 111 -SQRDPSLRKKGAG------NIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKS 162
Query: 257 RGFGFVTFETAEDLQSALDAMNGV 280
+GFG+V FE E A+DA+NG+
Sbjct: 163 KGFGYVHFEEDESASEAIDALNGM 186
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 15/171 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD-RSRGFGFVTMGSVEEAKEAIRL 173
+Y+ N+ T E+ A+ G S +V +R + ++GFGFV + E+A + +
Sbjct: 218 VYIKNINTETTDKEFEELVAKFGKTDS--VVLERTPEGENKGFGFVNFVNHEDAVKCVEE 275
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGL 227
+ ++ G+ + VN R ++ +L+ Y+ Y G NL +
Sbjct: 276 LNNTEFKGQPLYVN-----RAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSI 330
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L + F + SAKV+ G+S+GFGFV F T E+ A+ N
Sbjct: 331 DDKKLEEEFAPYGTITSAKVMTTE-NGKSKGFGFVCFSTPEEATKAITEKN 380
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 25/176 (14%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL + + +L + F+ G + S+++ D T +S+GFG+V E A EAI
Sbjct: 122 AGNIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAI 180
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + + ER + K + F + +Y N+ T +
Sbjct: 181 DALNGMLLNGQEIYVG-PHLSK-KERES---KFEEMKANFTN----VYIKNINTETTDKE 231
Query: 232 LRDAFQGQPGLLSAK------VIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGV 280
+ L AK V+ ER G ++GFGFV F ED ++ +N
Sbjct: 232 FEE--------LVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNT 279
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E +QE +++ EA E+ A + L++ NL S+ L E FA GT+
Sbjct: 291 AQKKYERQQELKKQYEATRMEK----MAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTIT 346
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
SA+++ +S+GFGFV + EEA +AI + + G+ + V
Sbjct: 347 SAKVMTTE-NGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 391
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 84.3 bits (207), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 86/180 (47%), Gaps = 24/180 (13%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
E +Y+ N M L E+F+ G S +++ D + RSRGFGFV G+ EEA++A
Sbjct: 189 EFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKA 247
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQ-----------NSYQGFVDSPHKIY 219
+ +G ++ GR + V R +R +L+ N YQG +Y
Sbjct: 248 VSEMNGKEVNGRMIYVG-----RAQKRIERQSELKRKFEQIKQERINRYQGV-----NLY 297
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL G+ LR F + SAKV+ E G S+GFGFV F + E+ A+ MNG
Sbjct: 298 VKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LY+G+L +T + L E F+ AG + S + D T RS + ++ +A+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ I GR +++ + + G ++ +G ++ NL + ++ L
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVG---------------NVFIKNLDESIDNKAL 115
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
D F +LS KV+ + + SRG+GFV FET E A+ MNG+
Sbjct: 116 YDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGM 161
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D SRG+GFV + E A AI+
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V + R E Y V +Y N G + + LR+
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREL---------EYGAKVMEFTNVYIKNFGEDMDDKRLRE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +GRSRGFGFV + E+ Q A+ MNG
Sbjct: 210 IFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q E + E + + E +++E + + LYV NL + L + F GT+
Sbjct: 266 AQKRIERQSELKRKFEQIKQERINRY----QGVNLYVKNLDDGIDDDRLRKEFLPYGTIT 321
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAM 200
SA+++ + S+GFGFV S EEA +A+ +G + + + V + R ER A+
Sbjct: 322 SAKVMTE--GGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ--RKEERKAI 377
Query: 201 GPKLQNSY 208
L N Y
Sbjct: 378 ---LTNQY 382
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 93/180 (51%), Gaps = 18/180 (10%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
++E K E+ L V NL Y+ + +L E+F +A ++ + R +G+ FV
Sbjct: 448 QQESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQ----NNQGRPKGYAFV 503
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNF--PEVPRGGERAAMGPKLQNSYQGFVDSPHK 217
+ E+AKEA+ + ++I GR +++ F P +G N+ GF
Sbjct: 504 EFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGN---------MNARGGFNQQSKT 554
Query: 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
++ L T + LR++F+G +SA+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 555 LFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A L+V NLPY +T + VF A V +V ++ S+G ++ + EA++A
Sbjct: 369 DARTLFVKNLPYRVTEDEMKNVFENALEV---RLVLNK-EGSSKGMAYIEFKTEAEAEKA 424
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHK-IYAGNLGWGLTS 229
+ G+++ GR + +++ GE++ Q S +G + K + NL + +
Sbjct: 425 LEEKQGTEVDGRAMVIDY-----TGEKSQ-----QESQKGGGERESKTLIVNNLSYAASE 474
Query: 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ L++ F+ + + + GR +G+ FV F TAED + AL++ N
Sbjct: 475 ETLQELFKKATSIK----MPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNT 521
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
L+V L T +L E F G++ SA IV DR T S+GFGFV S E+AK A
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSI-SARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAM 611
Query: 175 DGSQIGGRTVKVNFPEVPRG 194
+ +I G V ++F + P+G
Sbjct: 612 EDGEIDGNKVTLDFAK-PKG 630
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 88/170 (51%), Gaps = 16/170 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 53 HSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 112
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 113 LEDLNYTLIKGRPCRIMWSQ---------RDPALRKTGQG------NVFIKNLDTAIDNK 157
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + + G S+G+GFV +ETAE Q+A+ +NG+
Sbjct: 158 ALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAAQNAIKHVNGM 206
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A+ AI+
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHV 203
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G A + Q+ ++ + +Y N+ T + RD
Sbjct: 204 NGMLLNDKKVFV--------GHHIAKKDR-QSKFEEMKANFTNVYVKNIDQDTTEEEFRD 254
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + SA + + +G+SRGFGFV F + ++ +A++A+N
Sbjct: 255 LFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALN 298
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ T ++F + G + SA + D + +SRGFGFV S + A A+
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEAL 297
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+ G+ + V R ++ +L+ Y+ ++ K +Y NL +
Sbjct: 298 NDKDFKGQKLYVG-----RAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDID 352
Query: 229 SQGLRDAFQGQPGLLSAKVI 248
+ LR+ F + SAKV+
Sbjct: 353 DEKLRELFSSYGTITSAKVM 372
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LY+ NL + L E+F+ GT+ SA+++
Sbjct: 313 QKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVM 372
Query: 146 YD 147
D
Sbjct: 373 RD 374
>sp|Q99383|HRP1_YEAST Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1
SV=1
Length = 534
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
+EE K S E+ ++++G L + T +L E F + GTV +I+ D T RSRGFGF+
Sbjct: 146 KEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFL 205
Query: 160 TM---GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+ SV+E + + DG I + +PR + D
Sbjct: 206 SFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ----------------DKTG 243
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268
KI+ G +G + + + F ++ A+++ ++ TG+SRGFGFVT+++A+
Sbjct: 244 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD 295
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I GR V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGRPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ ++ L D F +LS KV+ + S+G+GFV FET E + A+D MNG+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGM 161
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGDDMNDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 MFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 88/179 (49%), Gaps = 14/179 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G + G+++ V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 92/187 (49%), Gaps = 16/187 (8%)
Query: 94 EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRS 153
E AVE A +A LYVG L S+T + L E+F+ G VAS + D VT RS
Sbjct: 35 EVTAVENSTPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRS 94
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVD 213
G+ +V + + + A+ + + I G+ ++ + + P L+ + QG
Sbjct: 95 LGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG--- 142
Query: 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A
Sbjct: 143 ---NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNA 198
Query: 274 LDAMNGV 280
+ +NG+
Sbjct: 199 IKHVNGM 205
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 202
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y NL + R
Sbjct: 203 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNLDSEIDDDEFRK 253
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A++ MN
Sbjct: 254 MFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMN 296
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL + ++F + G + SA + D+ +SRGFGFV + E A+ A+
Sbjct: 237 VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHESAQAAVEEM 295
Query: 175 DGSQIGGRTVKVNFPEVPRGGER--------AAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ +I R+ K+ + ER A + + YQG +Y NL
Sbjct: 296 NDKEI--RSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV-----NLYVKNLTDD 348
Query: 227 LTSQGLRDAFQGQPGLLSAKVI 248
+ + LR+ F + SAKV+
Sbjct: 349 IDDEKLRELFGPYGTITSAKVM 370
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LYV NL + L E+F GT+ SA+++
Sbjct: 311 QKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVM 370
Query: 146 YDRVTDRSR 154
D +R +
Sbjct: 371 RDTNVERDQ 379
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 100/204 (49%), Gaps = 18/204 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+T+ + ++ E + EE+ E E PKV S A LYVG L +++ + L ++F+
Sbjct: 4 ITDKTAEQLEQLKIEEQTAPTTTESETPKVETS--GASLYVGELEPTVSEALLYDIFSPI 61
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T+ S G+ +V E +AI + + I G+ ++ +
Sbjct: 62 GSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMW-------- 113
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G IY NL + ++ L + F +LS KV + G S
Sbjct: 114 -SQRDPSLRKKGSG------NIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVS 165
Query: 257 RGFGFVTFETAEDLQSALDAMNGV 280
RGFGFV FE D + A++A++G+
Sbjct: 166 RGFGFVHFENESDARDAIEAVDGM 189
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +Y+ NL ++ + SL E F+ G + S ++ D SRGFGFV + +A++AI
Sbjct: 125 SGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
DG + + V V V + ++ KL+ F + +Y N+ + +
Sbjct: 184 EAVDGMLMNDQEVYVAL-HVSKKDRQS----KLEEVKAKFTN----VYVKNIDQETSQEE 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ F G+ G +++ V+ + G+ RGFGFV FE A+D +N
Sbjct: 235 FEELF-GKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + E+F + G + SA + D + RGFGFV A +A+
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDS-EGKLRGFGFVNFEDHAAAAKAVDEL 279
Query: 175 DGSQIGGRTVKV--------NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ + G+ + V E+ + E A + KL YQG ++ NL
Sbjct: 280 NELEFKGQKLYVGRAQKKYERLQELKKQYEAARL-EKLA-KYQGV-----NLFVKNLDDS 332
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ + L++ F + SAKV+ + TG SRGFGFV F T E+ A+ N
Sbjct: 333 IDDEKLKEEFAPFGTITSAKVMRDE-TGNSRGFGFVCFSTPEEATKAITEKN 383
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E QE +++ EA E+ A + L+V NL S+ L E FA GT+
Sbjct: 294 AQKKYERLQELKKQYEAARLEK----LAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTIT 349
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
SA+++ D T SRGFGFV + EEA +AI + + G+ + V
Sbjct: 350 SAKVMRDE-TGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 394
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 16/179 (8%)
Query: 102 EEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161
E P + +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V
Sbjct: 31 EAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 90
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG 221
+ A+ + + I G+ ++ + + P L+ + QG ++
Sbjct: 91 NDTAHGERALDELNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIK 135
Query: 222 NLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG+
Sbjct: 136 NLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVNGM 193
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A AI+
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHV 190
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + IY N+ + + R
Sbjct: 191 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----IYIKNIDPEVEDEEFRK 241
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A++ MN
Sbjct: 242 LFE-KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMN 284
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 16/142 (11%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ + ++F + G + SA + D +SRGFGFV + E A+ A+
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDS-EGKSRGFGFVNFSTHESAQAAVEEM 283
Query: 175 DGSQIGGRTVKVNFPEVPRGGER--------AAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ ++ R+ K+ + ER A + + YQG +Y NL
Sbjct: 284 NDKEV--RSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGV-----NLYVKNLTDD 336
Query: 227 LTSQGLRDAFQGQPGLLSAKVI 248
+ LR+ F + SAKV+
Sbjct: 337 VDDDKLRELFGPYGTITSAKVM 358
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E E+E ++ EA E+ A+ + LYV NL + L E+F GT+
Sbjct: 298 AQKKHEREEELRKQYEAARMEK----ASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTIT 353
Query: 141 SAEIVYD 147
SA+++ D
Sbjct: 354 SAKVMRD 360
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 17/184 (9%)
Query: 97 AVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF 156
AVE P A+ +A LYVG L S+T + L E+F+ G VAS + D VT RS G+
Sbjct: 34 AVESTTAPN-ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGY 92
Query: 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPH 216
+V + + + A+ + + I G+ ++ + + P L+ + QG
Sbjct: 93 AYVNYNNTADGERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------ 137
Query: 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276
++ NL + ++ L D F +LS KV + + G S+G+GFV +ETAE +A+
Sbjct: 138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKH 196
Query: 277 MNGV 280
+NG+
Sbjct: 197 VNGM 200
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 197
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y N+ +T + R+
Sbjct: 198 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNIDQDVTEEEFRE 248
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T E Q+A+D MN
Sbjct: 249 LFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMN 291
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LYV NL + L E+F GT+ SA+++
Sbjct: 306 QKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVM 365
Query: 146 YDRVTDRSR 154
D +R++
Sbjct: 366 RDTNIERTQ 374
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 100/202 (49%), Gaps = 16/202 (7%)
Query: 82 QDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS 141
Q P+ Q ++ ++ + + D+ L+VG+L + M + L F+ G V+S
Sbjct: 77 QHHPQLHQYGSYQQHQHQQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSS 136
Query: 142 AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI--GGRTVKVNFPEVPRGGERAA 199
+++ +++T +S G+GFV S A+E ++ + GS + + ++N+ G +RA
Sbjct: 137 VKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAV 196
Query: 200 -MGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSR 257
GP L ++ G+L +T L + F + P + SAKV+ + TGRS+
Sbjct: 197 ENGPDL------------SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSK 244
Query: 258 GFGFVTFETAEDLQSALDAMNG 279
G+GFV F + AL MNG
Sbjct: 245 GYGFVRFGDENERSRALTEMNG 266
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 32/187 (17%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F++ +V SA++V D T RS+G+GFV G E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG-- 231
+G+ R ++V R A+ + Q+S Q + + G++G+G S G
Sbjct: 264 MNGAYCSNRQMRVGIATPKR-----AIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGES 318
Query: 232 ------------------LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273
LR F ++S K+ +G GFV F + + A
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDA 372
Query: 274 LDAMNGV 280
++++NG
Sbjct: 373 IESLNGT 379
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A ++VG + + L + F++ G V S +I +G GFV + A++AI
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDAIE 374
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+G+ IG TV++++ P R G + Y
Sbjct: 375 SLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWNGGY 410
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 81.3 bits (199), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A+
Sbjct: 50 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 109
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 110 EDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDSAIDNKA 154
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG+
Sbjct: 155 LHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGM 202
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 199
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K F + IY N+ +T + R
Sbjct: 200 NGMLLNDKKVFVGH-HISKKDRQS----KFDEMKANFTN----IYIKNIDPDVTEEEFRK 250
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ Q G +++ + G+SRGFGFV + T E Q+A+D M+
Sbjct: 251 IFE-QFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDEMH 293
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 54/153 (35%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LYV NL + L E+F GT+ SA+++
Sbjct: 308 QKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVM 367
Query: 146 YD----------------------------------------------------RVTDRS 153
D ++ +S
Sbjct: 368 RDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKS 427
Query: 154 RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
+GFGFV S +EA +A+ + + G+ + V
Sbjct: 428 KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYV 460
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 89/174 (51%), Gaps = 16/174 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A+ +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + +
Sbjct: 46 ASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ A+ + + I G+ ++ + + P L+ + QG ++ NL
Sbjct: 106 GERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDAA 150
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ ++ L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG+
Sbjct: 151 IDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGM 203
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 200
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y N+ +T + R
Sbjct: 201 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNIDQEVTDEEFRK 251
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T + Q+A+D MN
Sbjct: 252 MFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Score = 41.2 bits (95), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 58/216 (26%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T ++F + G + SA + D+ +SRGFGFV + + A+ A+
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 175 DGSQIGGRTVKVNFPEVPRGGE----RAAMGPKLQNS--YQGFVDSPHKIYAGNLGWGLT 228
+ +I G+ + V + E + +L+ + YQG +Y NL +
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGV-----NLYVKNLTDDVD 348
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYT----------------------------------- 253
+ LR+ F + SAKV+ + T
Sbjct: 349 DEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESE 408
Query: 254 -----------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F + ++ A+ MN
Sbjct: 409 EEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMN 444
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 48/147 (32%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LYV NL + L E+F+ GT+ SA+++
Sbjct: 309 QKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVM 368
Query: 146 YDRVTD----------------------------------------------RSRGFGFV 159
D VT +S+GFGFV
Sbjct: 369 RDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFV 428
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKV 186
S +EA +A+ + + G+ + V
Sbjct: 429 CFSSPDEASKAVTEMNQRMVNGKPLYV 455
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 485 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDAK 540
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 541 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 587
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 588 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 633
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI RS+G ++ S +A++
Sbjct: 395 AARTLLAKNLSFNITEDELKEVFEDA-----VEIRLVSQDGRSKGIAYIEFKSEADAEKN 449
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + + NL + T +
Sbjct: 450 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSGESKT---LVLSNLSYSATEE 503
Query: 231 GLRDAFQGQPGLLSAKVIFERYT----GRSRGFGFVTFETAEDLQSALDAMN 278
L++ F+ K F + G+S+G+ F+ F + ED + AL++ N
Sbjct: 504 TLQEVFE--------KATFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCN 547
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 569 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 625
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 626 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 652
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 85/206 (41%), Gaps = 56/206 (27%)
Query: 104 PKVAASDEAAR--------------------------LYVGNLPYSMTSSSL----AEVF 133
P AA + + L++GNL + + + L +E+F
Sbjct: 276 PVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELF 335
Query: 134 AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193
A+ A D T +R FG+V S E+ ++A+ L G ++ G +K+ E P+
Sbjct: 336 AKNDLAA-----VDVRTGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPK 386
Query: 194 GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT 253
G ++S + V + + A NL + +T L++ F+ + ++
Sbjct: 387 G----------RDSKK--VRAARTLLAKNLSFNITEDELKEVFED-----AVEIRLVSQD 429
Query: 254 GRSRGFGFVTFETAEDLQSALDAMNG 279
GRS+G ++ F++ D + L+ G
Sbjct: 430 GRSKGIAYIEFKSEADAEKNLEEKQG 455
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 20/169 (11%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
S E+ L + NL YS T +L EVF +A + V +S+G+ F+ S E+AK
Sbjct: 482 SGESKTLVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAK 537
Query: 169 EAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228
EA+ + +I GRT+++ + PRG A P ++ L T
Sbjct: 538 EALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPS------------KTLFVKGLSEDTT 584
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L+++F+G + A+++ +R TG S+GFGFV F + ED ++A +AM
Sbjct: 585 EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 81/168 (48%), Gaps = 16/168 (9%)
Query: 112 AAR-LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
AAR L NL +++T L EVF +A EI +S+G ++ S +A++
Sbjct: 392 AARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKN 446
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ G++I GR+V + + G+R K +++ G + + NL + T +
Sbjct: 447 LEEKQGAEIDGRSVSLYY--TGEKGQRQERTGK-NSTWSGESKT---LVLSNLSYSATEE 500
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
L++ F+ + + + G+S+G+ F+ F + ED + AL++ N
Sbjct: 501 TLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDAKEALNSCN 544
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S + L+V L T +L E F G+V A IV DR T S+GFGFV S E+
Sbjct: 566 ARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEED 622
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRG 194
AK A + +I G V +++ + P+G
Sbjct: 623 AKAAKEAMEDGEIDGNKVTLDWAK-PKG 649
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 120 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 164
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + G S+G+GFV +ET E A+ +NG+
Sbjct: 165 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGM 212
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHV 209
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V +P+ ++ K F + IY N+ +T R
Sbjct: 210 NGMLLNEKKVYVGH-HIPKKDRQS----KFDEMKANFTN----IYVKNINPEVTDDEFRT 260
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + S+ + ++ TG+SRGFGFV F + ED A+ +N
Sbjct: 261 LFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T +F + G V S+ + D+ T +SRGFGFV S E+A +A++
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ + G+ + V R ++ +L+ SY+ Y G NL +
Sbjct: 304 NEKEFHGQNLYVG-----RAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVD 358
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYT 253
+ LR F + SAKV+ + T
Sbjct: 359 DEKLRQLFSEFGPITSAKVMRDSIT 383
Score = 34.3 bits (77), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E E+E + EA +E+ A+ + LY+ NL + L ++F+E G +
Sbjct: 318 AQKKHEREEELRKSYEAARQEK----ASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPIT 373
Query: 141 SAEIVYDRVTD 151
SA+++ D +T+
Sbjct: 374 SAKVMRDSITE 384
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 94 EEEAVEEEEEPKVAASDEA--ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD 151
E EA E E K + D+ A LYVG L S+T + L E+F G V S + D +T
Sbjct: 25 EGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITR 84
Query: 152 RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF 211
RS G+ +V + + A+ + S I R ++ + + P L+ + G
Sbjct: 85 RSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMW---------SQRDPALRKTGAG- 134
Query: 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
IY NL + ++ L D F +LS K+ + + G SRGFGFV +E+AE +
Sbjct: 135 -----NIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEF-GNSRGFGFVHYESAESAE 188
Query: 272 SALDAMNGV 280
SA+ +NG+
Sbjct: 189 SAIQHVNGM 197
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +Y+ NL ++ + +L + F+ G + S +I D + SRGFGFV S E A+ AI
Sbjct: 133 AGNIYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGN-SRGFGFVHYESAESAESAI 191
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS-- 229
+ +G + + V V P VP+ +R + +NS+ ++ NLG +T
Sbjct: 192 QHVNGMLLNDKKVFVG-PHVPK-SDRMQSFEEQKNSFT-------NVFIKNLGTEITEAE 242
Query: 230 -QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277
+ L + F G S+ + G+ GFGFV ++ + A+D +
Sbjct: 243 FEELVNKF----GETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGL 287
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LY+ NL ++ L FA GT+ SA+++ D +S+GFGFV S EEA +A
Sbjct: 328 QGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAG-KSKGFGFVCYSSPEEATKA 386
Query: 171 IRLFDGSQIGGRTVKV 186
+ + + G+ + V
Sbjct: 387 VTEMNHRLVAGKPLYV 402
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI--- 171
+++ NL +T + E+ + G +S + + + GFGFV + A +AI
Sbjct: 229 VFIKNLGTEITEAEFEELVNKFGETSSVHLSTND-EGKPTGFGFVDYKEHDVAVKAIDGL 287
Query: 172 --RLFDGSQIGGRTVKVNFPEVP--RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL 227
F G+++ K + R A+ KL N YQG +Y NL +
Sbjct: 288 SETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKL-NKYQGV-----NLYIKNLDDTI 341
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
LR F + SAKV+ + G+S+GFGFV + + E+ A+ MN
Sbjct: 342 DDDKLRAEFAPHGTITSAKVMVDE-AGKSKGFGFVCYSSPEEATKAVTEMN 391
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 16/181 (8%)
Query: 100 EEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFV 159
EE+ ++ +A LYVG L S+ ++L E+F+ G VAS + D V+ +S G+ +V
Sbjct: 54 EEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAVSKKSLGYAYV 113
Query: 160 TMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIY 219
+E+ ++AI + + + GR ++ + + R+ G I+
Sbjct: 114 NYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDG---------------NIF 158
Query: 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL + ++ L D F +LS KV + G+S+ FGFV +ET E Q+A++++NG
Sbjct: 159 IKNLHPAIDNKALHDTFSAFGKILSVKVATDD-LGQSKCFGFVHYETEEAAQAAIESVNG 217
Query: 280 V 280
+
Sbjct: 218 M 218
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ + T E+FA G + S + D +S+GFGFV E A +A+
Sbjct: 250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEGKSKGFGFVNFEEHEAAAKAVEEL 308
Query: 175 DGSQIGGRTVKVNFPEVPRGGERA--------AMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ +I G+ + V + R ER A+ + + YQG ++ NL
Sbjct: 309 NDKEINGQKIYVGRAQKKR--ERTEELKKQYEAVRLEKLSKYQGV-----NLFVKNLDEQ 361
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ S+ L + F+ + S+KV+ + G+S+GFGFV F T E+ A+ MN
Sbjct: 362 IDSEKLEEEFKPFGTITSSKVMVDD-AGKSKGFGFVCFSTPEEATKAITEMN 412
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 81 SQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA 140
+Q + E +E +++ EAV E+ K + L+V NL + S L E F GT+
Sbjct: 323 AQKKRERTEELKKQYEAVRLEKLSKY----QGVNLFVKNLDEQIDSEKLEEEFKPFGTIT 378
Query: 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
S++++ D +S+GFGFV + EEA +AI + + G+ + V
Sbjct: 379 SSKVMVDDAG-KSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYV 423
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 16/174 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A +A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + +
Sbjct: 46 ANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD 105
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ A+ + + I G+ ++ + + P L+ + QG ++ NL
Sbjct: 106 GERALEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDAA 150
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ ++ L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG+
Sbjct: 151 IDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGM 203
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 200
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y N+ +T + R
Sbjct: 201 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNIDQEVTDEEFRK 251
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV F T + Q+A+D MN
Sbjct: 252 MFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMN 294
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 60/216 (27%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T ++F + G + SA + D+ +SRGFGFV + + A+ A+
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHDSAQAAVDEM 293
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ +I G+ + V E+ + E A + + + YQG +Y NL
Sbjct: 294 NDKEIKGQKLYVGRAQKKHEREEELRKQYEAARL--EKASKYQGV-----NLYVKNLTDD 346
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYT--------------------------------- 253
+ + LR+ F + SAKV+ + T
Sbjct: 347 VDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESE 406
Query: 254 -----------GRSRGFGFVTFETAEDLQSALDAMN 278
G+S+GFGFV F + ++ A+ MN
Sbjct: 407 EEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMN 442
Score = 38.1 bits (87), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 58/145 (40%), Gaps = 46/145 (31%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LYV NL + L E+F+ GT+ SA+++
Sbjct: 309 QKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVM 368
Query: 146 YDRVT--------------------------------------------DRSRGFGFVTM 161
D VT +S+GFGFV
Sbjct: 369 RDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCF 428
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKV 186
S +EA +A+ + + G+ + V
Sbjct: 429 SSPDEASKAVTEMNQRMVNGKPLYV 453
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ ++ L D F +LS KV+ + S+G+GFV FET E + A+D MNG+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMNGM 161
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + + G+SRGFGFV+FE ED Q A+D MNG
Sbjct: 210 WFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNG 253
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 14/179 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E F + G S +++ D +SRGFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G + G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F G++ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 16/166 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYVG+L +++T S L + F + GTV + + D VT RS G+G+V + ++A AI+
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + G+ ++V + + P ++ S G I+ NL + + L D
Sbjct: 98 NYIPLYGKPIRVMY---------SHRDPSVRRSGAG------NIFIKNLDESIDHKALHD 142
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
F ++S KV + +G+S+G+GFV + E Q A++ +NG+
Sbjct: 143 TFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGM 187
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 92/179 (51%), Gaps = 14/179 (7%)
Query: 101 EEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVT 160
+P V S A +++ NL S+ +L + F+ G + S ++ D + +S+G+GFV
Sbjct: 113 HRDPSVRRSG-AGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQ 170
Query: 161 MGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220
+ E A++AI +G + + V V R ER + K + + +Y
Sbjct: 171 YANEESAQKAIEKLNGMLLNDKQVYVG--PFLRRQERDSTANKTKFT---------NVYV 219
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL T L++AF G+ G +++ V+ + G+S+GFGFV FE A+D A++++NG
Sbjct: 220 KNLAESTTDDDLKNAF-GEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNG 277
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 13/188 (6%)
Query: 98 VEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFG 157
+ +E A + +YV NL S T L F E G + SA ++ D +S+GFG
Sbjct: 200 LRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFG 258
Query: 158 FVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY-QGFVDSPH 216
FV + ++A A+ +G + + V R +++ +L+ Y Q ++
Sbjct: 259 FVNFENADDAARAVESLNGHKFDDKEWYVG-----RAQKKSERETELRVRYEQNLKEAAD 313
Query: 217 K-----IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271
K +Y NL ++ + L++ F + S+KV+ + G S+G GFV F T E+
Sbjct: 314 KFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFATPEEAT 372
Query: 272 SALDAMNG 279
A+ ++G
Sbjct: 373 EAMSQLSG 380
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD-EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVY 146
++ E E E V E+ K AA +++ LYV NL S++ L E+F+ GTV S++++
Sbjct: 292 KKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMR 351
Query: 147 DRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
D S+G GFV + EEA EA+ G I + + V
Sbjct: 352 DP-NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYV 390
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 87/170 (51%), Gaps = 16/170 (9%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+A LYVG L S+T + L E+F+ G VAS + D VT RS G+ +V + + + A
Sbjct: 46 HSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERA 105
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQ 230
+ + + I G+ ++ + + P L+ + QG ++ NL + ++
Sbjct: 106 LEDLNYTLIKGKPCRIMW---------SQRDPALRKTGQG------NVFIKNLDAAIDNK 150
Query: 231 GLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + + G S+G+GFV +ETAE +A+ +NG+
Sbjct: 151 ALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIKHVNGM 199
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A AI+
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHV 196
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V + + ++ K + F + +Y NL ++ + R
Sbjct: 197 NGMLLNDKKVFVGH-HISKKDRQS----KFEEMKANFTN----VYIKNLDQEISEEEFRQ 247
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
F+ + G +++ + G+SRGFGFV + T + Q+A+D MN
Sbjct: 248 MFE-KFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMN 290
Score = 38.5 bits (88), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 85/222 (38%), Gaps = 66/222 (29%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ NL ++ ++F + G + SA + D+ +SRGFGFV + + A+ A+
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQ-EGKSRGFGFVNYSTHDSAQAAVDEM 289
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+ ++ G+ + V E+ + E A + + + YQG +Y NL
Sbjct: 290 NDKEVKGQKLYVGRAQKKHEREEELRKQYEAARL--EKASKYQGV-----NLYVKNLTDD 342
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFE------------------------------------ 250
+ + LR+ F + SAKV+ +
Sbjct: 343 IDDEKLREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKE 402
Query: 251 --------------RYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ G+S+GFGFV F + ++ A+ MN
Sbjct: 403 SGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMN 444
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 52/151 (34%)
Query: 88 EQEEEEEEEAVEEEEEPKV--AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE ++ E ++ A+ + LYV NL + L E+FA GT+ SA+++
Sbjct: 305 QKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVM 364
Query: 146 YD--------------------------------------------------RVTDRSRG 155
D +V +S+G
Sbjct: 365 RDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKG 424
Query: 156 FGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186
FGFV S +EA +A+ + I G+ + V
Sbjct: 425 FGFVCFSSPDEASKAVTEMNQRMINGKPLYV 455
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 103/204 (50%), Gaps = 18/204 (8%)
Query: 77 VTEDSQDEPETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEA 136
+T+ + ++ E ++++++A E V S +A LYVG+L S++ + L ++F+
Sbjct: 4 ITDKTAEQLENLNIQDDQKQAATGSESQSVENS--SASLYVGDLEPSVSEAHLYDIFSPI 61
Query: 137 GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGE 196
G+V+S + D +T S G+ +V E ++AI + + I GR ++ +
Sbjct: 62 GSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMW-------- 113
Query: 197 RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRS 256
+ P L+ G I+ NL + ++ L D F +LS+K+ + G+S
Sbjct: 114 -SQRDPSLRKKGSG------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKS 165
Query: 257 RGFGFVTFETAEDLQSALDAMNGV 280
+GFGFV FE + A+DA+NG+
Sbjct: 166 KGFGFVHFEEEGAAKEAIDALNGM 189
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
LYV N+ T E+FA+ G + SA + D + +GFGFV E+A +A+
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKD-ADGKLKGFGFVNYEKHEDAVKAVEAL 279
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAG------NLGWGLT 228
+ S++ G + V + ER + L+ Y+ + Y G NL +
Sbjct: 280 NDSELNGEKLYVG--RAQKKNERMHV---LKKQYEAYRLEKMAKYQGVNLFVKNLDDSVD 334
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L + F + SAKV+ G+S+GFGFV F T E+ A+ N
Sbjct: 335 DEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATKAITEKN 383
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL + + +L + F+ G + S++I D +S+GFGFV AKEAI
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAI 183
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G+ + V P + R ER + + + Y +Y N+ T +
Sbjct: 184 DALNGMLLNGQEIYVA-PHLSR-KERDSQLEETKAHYTN-------LYVKNINSETTDEQ 234
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
++ F + G + + + + G+ +GFGFV +E ED A++A+N
Sbjct: 235 FQELF-AKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEA 167
A + L+V NL S+ L E FA GT+ SA+++ +S+GFGFV + EEA
Sbjct: 317 AKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTE-NGKSKGFGFVCFSTPEEA 375
Query: 168 KEAIRLFDGSQIGGRTVKV 186
+AI + + G+ + V
Sbjct: 376 TKAITEKNQQIVAGKPLYV 394
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAK 168
+DE L++G+L Y M + L FA G + SA+++ ++ T + G+GF+ S A+
Sbjct: 58 ADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAE 117
Query: 169 EAIRLFDGSQIGG---RTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSP-HKIYAGNLG 224
++ F+ + I + ++N+ + G +R DSP + I+ G+L
Sbjct: 118 RVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRD--------------DSPDYTIFVGDLA 163
Query: 225 WGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+T L + F+ P + AKV+ +R TGR++G+GFV F + A+ MNGV
Sbjct: 164 ADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGV 220
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 115 LYVGNLPYSMTSSSLAEVF-AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L E F A +V A++V DRVT R++G+GFV E A+
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERAAMGPK--LQNSYQGFV--DSPHK--IYAGNLGWGL 227
+G R +++ P ++ G + Q+S G + P+ ++ G L +
Sbjct: 217 MNGVPCSTRPMRIG----PAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASV 272
Query: 228 TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L++ F ++ K+ + GFV F + AL +NGV
Sbjct: 273 TDDHLKNVFSQYGEIVHVKIP------AGKRCGFVQFSEKSCAEEALRMLNGV 319
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L S+T L VF++ G EIV+ ++ R GFV A+EA+R+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYG-----EIVHVKIPAGKR-CGFVQFSEKSCAEEALRML 316
Query: 175 DGSQIGGRTVKVNFPEVP 192
+G Q+GG TV++++ P
Sbjct: 317 NGVQLGGTTVRLSWGRSP 334
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172
A LYVG L ++T + L +VF+ G ++S + D VT S G+ +V E K+AI+
Sbjct: 50 ASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQ 109
Query: 173 LFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGL 232
+ ++I GR ++ + E P ++ G I+ NL + ++ L
Sbjct: 110 ELNYAEINGRPCRIMWSE---------RDPAIRKKGSG------NIFIKNLHPAIDNKAL 154
Query: 233 RDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ F +LS KV + G SRGFGFV F+ D + A++A+NG+
Sbjct: 155 HETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAIEAVNGM 201
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 11/168 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+ +++ NL ++ + +L E F+ G V S ++ D SRGFGFV +AK+AI
Sbjct: 137 SGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDE-NGNSRGFGFVHFKEESDAKDAI 195
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+G + G V V VP+ + KL+ + F + IY N+ T +
Sbjct: 196 EAVNGMLMNGLEVYVAM-HVPKKDRIS----KLEEAKANFTN----IYVKNIDVETTDEE 246
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F Q G + + + + G+ +GFGFV F A++ +NG
Sbjct: 247 FEQLF-SQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNG 293
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 13/170 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ T ++F++ G + SA + D + +GFGFV A +A+
Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEEL 291
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGF-VDSPHK-----IYAGNLGWGLT 228
+G + + + V R ++ +L+ Y+ + ++ K ++ NL +
Sbjct: 292 NGKEFKSQALYVG-----RAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSID 346
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+ L++ F + SA+V+ ++ G S+GFGFV F + E+ A+ N
Sbjct: 347 DEKLKEEFAPYGTITSARVMRDQ-EGNSKGFGFVCFSSPEEATKAMTEKN 395
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ L++ NL S+ L E FA GT+ SA ++ D+ + S+GFGFV S EEA +A
Sbjct: 332 QGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGN-SKGFGFVCFSSPEEATKA 390
Query: 171 IRLFDGSQIGGRTVKV 186
+ + + G+ + V
Sbjct: 391 MTEKNQQIVAGKPLYV 406
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 93/177 (52%), Gaps = 16/177 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
++ + L++G+L M + + VFA++G SA+++ +++T +S G+GF+ S
Sbjct: 54 GSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSV 113
Query: 167 AKEAIRLFDGSQIGG--RTVKVNFPEVPRGGER-AAMGPKLQNSYQGFVDSPHKIYAGNL 223
A+ ++ ++G+ + +T ++N+ + G +R GP H I+ G+L
Sbjct: 114 AERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPD------------HTIFVGDL 161
Query: 224 GWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
+T L D F+ G + AKV+ +R TGRS+G+GFV F + A+ MNG
Sbjct: 162 APEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNG 218
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 78/174 (44%), Gaps = 19/174 (10%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173
++VG+L +T L++ F G+V A++V DR T RS+G+GFV E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 174 FDGSQIGGRTVKVNFPEVPRGGERA-AMGPKLQNSYQGFV---DSPHK--IYAGNLGWGL 227
+G R +++ P + A M P + + QG + P+ I+ G L +
Sbjct: 216 MNGQYCSTRPMRIG----PAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 228 TSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
T L+ F GQ G LL K+ + GFV + + AL +NG
Sbjct: 272 TDDELKSIF-GQFGELLHVKIP------PGKRCGFVQYANKASAEHALSVLNGT 318
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
++VG L ++T L +F + G E+++ ++ R GFV + A+ A+ +
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFG-----ELLHVKIPPGKR-CGFVQYANKASAEHALSVL 315
Query: 175 DGSQIGGRTVKVNFPEVP---------RGGERAAMGPKLQNSYQGFVDSP 215
+G+Q+GG+++++++ P GG P+ Q Y G+ P
Sbjct: 316 NGTQLGGQSIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQGGY-GYAAQP 364
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L+D
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKD 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L ++F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 17/174 (9%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A S A LYVG+L +T + L E F+ AG + S + D +T RS G+ +V +
Sbjct: 5 APSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPAD 64
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
A+ A+ + I G+ V++ + + P L+ S G I+ NL
Sbjct: 65 AERALDTMNFDVIKGKPVRIMW---------SQRDPSLRKSGVG------NIFIKNLDKS 109
Query: 227 LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
+ ++ L D F +LS KV+ + S+G+GFV FET E + A++ MNG+
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 161
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 89/179 (49%), Gaps = 14/179 (7%)
Query: 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEE 166
A + E +Y+ N M L E+F + G S +++ D + +S+GFGFV+ E+
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 167 AKEAIRLFDGSQIGGRTVKVNFPE--VPRGGERAAMGPKLQNS----YQGFVDSPHKIYA 220
A++A+ +G ++ G+ + V + V R E +++ YQG +Y
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGV-----NLYV 298
Query: 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
NL G+ + LR F + SAKV+ E GRS+GFGFV F + E+ A+ MNG
Sbjct: 299 KNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNG 355
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 12/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + F+ G + S ++V D + S+G+GFV + E A+ AI
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 158
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + R V V R R +L + F + +Y N G + + L++
Sbjct: 159 NGMLLNDRKVFVG-----RFKSRKEREAELGARAKEFTN----VYIKNFGEDMDDERLKE 209
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F LS KV+ + +G+S+GFGFV+FE ED Q A+D MNG
Sbjct: 210 LFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNG 253
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170
+ LYV NL + L + F+ GT+ SA+++ + RS+GFGFV S EEA +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKA 349
Query: 171 IRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSY 208
+ +G + + + V + R ER A L N Y
Sbjct: 350 VTEMNGRIVATKPLYVALAQ--RKEERQA---HLTNQY 382
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 16/169 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D +T RS G+ +V S + ++A+
Sbjct: 64 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKAL 123
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + QG ++ NL + ++
Sbjct: 124 EELNYTLIKGRPCRIMW---------SQRDPALRKTGQG------NVFIKNLDVAIDNKA 168
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + G S+G+GFV +ET E A+ +N +
Sbjct: 169 LHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHVNNM 216
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 11/165 (6%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL ++ + +L + FA G + S ++ D S+G+GFV + E A +AI+
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+ + + V V + +P+ ++ K + F + IY N+ T + RD
Sbjct: 214 NNMLLNEKKVYVGY-HIPKKDRQS----KFEEMKANFTN----IYVKNISLEATDEEFRD 264
Query: 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
F + G +++ + G+SRGFGFV F T E A++ +NG
Sbjct: 265 LF-AKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNG 308
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 81/216 (37%), Gaps = 60/216 (27%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ T ++FA+ G V S+ + D +SRGFGFV + E A +A+
Sbjct: 248 IYVKNISLEATDEEFRDLFAKYGDVTSSSLARDS-EGKSRGFGFVNFTTHECAAKAVEEL 306
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G + G+ + V E+ + E A + + N YQG +Y NL
Sbjct: 307 NGKEFRGQDLYVGRAQKKHEREEELRKSYEAARL--EKANKYQGV-----NLYIKNLADD 359
Query: 227 LTSQGLRDAFQGQPGLLSAKVIF------------------------------------- 249
+ LR F + SAKV+
Sbjct: 360 IDDDKLRQMFSEYGPITSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAE 419
Query: 250 -------ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+R G+S+GFGFV F +D A+ MN
Sbjct: 420 KKTEKKGDRRLGKSKGFGFVCFSNPDDATKAVAEMN 455
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 46/145 (31%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE + E ++ ++ + LY+ NL + L ++F+E G + SA+++
Sbjct: 322 QKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVM 381
Query: 146 YDRVTD--------------------------------------------RSRGFGFVTM 161
D VT+ +S+GFGFV
Sbjct: 382 RDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCF 441
Query: 162 GSVEEAKEAIRLFDGSQIGGRTVKV 186
+ ++A +A+ + I G+ + V
Sbjct: 442 SNPDDATKAVAEMNQRMIEGKPLYV 466
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F++ G+VAS + D VT RS G+ +V + + ++A+
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ + I GR ++ + + P L+ + G I+ NL + ++
Sbjct: 119 EELNYTLIKGRPCRIMWSQ---------RDPALRKTGAG------NIFIKNLDAAIDNKA 163
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + + G S+G+GFV +ET E A+ +NG+
Sbjct: 164 LHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGM 211
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 84/168 (50%), Gaps = 11/168 (6%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
A +++ NL ++ + +L + FA G + S ++ D + S+G+GFV + E A +AI
Sbjct: 147 AGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAI 205
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ +G + + V V +P+ ++ K + F + +Y N+ +T +
Sbjct: 206 KHVNGMLLNEKKVYVGH-HIPKKDRQS----KFEEMKANFTN----VYVKNINNEVTDEE 256
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
R+ F + G +++ + G+SRGFGFV F T E A+D +NG
Sbjct: 257 FRELF-AKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNG 303
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 83/212 (39%), Gaps = 56/212 (26%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+YV N+ +T E+FA+ G V S+ + D+ +SRGFGFV + E A +A+
Sbjct: 243 VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-EGKSRGFGFVNFTTHEAAAQAVDEL 301
Query: 175 DGSQIGGRTVKVNFP--------EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG 226
+G G+ + V E+ + E A + + N YQG +Y NLG
Sbjct: 302 NGKDFRGQDLYVGRAQKKHEREEELRKSYEAARL--EKANKYQGV-----NLYIKNLGDD 354
Query: 227 LTSQGLRDAFQGQPGLLSAKVIF------------------------------------- 249
+ LR F + SAKV+
Sbjct: 355 VDDDKLRAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTE 414
Query: 250 ---ERYTGRSRGFGFVTFETAEDLQSALDAMN 278
+R G+S+GFGFV F +D A+ MN
Sbjct: 415 KKGDRKLGKSKGFGFVCFSNPDDATKAVTEMN 446
Score = 31.2 bits (69), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 42/141 (29%)
Query: 88 EQEEEEEEEAVEEEEEPKVAASD--EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+++ E EEE + E ++ ++ + LY+ NL + L +F+E G + SA+++
Sbjct: 317 QKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVM 376
Query: 146 Y----------------------------------------DRVTDRSRGFGFVTMGSVE 165
DR +S+GFGFV + +
Sbjct: 377 RDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPD 436
Query: 166 EAKEAIRLFDGSQIGGRTVKV 186
+A +A+ + + G+ + V
Sbjct: 437 DATKAVTEMNQRMVDGKPLYV 457
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ S I G++ ++ + + P L+ + QG I+ NL + ++
Sbjct: 105 EHLNYSLIKGQSCRIMW---------SQRDPALRKTGQG------NIFIKNLDQSIDNKA 149
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + G+SRGF FV + T E +A+ A+NG+
Sbjct: 150 LHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAVNGM 197
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + FA G + S ++ D +SRGF FV + E A AI+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G++ + K++ F + +Y N+ +T D
Sbjct: 195 NGMLLNDKKVYVGH----HVGKKERLS-KVEELRAQFTN----VYIKNVDLEVTDAEFED 245
Query: 235 AFQGQPGLLSAKVIFER-YTGRSRGFGFVTFETAEDLQSALDAMN 278
+P + V R G S+GFGFV +E E + A+D +N
Sbjct: 246 LV--KPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELN 288
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+T+ E E E + EE+ + A LYV NL L F GT+ S++++
Sbjct: 303 QTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVM 362
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF---PEVPRGGERAAMGP 202
D + SRGFGFV S +EA +A+ +G IG + + V +V R + +
Sbjct: 363 RDD-SGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQ 421
Query: 203 KLQN---------SYQGFVDSPHKIYAGNLGWGLTSQGL---RDAFQGQPG 241
+ Q QG++ P Y G+G G+ R G PG
Sbjct: 422 RAQQRMQYGAGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPPVRGPMMGYPG 472
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T + ++ G S + D S+GFGFV + E A++A+
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYENHESARKAVDEL 287
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ-GFVDSPHK-----IYAGNLGWGLT 228
+ ++ G+ + + ER A +L+ S++ +++ K +Y NL
Sbjct: 288 NEKEVNGKKLYAGRAQT--KSEREA---ELKKSHEEKRLENEAKSAGVNLYVKNLDDEWD 342
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR F+ + S+KV+ + +G SRGFGFV + + ++ A+ MNG
Sbjct: 343 DDRLRAEFEAFGTITSSKVMRDD-SGVSRGFGFVCYSSPDEATKAVSEMNG 392
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171
+A LYVG L S+T + L E+F G VAS + D VT RS G+ +V + + + A+
Sbjct: 45 SASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERAL 104
Query: 172 RLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231
+ S I G++ ++ + + P L+ + QG I+ NL + ++
Sbjct: 105 EHLNYSLIKGQSCRIMW---------SQRDPALRKTGQG------NIFIKNLDQSIDNKA 149
Query: 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280
L D F +LS KV + G+SRGF FV + T E +A+ A+NG+
Sbjct: 150 LHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAVNGM 197
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 13/165 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+++ NL S+ + +L + FA G + S ++ D +SRGF FV + E A AI+
Sbjct: 136 IFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAV 194
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234
+G + + V V G++ + K++ F + +Y N+ +T D
Sbjct: 195 NGMLLNDKKVYVGH----HVGKKERLS-KVEELRAQFTN----VYIKNVDLEVTDAEFED 245
Query: 235 AFQGQPGLLSAKVIFER-YTGRSRGFGFVTFETAEDLQSALDAMN 278
+P + V R G S+GFGFV +E E + A+D +N
Sbjct: 246 LV--KPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELN 288
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 86 ETEQEEEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145
+T+ E E E + EE+ + A LYV NL L F GT+ S++++
Sbjct: 303 QTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVM 362
Query: 146 YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF---PEVPRGGERAAMGP 202
D + SRGFGFV S +EA +A+ +G IG + + V +V R + +
Sbjct: 363 RDD-SGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQ 421
Query: 203 KLQN---------SYQGFVDSPHKIYAGNLGWGLTSQGL---RDAFQGQPG 241
+ Q QG++ P Y G+G G+ R G PG
Sbjct: 422 RAQQRMQYGAGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPPVRGPMMGYPG 472
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174
+Y+ N+ +T + ++ G S + D S+GFGFV + E A++A+
Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYENHESARKAVDEL 287
Query: 175 DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQ-GFVDSPHK-----IYAGNLGWGLT 228
+ ++ G+ + + ER A +L+ S++ +++ K +Y NL
Sbjct: 288 NEKEVNGKKLYAGRAQT--KSEREA---ELKKSHEEKRLENEAKSAGVNLYVKNLDDEWD 342
Query: 229 SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279
LR F+ + S+KV+ + +G SRGFGFV + + ++ A+ MNG
Sbjct: 343 DDRLRAEFEAFGTITSSKVMRDD-SGVSRGFGFVCYSSPDEATKAVSEMNG 392
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,294,817
Number of Sequences: 539616
Number of extensions: 4186952
Number of successful extensions: 68744
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 449
Number of HSP's that attempted gapping in prelim test: 47217
Number of HSP's gapped (non-prelim): 13242
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)