Query 023583
Match_columns 280
No_of_seqs 299 out of 2368
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:08:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.3E-33 7.2E-38 246.5 20.6 156 108-280 103-258 (346)
2 TIGR01645 half-pint poly-U bin 100.0 1.8E-32 3.9E-37 253.9 19.6 167 108-280 103-269 (612)
3 KOG0113 U1 small nuclear ribon 100.0 1.9E-32 4.2E-37 226.0 10.4 164 25-190 2-179 (335)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.6E-31 1.2E-35 235.6 19.8 153 111-280 2-154 (352)
5 KOG0148 Apoptosis-promoting RN 100.0 1.2E-30 2.5E-35 212.9 15.2 166 108-280 58-223 (321)
6 TIGR01622 SF-CC1 splicing fact 100.0 2.4E-29 5.2E-34 232.6 20.7 168 107-280 84-251 (457)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.6E-29 9.9E-34 223.3 21.7 170 111-280 88-334 (352)
8 KOG0144 RNA-binding protein CU 100.0 1.2E-29 2.5E-34 218.8 12.4 153 111-280 33-188 (510)
9 TIGR01628 PABP-1234 polyadenyl 100.0 9.4E-29 2E-33 234.0 19.1 151 114-280 2-152 (562)
10 KOG0145 RNA-binding protein EL 100.0 3.3E-28 7.2E-33 197.5 12.5 153 111-280 40-192 (360)
11 TIGR01628 PABP-1234 polyadenyl 99.9 1.3E-26 2.7E-31 219.5 17.9 170 109-280 175-349 (562)
12 KOG0131 Splicing factor 3b, su 99.9 3.5E-27 7.7E-32 182.2 11.4 157 108-280 5-162 (203)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.9E-26 8.4E-31 213.9 19.7 166 108-280 171-360 (509)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.1E-25 4.6E-30 206.8 20.8 164 110-280 273-459 (481)
15 KOG0127 Nucleolar protein fibr 99.9 1.6E-25 3.4E-30 198.3 18.8 166 111-277 116-354 (678)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.7E-25 3.7E-30 207.5 19.8 155 111-280 1-157 (481)
17 KOG0117 Heterogeneous nuclear 99.9 7.6E-26 1.6E-30 196.2 15.1 163 110-280 81-316 (506)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.5E-25 7.5E-30 207.5 20.4 171 110-280 293-487 (509)
19 TIGR01648 hnRNP-R-Q heterogene 99.9 1.9E-25 4.1E-30 207.0 17.4 145 110-278 56-203 (578)
20 KOG0127 Nucleolar protein fibr 99.9 2.3E-25 4.9E-30 197.3 15.1 168 112-280 5-181 (678)
21 KOG0124 Polypyrimidine tract-b 99.9 2.5E-25 5.4E-30 188.6 7.5 161 112-278 113-273 (544)
22 KOG0145 RNA-binding protein EL 99.9 1.3E-23 2.8E-28 170.9 15.6 170 111-280 126-343 (360)
23 TIGR01648 hnRNP-R-Q heterogene 99.9 2E-23 4.4E-28 193.5 17.5 153 108-280 134-292 (578)
24 TIGR01622 SF-CC1 splicing fact 99.9 8.8E-23 1.9E-27 188.9 20.9 164 112-279 186-432 (457)
25 KOG0123 Polyadenylate-binding 99.9 8E-23 1.7E-27 181.5 15.4 136 114-280 3-138 (369)
26 KOG0109 RNA-binding protein LA 99.9 4.6E-23 1E-27 170.1 9.5 133 113-280 3-135 (346)
27 KOG0110 RNA-binding protein (R 99.9 5.4E-22 1.2E-26 181.1 15.7 158 115-280 518-678 (725)
28 KOG0146 RNA-binding protein ET 99.9 2.4E-21 5.2E-26 158.3 13.4 172 108-280 15-350 (371)
29 KOG0147 Transcriptional coacti 99.9 1.7E-22 3.6E-27 179.9 5.7 173 104-280 171-343 (549)
30 KOG0105 Alternative splicing f 99.8 3.7E-20 8.1E-25 143.6 14.9 160 110-279 4-172 (241)
31 KOG4205 RNA-binding protein mu 99.8 4.6E-21 1E-25 164.9 9.8 153 111-275 5-157 (311)
32 KOG0144 RNA-binding protein CU 99.8 1.3E-20 2.7E-25 163.2 10.5 80 110-190 122-204 (510)
33 KOG0123 Polyadenylate-binding 99.8 1.1E-19 2.4E-24 161.5 14.7 153 115-280 79-231 (369)
34 KOG0148 Apoptosis-promoting RN 99.8 9.1E-20 2E-24 149.3 10.7 125 109-280 3-127 (321)
35 TIGR01645 half-pint poly-U bin 99.8 3.1E-18 6.7E-23 159.5 18.5 81 110-190 202-282 (612)
36 KOG4206 Spliceosomal protein s 99.8 7.1E-18 1.5E-22 135.6 15.8 164 109-280 6-206 (221)
37 PLN03134 glycine-rich RNA-bind 99.8 6.3E-18 1.4E-22 131.6 13.3 86 108-193 30-115 (144)
38 KOG4211 Splicing factor hnRNP- 99.8 6.5E-17 1.4E-21 142.7 17.4 159 108-276 6-164 (510)
39 KOG4212 RNA-binding protein hn 99.7 1.3E-16 2.8E-21 138.7 17.0 167 111-279 43-278 (608)
40 KOG0147 Transcriptional coacti 99.7 3.5E-17 7.5E-22 146.2 11.5 165 110-279 276-512 (549)
41 COG0724 RNA-binding proteins ( 99.7 5.6E-16 1.2E-20 132.9 14.9 161 112-272 115-282 (306)
42 PF00076 RRM_1: RNA recognitio 99.7 2.6E-16 5.6E-21 107.2 9.1 70 115-185 1-70 (70)
43 KOG0106 Alternative splicing f 99.7 9.5E-17 2.1E-21 130.4 8.0 152 113-280 2-156 (216)
44 KOG1548 Transcription elongati 99.7 3.2E-15 6.8E-20 126.7 16.2 163 112-279 134-336 (382)
45 KOG0149 Predicted RNA-binding 99.6 6.2E-16 1.3E-20 124.8 7.4 80 111-191 11-90 (247)
46 PLN03134 glycine-rich RNA-bind 99.6 4.3E-15 9.4E-20 115.6 11.0 68 213-280 32-99 (144)
47 KOG0122 Translation initiation 99.6 2.5E-15 5.4E-20 121.9 9.7 84 108-191 185-268 (270)
48 PF14259 RRM_6: RNA recognitio 99.6 2.8E-15 6.1E-20 102.3 8.5 70 115-185 1-70 (70)
49 KOG1457 RNA binding protein (c 99.6 2.8E-14 6.1E-19 114.3 15.0 168 109-280 31-271 (284)
50 KOG0121 Nuclear cap-binding pr 99.6 2.2E-15 4.8E-20 110.4 7.5 84 108-191 32-115 (153)
51 KOG0107 Alternative splicing f 99.6 3.4E-15 7.4E-20 115.3 7.6 78 111-193 9-86 (195)
52 KOG0126 Predicted RNA-binding 99.6 1.4E-16 3E-21 123.6 -0.5 84 107-190 30-113 (219)
53 KOG0110 RNA-binding protein (R 99.6 1.6E-14 3.4E-19 132.7 12.2 167 108-280 381-583 (725)
54 PLN03120 nucleic acid binding 99.6 1.5E-14 3.2E-19 120.6 10.2 76 112-191 4-79 (260)
55 KOG0125 Ataxin 2-binding prote 99.6 1.1E-14 2.5E-19 122.6 8.9 84 107-192 91-174 (376)
56 TIGR01659 sex-lethal sex-letha 99.6 3.3E-14 7.2E-19 125.9 11.6 82 111-192 192-275 (346)
57 KOG1190 Polypyrimidine tract-b 99.6 1.4E-13 2.9E-18 119.2 14.9 159 112-279 297-474 (492)
58 KOG4207 Predicted splicing fac 99.5 8.8E-15 1.9E-19 115.8 6.5 83 108-190 9-91 (256)
59 KOG0149 Predicted RNA-binding 99.5 9.9E-15 2.2E-19 117.9 6.4 62 216-277 13-74 (247)
60 KOG0124 Polypyrimidine tract-b 99.5 5.2E-14 1.1E-18 120.2 11.0 82 108-189 206-287 (544)
61 PF00076 RRM_1: RNA recognitio 99.5 3.4E-14 7.4E-19 96.6 8.0 62 218-280 1-62 (70)
62 PLN03213 repressor of silencin 99.5 5.6E-14 1.2E-18 124.2 9.7 77 110-190 8-86 (759)
63 KOG0120 Splicing factor U2AF, 99.5 4.8E-14 1E-18 127.5 8.9 172 109-280 286-477 (500)
64 KOG0114 Predicted RNA-binding 99.5 1.3E-13 2.8E-18 97.4 9.0 80 108-190 14-93 (124)
65 smart00362 RRM_2 RNA recogniti 99.5 1.7E-13 3.6E-18 92.9 9.0 72 114-187 1-72 (72)
66 KOG0108 mRNA cleavage and poly 99.5 5.7E-14 1.2E-18 126.3 8.3 81 113-193 19-99 (435)
67 KOG0130 RNA-binding protein RB 99.5 1.1E-13 2.4E-18 102.4 7.8 87 106-192 66-152 (170)
68 PLN03121 nucleic acid binding 99.5 2.1E-13 4.5E-18 112.1 10.2 77 111-191 4-80 (243)
69 KOG0122 Translation initiation 99.5 9E-14 2E-18 112.9 7.8 68 213-280 187-254 (270)
70 KOG0129 Predicted RNA-binding 99.5 7.5E-13 1.6E-17 118.0 13.9 164 110-276 257-432 (520)
71 smart00360 RRM RNA recognition 99.5 3.1E-13 6.7E-18 91.2 8.6 71 117-187 1-71 (71)
72 PF14259 RRM_6: RNA recognitio 99.4 6.1E-13 1.3E-17 90.6 7.7 61 218-279 1-61 (70)
73 cd00590 RRM RRM (RNA recogniti 99.4 2.3E-12 4.9E-17 87.7 10.0 74 114-188 1-74 (74)
74 KOG0415 Predicted peptidyl pro 99.4 7.4E-13 1.6E-17 112.7 8.8 84 107-190 234-317 (479)
75 KOG0111 Cyclophilin-type pepti 99.4 1.8E-13 3.9E-18 109.4 4.5 88 109-196 7-94 (298)
76 KOG4212 RNA-binding protein hn 99.4 1.6E-11 3.5E-16 107.3 15.3 77 111-188 214-290 (608)
77 KOG0126 Predicted RNA-binding 99.4 3.9E-14 8.5E-19 110.0 -0.9 66 215-280 35-100 (219)
78 KOG0125 Ataxin 2-binding prote 99.4 1E-12 2.2E-17 110.9 7.3 67 212-280 93-159 (376)
79 KOG1365 RNA-binding protein Fu 99.4 2.4E-12 5.3E-17 110.7 8.8 165 112-279 161-346 (508)
80 KOG0114 Predicted RNA-binding 99.4 3.7E-12 7.9E-17 90.1 8.1 63 215-280 18-80 (124)
81 KOG0121 Nuclear cap-binding pr 99.4 1.6E-12 3.5E-17 95.4 6.1 67 214-280 35-101 (153)
82 smart00361 RRM_1 RNA recogniti 99.3 5.7E-12 1.2E-16 85.9 7.9 61 126-186 2-69 (70)
83 KOG0120 Splicing factor U2AF, 99.3 3.4E-12 7.4E-17 115.6 8.3 164 110-280 173-354 (500)
84 KOG4207 Predicted splicing fac 99.3 2.7E-12 5.8E-17 101.9 5.9 69 212-280 10-78 (256)
85 KOG0113 U1 small nuclear ribon 99.3 7.1E-12 1.5E-16 104.6 8.6 68 213-280 99-166 (335)
86 smart00362 RRM_2 RNA recogniti 99.3 1.3E-11 2.7E-16 83.5 8.1 62 217-280 1-62 (72)
87 KOG0117 Heterogeneous nuclear 99.3 2.9E-11 6.4E-16 106.0 12.1 107 162-280 42-148 (506)
88 PLN03120 nucleic acid binding 99.3 8.8E-12 1.9E-16 104.1 8.3 62 215-280 4-65 (260)
89 KOG1456 Heterogeneous nuclear 99.3 2.3E-10 5.1E-15 98.3 15.8 166 107-279 282-469 (494)
90 smart00360 RRM RNA recognition 99.3 1.8E-11 3.9E-16 82.4 7.3 61 220-280 1-61 (71)
91 PF13893 RRM_5: RNA recognitio 99.3 1.6E-11 3.5E-16 79.8 6.5 56 129-189 1-56 (56)
92 KOG4211 Splicing factor hnRNP- 99.3 1.7E-10 3.7E-15 102.5 14.8 162 110-275 101-339 (510)
93 KOG4208 Nucleolar RNA-binding 99.3 3.7E-11 7.9E-16 95.6 9.4 86 107-192 44-130 (214)
94 PLN03121 nucleic acid binding 99.2 2.8E-11 6E-16 99.6 8.5 63 214-280 4-66 (243)
95 KOG4454 RNA binding protein (R 99.2 2.2E-12 4.8E-17 103.2 1.3 139 108-279 5-147 (267)
96 PLN03213 repressor of silencin 99.2 3.8E-11 8.2E-16 106.5 7.7 62 215-280 10-73 (759)
97 KOG1190 Polypyrimidine tract-b 99.2 4.4E-10 9.5E-15 97.7 13.8 160 112-280 150-358 (492)
98 KOG0107 Alternative splicing f 99.2 3.5E-11 7.5E-16 93.3 6.0 60 215-279 10-69 (195)
99 KOG0130 RNA-binding protein RB 99.2 4.5E-11 9.7E-16 88.7 5.8 68 213-280 70-137 (170)
100 cd00590 RRM RRM (RNA recogniti 99.2 2.2E-10 4.9E-15 77.7 8.3 63 217-280 1-63 (74)
101 KOG0131 Splicing factor 3b, su 99.2 3.4E-11 7.5E-16 93.9 4.5 66 214-279 8-73 (203)
102 COG0724 RNA-binding proteins ( 99.1 1.3E-10 2.9E-15 99.4 8.5 66 215-280 115-180 (306)
103 KOG0108 mRNA cleavage and poly 99.1 1.2E-10 2.5E-15 105.1 7.1 65 216-280 19-83 (435)
104 KOG4210 Nuclear localization s 99.1 1.9E-10 4.2E-15 99.0 6.9 159 110-275 86-245 (285)
105 KOG0109 RNA-binding protein LA 99.1 1.1E-10 2.3E-15 97.4 4.8 77 107-191 73-149 (346)
106 KOG0132 RNA polymerase II C-te 99.1 7.5E-10 1.6E-14 103.2 10.8 113 107-237 416-528 (894)
107 KOG0146 RNA-binding protein ET 99.1 2.3E-10 5E-15 94.3 6.2 84 107-190 280-363 (371)
108 KOG0128 RNA-binding protein SA 99.1 8.5E-12 1.8E-16 117.0 -2.5 134 111-279 666-799 (881)
109 smart00361 RRM_1 RNA recogniti 99.1 4.8E-10 1E-14 76.3 6.6 52 229-280 2-60 (70)
110 KOG1456 Heterogeneous nuclear 99.1 3E-09 6.5E-14 91.6 12.3 153 107-280 26-182 (494)
111 KOG0226 RNA-binding proteins [ 99.0 4.3E-10 9.3E-15 92.2 5.7 155 113-279 97-254 (290)
112 KOG1365 RNA-binding protein Fu 99.0 1E-08 2.2E-13 88.7 14.2 166 109-277 57-226 (508)
113 KOG4661 Hsp27-ERE-TATA-binding 99.0 2.7E-09 5.9E-14 96.4 9.0 85 110-194 403-487 (940)
114 KOG4205 RNA-binding protein mu 98.9 1.3E-09 2.9E-14 94.3 6.0 84 111-195 96-179 (311)
115 KOG4208 Nucleolar RNA-binding 98.9 4.2E-09 9.1E-14 84.0 7.2 68 213-280 47-115 (214)
116 KOG0111 Cyclophilin-type pepti 98.9 8.7E-10 1.9E-14 88.5 2.7 66 214-279 9-74 (298)
117 KOG0533 RRM motif-containing p 98.8 1.6E-08 3.5E-13 84.3 9.0 81 111-192 82-162 (243)
118 KOG0153 Predicted RNA-binding 98.8 1.3E-08 2.8E-13 87.1 8.1 76 110-191 226-302 (377)
119 KOG0226 RNA-binding proteins [ 98.8 1.9E-08 4.1E-13 82.6 8.2 82 109-190 187-268 (290)
120 KOG0116 RasGAP SH3 binding pro 98.8 1.8E-08 3.9E-13 90.6 8.6 83 108-191 284-366 (419)
121 KOG0105 Alternative splicing f 98.8 1E-08 2.2E-13 80.4 4.8 63 214-279 5-67 (241)
122 PF13893 RRM_5: RNA recognitio 98.8 2.4E-08 5.2E-13 64.7 5.9 44 232-280 1-44 (56)
123 KOG4206 Spliceosomal protein s 98.7 3.1E-08 6.7E-13 80.3 7.4 64 214-280 8-75 (221)
124 PF04059 RRM_2: RNA recognitio 98.7 1.8E-07 3.9E-12 67.1 10.0 78 113-190 2-85 (97)
125 KOG4209 Splicing factor RNPS1, 98.7 2E-08 4.3E-13 83.9 5.7 84 107-191 96-179 (231)
126 KOG0112 Large RNA-binding prot 98.7 1.4E-08 3E-13 96.3 4.2 148 107-280 367-514 (975)
127 KOG4660 Protein Mei2, essentia 98.7 2.1E-08 4.6E-13 90.7 4.8 74 107-185 70-143 (549)
128 KOG0415 Predicted peptidyl pro 98.6 7.4E-08 1.6E-12 82.7 5.9 70 211-280 235-304 (479)
129 KOG0533 RRM motif-containing p 98.5 1.8E-07 4E-12 78.1 6.6 65 215-280 83-147 (243)
130 PF04059 RRM_2: RNA recognitio 98.5 5.7E-07 1.2E-11 64.5 8.0 65 216-280 2-68 (97)
131 KOG2193 IGF-II mRNA-binding pr 98.5 2.5E-08 5.5E-13 87.3 -0.2 139 113-280 2-142 (584)
132 KOG4676 Splicing factor, argin 98.5 1.6E-07 3.5E-12 81.6 4.4 162 112-279 7-210 (479)
133 KOG0151 Predicted splicing reg 98.4 4.3E-07 9.2E-12 84.4 6.9 78 113-190 175-255 (877)
134 KOG0132 RNA polymerase II C-te 98.4 3.8E-07 8.2E-12 85.5 6.2 60 214-279 420-479 (894)
135 KOG4307 RNA binding protein RB 98.4 8.1E-07 1.7E-11 82.4 7.0 162 111-275 310-494 (944)
136 PF12220 U1snRNP70_N: U1 small 98.4 1.2E-07 2.6E-12 68.1 0.8 29 25-53 2-30 (94)
137 KOG0153 Predicted RNA-binding 98.3 1.2E-06 2.5E-11 75.3 5.5 58 214-277 227-284 (377)
138 KOG4209 Splicing factor RNPS1, 98.2 1.7E-06 3.7E-11 72.3 5.3 65 214-279 100-164 (231)
139 KOG1457 RNA binding protein (c 98.2 4.8E-06 1E-10 67.5 7.3 67 214-280 33-100 (284)
140 KOG0116 RasGAP SH3 binding pro 98.2 2.1E-06 4.5E-11 77.4 5.4 62 215-276 288-349 (419)
141 KOG3152 TBP-binding protein, a 98.2 3.8E-06 8.1E-11 69.4 6.1 74 111-184 73-158 (278)
142 KOG4661 Hsp27-ERE-TATA-binding 98.1 4.4E-06 9.6E-11 76.1 6.2 65 215-279 405-469 (940)
143 KOG4660 Protein Mei2, essentia 98.1 4.8E-06 1E-10 75.7 6.0 62 213-279 73-134 (549)
144 KOG1548 Transcription elongati 98.1 1.6E-05 3.4E-10 68.4 7.8 64 215-279 134-205 (382)
145 PF11608 Limkain-b1: Limkain b 98.0 3.4E-05 7.5E-10 53.0 7.6 70 113-192 3-77 (90)
146 KOG4454 RNA binding protein (R 98.0 2.5E-06 5.3E-11 68.9 2.0 65 214-280 8-72 (267)
147 KOG2314 Translation initiation 98.0 6.2E-05 1.4E-09 68.7 10.0 78 110-188 56-140 (698)
148 PF08777 RRM_3: RNA binding mo 97.9 2E-05 4.3E-10 57.8 5.6 56 216-277 2-57 (105)
149 KOG0128 RNA-binding protein SA 97.9 4.5E-07 9.8E-12 85.9 -4.0 161 111-279 570-731 (881)
150 KOG0151 Predicted splicing reg 97.9 2.5E-05 5.4E-10 73.0 6.8 68 213-280 172-242 (877)
151 KOG1995 Conserved Zn-finger pr 97.9 1.9E-05 4.1E-10 68.4 4.8 83 109-191 63-153 (351)
152 KOG4307 RNA binding protein RB 97.8 5.6E-05 1.2E-09 70.6 7.3 76 113-188 868-943 (944)
153 COG5175 MOT2 Transcriptional r 97.8 8.5E-05 1.8E-09 63.8 7.5 81 110-190 112-201 (480)
154 KOG4210 Nuclear localization s 97.8 2.4E-05 5.2E-10 67.7 4.2 82 110-192 182-264 (285)
155 KOG0115 RNA-binding protein p5 97.7 0.00011 2.5E-09 60.9 6.4 87 166-277 6-92 (275)
156 KOG4849 mRNA cleavage factor I 97.7 4E-05 8.6E-10 66.1 3.7 77 112-188 80-158 (498)
157 KOG0106 Alternative splicing f 97.6 5.2E-05 1.1E-09 62.2 3.1 74 109-190 96-169 (216)
158 PF08777 RRM_3: RNA binding mo 97.6 0.00029 6.3E-09 51.6 6.8 69 113-187 2-75 (105)
159 KOG1995 Conserved Zn-finger pr 97.4 0.00019 4E-09 62.4 4.2 66 214-279 65-138 (351)
160 KOG0129 Predicted RNA-binding 97.3 0.00062 1.3E-08 61.8 6.8 68 106-173 364-432 (520)
161 KOG3152 TBP-binding protein, a 97.2 0.00026 5.6E-09 58.8 2.6 65 216-280 75-151 (278)
162 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0014 3.1E-08 41.6 5.4 52 113-171 2-53 (53)
163 PF10309 DUF2414: Protein of u 97.1 0.0024 5.2E-08 41.7 6.4 55 215-277 5-62 (62)
164 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.0015 3.3E-08 41.5 4.8 52 216-274 2-53 (53)
165 KOG2314 Translation initiation 97.0 0.00074 1.6E-08 61.9 4.5 63 216-279 59-127 (698)
166 PF11608 Limkain-b1: Limkain b 97.0 0.0033 7.1E-08 43.4 6.3 54 216-279 3-61 (90)
167 KOG2202 U2 snRNP splicing fact 97.0 0.0004 8.7E-09 57.7 2.1 63 127-190 83-146 (260)
168 KOG1855 Predicted RNA-binding 96.9 0.00094 2E-08 59.3 4.0 65 214-278 230-307 (484)
169 KOG4849 mRNA cleavage factor I 96.8 0.0009 1.9E-08 57.9 2.9 62 216-277 81-144 (498)
170 PF05172 Nup35_RRM: Nup53/35/4 96.8 0.0045 9.9E-08 44.8 5.9 76 112-189 6-89 (100)
171 KOG1855 Predicted RNA-binding 96.7 0.0021 4.6E-08 57.2 4.6 77 110-186 229-318 (484)
172 KOG1996 mRNA splicing factor [ 96.6 0.0061 1.3E-07 51.7 6.4 63 126-188 300-363 (378)
173 KOG0112 Large RNA-binding prot 96.6 0.0059 1.3E-07 59.1 6.6 78 109-192 452-531 (975)
174 PF08952 DUF1866: Domain of un 96.5 0.0077 1.7E-07 46.3 5.6 74 108-190 23-105 (146)
175 KOG2416 Acinus (induces apopto 96.4 0.0036 7.8E-08 57.9 4.1 76 109-190 441-520 (718)
176 KOG0115 RNA-binding protein p5 96.3 0.015 3.2E-07 48.6 6.5 76 113-189 32-111 (275)
177 KOG2416 Acinus (induces apopto 96.2 0.0047 1E-07 57.1 3.9 64 211-280 440-504 (718)
178 COG5175 MOT2 Transcriptional r 96.1 0.012 2.6E-07 50.9 5.3 65 215-279 114-187 (480)
179 PF07576 BRAP2: BRCA1-associat 95.6 0.18 4E-06 37.1 9.4 68 111-180 12-80 (110)
180 PF10309 DUF2414: Protein of u 95.4 0.14 3.1E-06 33.4 7.2 55 112-174 5-62 (62)
181 PF05172 Nup35_RRM: Nup53/35/4 95.2 0.056 1.2E-06 39.1 5.4 62 216-279 7-75 (100)
182 KOG1996 mRNA splicing factor [ 95.2 0.043 9.3E-07 46.7 5.4 51 229-279 300-351 (378)
183 PF08675 RNA_bind: RNA binding 95.2 0.12 2.7E-06 35.7 6.7 55 112-175 9-63 (87)
184 PF15023 DUF4523: Protein of u 95.0 0.19 4.2E-06 38.4 7.7 73 109-189 83-159 (166)
185 PF03467 Smg4_UPF3: Smg-4/UPF3 94.9 0.025 5.5E-07 45.5 3.1 81 110-190 5-96 (176)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 94.5 0.055 1.2E-06 43.5 4.3 65 215-279 7-77 (176)
187 PF11767 SET_assoc: Histone ly 94.1 0.27 5.8E-06 32.6 6.1 55 123-186 11-65 (66)
188 KOG4676 Splicing factor, argin 94.0 0.069 1.5E-06 47.3 3.9 61 215-275 7-70 (479)
189 PF07576 BRAP2: BRCA1-associat 93.9 0.79 1.7E-05 33.8 8.9 63 216-280 14-77 (110)
190 KOG2591 c-Mpl binding protein, 93.7 0.36 7.7E-06 44.9 8.1 86 163-278 146-233 (684)
191 KOG2068 MOT2 transcription fac 93.6 0.029 6.4E-07 48.7 1.1 79 112-190 77-161 (327)
192 KOG0804 Cytoplasmic Zn-finger 93.6 0.57 1.2E-05 42.5 9.0 68 112-181 74-142 (493)
193 PF08675 RNA_bind: RNA binding 93.6 0.41 8.8E-06 33.2 6.3 54 216-278 10-63 (87)
194 KOG2193 IGF-II mRNA-binding pr 93.3 0.11 2.5E-06 46.5 4.1 58 216-279 2-59 (584)
195 KOG2318 Uncharacterized conser 93.1 0.87 1.9E-05 42.6 9.6 81 107-187 169-301 (650)
196 KOG2253 U1 snRNP complex, subu 93.0 0.08 1.7E-06 49.9 3.0 123 108-240 36-160 (668)
197 KOG2135 Proteins containing th 93.0 0.053 1.2E-06 49.1 1.7 73 112-191 372-445 (526)
198 KOG2202 U2 snRNP splicing fact 92.5 0.047 1E-06 45.7 0.7 49 230-279 83-132 (260)
199 KOG2591 c-Mpl binding protein, 92.4 0.37 7.9E-06 44.8 6.2 75 107-188 170-248 (684)
200 PF04847 Calcipressin: Calcipr 91.7 0.39 8.4E-06 38.9 5.1 60 125-190 8-69 (184)
201 PF08952 DUF1866: Domain of un 90.7 0.6 1.3E-05 36.0 4.9 59 213-280 25-92 (146)
202 KOG4285 Mitotic phosphoprotein 90.5 0.51 1.1E-05 40.6 4.8 69 114-190 199-268 (350)
203 KOG0804 Cytoplasmic Zn-finger 90.0 0.85 1.8E-05 41.4 6.0 63 215-279 74-137 (493)
204 PF15023 DUF4523: Protein of u 89.7 0.71 1.5E-05 35.4 4.5 59 213-278 84-146 (166)
205 KOG2068 MOT2 transcription fac 89.5 0.29 6.3E-06 42.7 2.7 64 216-280 78-148 (327)
206 PF03880 DbpA: DbpA RNA bindin 88.1 2.3 5E-05 28.8 5.9 58 123-189 12-74 (74)
207 PF07292 NID: Nmi/IFP 35 domai 88.1 0.5 1.1E-05 33.3 2.6 73 157-237 1-74 (88)
208 KOG4574 RNA-binding protein (c 83.2 0.84 1.8E-05 44.6 2.4 70 116-191 302-373 (1007)
209 KOG2253 U1 snRNP complex, subu 80.9 2 4.3E-05 41.0 3.9 58 212-278 37-94 (668)
210 COG5638 Uncharacterized conser 79.1 16 0.00035 33.0 8.7 43 105-147 139-186 (622)
211 PF10567 Nab6_mRNP_bdg: RNA-re 78.2 45 0.00097 29.0 11.8 165 113-278 16-212 (309)
212 KOG4574 RNA-binding protein (c 77.2 1.1 2.4E-05 43.9 1.0 57 217-279 300-356 (1007)
213 PF14111 DUF4283: Domain of un 75.2 4 8.6E-05 31.5 3.6 118 114-248 17-138 (153)
214 KOG4410 5-formyltetrahydrofola 72.9 26 0.00056 30.2 7.9 46 113-164 331-377 (396)
215 KOG4285 Mitotic phosphoprotein 72.9 6.1 0.00013 34.2 4.3 53 216-275 198-250 (350)
216 KOG4410 5-formyltetrahydrofola 72.1 27 0.00057 30.2 7.8 58 216-278 331-395 (396)
217 PF07530 PRE_C2HC: Associated 69.8 9.6 0.00021 25.4 3.9 61 127-190 2-63 (68)
218 PF03468 XS: XS domain; Inter 69.3 7.9 0.00017 28.8 3.8 56 114-172 10-75 (116)
219 smart00596 PRE_C2HC PRE_C2HC d 69.0 11 0.00023 25.2 3.9 61 127-190 2-63 (69)
220 KOG2318 Uncharacterized conser 67.6 21 0.00045 33.9 6.8 69 212-280 171-291 (650)
221 TIGR02542 B_forsyth_147 Bacter 67.4 9.2 0.0002 28.2 3.7 45 223-267 82-129 (145)
222 PF11767 SET_assoc: Histone ly 63.3 33 0.00071 22.7 5.4 46 226-280 11-56 (66)
223 PF02714 DUF221: Domain of unk 57.6 23 0.00051 31.1 5.4 55 157-236 1-55 (325)
224 KOG2295 C2H2 Zn-finger protein 55.6 1.8 4E-05 40.3 -2.0 66 214-279 230-295 (648)
225 KOG4365 Uncharacterized conser 49.0 5.7 0.00012 36.2 -0.0 76 114-190 5-80 (572)
226 PF15513 DUF4651: Domain of un 44.8 52 0.0011 21.4 3.9 18 127-144 9-26 (62)
227 KOG1295 Nonsense-mediated deca 42.7 24 0.00053 31.6 2.9 69 111-179 6-77 (376)
228 KOG2295 C2H2 Zn-finger protein 42.3 4.6 9.9E-05 37.8 -1.6 70 111-180 230-299 (648)
229 KOG4483 Uncharacterized conser 42.3 84 0.0018 28.6 6.1 56 214-276 390-446 (528)
230 PRK14548 50S ribosomal protein 41.9 1.2E+02 0.0026 21.1 6.1 55 116-173 24-80 (84)
231 KOG4483 Uncharacterized conser 39.6 1.1E+02 0.0024 27.9 6.4 58 109-173 388-446 (528)
232 COG5193 LHP1 La protein, small 38.9 17 0.00036 32.9 1.3 60 216-275 175-244 (438)
233 KOG2891 Surface glycoprotein [ 36.1 39 0.00084 29.0 3.0 72 108-179 145-247 (445)
234 PRK01178 rps24e 30S ribosomal 36.0 1.4E+02 0.0031 21.5 5.5 46 123-169 30-80 (99)
235 TIGR03636 L23_arch archaeal ri 34.5 1.5E+02 0.0033 20.2 6.1 56 115-173 16-73 (77)
236 PF03439 Spt5-NGN: Early trans 32.5 69 0.0015 22.1 3.4 24 153-176 43-66 (84)
237 PF10567 Nab6_mRNP_bdg: RNA-re 32.1 93 0.002 27.1 4.6 57 215-271 15-78 (309)
238 COG5193 LHP1 La protein, small 31.7 19 0.00041 32.5 0.5 63 110-172 172-244 (438)
239 PF03439 Spt5-NGN: Early trans 28.7 77 0.0017 21.9 3.1 25 255-279 42-66 (84)
240 KOG2135 Proteins containing th 28.7 20 0.00043 33.1 0.2 53 216-274 373-426 (526)
241 KOG2891 Surface glycoprotein [ 26.2 57 0.0012 28.1 2.4 35 214-248 148-194 (445)
242 PRK13259 regulatory protein Sp 25.8 1.1E+02 0.0024 21.8 3.5 25 242-266 3-27 (94)
243 PF11823 DUF3343: Protein of u 25.6 1.2E+02 0.0026 20.1 3.6 62 155-240 2-63 (73)
244 COG0275 Predicted S-adenosylme 24.3 2.1E+02 0.0046 25.2 5.6 80 165-244 83-162 (314)
245 KOG4019 Calcineurin-mediated s 23.1 78 0.0017 25.5 2.5 74 111-190 9-88 (193)
246 COG0030 KsgA Dimethyladenosine 22.9 1.1E+02 0.0023 26.3 3.5 34 112-145 95-128 (259)
247 KOG0156 Cytochrome P450 CYP2 s 22.5 1.8E+02 0.0038 27.5 5.2 67 108-184 28-97 (489)
248 PTZ00071 40S ribosomal protein 22.1 2.8E+02 0.0062 21.1 5.2 46 123-169 35-86 (132)
249 PF09707 Cas_Cas2CT1978: CRISP 21.7 2E+02 0.0043 20.1 4.0 47 112-161 25-71 (86)
250 PF04026 SpoVG: SpoVG; InterP 21.5 1.4E+02 0.003 20.7 3.3 25 242-266 3-27 (84)
251 PF08156 NOP5NT: NOP5NT (NUC12 20.6 34 0.00073 22.6 0.0 39 230-278 27-65 (67)
252 PRK11901 hypothetical protein; 20.2 2.8E+02 0.0061 24.6 5.5 57 219-277 246-304 (327)
253 PF11411 DNA_ligase_IV: DNA li 20.1 86 0.0019 18.0 1.6 16 122-137 19-34 (36)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.3e-33 Score=246.46 Aligned_cols=156 Identities=27% Similarity=0.465 Sum_probs=143.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
.....++|||+|||+++|+++|+++|+.||+|..|+|++|..+++++|||||+|.++++|.+|++.|+|..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
++..... .....+|||+|||+.+++++|+++|++||.|+.+++++++.+|++||||||+|.+.
T Consensus 183 ~a~p~~~-----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~ 245 (346)
T TIGR01659 183 YARPGGE-----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKR 245 (346)
T ss_pred ccccccc-----------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCH
Confidence 8753211 11245799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 023583 268 EDLQSALDAMNGV 280 (280)
Q Consensus 268 e~A~~Al~~lnG~ 280 (280)
++|.+||+.|||+
T Consensus 246 e~A~~Ai~~lng~ 258 (346)
T TIGR01659 246 EEAQEAISALNNV 258 (346)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999984
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.8e-32 Score=253.90 Aligned_cols=167 Identities=21% Similarity=0.414 Sum_probs=144.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
.....++|||+|||+++++++|+++|..||+|.+|++++|+.+|+++|||||+|.+.++|.+|++.|||..|+||.|+|.
T Consensus 103 a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~ 182 (612)
T TIGR01645 103 ALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 182 (612)
T ss_pred hhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeec
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
++......... ...........++|||+||+..+++++|+++|+.||.|..+++.+++.+|++||||||+|.+.
T Consensus 183 rp~~~p~a~~~------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~ 256 (612)
T TIGR01645 183 RPSNMPQAQPI------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNL 256 (612)
T ss_pred ccccccccccc------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCH
Confidence 65422111000 000111122347999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 023583 268 EDLQSALDAMNGV 280 (280)
Q Consensus 268 e~A~~Al~~lnG~ 280 (280)
++|.+|++.|||+
T Consensus 257 e~A~kAI~amNg~ 269 (612)
T TIGR01645 257 QSQSEAIASMNLF 269 (612)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999985
No 3
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=1.9e-32 Score=226.04 Aligned_cols=164 Identities=23% Similarity=0.350 Sum_probs=125.1
Q ss_pred ecCCCCCcccCccCCCCCCCCccCCCCCCcccccccccccccccccCCCCCcccCCCC--------------CCCccchh
Q 023583 25 TQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQ--------------DEPETEQE 90 (280)
Q Consensus 25 t~~~p~~l~~lf~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 90 (280)
|++||||||+||+||||++|++|+++.|+--... ....+++|.+.+.......... +..+....
T Consensus 2 ~~~lp~nllaLF~pRpPl~y~pP~d~~p~kr~~~--~~tGvA~~~~~~~~~~d~p~~~p~~t~~e~~er~~~~k~e~~~~ 79 (335)
T KOG0113|consen 2 TQFLPPNLLALFAPRPPLPYLPPTDKLPHKRKTN--PYTGVAQYLSTFEDPKDAPPKFPVETPEEPLERGRREKTEKIPH 79 (335)
T ss_pred CccCCccHHHhcCCCCCcccCCccccChhhccCC--CcccHHHHHHhhcCcccCCCcCcccchhhHHHhhhhhhhhhhHH
Confidence 6889999999999999999999999887632211 2223344444433222211110 01111111
Q ss_pred hhhhhhhhhcccCcccccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHH
Q 023583 91 EEEEEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (280)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a 170 (280)
..+......+...+..+..++++||||+.|+++++|.+|+.+|+.||+|+.|+||+|..||+++|||||+|+++.++..|
T Consensus 80 ~~~~~l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~A 159 (335)
T KOG0113|consen 80 KLERRLKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAA 159 (335)
T ss_pred HHHHHHHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHH
Confidence 12233344455566677889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcCCceeEEecCC
Q 023583 171 IRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 171 ~~~l~g~~i~g~~l~v~~a~ 190 (280)
++..+|..|+|+.|.|++-.
T Consensus 160 YK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 160 YKDADGIKIDGRRILVDVER 179 (335)
T ss_pred HHhccCceecCcEEEEEecc
Confidence 99999999999999999854
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=5.6e-31 Score=235.64 Aligned_cols=153 Identities=26% Similarity=0.520 Sum_probs=141.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+..+|||+|||+++++++|+++|+.||+|..|++++++.+|+++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHH
Q 023583 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (280)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A 270 (280)
.... ....++|||+|||..+++++|+++|+.||.|..++++.+..+|.++|||||+|.+.++|
T Consensus 82 ~~~~-----------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A 144 (352)
T TIGR01661 82 PSSD-----------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEA 144 (352)
T ss_pred cccc-----------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHH
Confidence 3221 11245899999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHhcCC
Q 023583 271 QSALDAMNGV 280 (280)
Q Consensus 271 ~~Al~~lnG~ 280 (280)
..|++.|||.
T Consensus 145 ~~ai~~l~g~ 154 (352)
T TIGR01661 145 DRAIKTLNGT 154 (352)
T ss_pred HHHHHHhCCC
Confidence 9999999984
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.2e-30 Score=212.86 Aligned_cols=166 Identities=29% Similarity=0.507 Sum_probs=145.7
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
......-|||+.|...++-++|++.|.+||+|.++++++|..|++++||+||.|.+.++|+.||..|+|.-|++|.|+-.
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 33446679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
|+..+.. +.......-...........++|||+|++..+++++|++.|+.||.|.+|+++++ +||+||+|.++
T Consensus 138 WATRKp~-e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tk 210 (321)
T KOG0148|consen 138 WATRKPS-EMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETK 210 (321)
T ss_pred ccccCcc-ccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecch
Confidence 9987762 1111112222233445567899999999999999999999999999999999987 69999999999
Q ss_pred HHHHHHHHHhcCC
Q 023583 268 EDLQSALDAMNGV 280 (280)
Q Consensus 268 e~A~~Al~~lnG~ 280 (280)
|.|..||..+||.
T Consensus 211 EaAahAIv~mNnt 223 (321)
T KOG0148|consen 211 EAAAHAIVQMNNT 223 (321)
T ss_pred hhHHHHHHHhcCc
Confidence 9999999999984
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.4e-29 Score=232.61 Aligned_cols=168 Identities=29% Similarity=0.481 Sum_probs=145.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+.+++++|+++|+.||.|..|+++.+..+|+++|||||+|.+.++|.+|+. |+|..+.|+.|.|
T Consensus 84 ~~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v 162 (457)
T TIGR01622 84 EAERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIV 162 (457)
T ss_pred ccccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEE
Confidence 344567899999999999999999999999999999999999999999999999999999999997 8999999999999
Q ss_pred ecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCC
Q 023583 187 NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266 (280)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~ 266 (280)
..+............ ..........+|||+|||..+++++|+++|+.||.|..|.++.+..+|.++|||||+|.+
T Consensus 163 ~~~~~~~~~~~~~~~-----~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~ 237 (457)
T TIGR01622 163 QSSQAEKNRAAKAAT-----HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHD 237 (457)
T ss_pred eecchhhhhhhhccc-----ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 876543222111000 001112236899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 023583 267 AEDLQSALDAMNGV 280 (280)
Q Consensus 267 ~e~A~~Al~~lnG~ 280 (280)
.++|..|++.|||+
T Consensus 238 ~e~A~~A~~~l~g~ 251 (457)
T TIGR01622 238 AEEAKEALEVMNGF 251 (457)
T ss_pred HHHHHHHHHhcCCc
Confidence 99999999999984
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=4.6e-29 Score=223.32 Aligned_cols=170 Identities=25% Similarity=0.425 Sum_probs=140.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC--ceeEEec
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNF 188 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g--~~l~v~~ 188 (280)
...+|||+|||+.+++++|+.+|+.||.|..+.++.+..++.++|||||+|.+.++|..|++.|+|..+.| ++|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998889999999999999999999999999999987 5688887
Q ss_pred CCCCCCCCcCCCCC-----------C-------------------------------------------------cc---
Q 023583 189 PEVPRGGERAAMGP-----------K-------------------------------------------------LQ--- 205 (280)
Q Consensus 189 a~~~~~~~~~~~~~-----------~-------------------------------------------------~~--- 205 (280)
+..+.......... . ..
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 65332110000000 0 00
Q ss_pred ------------CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHH
Q 023583 206 ------------NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273 (280)
Q Consensus 206 ------------~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~A 273 (280)
.........+.+|||+|||+.+++++|+++|++||.|.++++++|+.+|.+||||||+|.+.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00000011234699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 023583 274 LDAMNGV 280 (280)
Q Consensus 274 l~~lnG~ 280 (280)
+..|||.
T Consensus 328 i~~lnG~ 334 (352)
T TIGR01661 328 ILSLNGY 334 (352)
T ss_pred HHHhCCC
Confidence 9999995
No 8
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.2e-29 Score=218.82 Aligned_cols=153 Identities=28% Similarity=0.455 Sum_probs=139.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC-cC--CceeEEe
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IG--GRTVKVN 187 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-i~--g~~l~v~ 187 (280)
+.-++|||.+|..++|.||+.+|++||.|..|.+++|+.++.++|||||.|.+.++|.+|+..||... |. .+.|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 44579999999999999999999999999999999999999999999999999999999999998765 44 4789999
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
+++.++..- ...++|||+-|++.++|.+++++|++||.|++|+|++|. .|.+||||||+|.+.
T Consensus 113 ~Ad~E~er~----------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstk 175 (510)
T KOG0144|consen 113 YADGERERI----------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTK 175 (510)
T ss_pred ccchhhhcc----------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehH
Confidence 887543321 245789999999999999999999999999999999997 799999999999999
Q ss_pred HHHHHHHHHhcCC
Q 023583 268 EDLQSALDAMNGV 280 (280)
Q Consensus 268 e~A~~Al~~lnG~ 280 (280)
+-|..|+++|||.
T Consensus 176 e~A~~Aika~ng~ 188 (510)
T KOG0144|consen 176 EMAVAAIKALNGT 188 (510)
T ss_pred HHHHHHHHhhccc
Confidence 9999999999984
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=9.4e-29 Score=234.00 Aligned_cols=151 Identities=30% Similarity=0.551 Sum_probs=137.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCCC
Q 023583 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193 (280)
Q Consensus 114 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~ 193 (280)
+|||+|||+++||++|+++|+.||+|.+|++++|..+++++|||||+|.+.++|.+|+..+++..|.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999875322
Q ss_pred CCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHH
Q 023583 194 GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273 (280)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~A 273 (280)
... .....+|||+|||.++++++|+++|+.||.|..|++..+. +|+++|||||+|.+.++|.+|
T Consensus 82 ~~~---------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~A 145 (562)
T TIGR01628 82 SLR---------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAA 145 (562)
T ss_pred ccc---------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHH
Confidence 111 1123579999999999999999999999999999999885 788999999999999999999
Q ss_pred HHHhcCC
Q 023583 274 LDAMNGV 280 (280)
Q Consensus 274 l~~lnG~ 280 (280)
++.|||.
T Consensus 146 i~~lng~ 152 (562)
T TIGR01628 146 IQKVNGM 152 (562)
T ss_pred HHHhccc
Confidence 9999984
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.3e-28 Score=197.52 Aligned_cols=153 Identities=27% Similarity=0.529 Sum_probs=142.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..+.|.|.-||..+|+++|+.+|...|+|+++++++|+.+|.+.||+||.|.+++||.+|+..|||.++..+.|+|.++.
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHH
Q 023583 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (280)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A 270 (280)
.....- ....|||.+||..+|..+|.++|++||.|..-+|+.|..+|.+||.|||+|+...+|
T Consensus 120 PSs~~I-----------------k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 120 PSSDSI-----------------KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred CChhhh-----------------cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 433221 124799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 023583 271 QSALDAMNGV 280 (280)
Q Consensus 271 ~~Al~~lnG~ 280 (280)
..||..|||.
T Consensus 183 e~AIk~lNG~ 192 (360)
T KOG0145|consen 183 EEAIKGLNGQ 192 (360)
T ss_pred HHHHHhccCC
Confidence 9999999995
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.3e-26 Score=219.52 Aligned_cols=170 Identities=32% Similarity=0.481 Sum_probs=141.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC----Ccee
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG----GRTV 184 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~----g~~l 184 (280)
....++|||+|||+++|+++|+++|+.||.|..+.+.++. +|+++|||||+|.+.++|.+|++.++|..+. |+.+
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3456789999999999999999999999999999999886 7899999999999999999999999999999 9999
Q ss_pred EEecCCCCCCCCcCCCCC-CccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEE
Q 023583 185 KVNFPEVPRGGERAAMGP-KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263 (280)
Q Consensus 185 ~v~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~ 263 (280)
.|.++..+.......... ..............+|||+||++.+++++|+++|+.||.|.+|+++.| .+|.++|||||+
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~ 332 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVC 332 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEE
Confidence 998875433221100000 000000111234578999999999999999999999999999999999 589999999999
Q ss_pred eCCHHHHHHHHHHhcCC
Q 023583 264 FETAEDLQSALDAMNGV 280 (280)
Q Consensus 264 f~~~e~A~~Al~~lnG~ 280 (280)
|.+.++|.+|+..|||.
T Consensus 333 f~~~~~A~~A~~~~~g~ 349 (562)
T TIGR01628 333 FSNPEEANRAVTEMHGR 349 (562)
T ss_pred eCCHHHHHHHHHHhcCC
Confidence 99999999999999983
No 12
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=3.5e-27 Score=182.19 Aligned_cols=157 Identities=32% Similarity=0.542 Sum_probs=141.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
+.+...+||||||+..++++.|.++|-+.|+|.++++.+|+.+...+||||++|.++++|.-|++.|+...+.||+|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE-EEEeeeCCCCCCccEEEEEeCC
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFET 266 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~-~~i~~~~~~g~~kg~afV~f~~ 266 (280)
.+..... ..+.+.+|||+||...+++..|.+.|+.||.+.. -.+++++.+|.++|+|||.|.+
T Consensus 85 kas~~~~----------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~s 148 (203)
T KOG0131|consen 85 KASAHQK----------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYAS 148 (203)
T ss_pred ecccccc----------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechh
Confidence 7651110 0112368999999999999999999999999866 4889999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 023583 267 AEDLQSALDAMNGV 280 (280)
Q Consensus 267 ~e~A~~Al~~lnG~ 280 (280)
.+.+.+|+..|||+
T Consensus 149 feasd~ai~s~ngq 162 (203)
T KOG0131|consen 149 FEASDAAIGSMNGQ 162 (203)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999985
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.9e-26 Score=213.95 Aligned_cols=166 Identities=25% Similarity=0.402 Sum_probs=131.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHcc------------CCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEA------------GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~------------G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 175 (280)
.....++|||||||+.+|+++|+++|..+ +.|..+.+ ++.+|||||+|.+.++|..|+. |+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-LD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-CC
Confidence 34457899999999999999999999975 23344433 4568999999999999999996 99
Q ss_pred CCCcCCceeEEecCCCCCCCCcCCCC-----CC---c----cCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCce
Q 023583 176 GSQIGGRTVKVNFPEVPRGGERAAMG-----PK---L----QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL 243 (280)
Q Consensus 176 g~~i~g~~l~v~~a~~~~~~~~~~~~-----~~---~----~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~ 243 (280)
|..+.|+.|.|..+............ .. . ...........++|||+|||+.+++++|+++|+.||.|.
T Consensus 244 g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~ 323 (509)
T TIGR01642 244 SIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLK 323 (509)
T ss_pred CeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCee
Confidence 99999999999865433211100000 00 0 001111234568999999999999999999999999999
Q ss_pred EEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 244 SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 244 ~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++++..+|.++|||||+|.+.++|..|++.|||+
T Consensus 324 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~ 360 (509)
T TIGR01642 324 AFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGK 360 (509)
T ss_pred EEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999985
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=2.1e-25 Score=206.83 Aligned_cols=164 Identities=16% Similarity=0.230 Sum_probs=132.5
Q ss_pred CCCCeEEEeCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 110 DEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
.+..+|||+||++ .+|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|..|++.|||..|.|+.|.|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4668999999998 69999999999999999999998874 79999999999999999999999999999999998
Q ss_pred CCCCCCCCcCCC----C--------C--------CccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCC--ceEEE
Q 023583 189 PEVPRGGERAAM----G--------P--------KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG--LLSAK 246 (280)
Q Consensus 189 a~~~~~~~~~~~----~--------~--------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--v~~~~ 246 (280)
++.......... + . ...........+..+|||+|||..+++++|+++|+.||. +..++
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 764321111000 0 0 000001112345679999999999999999999999998 78887
Q ss_pred EeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 247 VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 247 i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.... +..+|+|||+|.+.++|..||..|||.
T Consensus 428 ~~~~~--~~~~~~gfVeF~~~e~A~~Al~~ln~~ 459 (481)
T TIGR01649 428 FFPKD--NERSKMGLLEWESVEDAVEALIALNHH 459 (481)
T ss_pred EecCC--CCcceeEEEEcCCHHHHHHHHHHhcCC
Confidence 76443 335899999999999999999999984
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.6e-25 Score=198.31 Aligned_cols=166 Identities=25% Similarity=0.426 Sum_probs=136.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+.-+|.|+|||+.+.+.+|+.+|+.||.|..|.|++.. .|+-.|||||+|....+|..|++.+||..|+||+|-|+|+.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 46689999999999999999999999999999999776 55555999999999999999999999999999999999974
Q ss_pred CCCCCCc------------------------------------CCCCC---------------------CccCC------
Q 023583 191 VPRGGER------------------------------------AAMGP---------------------KLQNS------ 207 (280)
Q Consensus 191 ~~~~~~~------------------------------------~~~~~---------------------~~~~~------ 207 (280)
.+..-+. ..... .....
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 2110000 00000 00000
Q ss_pred ----------CCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 208 ----------YQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 208 ----------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
.+.......+|||+|||+++++++|.+.|++||.|.++.++.++.||.++|.|||.|.+...|+.||.+.
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0111122378999999999999999999999999999999999999999999999999999999999865
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=1.7e-25 Score=207.47 Aligned_cols=155 Identities=18% Similarity=0.174 Sum_probs=128.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh--hCCCcCCceeEEec
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF--DGSQIGGRTVKVNF 188 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~i~g~~l~v~~ 188 (280)
++++|||+|||+++++++|+++|+.||.|.++.++++ +|||||+|.+.++|.+|++.+ ++..++|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4689999999999999999999999999999999853 689999999999999999864 78899999999999
Q ss_pred CCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHH
Q 023583 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (280)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e 268 (280)
+............ ..........+|+|+||++.+++++|+++|+.||.|..|.++++. .+|+|||+|.+.+
T Consensus 75 s~~~~~~~~~~~~-----~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~ 145 (481)
T TIGR01649 75 STSQEIKRDGNSD-----FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVN 145 (481)
T ss_pred cCCcccccCCCCc-----ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHH
Confidence 8654322111000 000011123579999999999999999999999999999988654 2479999999999
Q ss_pred HHHHHHHHhcCC
Q 023583 269 DLQSALDAMNGV 280 (280)
Q Consensus 269 ~A~~Al~~lnG~ 280 (280)
+|.+|++.|||.
T Consensus 146 ~A~~A~~~Lng~ 157 (481)
T TIGR01649 146 SAQHAKAALNGA 157 (481)
T ss_pred HHHHHHHHhcCC
Confidence 999999999995
No 17
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=7.6e-26 Score=196.16 Aligned_cols=163 Identities=23% Similarity=0.375 Sum_probs=131.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC-CceeEEec
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~-g~~l~v~~ 188 (280)
...+.||||.||.++.|++|.-+|++.|+|-.+++++|+.+|.+||||||.|.+.+.|+.|++.||+..|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999885 88888866
Q ss_pred CCCCC---------C---------------------------CCcCCCC------------------------------C
Q 023583 189 PEVPR---------G---------------------------GERAAMG------------------------------P 202 (280)
Q Consensus 189 a~~~~---------~---------------------------~~~~~~~------------------------------~ 202 (280)
+.... . .....++ .
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 43000 0 0000000 0
Q ss_pred Cc------cCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023583 203 KL------QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (280)
Q Consensus 203 ~~------~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ 276 (280)
.. ...........+.|||+||+.++|++.|+++|++||.|++|+.++| ||||.|.+.++|.+|++.
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 00 0000001122368999999999999999999999999999998855 999999999999999999
Q ss_pred hcCC
Q 023583 277 MNGV 280 (280)
Q Consensus 277 lnG~ 280 (280)
+||.
T Consensus 313 ~ngk 316 (506)
T KOG0117|consen 313 TNGK 316 (506)
T ss_pred hcCc
Confidence 9983
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.5e-25 Score=207.53 Aligned_cols=171 Identities=19% Similarity=0.270 Sum_probs=137.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
...++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCCCCCCcCCCCC-------Ccc----CCCCCCCCCCCeEEEcCCCCCC----------CHHHHHHHhccCCCceEEEEe
Q 023583 190 EVPRGGERAAMGP-------KLQ----NSYQGFVDSPHKIYAGNLGWGL----------TSQGLRDAFQGQPGLLSAKVI 248 (280)
Q Consensus 190 ~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~l~V~nLp~~~----------t~~~l~~~F~~~g~v~~~~i~ 248 (280)
............. ... ........+..+|+|.|+.... ..++|+++|++||.|..|.|+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 6432211100000 000 0001112356789999996421 236899999999999999998
Q ss_pred eeC---CCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 249 FER---YTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 249 ~~~---~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++. .++.++|+|||+|.+.++|.+|+.+|||.
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 753 34567899999999999999999999983
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=1.9e-25 Score=207.00 Aligned_cols=145 Identities=23% Similarity=0.460 Sum_probs=125.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC-CceeEEec
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~-g~~l~v~~ 188 (280)
...++|||+|||++++|++|+++|++||.|..++|++| .+|+++|||||+|.+.++|.+|++.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34589999999999999999999999999999999999 69999999999999999999999999999885 77777764
Q ss_pred CCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCC-ceEEEEe-eeCCCCCCccEEEEEeCC
Q 023583 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVI-FERYTGRSRGFGFVTFET 266 (280)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~-v~~~~i~-~~~~~g~~kg~afV~f~~ 266 (280)
+. ..++|||+|||+.+++++|.+.|++++. +..+.+. .....++++|||||+|.+
T Consensus 135 S~-----------------------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s 191 (578)
T TIGR01648 135 SV-----------------------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYES 191 (578)
T ss_pred cc-----------------------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCC
Confidence 32 2478999999999999999999999864 4444433 233457889999999999
Q ss_pred HHHHHHHHHHhc
Q 023583 267 AEDLQSALDAMN 278 (280)
Q Consensus 267 ~e~A~~Al~~ln 278 (280)
.++|..|++.|+
T Consensus 192 ~edAa~AirkL~ 203 (578)
T TIGR01648 192 HRAAAMARRKLM 203 (578)
T ss_pred HHHHHHHHHHhh
Confidence 999999998875
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.3e-25 Score=197.31 Aligned_cols=168 Identities=26% Similarity=0.422 Sum_probs=141.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 191 (280)
..||||++||++++.++|.++|+.+|+|..+.++.+..++.+|||+||.|.-++|++.|++...+..++||.|+|+++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 37999999999999999999999999999999999998889999999999999999999999999999999999999875
Q ss_pred CCCCCcCCCCCCcc---------CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEE
Q 023583 192 PRGGERAAMGPKLQ---------NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262 (280)
Q Consensus 192 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV 262 (280)
.........+.... ........+..+|.|+||||.+.+.+|+.+|+.||.|..|.|++.+ .|+..|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEE
Confidence 43333111111000 0011112336799999999999999999999999999999999777 4555599999
Q ss_pred EeCCHHHHHHHHHHhcCC
Q 023583 263 TFETAEDLQSALDAMNGV 280 (280)
Q Consensus 263 ~f~~~e~A~~Al~~lnG~ 280 (280)
.|....+|..|++.+||.
T Consensus 164 ~fk~~~dA~~Al~~~N~~ 181 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGN 181 (678)
T ss_pred EEeeHHHHHHHHHhccCc
Confidence 999999999999999983
No 21
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.5e-25 Score=188.59 Aligned_cols=161 Identities=21% Similarity=0.453 Sum_probs=139.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 191 (280)
-++||||.+.+...|+.|+..|..||+|++|.+-.|..|++++|||||+|+-.+.|..|++.|||..++||.|+|.++..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999986431
Q ss_pred CCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHH
Q 023583 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271 (280)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~ 271 (280)
-..... .. .........-++|||..+..+++++||+.+|+.||.|++|.+-+++..+.+||||||+|.+..+..
T Consensus 193 mpQAQp-iI-----D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 193 MPQAQP-II-----DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred Ccccch-HH-----HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 110000 00 000000112368999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHhc
Q 023583 272 SALDAMN 278 (280)
Q Consensus 272 ~Al~~ln 278 (280)
.|+..||
T Consensus 267 eAiasMN 273 (544)
T KOG0124|consen 267 EAIASMN 273 (544)
T ss_pred HHhhhcc
Confidence 9999887
No 22
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=1.3e-23 Score=170.93 Aligned_cols=170 Identities=30% Similarity=0.458 Sum_probs=141.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC--ceeEEec
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNF 188 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g--~~l~v~~ 188 (280)
....|||.+||+.+|..+|..+|++||.|..-+|+.|..+|.+||.+||.|....+|+.|++.|||..-.| .+|.|.+
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999999998776 5788988
Q ss_pred CCCCCCCCcC-------------CCCC---Cc------------------------------cCCCCCCCCCCCeEEEcC
Q 023583 189 PEVPRGGERA-------------AMGP---KL------------------------------QNSYQGFVDSPHKIYAGN 222 (280)
Q Consensus 189 a~~~~~~~~~-------------~~~~---~~------------------------------~~~~~~~~~~~~~l~V~n 222 (280)
+..+...... -.++ .. .....+......+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 7533211100 0000 00 000011122346999999
Q ss_pred CCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 223 LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 223 Lp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
|..+.++.-|+++|..||.|..+++++|..++++||||||.+.+.++|..|+..|||.
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy 343 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY 343 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999995
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.91 E-value=2e-23 Score=193.52 Aligned_cols=153 Identities=26% Similarity=0.371 Sum_probs=124.7
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCC-eeEEEEe-ecCCCCCceeEEEEEECCHHHHHHHHHHhhC--CCcCCce
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIV-YDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG--SQIGGRT 183 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~-~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~i~g~~ 183 (280)
.....++|||+|||+++++++|.++|.+++. +..+.+. .....++++|||||+|.+.++|..|++.|+. ..++|+.
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 3445789999999999999999999999864 3333332 3334578899999999999999999988764 4678999
Q ss_pred eEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccC--CCceEEEEeeeCCCCCCccEEE
Q 023583 184 VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQ--PGLLSAKVIFERYTGRSRGFGF 261 (280)
Q Consensus 184 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~~i~~~~~~g~~kg~af 261 (280)
|.|+++........ ......++|||+||++.+++++|+++|+.| |.|++|.++ ++|||
T Consensus 214 I~VdwA~p~~~~d~------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAF 273 (578)
T TIGR01648 214 IAVDWAEPEEEVDE------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAF 273 (578)
T ss_pred EEEEeecccccccc------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEE
Confidence 99999864432111 112234789999999999999999999999 999999875 56999
Q ss_pred EEeCCHHHHHHHHHHhcCC
Q 023583 262 VTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 262 V~f~~~e~A~~Al~~lnG~ 280 (280)
|+|.+.++|.+|++.|||.
T Consensus 274 VeF~s~e~A~kAi~~lnG~ 292 (578)
T TIGR01648 274 VHFEDREDAVKAMDELNGK 292 (578)
T ss_pred EEeCCHHHHHHHHHHhCCC
Confidence 9999999999999999984
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=8.8e-23 Score=188.86 Aligned_cols=164 Identities=27% Similarity=0.393 Sum_probs=131.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 191 (280)
.++|||+|||+.+++++|+++|+.||.|..|.++.+..+|+++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999998999999999999999999999999999999999999999542
Q ss_pred CCCCCcC---------------C----------------C---CC---Cc----------------c-------------
Q 023583 192 PRGGERA---------------A----------------M---GP---KL----------------Q------------- 205 (280)
Q Consensus 192 ~~~~~~~---------------~----------------~---~~---~~----------------~------------- 205 (280)
....... . . .. .. .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 1100000 0 0 00 00 0
Q ss_pred ----C-C--CCCCCCCCCeEEEcCCCCCCC----------HHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHH
Q 023583 206 ----N-S--YQGFVDSPHKIYAGNLGWGLT----------SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (280)
Q Consensus 206 ----~-~--~~~~~~~~~~l~V~nLp~~~t----------~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e 268 (280)
. . .........+|+|.||....+ .+||++.|++||.|+.+.+. .+...|++||+|.+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~----~~~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVD----TKNSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEe----CCCCceeEEEEECCHH
Confidence 0 0 000113457899999954433 36899999999999999986 3456799999999999
Q ss_pred HHHHHHHHhcC
Q 023583 269 DLQSALDAMNG 279 (280)
Q Consensus 269 ~A~~Al~~lnG 279 (280)
+|..|++.|||
T Consensus 422 ~A~~A~~~lnG 432 (457)
T TIGR01622 422 AALAAFQALNG 432 (457)
T ss_pred HHHHHHHHhcC
Confidence 99999999998
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=8e-23 Score=181.54 Aligned_cols=136 Identities=29% Similarity=0.530 Sum_probs=127.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCCC
Q 023583 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPR 193 (280)
Q Consensus 114 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~ 193 (280)
.|||| +++||..|.+.|+.+|+|.++++.+|. + +.|||||.|.+..+|.+|+..+|...+.|++|++.|+....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58998 999999999999999999999999998 6 99999999999999999999999999999999999976322
Q ss_pred CCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHH
Q 023583 194 GGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSA 273 (280)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~A 273 (280)
. .+||.||+..++..+|.++|+.||.|+.|++..+. .| ++|| ||+|.+.++|.+|
T Consensus 77 ~----------------------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 77 S----------------------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKA 131 (369)
T ss_pred c----------------------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHH
Confidence 1 29999999999999999999999999999999986 44 8999 9999999999999
Q ss_pred HHHhcCC
Q 023583 274 LDAMNGV 280 (280)
Q Consensus 274 l~~lnG~ 280 (280)
++.|||.
T Consensus 132 i~~~ng~ 138 (369)
T KOG0123|consen 132 IEKLNGM 138 (369)
T ss_pred HHHhcCc
Confidence 9999995
No 26
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=4.6e-23 Score=170.11 Aligned_cols=133 Identities=28% Similarity=0.538 Sum_probs=122.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 192 (280)
-+|||||||..+++.+|+.+|++||.|..+.|+ +.||||-.++...+..|++.|+|..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv--------KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV--------KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee--------cccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 369999999999999999999999999999999 679999999999999999999999999999999987643
Q ss_pred CCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHH
Q 023583 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (280)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~ 272 (280)
.....+|+|+|+...++.++|+..|++||.|.+|.|+ |+|+||.|.-.++|..
T Consensus 75 -------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~ 127 (346)
T KOG0109|consen 75 -------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVE 127 (346)
T ss_pred -------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHH
Confidence 1134689999999999999999999999999999998 5599999999999999
Q ss_pred HHHHhcCC
Q 023583 273 ALDAMNGV 280 (280)
Q Consensus 273 Al~~lnG~ 280 (280)
|++.|||.
T Consensus 128 air~l~~~ 135 (346)
T KOG0109|consen 128 AIRGLDNT 135 (346)
T ss_pred HHhccccc
Confidence 99999984
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=5.4e-22 Score=181.06 Aligned_cols=158 Identities=30% Similarity=0.465 Sum_probs=132.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCC---CCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCC
Q 023583 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (280)
Q Consensus 115 l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 191 (280)
|||.||+++++.++|...|..+|.|..+.|...+.. -.+.|||||+|.+.++|+.|++.|+|..++||.|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 999999999999999999999999999988654422 13669999999999999999999999999999999999872
Q ss_pred CCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHH
Q 023583 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271 (280)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~ 271 (280)
...... +.. .......++|.|+|+|+..+..+++.+|..||.+..|+|+.....+.++|||||.|.++.+|.
T Consensus 598 k~~~~~---gK~-----~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~ 669 (725)
T KOG0110|consen 598 KPASTV---GKK-----KSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAK 669 (725)
T ss_pred cccccc---ccc-----cccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHH
Confidence 221111 111 111122579999999999999999999999999999999987666778999999999999999
Q ss_pred HHHHHhcCC
Q 023583 272 SALDAMNGV 280 (280)
Q Consensus 272 ~Al~~lnG~ 280 (280)
.|+++|.++
T Consensus 670 nA~~al~ST 678 (725)
T KOG0110|consen 670 NAFDALGST 678 (725)
T ss_pred HHHHhhccc
Confidence 999998753
No 28
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2.4e-21 Score=158.27 Aligned_cols=172 Identities=27% Similarity=0.410 Sum_probs=140.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCc-CC--cee
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI-GG--RTV 184 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i-~g--~~l 184 (280)
...+.++||||.|.+.-.|+|++.+|..||.|.++.+.+.. .|.++|+|||.|.+.-+|..||..|||..- .| ..|
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccce
Confidence 34467899999999999999999999999999999999887 899999999999999999999999999764 34 678
Q ss_pred EEecCCCCCCC---------------------------------------------------------------------
Q 023583 185 KVNFPEVPRGG--------------------------------------------------------------------- 195 (280)
Q Consensus 185 ~v~~a~~~~~~--------------------------------------------------------------------- 195 (280)
.|.+++..+.+
T Consensus 94 VVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~ang 173 (371)
T KOG0146|consen 94 VVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANG 173 (371)
T ss_pred EEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcc
Confidence 88876500000
Q ss_pred -----------C--c------------CCCCC------------------------------------------------
Q 023583 196 -----------E--R------------AAMGP------------------------------------------------ 202 (280)
Q Consensus 196 -----------~--~------------~~~~~------------------------------------------------ 202 (280)
. . ...+.
T Consensus 174 l~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y 253 (371)
T KOG0146|consen 174 LAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQY 253 (371)
T ss_pred cccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHH
Confidence 0 0 00000
Q ss_pred -------------------CccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEE
Q 023583 203 -------------------KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263 (280)
Q Consensus 203 -------------------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~ 263 (280)
.............|.|||-.||.+..+.+|.+.|-.||.|+..+++.|+.|+.+|.||||.
T Consensus 254 ~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 254 AAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEe
Confidence 0000001112356899999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhcCC
Q 023583 264 FETAEDLQSALDAMNGV 280 (280)
Q Consensus 264 f~~~e~A~~Al~~lnG~ 280 (280)
|+++.+|+.||.+|||+
T Consensus 334 fDNp~SaQaAIqAMNGF 350 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGF 350 (371)
T ss_pred cCCchhHHHHHHHhcch
Confidence 99999999999999996
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=1.7e-22 Score=179.87 Aligned_cols=173 Identities=28% Similarity=0.474 Sum_probs=147.6
Q ss_pred cccccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce
Q 023583 104 PKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (280)
Q Consensus 104 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 183 (280)
....+.++.++||+-.|+-..++-+|.++|+.+|.|..|+++.|+.+++++|.|||+|.+.+.+..|+. |.|..+.|.+
T Consensus 171 ~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~p 249 (549)
T KOG0147|consen 171 ILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVP 249 (549)
T ss_pred cCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCce
Confidence 334455667899999999999999999999999999999999999999999999999999999999996 8999999999
Q ss_pred eEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEE
Q 023583 184 VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263 (280)
Q Consensus 184 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~ 263 (280)
|.|..+...++... ....... ......+..+|||+||.+.+++++|+.+|+.||.|..|.+.+|..+|.+||||||+
T Consensus 250 v~vq~sEaeknr~a-~~s~a~~--~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAA-NASPALQ--GKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred eEecccHHHHHHHH-hcccccc--ccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEE
Confidence 99998765444311 1111111 11222333449999999999999999999999999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhcCC
Q 023583 264 FETAEDLQSALDAMNGV 280 (280)
Q Consensus 264 f~~~e~A~~Al~~lnG~ 280 (280)
|.+.++|..|++.|||+
T Consensus 327 f~~~~~ar~a~e~lngf 343 (549)
T KOG0147|consen 327 FVNKEDARKALEQLNGF 343 (549)
T ss_pred EecHHHHHHHHHHhccc
Confidence 99999999999999995
No 30
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.7e-20 Score=143.63 Aligned_cols=160 Identities=23% Similarity=0.310 Sum_probs=130.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
...++|||||||.++.+.+|.++|-+||.|..|.+.... ....||||+|++..+|..|+..-+|..++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999999985432 34689999999999999999999999999999999998
Q ss_pred CCCCCCCcCCCC---------CCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEE
Q 023583 190 EVPRGGERAAMG---------PKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFG 260 (280)
Q Consensus 190 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~a 260 (280)
............ ............+..+|.|.+||..-+++||++...+-|.|....+.+| |++
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 754422211110 0001111222345678999999999999999999999999999998877 489
Q ss_pred EEEeCCHHHHHHHHHHhcC
Q 023583 261 FVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 261 fV~f~~~e~A~~Al~~lnG 279 (280)
.|+|...|+..-|+..|+.
T Consensus 154 vV~~~r~eDMkYAvr~ld~ 172 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLDD 172 (241)
T ss_pred eeeeeehhhHHHHHHhhcc
Confidence 9999999999999999874
No 31
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=4.6e-21 Score=164.88 Aligned_cols=153 Identities=28% Similarity=0.508 Sum_probs=135.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+.++||||+|+++++++.|+.+|..||+|..+.+.+|+.+++++||+||+|.+.+....++.. ....|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 778999999999999999999999999999999999999999999999999999999999874 7788999999998776
Q ss_pred CCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHH
Q 023583 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (280)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A 270 (280)
.......... .....+|||++||..+++++++++|.+||.|..+.++.|..+.+.+|||||.|.+.+++
T Consensus 84 ~r~~~~~~~~-----------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sV 152 (311)
T KOG4205|consen 84 SREDQTKVGR-----------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSV 152 (311)
T ss_pred Cccccccccc-----------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccc
Confidence 4433222211 11457999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 023583 271 QSALD 275 (280)
Q Consensus 271 ~~Al~ 275 (280)
.+++.
T Consensus 153 dkv~~ 157 (311)
T KOG4205|consen 153 DKVTL 157 (311)
T ss_pred ceecc
Confidence 88764
No 32
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=1.3e-20 Score=163.22 Aligned_cols=80 Identities=31% Similarity=0.532 Sum_probs=74.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC-cCC--ceeEE
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IGG--RTVKV 186 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-i~g--~~l~v 186 (280)
.+.++||||.|++.+||.+++++|.+||.|++|+|.+|. .+.+||||||.|.+.+.|..|++.|||.. +.| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 457899999999999999999999999999999999998 89999999999999999999999999975 555 68999
Q ss_pred ecCC
Q 023583 187 NFPE 190 (280)
Q Consensus 187 ~~a~ 190 (280)
++++
T Consensus 201 kFAD 204 (510)
T KOG0144|consen 201 KFAD 204 (510)
T ss_pred Eecc
Confidence 9986
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.1e-19 Score=161.53 Aligned_cols=153 Identities=31% Similarity=0.527 Sum_probs=133.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCCCC
Q 023583 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRG 194 (280)
Q Consensus 115 l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~ 194 (280)
|||.||+.+++...|.+.|+.||.|.+|++..+. .| ++|| ||+|.+++.|++|++.+||..+.|++|.|.....+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999997 45 9999 9999999999999999999999999999987664433
Q ss_pred CCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHH
Q 023583 195 GERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274 (280)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al 274 (280)
....... ....-..++|.|++...+++.|..+|..+|.|..+.++.+. .|.++|||||.|.+++.|..|+
T Consensus 156 r~~~~~~---------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~-~g~~~~~gfv~f~~~e~a~~av 225 (369)
T KOG0123|consen 156 REAPLGE---------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDS-IGKSKGFGFVNFENPEDAKKAV 225 (369)
T ss_pred hcccccc---------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecC-CCCCCCccceeecChhHHHHHH
Confidence 2222111 11123568999999999999999999999999999999887 6779999999999999999999
Q ss_pred HHhcCC
Q 023583 275 DAMNGV 280 (280)
Q Consensus 275 ~~lnG~ 280 (280)
+.|||.
T Consensus 226 ~~l~~~ 231 (369)
T KOG0123|consen 226 ETLNGK 231 (369)
T ss_pred HhccCC
Confidence 999984
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=9.1e-20 Score=149.34 Aligned_cols=125 Identities=34% Similarity=0.634 Sum_probs=107.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
+++.+|||||||..++||+-|..+|.+.|+|..++++.+ .+.|.+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 467899999999999999999999999999999999866 455666
Q ss_pred CCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHH
Q 023583 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (280)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e 268 (280)
+..+....... ......+||+-|...++.++|++.|.+||+|.+++|++|..|+++||||||.|-+.+
T Consensus 48 a~~p~nQsk~t------------~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~ 115 (321)
T KOG0148|consen 48 ATAPGNQSKPT------------SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE 115 (321)
T ss_pred ccCcccCCCCc------------cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH
Confidence 55442211111 112457999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 023583 269 DLQSALDAMNGV 280 (280)
Q Consensus 269 ~A~~Al~~lnG~ 280 (280)
+|+.||+.|||+
T Consensus 116 dAEnAI~~MnGq 127 (321)
T KOG0148|consen 116 DAENAIQQMNGQ 127 (321)
T ss_pred HHHHHHHHhCCe
Confidence 999999999995
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.80 E-value=3.1e-18 Score=159.49 Aligned_cols=81 Identities=19% Similarity=0.412 Sum_probs=76.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
...++|||+|||+++++++|+++|+.||.|.++++.++..+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999999999875
Q ss_pred C
Q 023583 190 E 190 (280)
Q Consensus 190 ~ 190 (280)
.
T Consensus 282 i 282 (612)
T TIGR01645 282 V 282 (612)
T ss_pred C
Confidence 4
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=7.1e-18 Score=135.63 Aligned_cols=164 Identities=23% Similarity=0.359 Sum_probs=132.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHH----HHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAE----VFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~----~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
..+..||||.||+..+..++|++ +|++||.|..|.... +.+.||.|||.|++.+.|..|++.|+|..+.|+.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 34556999999999999999988 999999999888763 57889999999999999999999999999999999
Q ss_pred EEecCCCCCCCCcCCC-------------------CCC----------ccCCC----CCCCCCCCeEEEcCCCCCCCHHH
Q 023583 185 KVNFPEVPRGGERAAM-------------------GPK----------LQNSY----QGFVDSPHKIYAGNLGWGLTSQG 231 (280)
Q Consensus 185 ~v~~a~~~~~~~~~~~-------------------~~~----------~~~~~----~~~~~~~~~l~V~nLp~~~t~~~ 231 (280)
+|.++..+...-.... .+. ..... .....+...+++.|||..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 9999863321111100 000 00000 12245668899999999999999
Q ss_pred HHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 232 l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+..+|.+|.+...++.+... +|.|||+|.+...|..|..+++|+
T Consensus 163 l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~ 206 (221)
T KOG4206|consen 163 LSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGF 206 (221)
T ss_pred HHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccc
Confidence 99999999999999987543 689999999999999999999874
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=6.3e-18 Score=131.55 Aligned_cols=86 Identities=35% Similarity=0.599 Sum_probs=80.5
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
.....++|||+|||+++++++|+++|++||.|..+.++.|..+++++|||||+|.+.++|++|++.|++..|+|+.|+|.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023583 188 FPEVPR 193 (280)
Q Consensus 188 ~a~~~~ 193 (280)
++....
T Consensus 110 ~a~~~~ 115 (144)
T PLN03134 110 PANDRP 115 (144)
T ss_pred eCCcCC
Confidence 987543
No 38
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.75 E-value=6.5e-17 Score=142.69 Aligned_cols=159 Identities=21% Similarity=0.282 Sum_probs=123.7
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
.......|.+++|||++|+++|.++|+.++ |+++.+.+. +|++.|-|||+|.+++++++|++. +...+..|-|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 344556789999999999999999999995 887666554 699999999999999999999995 8899999999998
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
.+........... ...........|.+++||+.|+++||.++|+.--.|....++.....+++.|.|||+|.+.
T Consensus 82 ~~~~~e~d~~~~~------~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sq 155 (510)
T KOG4211|consen 82 TAGGAEADWVMRP------GGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQ 155 (510)
T ss_pred ccCCccccccccC------CCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCH
Confidence 7653332111100 0001113456899999999999999999999775554433344444788999999999999
Q ss_pred HHHHHHHHH
Q 023583 268 EDLQSALDA 276 (280)
Q Consensus 268 e~A~~Al~~ 276 (280)
+.|+.||..
T Consensus 156 e~ae~Al~r 164 (510)
T KOG4211|consen 156 ESAEIALGR 164 (510)
T ss_pred HHHHHHHHH
Confidence 999999974
No 39
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.74 E-value=1.3e-16 Score=138.74 Aligned_cols=167 Identities=19% Similarity=0.386 Sum_probs=134.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHc-cCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
-.+.+||.||||++...+|+++|.. .|+|+.|.++.|. .|++||+|.|+|++++.+++|++.|+...+.||.|.|.-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3556999999999999999999975 8999999999998 8999999999999999999999999999999999999643
Q ss_pred CCCC---------------------------------------------CCCcCCCC--CCccC----------------
Q 023583 190 EVPR---------------------------------------------GGERAAMG--PKLQN---------------- 206 (280)
Q Consensus 190 ~~~~---------------------------------------------~~~~~~~~--~~~~~---------------- 206 (280)
.... ...+.... .....
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 2100 00000000 00000
Q ss_pred ----CCCC-CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 207 ----SYQG-FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 207 ----~~~~-~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
.... ..+...++||.||.+.+..+.|++.|.-.|.|..+.+-.|+ .|.++|+|.++|..+-+|.+||..|++
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhcc
Confidence 0000 11223689999999999999999999999999999998888 579999999999999999999999885
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.72 E-value=3.5e-17 Score=146.17 Aligned_cols=165 Identities=25% Similarity=0.384 Sum_probs=124.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+...||||||.+++++.+|+..|+.||.|..|.+.+|..+|.++||+||+|.+.++|++|+..|||..|.||.|+|..-
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999998543
Q ss_pred CCCCCCCcC------------------CCC---------------------------------------CCccC-----C
Q 023583 190 EVPRGGERA------------------AMG---------------------------------------PKLQN-----S 207 (280)
Q Consensus 190 ~~~~~~~~~------------------~~~---------------------------------------~~~~~-----~ 207 (280)
......... ..+ ..... .
T Consensus 356 ~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (549)
T KOG0147|consen 356 TERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADA 435 (549)
T ss_pred eeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccc
Confidence 210000000 000 00000 0
Q ss_pred CCCCCCCCCeEEEcCCCCCC--C--------HHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 208 YQGFVDSPHKIYAGNLGWGL--T--------SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 208 ~~~~~~~~~~l~V~nLp~~~--t--------~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
.+....++.++.+.|+-... | .+|+.+.+.+||.|..|.+-+. +-|+.||.|.+.+.|..|+.+|
T Consensus 436 ~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~al 510 (549)
T KOG0147|consen 436 SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKAL 510 (549)
T ss_pred ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHH
Confidence 01111334567777773221 1 3688889999999999887433 3499999999999999999999
Q ss_pred cC
Q 023583 278 NG 279 (280)
Q Consensus 278 nG 279 (280)
||
T Consensus 511 hg 512 (549)
T KOG0147|consen 511 HG 512 (549)
T ss_pred hh
Confidence 98
No 41
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.69 E-value=5.6e-16 Score=132.86 Aligned_cols=161 Identities=29% Similarity=0.475 Sum_probs=122.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 191 (280)
..+|||+|||+++++++|+++|..||.|..+.+..++.+++++|||||+|.+.+++..|+..++|..|.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999999642
Q ss_pred --CCCCCcC-----CCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEe
Q 023583 192 --PRGGERA-----AMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTF 264 (280)
Q Consensus 192 --~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f 264 (280)
....... ...................+++.+++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 1111111 000111122223344567899999999999999999999999997776655543333444444444
Q ss_pred CCHHHHHH
Q 023583 265 ETAEDLQS 272 (280)
Q Consensus 265 ~~~e~A~~ 272 (280)
.....+..
T Consensus 275 ~~~~~~~~ 282 (306)
T COG0724 275 EASKDALE 282 (306)
T ss_pred hHHHhhhh
Confidence 44443333
No 42
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.68 E-value=2.6e-16 Score=107.20 Aligned_cols=70 Identities=34% Similarity=0.715 Sum_probs=67.2
Q ss_pred EEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 115 l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
|||+|||.++++++|+++|+.||.|..+.+..+ .++..+|||||+|.+.++|.+|++.++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5889999999999999999999999999999999885
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=9.5e-17 Score=130.35 Aligned_cols=152 Identities=26% Similarity=0.509 Sum_probs=123.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 192 (280)
..||||+||+.+.+.+|..+|..||.+..+.+. .||+||+|.+..+|..|+..++|..+.|-.+.|+++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 368999999999999999999999999999886 689999999999999999999999999988999988754
Q ss_pred CCCCcCCCC--CCc-cCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHH
Q 023583 193 RGGERAAMG--PKL-QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (280)
Q Consensus 193 ~~~~~~~~~--~~~-~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~ 269 (280)
........+ ... ...........+.+.|.|++..+.+++|.+.|..+|.+..... .++++||+|...++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 332211111 011 1122222345689999999999999999999999999955443 36789999999999
Q ss_pred HHHHHHHhcCC
Q 023583 270 LQSALDAMNGV 280 (280)
Q Consensus 270 A~~Al~~lnG~ 280 (280)
|..|+..|+|.
T Consensus 146 a~ra~~~l~~~ 156 (216)
T KOG0106|consen 146 AKRALEKLDGK 156 (216)
T ss_pred hhhcchhccch
Confidence 99999999873
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.67 E-value=3.2e-15 Score=126.74 Aligned_cols=163 Identities=18% Similarity=0.287 Sum_probs=129.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeE--------EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 183 (280)
...|||.|||.++|-+++.++|++||-|.+ |.+.++. .|+-+|=|.+.|-..+++..|++.|++..+.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 456999999999999999999999998743 7788877 5999999999999999999999999999999999
Q ss_pred eEEecCCCCCCCCcCCCCCCc---------------------cCCCCCCCCCCCeEEEcCCCC----CCC-------HHH
Q 023583 184 VKVNFPEVPRGGERAAMGPKL---------------------QNSYQGFVDSPHKIYAGNLGW----GLT-------SQG 231 (280)
Q Consensus 184 l~v~~a~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~V~nLp~----~~t-------~~~ 231 (280)
|+|..+.....++....+... ...........++|.++|+-. ..+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 999998754433332222110 001122234567899999842 223 467
Q ss_pred HHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 232 l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
|++-+.+||.|..|.|. ...+.|.+-|.|.+.++|..|++.|+|
T Consensus 293 l~eec~K~G~v~~vvv~----d~hPdGvvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVY----DRHPDGVVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred HHHHHHHhCCcceEEEe----ccCCCceeEEEeCChHHHHHHHHHhcC
Confidence 77889999999999886 335689999999999999999999998
No 45
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=6.2e-16 Score=124.84 Aligned_cols=80 Identities=29% Similarity=0.549 Sum_probs=74.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..++||||+|+|.+..+.|+++|++||+|....++.|+.+|+++||+||.|++.+.|.+|++. -.-.|+||+..+.++.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 456899999999999999999999999999999999999999999999999999999999995 5568999999999886
Q ss_pred C
Q 023583 191 V 191 (280)
Q Consensus 191 ~ 191 (280)
.
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.62 E-value=4.3e-15 Score=115.61 Aligned_cols=68 Identities=43% Similarity=0.741 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|.++.++.|+.+++++|||||+|.+.++|+.|++.|||.
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~ 99 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999874
No 47
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=2.5e-15 Score=121.85 Aligned_cols=84 Identities=29% Similarity=0.438 Sum_probs=80.2
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
..++..+|.|.||+.+++|.+|+++|.+||.|.++.+.+|+.||.++|||||.|.+.++|.+|+..|||.-+++-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34477899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 023583 188 FPEV 191 (280)
Q Consensus 188 ~a~~ 191 (280)
|++.
T Consensus 265 wskP 268 (270)
T KOG0122|consen 265 WSKP 268 (270)
T ss_pred ecCC
Confidence 9874
No 48
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=2.8e-15 Score=102.31 Aligned_cols=70 Identities=37% Similarity=0.701 Sum_probs=65.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 115 LYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 115 l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++|+|||+|.+.++|..|++.++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999986 89999999999999999999999888999999874
No 49
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.61 E-value=2.8e-14 Score=114.27 Aligned_cols=168 Identities=18% Similarity=0.286 Sum_probs=121.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCC-CCceeEEEEEECCHHHHHHHHHHhhCCCcC---Ccee
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSQIG---GRTV 184 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~i~---g~~l 184 (280)
.+.-+||||.+||.++..-+|..+|..|---+...+...... ...+-+||+.|.+..+|.+|+..|||.+++ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 345689999999999999999999999865665555433222 234579999999999999999999999997 7889
Q ss_pred EEecCCCCCCCCcCCC-CCCcc------------CC--------------C-----------------------------
Q 023583 185 KVNFPEVPRGGERAAM-GPKLQ------------NS--------------Y----------------------------- 208 (280)
Q Consensus 185 ~v~~a~~~~~~~~~~~-~~~~~------------~~--------------~----------------------------- 208 (280)
++++++......+... +.... .. .
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 9988763211111000 00000 00 0
Q ss_pred -------------CCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHH
Q 023583 209 -------------QGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275 (280)
Q Consensus 209 -------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~ 275 (280)
........+|||-||..+++||+|+.+|+.|.+....+|... .| --.||++|.+.+.|..|+.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHH
Confidence 000001148999999999999999999999988777776422 22 3479999999999999999
Q ss_pred HhcCC
Q 023583 276 AMNGV 280 (280)
Q Consensus 276 ~lnG~ 280 (280)
.|+|.
T Consensus 267 ~lqg~ 271 (284)
T KOG1457|consen 267 HLQGN 271 (284)
T ss_pred Hhhcc
Confidence 99884
No 50
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=2.2e-15 Score=110.40 Aligned_cols=84 Identities=26% Similarity=0.531 Sum_probs=79.4
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
....+.|||||||++.++|++|-++|+++|+|..|.+-.|+.+..+-|||||+|-+.++|..|++.++|..++.+.|+++
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 023583 188 FPEV 191 (280)
Q Consensus 188 ~a~~ 191 (280)
|...
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 8653
No 51
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.4e-15 Score=115.27 Aligned_cols=78 Identities=28% Similarity=0.515 Sum_probs=72.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
-.++||||||+..+++.+|...|..||++..|+|-+++ .|||||+|++..||..|+..|||..|.|..|.|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36789999999999999999999999999999998765 8999999999999999999999999999999999987
Q ss_pred CCC
Q 023583 191 VPR 193 (280)
Q Consensus 191 ~~~ 193 (280)
...
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 443
No 52
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=1.4e-16 Score=123.59 Aligned_cols=84 Identities=27% Similarity=0.564 Sum_probs=78.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
..-.++.-|||||||++.||.+|...|++||+|..|.+++|..||+++||||+.|++.++...|+..|||..|.||.|+|
T Consensus 30 ~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 30 QEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred hhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 023583 187 NFPE 190 (280)
Q Consensus 187 ~~a~ 190 (280)
+...
T Consensus 110 DHv~ 113 (219)
T KOG0126|consen 110 DHVS 113 (219)
T ss_pred eecc
Confidence 8754
No 53
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=1.6e-14 Score=132.67 Aligned_cols=167 Identities=23% Similarity=0.291 Sum_probs=125.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
..+..+.++|+|||..+..++|...|..||+|.++.+. + .| --|+|+|.+..+|++|++.|....+..-++.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~-~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P-GG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c-cc---ceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 44556789999999999999999999999999999554 2 11 238999999999999999999999988888887
Q ss_pred cCCCCCCC-----CcCCCC----------CCcc-------CC-C----------CCCCCCCCeEEEcCCCCCCCHHHHHH
Q 023583 188 FPEVPRGG-----ERAAMG----------PKLQ-------NS-Y----------QGFVDSPHKIYAGNLGWGLTSQGLRD 234 (280)
Q Consensus 188 ~a~~~~~~-----~~~~~~----------~~~~-------~~-~----------~~~~~~~~~l~V~nLp~~~t~~~l~~ 234 (280)
|+...... ...... .... .. . .......++|||.||++.++.+++..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 75321111 000000 0000 00 0 00111234599999999999999999
Q ss_pred HhccCCCceEEEEeeeCCC---CCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 235 AFQGQPGLLSAKVIFERYT---GRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 235 ~F~~~g~v~~~~i~~~~~~---g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.|...|.|..+.|...+.. -.+.|||||+|.+.++|+.|++.|+|+
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred HHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 9999999999988765522 124599999999999999999999985
No 54
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.5e-14 Score=120.64 Aligned_cols=76 Identities=20% Similarity=0.310 Sum_probs=70.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 191 (280)
.++|||+|||+.+++++|+++|+.||.|.+|+|+++.. ++|||||+|+++++|..|+. |+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998863 57999999999999999996 899999999999998763
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=122.56 Aligned_cols=84 Identities=32% Similarity=0.597 Sum_probs=77.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
...+..++|+|+|||+...|.||+.+|++||.|.+|.|+.+. ..+||||||+|++.+||.+|-.+|||..+.||+|.|
T Consensus 91 ~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 344567899999999999999999999999999999999885 568999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023583 187 NFPEVP 192 (280)
Q Consensus 187 ~~a~~~ 192 (280)
..+...
T Consensus 169 n~ATar 174 (376)
T KOG0125|consen 169 NNATAR 174 (376)
T ss_pred eccchh
Confidence 988744
No 56
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.55 E-value=3.3e-14 Score=125.93 Aligned_cols=82 Identities=32% Similarity=0.545 Sum_probs=76.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC--ceeEEec
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNF 188 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g--~~l~v~~ 188 (280)
..++|||+|||+++|+++|+++|++||.|..+++++++.+++++|||||+|.+.++|.+|++.|++..+.| ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999876 6899988
Q ss_pred CCCC
Q 023583 189 PEVP 192 (280)
Q Consensus 189 a~~~ 192 (280)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 7643
No 57
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.55 E-value=1.4e-13 Score=119.17 Aligned_cols=159 Identities=19% Similarity=0.325 Sum_probs=126.6
Q ss_pred CCeEEEeCCC-CCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 112 AARLYVGNLP-YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 112 ~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
...|.|.||. ..+|.+.|..+|+.||.|.+|.|.+++ +--|+|+|.+...|..|+..|+|..|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5678888886 559999999999999999999999887 4679999999999999999999999999999999987
Q ss_pred CCCCCCcC------------------CCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCC
Q 023583 191 VPRGGERA------------------AMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY 252 (280)
Q Consensus 191 ~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~ 252 (280)
.....-.. +........+....++..+|+..|+|..+++++++..|...|..+....+.
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff--- 448 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF--- 448 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec---
Confidence 33211111 001111122233345667999999999999999999999998876665542
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 253 TGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 253 ~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
++.+-+|.+.+.+.|+|..|+-.+|+
T Consensus 449 -~kd~kmal~q~~sveeA~~ali~~hn 474 (492)
T KOG1190|consen 449 -QKDRKMALPQLESVEEAIQALIDLHN 474 (492)
T ss_pred -CCCcceeecccCChhHhhhhcccccc
Confidence 34466999999999999999988865
No 58
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.55 E-value=8.8e-15 Score=115.81 Aligned_cols=83 Identities=33% Similarity=0.555 Sum_probs=78.7
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
+.+.-..|-|.||.+.++.++|+.+|++||.|-+|.|.+|..|+.++|||||-|....+|+.|+..|+|.+++|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 023583 188 FPE 190 (280)
Q Consensus 188 ~a~ 190 (280)
++.
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 876
No 59
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=9.9e-15 Score=117.92 Aligned_cols=62 Identities=39% Similarity=0.646 Sum_probs=59.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
.+|||+||+|.+..+.|+++|++||+|++..|+.|+.+|++||||||+|++.++|.+|++--
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999999999999999999999998743
No 60
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=5.2e-14 Score=120.16 Aligned_cols=82 Identities=18% Similarity=0.419 Sum_probs=76.9
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
+.+...+|||..+..+.+|+||+..|+.||+|..|.+-++...+.++||+||+|.+......|+..||=..++|..|+|.
T Consensus 206 eAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred HHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 34567899999999999999999999999999999999999888999999999999999999999999999999999997
Q ss_pred cC
Q 023583 188 FP 189 (280)
Q Consensus 188 ~a 189 (280)
.+
T Consensus 286 k~ 287 (544)
T KOG0124|consen 286 KC 287 (544)
T ss_pred cc
Confidence 64
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=3.4e-14 Score=96.62 Aligned_cols=62 Identities=40% Similarity=0.657 Sum_probs=59.2
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 218 l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
|||+|||..+++++|+++|++||.|..+.+..+ .++..+|+|||+|.+.++|.+|++.|||.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 799999999999999999999999999999988 58899999999999999999999999983
No 62
>PLN03213 repressor of silencing 3; Provisional
Probab=99.52 E-value=5.6e-14 Score=124.18 Aligned_cols=77 Identities=22% Similarity=0.416 Sum_probs=70.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCH--HHHHHHHHHhhCCCcCCceeEEe
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSV--EEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~--~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
....+||||||++.+++++|+..|..||.|.+|.|++ .+| ||||||+|... .++.+|+..|||..|.||.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3457899999999999999999999999999999994 467 99999999987 68999999999999999999999
Q ss_pred cCC
Q 023583 188 FPE 190 (280)
Q Consensus 188 ~a~ 190 (280)
.++
T Consensus 84 KAK 86 (759)
T PLN03213 84 KAK 86 (759)
T ss_pred ecc
Confidence 876
No 63
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=4.8e-14 Score=127.54 Aligned_cols=172 Identities=21% Similarity=0.274 Sum_probs=130.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
......+||++||...++.+++++...||++....++.|..+|-++||||.+|.+......|+..|||+.++++.|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCCcCCCC--C----Ccc-CCCCCCCCCCCeEEEcCCC--CCC-C-------HHHHHHHhccCCCceEEEEeee-
Q 023583 189 PEVPRGGERAAMG--P----KLQ-NSYQGFVDSPHKIYAGNLG--WGL-T-------SQGLRDAFQGQPGLLSAKVIFE- 250 (280)
Q Consensus 189 a~~~~~~~~~~~~--~----~~~-~~~~~~~~~~~~l~V~nLp--~~~-t-------~~~l~~~F~~~g~v~~~~i~~~- 250 (280)
+-........... . ... ...+....+...|.+.|+= ..+ . -++++..+.+||.|..|.+.++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 7643322221111 0 000 0001122334455555541 111 1 1456777889999999999877
Q ss_pred C--CCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 251 R--YTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 251 ~--~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
. ...-..|..||+|.+.+++++|.++|+|-
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr 477 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGR 477 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCc
Confidence 2 23445678999999999999999999983
No 64
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=1.3e-13 Score=97.42 Aligned_cols=80 Identities=26% Similarity=0.472 Sum_probs=71.9
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
+....+.|||+|||+++|.+++-++|.+||.|..|++-..+ ..+|.|||.|++..+|++|+..|+|..+.++.+.|.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 34456789999999999999999999999999999996443 458999999999999999999999999999999998
Q ss_pred cCC
Q 023583 188 FPE 190 (280)
Q Consensus 188 ~a~ 190 (280)
+-.
T Consensus 91 yyq 93 (124)
T KOG0114|consen 91 YYQ 93 (124)
T ss_pred ecC
Confidence 754
No 65
>smart00362 RRM_2 RNA recognition motif.
Probab=99.50 E-value=1.7e-13 Score=92.94 Aligned_cols=72 Identities=40% Similarity=0.759 Sum_probs=67.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 114 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
+|||+|||..+++++|+++|..||.|..+.+..+. +.++|+|||+|.+.++|..|++.++|..+.|+.+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 7789999999999999999999999999999998873
No 66
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.50 E-value=5.7e-14 Score=126.28 Aligned_cols=81 Identities=36% Similarity=0.726 Sum_probs=78.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 192 (280)
..|||||+|+++++++|..+|+..|.|.+++++.|+.+|+++||||++|.+.+++..|++.|+|..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred C
Q 023583 193 R 193 (280)
Q Consensus 193 ~ 193 (280)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 67
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.1e-13 Score=102.40 Aligned_cols=87 Identities=24% Similarity=0.392 Sum_probs=81.4
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 106 VAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 106 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
...+.+.-.|||.++...++|++|.+.|..||+|+++.+-.|+.||..+|||+|+|++.++|++|+..+||..+.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 45556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 023583 186 VNFPEVP 192 (280)
Q Consensus 186 v~~a~~~ 192 (280)
|+|+-.+
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9998644
No 68
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=2.1e-13 Score=112.06 Aligned_cols=77 Identities=18% Similarity=0.202 Sum_probs=70.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
...+|||+||++.+|+++|+++|+.||.|.+|+|+++. ..+|+|||+|++++++..|+. |+|..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999884 456899999999999999996 89999999999998765
Q ss_pred C
Q 023583 191 V 191 (280)
Q Consensus 191 ~ 191 (280)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 3
No 69
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=9e-14 Score=112.86 Aligned_cols=68 Identities=28% Similarity=0.451 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+..++|.|.||+.++++++|.++|..||.|.++.+.+|+.||.+||||||.|.+.++|.+||..|||.
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~ 254 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY 254 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc
Confidence 35678999999999999999999999999999999999999999999999999999999999999994
No 70
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=7.5e-13 Score=118.02 Aligned_cols=164 Identities=16% Similarity=0.246 Sum_probs=118.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCC--Ccee---EEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD--RSRG---FGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~--~~~g---~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
.-.+.||||+||++++|+.|...|..||.+.--+-.+....+ -++| |+|+.|+++..+..-+..+.- .....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 346789999999999999999999999988643332222222 2456 999999999998887765443 33333
Q ss_pred EEecCCCCCCCC----cCCC--CCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhc-cCCCceEEEEeeeCCCCCCc
Q 023583 185 KVNFPEVPRGGE----RAAM--GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ-GQPGLLSAKVIFERYTGRSR 257 (280)
Q Consensus 185 ~v~~a~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~~~i~~~~~~g~~k 257 (280)
.+.++...-... .... ...-........++.++||||+||.-++-++|-.+|+ .||.|.++-|=.|++-+..|
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 332222111000 0000 0000011234567789999999999999999999998 89999999999998889999
Q ss_pred cEEEEEeCCHHHHHHHHHH
Q 023583 258 GFGFVTFETAEDLQSALDA 276 (280)
Q Consensus 258 g~afV~f~~~e~A~~Al~~ 276 (280)
|-|-|.|.+..+-.+||.+
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999999999964
No 71
>smart00360 RRM RNA recognition motif.
Probab=99.47 E-value=3.1e-13 Score=91.23 Aligned_cols=71 Identities=39% Similarity=0.714 Sum_probs=67.0
Q ss_pred EeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 117 VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 117 V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
|+|||..+++++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|..|++.+++..+.|+.+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988788999999999999999999999999999999998873
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=6.1e-13 Score=90.64 Aligned_cols=61 Identities=36% Similarity=0.586 Sum_probs=56.4
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 218 IYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 218 l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
|+|+|||+.+++++|+++|+.+|.|..+.+..++. |..+|+|||+|.+.++|.+|++.+||
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~ 61 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNG 61 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCC
Confidence 79999999999999999999999999999999886 99999999999999999999998886
No 73
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=2.3e-12 Score=87.74 Aligned_cols=74 Identities=42% Similarity=0.784 Sum_probs=68.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 114 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ .++|+|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987744 7799999999999999999999999999999998863
No 74
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.4e-13 Score=112.74 Aligned_cols=84 Identities=25% Similarity=0.400 Sum_probs=79.8
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+...|||..|.+-++.++|.-+|+.||.|.++.+++|..||.+..||||+|.+.+++++|+-.|++..|+.|+|.|
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 023583 187 NFPE 190 (280)
Q Consensus 187 ~~a~ 190 (280)
+++.
T Consensus 314 DFSQ 317 (479)
T KOG0415|consen 314 DFSQ 317 (479)
T ss_pred ehhh
Confidence 9874
No 75
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.8e-13 Score=109.40 Aligned_cols=88 Identities=32% Similarity=0.522 Sum_probs=82.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
....++||||+|...+||.-|...|-+||.|..|.+..|..++++||||||+|...+||.+|+..||+..+.||.|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 023583 189 PEVPRGGE 196 (280)
Q Consensus 189 a~~~~~~~ 196 (280)
+++.+..+
T Consensus 87 AkP~kike 94 (298)
T KOG0111|consen 87 AKPEKIKE 94 (298)
T ss_pred cCCccccC
Confidence 98655443
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.38 E-value=1.6e-11 Score=107.30 Aligned_cols=77 Identities=30% Similarity=0.496 Sum_probs=67.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
...++||+||.+.+....|++.|.-.|.|..|.+-.|+ .|.++|+|.++|.+.-.|-.|+..+++.-+..++..++.
T Consensus 214 l~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 214 LHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred ccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 35689999999999999999999999999999998888 679999999999999999999999997666666666654
No 77
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=3.9e-14 Score=110.01 Aligned_cols=66 Identities=29% Similarity=0.535 Sum_probs=63.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+--|||+|||+.+|+.||.-+|++||.|++|.+++|+.||+++||||+.|.+.-+..-|+..|||+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi 100 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI 100 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc
Confidence 456999999999999999999999999999999999999999999999999999999999999985
No 78
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1e-12 Score=110.91 Aligned_cols=67 Identities=30% Similarity=0.578 Sum_probs=61.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.+++|+|.|+|+...+.||+.+|.+||.|.+|.|+.+. ..+||||||+|.+.++|++|.++|||.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt 159 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGT 159 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcc
Confidence 3456899999999999999999999999999999999873 567999999999999999999999995
No 79
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=2.4e-12 Score=110.66 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=118.5
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHcc----CCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEA----GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
.-.|..++||+++++.++..+|..- |-.+.|.++... +|+..|-|||.|..+++|..|+.+ |...|+.|.|.+-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 3457788999999999999999742 345667777665 799999999999999999999996 7777877877775
Q ss_pred cCCCCC--------C----CC--cCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE---EEEeee
Q 023583 188 FPEVPR--------G----GE--RAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS---AKVIFE 250 (280)
Q Consensus 188 ~a~~~~--------~----~~--~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~---~~i~~~ 250 (280)
.+.... . .. ....................+|.+++||+..+.++|.++|..|..-.+ |..+.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 543100 0 00 000000011111112233578999999999999999999988854332 444444
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 251 RYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 251 ~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..|+..|-|||+|.+.+.|..|....|+
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk 346 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHK 346 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHH
Confidence 4799999999999999999999887664
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=3.7e-12 Score=90.14 Aligned_cols=63 Identities=25% Similarity=0.394 Sum_probs=58.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...|||+|||+.+|.+++.++|.+||.|..|++--.+ ..+|.|||.|.+..+|.+|+++|+|+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~ 80 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGY 80 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccc
Confidence 4679999999999999999999999999999997655 45899999999999999999999985
No 81
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.6e-12 Score=95.45 Aligned_cols=67 Identities=22% Similarity=0.424 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+++|||+||++.++|++|.++|+.+|.|..|..-.|+.+...-|||||+|.+.++|..|++.+||+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgt 101 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGT 101 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccC
Confidence 4689999999999999999999999999999999999989999999999999999999999999985
No 82
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=5.7e-12 Score=85.87 Aligned_cols=61 Identities=31% Similarity=0.452 Sum_probs=55.5
Q ss_pred HHHHHHHHH----ccCCeeEEE-EeecCCC--CCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 126 SSSLAEVFA----EAGTVASAE-IVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 126 e~~l~~~F~----~~G~i~~v~-~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
+++|+++|. .||.|.++. ++.++.+ +.++|||||+|.+.++|.+|++.|||..+.||.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578889998 999999996 7777666 899999999999999999999999999999999976
No 83
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=3.4e-12 Score=115.63 Aligned_cols=164 Identities=28% Similarity=0.513 Sum_probs=131.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHcc-----------C-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEA-----------G-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS 177 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~-----------G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 177 (280)
...+.++|+++|+.++++.+..+|..- | .+..+.+ ...++|||++|.+.++|..|+. +++.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~~-~~~~ 245 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAMA-LDGI 245 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhhc-ccch
Confidence 346789999999999999999888653 2 2344433 3347999999999999999998 7999
Q ss_pred CcCCceeEEecCCCCCCCCcCCCCC------CccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeC
Q 023583 178 QIGGRTVKVNFPEVPRGGERAAMGP------KLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER 251 (280)
Q Consensus 178 ~i~g~~l~v~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~ 251 (280)
.+.|+.+.+................ .............++++|+|||..+++++++++...||.+....++.+.
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 9999999998765433322221111 1122233445567899999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 252 YTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 252 ~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+|.++||||.+|.+......|+..|||+
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm 354 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGM 354 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchh
Confidence 99999999999999999999999999985
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.32 E-value=2.7e-12 Score=101.86 Aligned_cols=69 Identities=33% Similarity=0.534 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++....|.|-||-+.++.++|+.+|++||.|.+|.|..|+.|+.++|||||.|.+..+|+.|+++|+|.
T Consensus 10 v~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~ 78 (256)
T KOG4207|consen 10 VEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA 78 (256)
T ss_pred cccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcce
Confidence 445678999999999999999999999999999999999999999999999999999999999999984
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=7.1e-12 Score=104.63 Aligned_cols=68 Identities=21% Similarity=0.543 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++-++|||..|++.++|..|+..|+.||.|+.|.+++|..||+++|||||+|.+.-+...|.+..+|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~ 166 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGI 166 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCc
Confidence 56689999999999999999999999999999999999999999999999999999999999988874
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=1.3e-11 Score=83.51 Aligned_cols=62 Identities=35% Similarity=0.641 Sum_probs=57.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 217 ~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+|+|+|||..+++++|+++|..||.+..+.+..++ +.++|+|||+|.+.++|.+|++.+||.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~ 62 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGT 62 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCc
Confidence 58999999999999999999999999999988776 788999999999999999999999863
No 87
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=2.9e-11 Score=105.99 Aligned_cols=107 Identities=22% Similarity=0.317 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHhhCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCC
Q 023583 162 GSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 241 (280)
Q Consensus 162 ~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~ 241 (280)
.+++++.+++-.-. |..|.|.-...+....... -......-.+.|||+.||.++.|++|.-+|++.|.
T Consensus 42 ~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~-------weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~ 109 (506)
T KOG0117|consen 42 QSEEAALKALLERT-----GYTLVVENGQRKYGGPPPG-------WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK 109 (506)
T ss_pred ccHHHHHHHHHHhc-----CceEEEeccccccCCCCCc-------ccCCCCCCCceEEecCCCccccchhhHHHHHhccc
Confidence 33566666665433 4556666544333322221 01111245689999999999999999999999999
Q ss_pred ceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 242 LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 242 v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
|-+++++.|+.+|.+||||||.|.+.++|+.|++.||+.
T Consensus 110 I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~ 148 (506)
T KOG0117|consen 110 IYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY 148 (506)
T ss_pred eeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999973
No 88
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.30 E-value=8.8e-12 Score=104.14 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=56.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.++|||+|||+.+++++|+++|+.||.|.+|.++.+.. .+|||||+|.+.++|..|+. |||.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~ 65 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGA 65 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCC
Confidence 46899999999999999999999999999999988763 57999999999999999995 8874
No 89
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.27 E-value=2.3e-10 Score=98.33 Aligned_cols=166 Identities=18% Similarity=0.181 Sum_probs=130.4
Q ss_pred ccCCCCCeEEEeCCCCC-CCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 107 AASDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
....+...++|-+|... ++-+.|.++|-.||.|++|.+++.+ .|.|.|++.+....+.|+..|++..+-|.+|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34456778999999865 7778899999999999999999776 79999999999999999999999999999999
Q ss_pred EecCCCCCCCCc--------------------CCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCc-eE
Q 023583 186 VNFPEVPRGGER--------------------AAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL-LS 244 (280)
Q Consensus 186 v~~a~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v-~~ 244 (280)
|.+++....... .+..............+++.|+.-|.|..+||+.|..+|...+.. ..
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 998864322111 111222233345566788999999999999999999999876543 44
Q ss_pred EEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 245 AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 245 ~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
++++.-+ + ....-|.++|.+.++|..||..||.
T Consensus 437 vkvFp~k-s-erSssGllEfe~~s~Aveal~~~NH 469 (494)
T KOG1456|consen 437 VKVFPLK-S-ERSSSGLLEFENKSDAVEALMKLNH 469 (494)
T ss_pred EEeeccc-c-cccccceeeeehHHHHHHHHHHhcc
Confidence 5555443 2 2234689999999999999999885
No 90
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=1.8e-11 Score=82.39 Aligned_cols=61 Identities=39% Similarity=0.650 Sum_probs=57.4
Q ss_pred EcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 220 AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 220 V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|+..|||.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~ 61 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGK 61 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999988878999999999999999999999999863
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=1.6e-11 Score=79.77 Aligned_cols=56 Identities=39% Similarity=0.722 Sum_probs=50.8
Q ss_pred HHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 129 LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 129 l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
|.++|++||.|..+.+..+. +|+|||+|.+.++|..|++.|||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997554 699999999999999999999999999999999874
No 92
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.26 E-value=1.7e-10 Score=102.55 Aligned_cols=162 Identities=23% Similarity=0.288 Sum_probs=117.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeE-EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
.....|.+++||+.||++||.++|+..-.|.. |.++.+. -+++.|-|||+|++.+.|++|+.. |...|+.|-|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 35678999999999999999999998865555 4445554 678999999999999999999996 88899999999966
Q ss_pred CCCCC------------C--CCcCC----CC-------------------------------------C-----------
Q 023583 189 PEVPR------------G--GERAA----MG-------------------------------------P----------- 202 (280)
Q Consensus 189 a~~~~------------~--~~~~~----~~-------------------------------------~----------- 202 (280)
+.... . ..... .. .
T Consensus 179 Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~ 258 (510)
T KOG4211|consen 179 SSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPN 258 (510)
T ss_pred hHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccc
Confidence 53000 0 00000 00 0
Q ss_pred --Cc--c------CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHH
Q 023583 203 --KL--Q------NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (280)
Q Consensus 203 --~~--~------~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~ 272 (280)
.. . ............++.++||+..++.++.++|+..-. ..+.|-..+ +|+..|-|.|+|.+.++|..
T Consensus 259 ~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig~-dGr~TGEAdveF~t~edav~ 336 (510)
T KOG4211|consen 259 YPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEIGP-DGRATGEADVEFATGEDAVG 336 (510)
T ss_pred cCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEeCC-CCccCCcceeecccchhhHh
Confidence 00 0 000000112257999999999999999999985533 355555544 79999999999999999999
Q ss_pred HHH
Q 023583 273 ALD 275 (280)
Q Consensus 273 Al~ 275 (280)
|+.
T Consensus 337 Ams 339 (510)
T KOG4211|consen 337 AMG 339 (510)
T ss_pred hhc
Confidence 984
No 93
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.26 E-value=3.7e-11 Score=95.62 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=78.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHcc-CCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
........++|+.+|..+.+.++..+|.++ |.+.++++-|++.||.++|||||+|++++.|+-|.+.||+..+.|+.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344566789999999999999999999998 8899999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 023583 186 VNFPEVP 192 (280)
Q Consensus 186 v~~a~~~ 192 (280)
+.+-...
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9876543
No 94
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.25 E-value=2.8e-11 Score=99.61 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=57.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...+|+|+||++.+|+++|+++|+.||.|.+|.+++|. ..+|+|||+|.+.++|..|+ .|||.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa 66 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGA 66 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCC
Confidence 35799999999999999999999999999999999874 55689999999999999999 48884
No 95
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=2.2e-12 Score=103.17 Aligned_cols=139 Identities=24% Similarity=0.371 Sum_probs=117.4
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
.....+||||+|+...++|+-|.++|-..|+|..|.|..++ .++.+ ||||.|+++..+.-|++.+||..+.++.+.|.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 34567899999999999999999999999999999987776 56666 99999999999999999999999999998886
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcC----CCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEE
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGN----LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT 263 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~ 263 (280)
. +.|| |...++++.+...|+.-|.+..+++..+. +|+++.++|+.
T Consensus 83 ~------------------------------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~ 131 (267)
T KOG4454|consen 83 L------------------------------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVT 131 (267)
T ss_pred c------------------------------ccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchh
Confidence 3 3333 56678999999999999999999998887 48899999999
Q ss_pred eCCHHHHHHHHHHhcC
Q 023583 264 FETAEDLQSALDAMNG 279 (280)
Q Consensus 264 f~~~e~A~~Al~~lnG 279 (280)
+-.....-.++....|
T Consensus 132 ~qr~~~~P~~~~~y~~ 147 (267)
T KOG4454|consen 132 YQRLCAVPFALDLYQG 147 (267)
T ss_pred hhhhhcCcHHhhhhcc
Confidence 8766666666654443
No 96
>PLN03213 repressor of silencing 3; Provisional
Probab=99.20 E-value=3.8e-11 Score=106.53 Aligned_cols=62 Identities=21% Similarity=0.421 Sum_probs=57.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH--HHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA--EDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~--e~A~~Al~~lnG~ 280 (280)
.-+||||||++.+++++|+..|..||.|.+|.|+ +.+| ||||||+|.+. .++.+||..|||.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGA 73 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGC 73 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCC
Confidence 4689999999999999999999999999999999 4466 99999999987 7899999999985
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.20 E-value=4.4e-10 Score=97.70 Aligned_cols=160 Identities=16% Similarity=0.234 Sum_probs=117.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC--ceeEEecC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNFP 189 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g--~~l~v~~a 189 (280)
--+++|+++-+-++-+-|..+|++||.|..|.-... ...-.|+|+|.+...|..|-..|+|..|.. ..|+++++
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~K----nn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTK----NNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEec----ccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 346889999999999999999999999988866532 223458999999999999999999998864 45667665
Q ss_pred CCCC-----------CCCcC--CCC----------------------------C---CccCCCCCCCC--CCCeEEEcCC
Q 023583 190 EVPR-----------GGERA--AMG----------------------------P---KLQNSYQGFVD--SPHKIYAGNL 223 (280)
Q Consensus 190 ~~~~-----------~~~~~--~~~----------------------------~---~~~~~~~~~~~--~~~~l~V~nL 223 (280)
+... .-... ..+ . ........... ..+.|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 4110 00000 000 0 00000000011 1467888888
Q ss_pred C-CCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 224 G-WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 224 p-~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
. ..+|.+-|..+|.-||.|.+|+|++.+ +.-|.|.|.+...|+-|+.+|+|.
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~ 358 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGH 358 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcc
Confidence 6 568999999999999999999999876 357999999999999999999984
No 98
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3.5e-11 Score=93.27 Aligned_cols=60 Identities=37% Similarity=0.519 Sum_probs=56.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
.++|||+||+..+++.+|...|..||.+..|.|-..+ .|||||+|.++-+|..|+..|||
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG 69 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDG 69 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCC
Confidence 5899999999999999999999999999999987654 79999999999999999999998
No 99
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=4.5e-11 Score=88.69 Aligned_cols=68 Identities=25% Similarity=0.428 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.....|||.++....++++|.+.|..||.|+.+.+..|.-+|-.||||+|+|.+.++|+.|+..|||+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~ 137 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGA 137 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccch
Confidence 34578999999999999999999999999999999999999999999999999999999999999984
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.16 E-value=2.2e-10 Score=77.70 Aligned_cols=63 Identities=37% Similarity=0.635 Sum_probs=58.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 217 ~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+ ..+|+|||+|.+.++|..|++.++|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~ 63 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGK 63 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCC
Confidence 4899999999999999999999999999999887644 77999999999999999999999874
No 101
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.15 E-value=3.4e-11 Score=93.85 Aligned_cols=66 Identities=26% Similarity=0.435 Sum_probs=63.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
...+|||+||+..++++.|+++|-+.|.|+++.+.+|+.++..+|||||+|.+.|+|+-|++.||+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~ 73 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNM 73 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHH
Confidence 457999999999999999999999999999999999999999999999999999999999999985
No 102
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.15 E-value=1.3e-10 Score=99.38 Aligned_cols=66 Identities=33% Similarity=0.664 Sum_probs=63.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.++|||+|||+.+++++|+++|..||.|..+.+..++.+|.++|||||+|.+.++|..|++.++|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~ 180 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGK 180 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCC
Confidence 589999999999999999999999999999999999889999999999999999999999999873
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.12 E-value=1.2e-10 Score=105.07 Aligned_cols=65 Identities=29% Similarity=0.644 Sum_probs=63.7
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.+||||+|+++++++|..+|++.|.|..++++.|+.+|+.|||||++|.+.++|..|++.|||.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~ 83 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGA 83 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999984
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.09 E-value=1.9e-10 Score=99.05 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=127.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
....+.|++++.+.+.+.+...++..+|.+....+........++|++++.|...+.+..|+.......+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 45788999999999999999999999998888887776667899999999999999999999864435677777666655
Q ss_pred CCCCCCCcCCCCCCccCCCCCCCCCCCeEE-EcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHH
Q 023583 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIY-AGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAE 268 (280)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e 268 (280)
...... ..............+++ |+|++..+++++|+..|..+|.|..+++..+..+|..+|+|+|.|.+..
T Consensus 166 ~~~~~~-------~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 166 TRRGLR-------PKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred cccccc-------ccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 432210 00111111222344555 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 023583 269 DLQSALD 275 (280)
Q Consensus 269 ~A~~Al~ 275 (280)
.+..++.
T Consensus 239 ~~~~~~~ 245 (285)
T KOG4210|consen 239 SKKLALN 245 (285)
T ss_pred hHHHHhh
Confidence 9999886
No 105
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.09 E-value=1.1e-10 Score=97.38 Aligned_cols=77 Identities=30% Similarity=0.521 Sum_probs=72.0
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
.......+|+||||.+.++..+|+..|++||+|.++.|+ ++|+||.|...++|..|++.||+..+.|+++.|
T Consensus 73 sKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--------kdy~fvh~d~~eda~~air~l~~~~~~gk~m~v 144 (346)
T KOG0109|consen 73 SKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--------KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHV 144 (346)
T ss_pred ccCCCccccccCCCCccccCHHHhhhhcccCCceeeeee--------cceeEEEEeeccchHHHHhcccccccccceeee
Confidence 335678899999999999999999999999999999998 789999999999999999999999999999999
Q ss_pred ecCCC
Q 023583 187 NFPEV 191 (280)
Q Consensus 187 ~~a~~ 191 (280)
.++..
T Consensus 145 q~sts 149 (346)
T KOG0109|consen 145 QLSTS 149 (346)
T ss_pred eeecc
Confidence 98763
No 106
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.09 E-value=7.5e-10 Score=103.15 Aligned_cols=113 Identities=21% Similarity=0.393 Sum_probs=88.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....-++|||||.|+..++|.+|+++|+.||.|.+|.++.. +|+|||.+.+..+|.+|+..|+...+.++.|+|
T Consensus 416 ~isV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 416 HISVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred ceeEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 34445789999999999999999999999999999998754 799999999999999999999999999999999
Q ss_pred ecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhc
Q 023583 187 NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQ 237 (280)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~ 237 (280)
.|+..+..... +....+ ..+-|.-+||.--.+++..++.
T Consensus 490 ~Wa~g~G~kse----------~k~~wD--~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 490 AWAVGKGPKSE----------YKDYWD--VELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred eeeccCCcchh----------hhhhhh--cccCeeEeehHhcCHHHHHhhh
Confidence 99875443321 001111 1223444688766666777764
No 107
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.3e-10 Score=94.31 Aligned_cols=84 Identities=31% Similarity=0.553 Sum_probs=79.7
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
.+..+.+.|||-.||....+.+|..+|-.||.|.+.++..|+.|+.+++|+||.|.+..+++.||..|||..|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 55668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 023583 187 NFPE 190 (280)
Q Consensus 187 ~~a~ 190 (280)
.+..
T Consensus 360 QLKR 363 (371)
T KOG0146|consen 360 QLKR 363 (371)
T ss_pred hhcC
Confidence 8754
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=8.5e-12 Score=117.02 Aligned_cols=134 Identities=22% Similarity=0.331 Sum_probs=116.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
...++||.||+..+.+.+|...|..+|.+..+++......++.||+||++|...+++.+|+...+ ..+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhh---------
Confidence 44579999999999999999999999999888887555678899999999999999999998533 33333
Q ss_pred CCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHH
Q 023583 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (280)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A 270 (280)
...++|+|.|+..|.+.++.++.++|.+...+++..+ .|+.+|.|+|.|.+..++
T Consensus 736 ------------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~ 790 (881)
T KOG0128|consen 736 ------------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADA 790 (881)
T ss_pred ------------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchh
Confidence 1369999999999999999999999999999977666 799999999999999999
Q ss_pred HHHHHHhcC
Q 023583 271 QSALDAMNG 279 (280)
Q Consensus 271 ~~Al~~lnG 279 (280)
.+++...++
T Consensus 791 s~~~~s~d~ 799 (881)
T KOG0128|consen 791 SRKVASVDV 799 (881)
T ss_pred hhhcccchh
Confidence 998876654
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.06 E-value=4.8e-10 Score=76.32 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=46.5
Q ss_pred HHHHHHHhc----cCCCceEEE-EeeeCCC--CCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 229 SQGLRDAFQ----GQPGLLSAK-VIFERYT--GRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 229 ~~~l~~~F~----~~g~v~~~~-i~~~~~~--g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+++|+++|+ .||.|..+. +..++.+ |.++|+|||+|.+.++|..|+..|||.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 578888888 999999995 7777666 999999999999999999999999983
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.05 E-value=3e-09 Score=91.63 Aligned_cols=153 Identities=18% Similarity=0.205 Sum_probs=119.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh--hCCCcCCcee
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF--DGSQIGGRTV 184 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l--~g~~i~g~~l 184 (280)
....++..|.|++|-..++|.+|.+.++.||+|..+..... +..|.|+|++.+.|+.++... +...+.|+.-
T Consensus 26 hk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~A 99 (494)
T KOG1456|consen 26 HKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQA 99 (494)
T ss_pred CCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchh
Confidence 44556779999999999999999999999999998877644 468999999999999988632 4567889998
Q ss_pred EEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeE--EEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEE
Q 023583 185 KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKI--YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFV 262 (280)
Q Consensus 185 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV 262 (280)
.+.++..+...+... ....+.+.| .|-|--+.+|-|-|..++..+|.|.+|.|++. +|. -|+|
T Consensus 100 l~NyStsq~i~R~g~----------es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmV 164 (494)
T KOG1456|consen 100 LFNYSTSQCIERPGD----------ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMV 164 (494)
T ss_pred hcccchhhhhccCCC----------CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEE
Confidence 888876443322211 001122333 35566678999999999999999999999865 444 5999
Q ss_pred EeCCHHHHHHHHHHhcCC
Q 023583 263 TFETAEDLQSALDAMNGV 280 (280)
Q Consensus 263 ~f~~~e~A~~Al~~lnG~ 280 (280)
+|++.+.|++|..+|||.
T Consensus 165 EFdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 165 EFDSVEVAQRAKAALNGA 182 (494)
T ss_pred eechhHHHHHHHhhcccc
Confidence 999999999999999994
No 111
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.02 E-value=4.3e-10 Score=92.15 Aligned_cols=155 Identities=26% Similarity=0.411 Sum_probs=118.2
Q ss_pred CeEEEeCCCCCCCHHH-H--HHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 113 ARLYVGNLPYSMTSSS-L--AEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~-l--~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
...+++++-.++..+- | -..|+.|-....-.++++. .+.-++++|+.|+......++-..-+++.++-+.++....
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 3456666666555544 3 5667777666666677666 6777999999999887777777666777777776444322
Q ss_pred CCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHH
Q 023583 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (280)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~ 269 (280)
.... ............+||.+-|..+++.+-|-..|.+|..-...++++|+-+|+++|||||.|.+..+
T Consensus 176 tswe-----------dPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad 244 (290)
T KOG0226|consen 176 TSWE-----------DPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPAD 244 (290)
T ss_pred cccC-----------CcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHH
Confidence 2111 11122334456799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 023583 270 LQSALDAMNG 279 (280)
Q Consensus 270 A~~Al~~lnG 279 (280)
+.+|+..|||
T Consensus 245 ~~rAmrem~g 254 (290)
T KOG0226|consen 245 YVRAMREMNG 254 (290)
T ss_pred HHHHHHhhcc
Confidence 9999999998
No 112
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.02 E-value=1e-08 Score=88.66 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=116.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
.++...|..++||+..++.+|..+|.-.....-.+.+.....|+..|.|.|.|.+.+.-..|++. +...+++|.|.|..
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYk 135 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYK 135 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeec
Confidence 44556678889999999999999998754333333333344577789999999999999999996 88888999999987
Q ss_pred CCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccC----CCceEEEEeeeCCCCCCccEEEEEe
Q 023583 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQ----PGLLSAKVIFERYTGRSRGFGFVTF 264 (280)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~~i~~~~~~g~~kg~afV~f 264 (280)
+.....-.-.... ......-.....--.|.+++||+++++.|+.++|... |.++.+-+++.+ +|+..|-|||.|
T Consensus 136 a~ge~f~~iagg~-s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlf 213 (508)
T KOG1365|consen 136 ATGEEFLKIAGGT-SNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLF 213 (508)
T ss_pred cCchhheEecCCc-cccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEe
Confidence 6533221111100 0000000111123467889999999999999999633 344555555554 799999999999
Q ss_pred CCHHHHHHHHHHh
Q 023583 265 ETAEDLQSALDAM 277 (280)
Q Consensus 265 ~~~e~A~~Al~~l 277 (280)
...++|+.||.+-
T Consensus 214 a~ee~aq~aL~kh 226 (508)
T KOG1365|consen 214 ACEEDAQFALRKH 226 (508)
T ss_pred cCHHHHHHHHHHH
Confidence 9999999999753
No 113
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.96 E-value=2.7e-09 Score=96.36 Aligned_cols=85 Identities=26% Similarity=0.459 Sum_probs=78.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.-.+.|||.+|+..+...+|+++|++||.|....+|.+..+...++|+||++.+.++|.+||..|+...++||.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34578999999999999999999999999999999999888888999999999999999999999999999999999988
Q ss_pred CCCCC
Q 023583 190 EVPRG 194 (280)
Q Consensus 190 ~~~~~ 194 (280)
+....
T Consensus 483 KNEp~ 487 (940)
T KOG4661|consen 483 KNEPG 487 (940)
T ss_pred ccCcc
Confidence 75443
No 114
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.94 E-value=1.3e-09 Score=94.25 Aligned_cols=84 Identities=30% Similarity=0.491 Sum_probs=77.5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..++|||++||.++++.+++++|.+||.|..+.++.|..+.+++||+||.|.+++.+.+++. ...+.|.|+.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 56799999999999999999999999999999999999999999999999999999999998 48899999999999887
Q ss_pred CCCCC
Q 023583 191 VPRGG 195 (280)
Q Consensus 191 ~~~~~ 195 (280)
.+...
T Consensus 175 pk~~~ 179 (311)
T KOG4205|consen 175 PKEVM 179 (311)
T ss_pred chhhc
Confidence 55443
No 115
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.90 E-value=4.2e-09 Score=84.00 Aligned_cols=68 Identities=22% Similarity=0.383 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC-CCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.....++|+.+|..+.+.++..+|.++ |.|..+++-+++.||++||||||+|.+.+.|.-|-+.|||.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNY 115 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNY 115 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhh
Confidence 345689999999999999999999999 56666777799999999999999999999999999999984
No 116
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.7e-10 Score=88.50 Aligned_cols=66 Identities=33% Similarity=0.526 Sum_probs=63.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..++|||++|-..+++.-|...|-.||.|.+|.++.|-++++.||||||+|.-.|+|..|+..||+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMne 74 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNE 74 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCch
Confidence 357999999999999999999999999999999999999999999999999999999999999986
No 117
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.84 E-value=1.6e-08 Score=84.30 Aligned_cols=81 Identities=31% Similarity=0.612 Sum_probs=74.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
-..+|+|.|||+.+++++|+++|..||.+..+-+.+++ .|.+.|.|-|.|...+||..|++.++|..++|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34689999999999999999999999999999888887 89999999999999999999999999999999999998765
Q ss_pred CC
Q 023583 191 VP 192 (280)
Q Consensus 191 ~~ 192 (280)
..
T Consensus 161 ~~ 162 (243)
T KOG0533|consen 161 SP 162 (243)
T ss_pred Cc
Confidence 43
No 118
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1.3e-08 Score=87.09 Aligned_cols=76 Identities=25% Similarity=0.416 Sum_probs=67.4
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH-hhCCCcCCceeEEec
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL-FDGSQIGGRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~-l~g~~i~g~~l~v~~ 188 (280)
..-.+|||++|...++|.+|+++|.+||+|+.+.++.. +|+|||+|.+...|+.|... ++...|+|++|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 34578999999999999999999999999999999865 47999999999999998765 566678999999999
Q ss_pred CCC
Q 023583 189 PEV 191 (280)
Q Consensus 189 a~~ 191 (280)
...
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 876
No 119
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.81 E-value=1.9e-08 Score=82.62 Aligned_cols=82 Identities=26% Similarity=0.538 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
.....+||.|.|.-+++++-|.+.|.+|-.....++++|..||+++||+||.|.+..|+..|++.|+|+.++.|.|..+-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CC
Q 023583 189 PE 190 (280)
Q Consensus 189 a~ 190 (280)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 43
No 120
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.80 E-value=1.8e-08 Score=90.56 Aligned_cols=83 Identities=27% Similarity=0.434 Sum_probs=70.5
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
......+|||+|||.+++..+|+++|..||+|+...|......++..+||||+|.+...++.|+.. +...|+||++.|+
T Consensus 284 ~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 284 PRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred eeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 334556699999999999999999999999999988865443455559999999999999999996 7899999999998
Q ss_pred cCCC
Q 023583 188 FPEV 191 (280)
Q Consensus 188 ~a~~ 191 (280)
-...
T Consensus 363 ek~~ 366 (419)
T KOG0116|consen 363 EKRP 366 (419)
T ss_pred eccc
Confidence 6543
No 121
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1e-08 Score=80.40 Aligned_cols=63 Identities=24% Similarity=0.395 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..++|||+|||..+.+.+|.++|.+||.|..|.+...+ ....||||+|.+.-+|..||..-||
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdG 67 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDG 67 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccc
Confidence 46899999999999999999999999999999875332 3467999999999999999987766
No 122
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.76 E-value=2.4e-08 Score=64.68 Aligned_cols=44 Identities=34% Similarity=0.576 Sum_probs=38.7
Q ss_pred HHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 232 LRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 232 l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
|+++|++||.|..+.+..+. +|+|||+|.+.++|..|++.|||.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCC
Confidence 68899999999999987543 689999999999999999999984
No 123
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.74 E-value=3.1e-08 Score=80.29 Aligned_cols=64 Identities=27% Similarity=0.404 Sum_probs=58.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHH----HhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRD----AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~----~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+..+|||.||+..+..++|+. +|++||.|.+|...+ +.+.+|-|||.|.+.+.|..|+..|+|+
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gf 75 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGF 75 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCC
Confidence 344999999999999999988 999999999998864 5688999999999999999999999996
No 124
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.73 E-value=1.8e-07 Score=67.13 Aligned_cols=78 Identities=18% Similarity=0.334 Sum_probs=67.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHc--cCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC----CceeEE
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAE--AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG----GRTVKV 186 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~----g~~l~v 186 (280)
+||.|+|||...|.+.|.+++.. .|...-+.++.|-.++.+.|||||.|.+.+.+..-++.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999998876 366777888889889999999999999999999999999999986 355666
Q ss_pred ecCC
Q 023583 187 NFPE 190 (280)
Q Consensus 187 ~~a~ 190 (280)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 125
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.72 E-value=2e-08 Score=83.91 Aligned_cols=84 Identities=25% Similarity=0.497 Sum_probs=77.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+...+||+|+.+.+|.+++..+|+.||.|..+.+..++..|.++||+||+|.+.+.+..+++ |+|..|.|+.+.|
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~v 174 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEV 174 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccccee
Confidence 344567899999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred ecCCC
Q 023583 187 NFPEV 191 (280)
Q Consensus 187 ~~a~~ 191 (280)
.+...
T Consensus 175 t~~r~ 179 (231)
T KOG4209|consen 175 TLKRT 179 (231)
T ss_pred eeeee
Confidence 87553
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=1.4e-08 Score=96.32 Aligned_cols=148 Identities=19% Similarity=0.292 Sum_probs=121.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
.+....++||+|||+..+++.+|+..|..+|.|..|.|-+-+ .+...-||||.|.+...+-.|...+.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 344567899999999999999999999999999999996654 4555679999999999999999888888886655555
Q ss_pred ecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCC
Q 023583 187 NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266 (280)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~ 266 (280)
.+... .......+++++|...+....|...|..||.|..|.+-+ ..-|++|.|.+
T Consensus 446 glG~~-------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes 500 (975)
T KOG0112|consen 446 GLGQP-------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYES 500 (975)
T ss_pred ccccc-------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeeccc
Confidence 44321 122457899999999999999999999999999877642 23499999999
Q ss_pred HHHHHHHHHHhcCC
Q 023583 267 AEDLQSALDAMNGV 280 (280)
Q Consensus 267 ~e~A~~Al~~lnG~ 280 (280)
...|+.|...|-|+
T Consensus 501 ~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 501 PPAAQAATHDMRGA 514 (975)
T ss_pred CccchhhHHHHhcC
Confidence 99999999988774
No 127
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.67 E-value=2.1e-08 Score=90.71 Aligned_cols=74 Identities=26% Similarity=0.450 Sum_probs=67.0
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
...-..++|+|-|||..+++++|+.+|+.||+|+.|+.-+.. +|..||+|-+..+|+.|++.|++..|.|++|.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-----RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 344567899999999999999999999999999998775554 89999999999999999999999999998887
No 128
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=7.4e-08 Score=82.66 Aligned_cols=70 Identities=26% Similarity=0.328 Sum_probs=65.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 211 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++.+.|||--|..-++.+||.-+|+.||.|..|.+++|..+|.+--||||+|.+.+++.+|.-+|+++
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNv 304 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNV 304 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcce
Confidence 3456789999999999999999999999999999999999999999999999999999999999999874
No 129
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.54 E-value=1.8e-07 Score=78.06 Aligned_cols=65 Identities=31% Similarity=0.504 Sum_probs=61.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.+|+|.|||+.++++||+++|..||.+..+.+.+++ .|.+.|.|-|.|...++|.+|++.+||+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv 147 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGV 147 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCc
Confidence 4689999999999999999999999999999999887 8999999999999999999999999985
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.53 E-value=5.7e-07 Score=64.53 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=58.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC--CCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQ--PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++|.|+|+|...+.++|.+++... |....+.++.|..++.+.|||||-|.+++.|.+-.+.+||.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 589999999999999999998654 66777889999999999999999999999999999999884
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.47 E-value=2.5e-08 Score=87.25 Aligned_cols=139 Identities=22% Similarity=0.330 Sum_probs=109.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCC-CcCCceeEEecCCC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS-QIGGRTVKVNFPEV 191 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-~i~g~~l~v~~a~~ 191 (280)
..+|++||...++.++|..+|...-.-.+-.++. ..||+||.+.+...|.+|++.++|+ .+.|+++.|..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999998752111111111 2599999999999999999999987 58899999987654
Q ss_pred CCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEe-eeCCCCCCccEEEEEeCCHHHH
Q 023583 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVI-FERYTGRSRGFGFVTFETAEDL 270 (280)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~-~~~~~g~~kg~afV~f~~~e~A 270 (280)
++. ..+++-|+|+|....++-|..+...||.+..|..+ .+++ .-..-|+|.+.+.+
T Consensus 76 kkq-------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~ 132 (584)
T KOG2193|consen 76 KKQ-------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQH 132 (584)
T ss_pred HHH-------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHH
Confidence 322 13468899999999999999999999999998653 3332 33456889999999
Q ss_pred HHHHHHhcCC
Q 023583 271 QSALDAMNGV 280 (280)
Q Consensus 271 ~~Al~~lnG~ 280 (280)
+.|+.+|||.
T Consensus 133 ~~ai~kl~g~ 142 (584)
T KOG2193|consen 133 RQAIHKLNGP 142 (584)
T ss_pred HHHHHhhcch
Confidence 9999999983
No 132
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.46 E-value=1.6e-07 Score=81.56 Aligned_cols=162 Identities=12% Similarity=0.083 Sum_probs=115.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCC---CCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
...|.|.||.+.++.+++..+|...|.|..+.++.+... ......|||.|.+...+..|-- |.+.++-++-|.|..
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 348999999999999999999999999999999764322 3457899999999988776664 777887787777754
Q ss_pred CCCCCCCCc----------------CCCC----CC----ccCCCCC---------------CCCCCCeEEEcCCCCCCCH
Q 023583 189 PEVPRGGER----------------AAMG----PK----LQNSYQG---------------FVDSPHKIYAGNLGWGLTS 229 (280)
Q Consensus 189 a~~~~~~~~----------------~~~~----~~----~~~~~~~---------------~~~~~~~l~V~nLp~~~t~ 229 (280)
......... ...+ .. ....... ...-..+++|++|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 321110000 0000 00 0000000 0001257999999999999
Q ss_pred HHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 230 ~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
.++-++|..+|+|.+..+- .|...-+|.|.|....+...|+. ++|
T Consensus 166 ~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~g 210 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHG 210 (479)
T ss_pred hhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcc
Confidence 9999999999999887764 45556788899999999999987 444
No 133
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.44 E-value=4.3e-07 Score=84.39 Aligned_cols=78 Identities=29% Similarity=0.487 Sum_probs=70.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCC---CCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV---TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
+.+||+||+..+++..|...|..||+|..++|+.-+. ..+.+.+|||.|-+..|+.+|++.|+|+.+.++.+++.|.
T Consensus 175 TNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 175 TNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred cceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 4599999999999999999999999999999976553 2456889999999999999999999999999999999997
Q ss_pred C
Q 023583 190 E 190 (280)
Q Consensus 190 ~ 190 (280)
+
T Consensus 255 k 255 (877)
T KOG0151|consen 255 K 255 (877)
T ss_pred c
Confidence 5
No 134
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.42 E-value=3.8e-07 Score=85.52 Aligned_cols=60 Identities=22% Similarity=0.384 Sum_probs=55.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
.+++|||++|+..+++.||.++|+.||.|..|.++. ++|||||++....+|.+|+.+|++
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n 479 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSN 479 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhc
Confidence 347999999999999999999999999999999873 479999999999999999999975
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.37 E-value=8.1e-07 Score=82.42 Aligned_cols=162 Identities=13% Similarity=0.047 Sum_probs=114.9
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+.+.+-+.+.+++..+.+++++|..- .|-...+..+...+-..|-++|+|....++.+|++. +...+-.|.+.|..+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 34556677899999999999998753 355556666665555589999999999999999985 6677777888876543
Q ss_pred CCCCCC-------------cCCCCC-----Ccc----CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE-EEE
Q 023583 191 VPRGGE-------------RAAMGP-----KLQ----NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKV 247 (280)
Q Consensus 191 ~~~~~~-------------~~~~~~-----~~~----~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~-~~i 247 (280)
...... ....+. ... ....-......+|||..||..++..++.++|..--.|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 111000 000000 000 000111233579999999999999999999998888888 666
Q ss_pred eeeCCCCCCccEEEEEeCCHHHHHHHHH
Q 023583 248 IFERYTGRSRGFGFVTFETAEDLQSALD 275 (280)
Q Consensus 248 ~~~~~~g~~kg~afV~f~~~e~A~~Al~ 275 (280)
-+-+ +++.++.|||.|...+.+..|+.
T Consensus 468 t~~P-~~~~~~~afv~F~~~~a~~~a~~ 494 (944)
T KOG4307|consen 468 TRLP-TDLLRPAAFVAFIHPTAPLTASS 494 (944)
T ss_pred ccCC-cccccchhhheeccccccchhhh
Confidence 6555 78889999999999888877764
No 136
>PF12220 U1snRNP70_N: U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; InterPro: IPR022023 This domain is found in eukaryotes. This domain is about 90 amino acids in length. This domain is found associated with PF00076 from PFAM. This domain is part of U1 snRNP, which is the pre-mRNA binding protein of the penta-snRNP spliceosome complex. It extends over a distance of 180 A from its RNA binding domain, wraps around the core domain of U1 snRNP consisting of the seven Sm proteins and finally contacts U1-C, which is crucial for 5'-splice-site recognition.
Probab=98.35 E-value=1.2e-07 Score=68.11 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=27.0
Q ss_pred ecCCCCCcccCccCCCCCCCCccCCCCCC
Q 023583 25 TQIPTNHLPSLFKTKSPKPLKLEKAQNPS 53 (280)
Q Consensus 25 t~~~p~~l~~lf~~~p~~~~~~~~~~~~~ 53 (280)
|++|||||++||+||||++|++|+++.+.
T Consensus 2 t~~lPp~ll~LF~PRPPL~y~pP~d~~p~ 30 (94)
T PF12220_consen 2 TSKLPPNLLALFAPRPPLPYLPPIDYPPE 30 (94)
T ss_pred cCcCCHHHHHHcCCCCCCCCCCccccCcc
Confidence 78899999999999999999999998764
No 137
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.29 E-value=1.2e-06 Score=75.27 Aligned_cols=58 Identities=29% Similarity=0.429 Sum_probs=52.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
...+|||+||...+++.+|++.|.+||+|..++++.. +|+|||+|.+.+.|..|.++.
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~ 284 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKS 284 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhh
Confidence 3478999999999999999999999999999999855 569999999999999998765
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.23 E-value=1.7e-06 Score=72.34 Aligned_cols=65 Identities=22% Similarity=0.486 Sum_probs=61.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
....+||+|+.+.++.+++...|+.||.+..+.+..|...|.+|||+||+|.+.+.+..|+. |||
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~g 164 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDG 164 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCC
Confidence 45689999999999999999999999999999999999999999999999999999999999 887
No 139
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.22 E-value=4.8e-06 Score=67.45 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=56.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeee-CCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE-RYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~-~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||.+||.++..-+|..+|..|.+-+.+.+... +.....+-+|||.|.+..+|..|..+|||+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGv 100 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGV 100 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCe
Confidence 3589999999999999999999999988777766432 222345689999999999999999999996
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.20 E-value=2.1e-06 Score=77.42 Aligned_cols=62 Identities=27% Similarity=0.389 Sum_probs=54.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ 276 (280)
...|||+|||.+++.++|+++|..||.|+...|....-.++...||||+|.+.+.+..||++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A 349 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA 349 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc
Confidence 34599999999999999999999999999998877654455559999999999999999975
No 141
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.18 E-value=3.8e-06 Score=69.39 Aligned_cols=74 Identities=23% Similarity=0.365 Sum_probs=63.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCC--------CCceeE----EEEEECCHHHHHHHHHHhhCCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT--------DRSRGF----GFVTMGSVEEAKEAIRLFDGSQ 178 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~--------~~~~g~----afV~f~~~~~a~~a~~~l~g~~ 178 (280)
....||+++||+.++..-|+++|+.||.|-+|.+-....+ |.++++ |+|+|.+...|+.+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999999766544 333333 6799999999999999999999
Q ss_pred cCCcee
Q 023583 179 IGGRTV 184 (280)
Q Consensus 179 i~g~~l 184 (280)
|+|++-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999763
No 142
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.14 E-value=4.4e-06 Score=76.06 Aligned_cols=65 Identities=18% Similarity=0.368 Sum_probs=59.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
.+.|+|.+|...+.-.+|+.+|++||.|+-.+++.+.-+-..+.||||++.+.++|.+||.+||-
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHr 469 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHR 469 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhh
Confidence 46899999999999999999999999999999998876777789999999999999999999874
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.12 E-value=4.8e-06 Score=75.72 Aligned_cols=62 Identities=24% Similarity=0.277 Sum_probs=55.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
.+..+|+|-|||..+++++|.++|+.||+|..|+- +-..+|.+||+|-|.-+|++|+++||+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~ 134 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNR 134 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHH
Confidence 35679999999999999999999999999999664 445589999999999999999999986
No 144
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.06 E-value=1.6e-05 Score=68.43 Aligned_cols=64 Identities=13% Similarity=0.280 Sum_probs=58.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceE--------EEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--------~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
...|||.|||..+|-+++.++|++||.|.. |++.++. .|..||-|.+.|-..++..-|++.|++
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCc
Confidence 356999999999999999999999998865 7877777 599999999999999999999999987
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.04 E-value=3.4e-05 Score=53.02 Aligned_cols=70 Identities=29% Similarity=0.426 Sum_probs=47.8
Q ss_pred CeEEEeCCCCCCCHHHHH----HHHHccC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 113 ARLYVGNLPYSMTSSSLA----EVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~----~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
..|+|.|||.+.+...|+ .++..+| .|..| +.|.|+|-|.+.+.|..|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 368999999999877654 5555665 55554 14889999999999999999999999999999999
Q ss_pred cCCCC
Q 023583 188 FPEVP 192 (280)
Q Consensus 188 ~a~~~ 192 (280)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87533
No 146
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.02 E-value=2.5e-06 Score=68.92 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=59.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|+...++++-|.++|-+-|.|..+.|..+. .++.| ||||.|.+..+..-|++.+||.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~ 72 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGD 72 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccc
Confidence 35799999999999999999999999999999987766 67777 9999999999999999999984
No 147
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=6.2e-05 Score=68.71 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=64.2
Q ss_pred CCCCeEEEeCCCCCC--CH----HHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC-Cc
Q 023583 110 DEAARLYVGNLPYSM--TS----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GR 182 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~--te----~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~-g~ 182 (280)
.-...|+|.|+|--- .- .-|.++|+++|+|..+.+..+.. |..+||.|++|.+.++|+.|++.|||+.|+ .|
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 566789999998532 22 23567899999999999988874 459999999999999999999999999986 57
Q ss_pred eeEEec
Q 023583 183 TVKVNF 188 (280)
Q Consensus 183 ~l~v~~ 188 (280)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 777764
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=2e-05 Score=57.78 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=37.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
+.|+|.+++..++.++|++.|+.||.|.+|.+... -..|+|.|.+.+.|+.|++.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~ 57 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKL 57 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHH
Confidence 56899999999999999999999999999988643 237999999999999999876
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.94 E-value=4.5e-07 Score=85.91 Aligned_cols=161 Identities=15% Similarity=0.148 Sum_probs=121.3
Q ss_pred CCCeEEEeCCCCCCCHH-HHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 111 EAARLYVGNLPYSMTSS-SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~-~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
......+.++.+..... ..+..|..+|.|+.|++..........-++++++....+++.|.. ..|..+.++...|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCCC
Confidence 44556777777776665 568889999999999987533222223388899998888888887 4888999999999887
Q ss_pred CCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHH
Q 023583 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (280)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~ 269 (280)
+......... .........+++||+||+..+.+.+|...|..+|.+..+++......++.+|+|++.|...++
T Consensus 649 d~~~~~~~~k-------vs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~ 721 (881)
T KOG0128|consen 649 DAEEKEENFK-------VSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEH 721 (881)
T ss_pred CchhhhhccC-------cCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCc
Confidence 6443211111 001111234689999999999999999999999999888877666689999999999999999
Q ss_pred HHHHHHHhcC
Q 023583 270 LQSALDAMNG 279 (280)
Q Consensus 270 A~~Al~~lnG 279 (280)
+.+|+...++
T Consensus 722 ~~aaV~f~d~ 731 (881)
T KOG0128|consen 722 AGAAVAFRDS 731 (881)
T ss_pred hhhhhhhhhh
Confidence 9999976543
No 150
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.92 E-value=2.5e-05 Score=73.01 Aligned_cols=68 Identities=29% Similarity=0.465 Sum_probs=60.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeC---CCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER---YTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~---~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+..+.|||+||+..++++.|...|..||.|..++|+... +..+.+.||||-|-+..+|.+|++.|+|.
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~ 242 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI 242 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce
Confidence 345789999999999999999999999999999998654 23556789999999999999999999984
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.86 E-value=1.9e-05 Score=68.40 Aligned_cols=83 Identities=27% Similarity=0.411 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeE--------EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 180 (280)
.....+|||..||..+++.+|..+|.++|.|.. |.+.+++.|++++|-|.|.|.+...|+.|+..++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445568999999999999999999999998843 788899999999999999999999999999999999999
Q ss_pred CceeEEecCCC
Q 023583 181 GRTVKVNFPEV 191 (280)
Q Consensus 181 g~~l~v~~a~~ 191 (280)
|..|.|-.+..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99999977653
No 152
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.81 E-value=5.6e-05 Score=70.56 Aligned_cols=76 Identities=24% Similarity=0.312 Sum_probs=67.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
+.|-+.|+|++++-+||.++|..|-.+-.-.+++....|...|-|.|.|++.+.|..|...++++.|..|.|.+++
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4788999999999999999999998776555555556899999999999999999999999999999999998874
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.79 E-value=8.5e-05 Score=63.80 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=62.2
Q ss_pred CCCCeEEEeCCCCCCCHHH----H--HHHHHccCCeeEEEEeecCCC-CCceeE--EEEEECCHHHHHHHHHHhhCCCcC
Q 023583 110 DEAARLYVGNLPYSMTSSS----L--AEVFAEAGTVASAEIVYDRVT-DRSRGF--GFVTMGSVEEAKEAIRLFDGSQIG 180 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~----l--~~~F~~~G~i~~v~~~~~~~~-~~~~g~--afV~f~~~~~a~~a~~~l~g~~i~ 180 (280)
....-+||-+||..+-.++ | .++|.+||.|..|.+-+.... ....+. .||.|.+.++|..|+...+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 3456789999998876665 2 479999999998877543211 111222 399999999999999999999999
Q ss_pred CceeEEecCC
Q 023583 181 GRTVKVNFPE 190 (280)
Q Consensus 181 g~~l~v~~a~ 190 (280)
||-|+..+-.
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999998754
No 154
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.78 E-value=2.4e-05 Score=67.69 Aligned_cols=82 Identities=27% Similarity=0.493 Sum_probs=74.0
Q ss_pred CCCCeEE-EeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 110 DEAARLY-VGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~-V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
....++| |+++++.+++++|+.+|..+|.|..+++..+..++..+|||||.|........++.. ....+.|+.+.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3445666 999999999999999999999999999999999999999999999999999999987 88899999999987
Q ss_pred CCCC
Q 023583 189 PEVP 192 (280)
Q Consensus 189 a~~~ 192 (280)
....
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 6643
No 155
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.68 E-value=0.00011 Score=60.85 Aligned_cols=87 Identities=25% Similarity=0.304 Sum_probs=77.3
Q ss_pred HHHHHHHHhhCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEE
Q 023583 166 EAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA 245 (280)
Q Consensus 166 ~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~ 245 (280)
-|..|-..|++....|+.++|.++.. ..|+|.||...++-|.+.+.|+.||.|...
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~a 61 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------AELYVVNLMQGASNDLLEQAFRRFGPIERA 61 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------ceEEEEecchhhhhHHHHHhhhhcCccchh
Confidence 45667778999999999999998752 469999999999999999999999999988
Q ss_pred EEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 246 KVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 246 ~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
.+..|. .++..|-++|+|...-.|..|+..+
T Consensus 62 v~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 62 VAKVDD-RGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred eeeecc-cccccccchhhhhcchhHHHHHHHh
Confidence 877775 7888999999999999999999876
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.67 E-value=4e-05 Score=66.05 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=69.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccC--CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
...+|||||-|.+|+++|.+.....| .+..+++..++..|.++|||+|...+....++.++.|-.+.|+|..-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 34699999999999999999998877 578888999999999999999999999999999999999999998777643
No 157
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.58 E-value=5.2e-05 Score=62.19 Aligned_cols=74 Identities=32% Similarity=0.508 Sum_probs=64.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
......++|.+++..+.+.+|.+.|..+|.+....+ .++++||+|...++|..|+..++|..+.|+.|.+..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 344567899999999999999999999999844433 378999999999999999999999999999999955
Q ss_pred CC
Q 023583 189 PE 190 (280)
Q Consensus 189 a~ 190 (280)
..
T Consensus 168 ~~ 169 (216)
T KOG0106|consen 168 NS 169 (216)
T ss_pred cC
Confidence 43
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.58 E-value=0.00029 Score=51.63 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=43.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCC-----CcCCceeEEe
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS-----QIGGRTVKVN 187 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~-----~i~g~~l~v~ 187 (280)
..|+|.+++..++.++|+..|+.||.|..|.+.+. -.-|||-|.+.+.|+.|+..+.-. .|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46888899999999999999999999999988643 357899999999999999876543 4455555444
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.39 E-value=0.00019 Score=62.38 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=59.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceE--------EEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--------~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
...+|||-+||..+++++|.++|.++|.|.. |.|.++++|+..||-|.|.|.+...|+.|+.-++|
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc
Confidence 3468999999999999999999999998854 67788999999999999999999999999988775
No 160
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00062 Score=61.83 Aligned_cols=68 Identities=26% Similarity=0.309 Sum_probs=62.2
Q ss_pred cccCCCCCeEEEeCCCCCCCHHHHHHHHH-ccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 023583 106 VAASDEAARLYVGNLPYSMTSSSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (280)
Q Consensus 106 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 173 (280)
....++.+|||||+||.-++.++|..+|. -||-|..+-|=.|.+-+.++|-|-|.|.+-..-.+||..
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34567889999999999999999999999 599999999988987889999999999999999999984
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.17 E-value=0.00026 Score=58.76 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=56.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCC--------CCCc----cEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT--------GRSR----GFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~--------g~~k----g~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..||++|+|..+....|+++|..||.|-+|.+.....+ |.++ .-|+|+|.+...|.++...|||.
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 57999999999999999999999999999999766544 2222 34799999999999999999984
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.15 E-value=0.0014 Score=41.58 Aligned_cols=52 Identities=19% Similarity=0.355 Sum_probs=41.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHH
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAI 171 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 171 (280)
+.|-|.+.+.+..+ .+..+|..||+|..+.+. ....+.+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 46778888876654 455699999999998875 23578999999999999985
No 163
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.14 E-value=0.0024 Score=41.71 Aligned_cols=55 Identities=20% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccC---CCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQ---PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~---g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
+..|+|+|+. +++.++|+.+|..| .....|..+-|. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 3579999996 58999999999988 235667777554 4899999999999999875
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.06 E-value=0.0015 Score=41.48 Aligned_cols=52 Identities=15% Similarity=0.238 Sum_probs=40.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHH
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al 274 (280)
+.|-|.|.+.... +.+...|..||.|..+.+. ..+.+.+|+|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 4577888886655 4566688899999998875 22458999999999999986
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.04 E-value=0.00074 Score=61.92 Aligned_cols=63 Identities=16% Similarity=0.268 Sum_probs=52.9
Q ss_pred CeEEEcCCCCCC------CHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 216 HKIYAGNLGWGL------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 216 ~~l~V~nLp~~~------t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..|+|.|+|--- -..-|..+|+++|.++...++.+..+| .+||.|++|.+..+|+.|++.|||
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G 127 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNG 127 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhccc
Confidence 578888888421 223467889999999999998887555 899999999999999999999998
No 166
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.01 E-value=0.0033 Score=43.43 Aligned_cols=54 Identities=26% Similarity=0.333 Sum_probs=38.3
Q ss_pred CeEEEcCCCCCCCHHH----HHHHhccCCC-ceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 216 HKIYAGNLGWGLTSQG----LRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~----l~~~F~~~g~-v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..|+|.|||...+... |++++..+|+ |..+. .|.|+|.|.+.+.|.+|.+.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmeg 61 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEG 61 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcc
Confidence 3689999999887654 5677778866 33331 36799999999999999999987
No 167
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.99 E-value=0.0004 Score=57.72 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=52.4
Q ss_pred HHHHHHHH-ccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 127 SSLAEVFA-EAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 127 ~~l~~~F~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
++|..+|+ +||+|+.+.+..+. ...-+|-+||.|..+++|++|+..||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 45566666 89999999776543 33458999999999999999999999999999999998764
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.93 E-value=0.00094 Score=59.33 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=55.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeee---CCCCC----------CccEEEEEeCCHHHHHHHHHHhc
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE---RYTGR----------SRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~---~~~g~----------~kg~afV~f~~~e~A~~Al~~ln 278 (280)
+.++|.+.|||.+-..+.|.++|..+|.|..|+|... +.+++ .+-+|+|+|...+.|.+|.+.||
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 5689999999999999999999999999999999876 33222 25689999999999999999875
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.81 E-value=0.0009 Score=57.91 Aligned_cols=62 Identities=23% Similarity=0.433 Sum_probs=54.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC--CceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g--~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
.++||+||-|.+|++||.+....-| .+.+++++.+...|.+||||+|...+.....+.++.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiL 144 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEIL 144 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhc
Confidence 5799999999999999998887665 4677888888889999999999999999888887654
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.77 E-value=0.0045 Score=44.75 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=50.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEe-ecC------CCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV-YDR------VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~-~~~------~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
.+-|.|=+.|.. ....|.++|++||.|.+..-. ++. .......+-.|.|.+..+|.+|++. ||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 445777788877 556788899999999776411 110 0112357899999999999999995 9999998655
Q ss_pred E-EecC
Q 023583 185 K-VNFP 189 (280)
Q Consensus 185 ~-v~~a 189 (280)
. |.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 4 5544
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.73 E-value=0.0021 Score=57.16 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=59.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeec---CCC--CC--------ceeEEEEEECCHHHHHHHHHHhhC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD---RVT--DR--------SRGFGFVTMGSVEEAKEAIRLFDG 176 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~---~~~--~~--------~~g~afV~f~~~~~a~~a~~~l~g 176 (280)
-+.++|.+.|||.+-.-+.|.++|..+|.|+.|+|+.- ..+ +. .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999999888999999999999999999765 222 22 256799999999999999997754
Q ss_pred CCcCCceeEE
Q 023583 177 SQIGGRTVKV 186 (280)
Q Consensus 177 ~~i~g~~l~v 186 (280)
..-+-.-++|
T Consensus 309 e~~wr~glkv 318 (484)
T KOG1855|consen 309 EQNWRMGLKV 318 (484)
T ss_pred hhhhhhcchh
Confidence 4433333333
No 172
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.61 E-value=0.0061 Score=51.72 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=50.1
Q ss_pred HHHHHHHHHccCCeeEEEEeecCCCCCc-eeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 126 SSSLAEVFAEAGTVASAEIVYDRVTDRS-RGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 126 e~~l~~~F~~~G~i~~v~~~~~~~~~~~-~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
+.+++...++||.|.+|.|..+..-... .---||+|.+.++|.+|+=.|||..|+||.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 3456778899999999988776522221 23479999999999999999999999999887654
No 173
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.56 E-value=0.0059 Score=59.12 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=67.9
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC--ceeEE
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKV 186 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g--~~l~v 186 (280)
....+.+|+++|...+....|..+|..||+|..|.+- .| .-||+|.|++...++.|+..|.|..|+| ++++|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hg--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HG--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cC--CcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 4456789999999999999999999999999987763 22 4699999999999999999999999986 78999
Q ss_pred ecCCCC
Q 023583 187 NFPEVP 192 (280)
Q Consensus 187 ~~a~~~ 192 (280)
+++...
T Consensus 526 dla~~~ 531 (975)
T KOG0112|consen 526 DLASPP 531 (975)
T ss_pred ccccCC
Confidence 988644
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.46 E-value=0.0077 Score=46.30 Aligned_cols=74 Identities=27% Similarity=0.328 Sum_probs=52.6
Q ss_pred cCCCCCeEEEeCCC-----C-CCCH---HHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC
Q 023583 108 ASDEAARLYVGNLP-----Y-SMTS---SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (280)
Q Consensus 108 ~~~~~~~l~V~nLp-----~-~~te---~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 178 (280)
...+..||.|.=+. . ...+ .+|.+.|..||.+.-+|++. +.-+|+|.+-+.|-+|+. ++|..
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~~ 93 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGIQ 93 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCSE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCcE
Confidence 34456677776555 1 2222 35778889999998888873 457999999999999998 79999
Q ss_pred cCCceeEEecCC
Q 023583 179 IGGRTVKVNFPE 190 (280)
Q Consensus 179 i~g~~l~v~~a~ 190 (280)
+.|+.|.|....
T Consensus 94 v~g~~l~i~LKt 105 (146)
T PF08952_consen 94 VNGRTLKIRLKT 105 (146)
T ss_dssp ETTEEEEEEE--
T ss_pred ECCEEEEEEeCC
Confidence 999999998754
No 175
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.40 E-value=0.0036 Score=57.89 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=63.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHc-cCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCc---CCcee
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI---GGRTV 184 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i---~g~~l 184 (280)
....+.|+|.||-.-.|..+|+.++.. .|.|...+| | +-+..|||.|.+.++|......|||..| +++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 345778999999999999999999995 677777744 2 2367899999999999999999999998 57889
Q ss_pred EEecCC
Q 023583 185 KVNFPE 190 (280)
Q Consensus 185 ~v~~a~ 190 (280)
.++|..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 998864
No 176
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.25 E-value=0.015 Score=48.60 Aligned_cols=76 Identities=28% Similarity=0.337 Sum_probs=63.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhC----CCcCCceeEEec
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG----SQIGGRTVKVNF 188 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g----~~i~g~~l~v~~ 188 (280)
..|+|.||+.-+.-+.+...|..||+|....++.|. .++..|-++|.|...-.+.+|...+.- ....++..-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 679999999999999999999999999987776665 688899999999999999999987632 234567777755
Q ss_pred C
Q 023583 189 P 189 (280)
Q Consensus 189 a 189 (280)
.
T Consensus 111 ~ 111 (275)
T KOG0115|consen 111 M 111 (275)
T ss_pred h
Confidence 3
No 177
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.24 E-value=0.0047 Score=57.15 Aligned_cols=64 Identities=13% Similarity=0.216 Sum_probs=52.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhcc-CCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQG-QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 211 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++.|+|.||-.-+|.-+|+.++.. .|.|+.. ..| +.|..|||.|.+.++|...+.+|||+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV 504 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNV 504 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhcc
Confidence 4456789999999999999999999984 4555555 333 34678999999999999999999995
No 178
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.07 E-value=0.012 Score=50.89 Aligned_cols=65 Identities=12% Similarity=0.208 Sum_probs=49.8
Q ss_pred CCeEEEcCCCCCCCHHHH------HHHhccCCCceEEEEeeeCCC-CCCccE--EEEEeCCHHHHHHHHHHhcC
Q 023583 215 PHKIYAGNLGWGLTSQGL------RDAFQGQPGLLSAKVIFERYT-GRSRGF--GFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l------~~~F~~~g~v~~~~i~~~~~~-g~~kg~--afV~f~~~e~A~~Al~~lnG 279 (280)
.+-+||-+|+..+..+++ .++|.+||.|..|.+.+.... +..-+. .+|+|.+.++|.+||..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDg 187 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDG 187 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcc
Confidence 456899999988877662 478999999999988665422 122222 39999999999999999987
No 179
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.65 E-value=0.18 Score=37.11 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=51.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 180 (280)
....+.+...|+.++-.+|..+.+.+- .|..+++++|. ..++-.+.+.|.+..+|...++.+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344555666666677677766666553 57788888875 336778999999999999999999999875
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.39 E-value=0.14 Score=33.40 Aligned_cols=55 Identities=15% Similarity=0.140 Sum_probs=43.8
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHcc---CCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEA---GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF 174 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~---G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 174 (280)
...|+|.++ -+++.++|+.+|..| ....+|..+-|. -|-|.|.+.+.|.+|+..|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 357999998 458889999999999 134567777664 4889999999999999754
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.23 E-value=0.056 Score=39.11 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=41.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeC-------CCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER-------YTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~-------~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
+-|.|-+.|.. ....|.+.|++||.|.+..-.... .......+..|+|.++.+|.+||. -||
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG 75 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNG 75 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTT
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCC
Confidence 45777788876 677889999999999877511000 011235689999999999999997 555
No 182
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.22 E-value=0.043 Score=46.74 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=41.6
Q ss_pred HHHHHHHhccCCCceEEEEeeeCCCCCC-ccEEEEEeCCHHHHHHHHHHhcC
Q 023583 229 SQGLRDAFQGQPGLLSAKVIFERYTGRS-RGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 229 ~~~l~~~F~~~g~v~~~~i~~~~~~g~~-kg~afV~f~~~e~A~~Al~~lnG 279 (280)
++++++.+++||.|..|.|+.++..-.. ---.||+|...++|.+|+--|||
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnG 351 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNG 351 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCC
Confidence 5678999999999999999877533222 12479999999999999999998
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.22 E-value=0.12 Score=35.70 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=41.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 175 (280)
.+..+|+ .|......||.++|+.||.|. |..+.| .-|||...+.+.+..|++.+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 4456665 999999999999999999886 445533 369999999999999998764
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.95 E-value=0.19 Score=38.39 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=54.6
Q ss_pred CCCCCeEEEeCCCCCCCH-HH---HHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 109 SDEAARLYVGNLPYSMTS-SS---LAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te-~~---l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
..+-.||.|+=|..++.. +| +...++.||+|.+|.+. | +.-|.|.|++..+|-+|+..+.. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 445678889877766543 34 44566789999999774 3 56799999999999999998654 6677777
Q ss_pred EEecC
Q 023583 185 KVNFP 189 (280)
Q Consensus 185 ~v~~a 189 (280)
...|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 76653
No 185
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.87 E-value=0.025 Score=45.47 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=49.3
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHc-cCCe---eEEEEeecCCCC--CceeEEEEEECCHHHHHHHHHHhhCCCcCC--
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAE-AGTV---ASAEIVYDRVTD--RSRGFGFVTMGSVEEAKEAIRLFDGSQIGG-- 181 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i---~~v~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~i~g-- 181 (280)
.....|.|++||+.+||+++...+.. ++.. ..+.-....... ....-|||.|.+.+++......++|..+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999998886666 5554 333322222221 234569999999999999999999977643
Q ss_pred ---ceeEEecCC
Q 023583 182 ---RTVKVNFPE 190 (280)
Q Consensus 182 ---~~l~v~~a~ 190 (280)
....|+++-
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 234555554
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.55 E-value=0.055 Score=43.55 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=42.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcc-CCCc---eEEEEeeeC--CCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQG-QPGL---LSAKVIFER--YTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~i~~~~--~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..+|.|++||..+|++++++.+.. ++.- .++.-.... .....-..|+|.|.+.+++..-...++|
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g 77 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDG 77 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCC
Confidence 468999999999999999998776 5554 233211211 1122345799999999999988888887
No 187
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.09 E-value=0.27 Score=32.63 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 123 SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 123 ~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
.++-++++.-+..|+- .+| ..|+ .|| ||.|.+..+|++++...+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999963 333 3333 455 89999999999999999999888777654
No 188
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.96 E-value=0.069 Score=47.31 Aligned_cols=61 Identities=11% Similarity=0.053 Sum_probs=50.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCC---CCCccEEEEEeCCHHHHHHHHH
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT---GRSRGFGFVTFETAEDLQSALD 275 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~---g~~kg~afV~f~~~e~A~~Al~ 275 (280)
...|.|.||...++.++++.+|.-.|.|.++.++..... ......|||.|.+...+..|-.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh 70 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH 70 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh
Confidence 348999999999999999999999999999998764322 3446689999999988877654
No 189
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.88 E-value=0.79 Score=33.76 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=47.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccC-CCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.+...|+.++.++|..+.+.+ ..|..+++++|.. .++-.+.++|.+.+.|..=...+||-
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCC
Confidence 445555567777778887776665 4567788888753 35668999999999999999999983
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.71 E-value=0.36 Score=44.87 Aligned_cols=86 Identities=19% Similarity=0.223 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHhhCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhcc--CC
Q 023583 163 SVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQG--QP 240 (280)
Q Consensus 163 ~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~--~g 240 (280)
+.+-...+++..-+..++.+-.+|+... ..|.|.++-||..+-.++++.+|+. +.
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~-----------------------kRcIvilREIpettp~e~Vk~lf~~encP 202 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNH-----------------------KRCIVILREIPETTPIEVVKALFKGENCP 202 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCc-----------------------ceeEEEEeecCCCChHHHHHHHhccCCCC
Confidence 3445556666666666666666555322 3478899999999999999999974 67
Q ss_pred CceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 241 GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 241 ~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
.+..|.+-.+. -=||+|.+..+|+.|.+.|.
T Consensus 203 k~iscefa~N~-------nWyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 203 KVISCEFAHND-------NWYITFESDTDAQQAYKYLR 233 (684)
T ss_pred CceeeeeeecC-------ceEEEeecchhHHHHHHHHH
Confidence 78888876553 24999999999999998763
No 191
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.64 E-value=0.029 Score=48.70 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=60.0
Q ss_pred CCeEEEeCCCCCCCHHHH---HHHHHccCCeeEEEEeecCC--CC-CceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 112 AARLYVGNLPYSMTSSSL---AEVFAEAGTVASAEIVYDRV--TD-RSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l---~~~F~~~G~i~~v~~~~~~~--~~-~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
..-+||-+|+.....+.+ ..+|.+||.|..|.+-.+.. .+ ....-++|.|..+++|..||...+|...+|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356888889877655444 35899999999998877652 11 1122389999999999999999999999999977
Q ss_pred EecCC
Q 023583 186 VNFPE 190 (280)
Q Consensus 186 v~~a~ 190 (280)
..+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 66544
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.60 E-value=0.57 Score=42.50 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=59.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g 181 (280)
...|+|-.+|-.++--||..|...+- .|..+++++|. -.++=..+|.|.+..+|...++.+||+.+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999988754 68999999964 3346678899999999999999999998863
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.55 E-value=0.41 Score=33.19 Aligned_cols=54 Identities=9% Similarity=0.158 Sum_probs=39.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
...+|. .|..+...||.++|+.||.|- |..+-| .-|||...+.+.|..|+..++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 345555 999999999999999999875 443433 369999999999999887664
No 194
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.28 E-value=0.11 Score=46.46 Aligned_cols=58 Identities=24% Similarity=0.405 Sum_probs=45.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
+++|++||....+..+|..+|...-.-..-.++. ..||+||.+.+...|.+|++.++|
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhch
Confidence 4799999999999999999997541111111221 258999999999999999999987
No 195
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=0.87 Score=42.62 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=61.8
Q ss_pred ccCCCCCeEEEeCCCCC-CCHHHHHHHHHcc----CCeeEEEEeecCC----------CCC-------------------
Q 023583 107 AASDEAARLYVGNLPYS-MTSSSLAEVFAEA----GTVASAEIVYDRV----------TDR------------------- 152 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~~~~~~~----------~~~------------------- 152 (280)
......++|-|.|+.|+ +...+|..+|..| |.|.+|.|..... +|.
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567889999999997 7788999988876 5888888764331 121
Q ss_pred ------------------ceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 153 ------------------SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 153 ------------------~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
..=||.|+|.+...|.+.++.++|..+......++
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 12378899999999999999999999975544443
No 196
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.01 E-value=0.08 Score=49.95 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=83.5
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+..+|||+|+.+.+..+-++.....+|-|..+..+ -|||..|........|+..++...++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 44466799999999999999999999999988766543 299999999999999999899999999998887
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCC--CCeEEEcCCCCCCCHHHHHHHhccCC
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDS--PHKIYAGNLGWGLTSQGLRDAFQGQP 240 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~V~nLp~~~t~~~l~~~F~~~g 240 (280)
.-...-...... +............+ .+..+|+|+|....+......+..-+
T Consensus 107 ~d~q~~~n~~k~-~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~ 160 (668)
T KOG2253|consen 107 VDEQTIENADKE-KSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISS 160 (668)
T ss_pred chhhhhcCcccc-ccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccc
Confidence 632110000000 00001111111111 35678888888777776666665433
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.97 E-value=0.053 Score=49.13 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=59.0
Q ss_pred CCeEEEeCCCCCCC-HHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 112 AARLYVGNLPYSMT-SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 112 ~~~l~V~nLp~~~t-e~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
.+.+-+.-.|+..+ -.+|...|.+||.|..|.+-+. ---|.|+|.+..+|-.|+. .++..|++|.|+|.|..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 34455566666644 5789999999999999987433 3568999999999988987 69999999999999976
Q ss_pred C
Q 023583 191 V 191 (280)
Q Consensus 191 ~ 191 (280)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 198
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.54 E-value=0.047 Score=45.67 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=38.9
Q ss_pred HHHHHHhc-cCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 230 QGLRDAFQ-GQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 230 ~~l~~~F~-~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
+++...|+ +||+|+.+.|-.+. .-.-+|-++|.|...++|.+|++.|||
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnn 132 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNN 132 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcC
Confidence 45666666 99999998765433 334578899999999999999999997
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.36 E-value=0.37 Score=44.80 Aligned_cols=75 Identities=13% Similarity=0.266 Sum_probs=58.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHc--cCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhC--CCcCCc
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAE--AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG--SQIGGR 182 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~i~g~ 182 (280)
......+.|.++-||..+-+++++.+|.. +-++.+|.+-.+. + =||.|++..||+.|++.|.- +.|.|+
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------n-WyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------N-WYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------c-eEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 44455667889999999999999999976 6677888776553 2 48999999999999987753 456777
Q ss_pred eeEEec
Q 023583 183 TVKVNF 188 (280)
Q Consensus 183 ~l~v~~ 188 (280)
.|..++
T Consensus 243 pImARI 248 (684)
T KOG2591|consen 243 PIMARI 248 (684)
T ss_pred chhhhh
Confidence 766554
No 200
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.68 E-value=0.39 Score=38.88 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=45.8
Q ss_pred CHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh--CCCcCCceeEEecCC
Q 023583 125 TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVKVNFPE 190 (280)
Q Consensus 125 te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~i~g~~l~v~~a~ 190 (280)
....|+++|..|+.+..+..++. -+-..|.|.+.++|..|...++ +..+.|..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 34789999999999988877643 4568899999999999999999 999999999998874
No 201
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=90.66 E-value=0.6 Score=36.03 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=40.0
Q ss_pred CCCCeEEEcCCCC------CCCH---HHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGW------GLTS---QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~------~~t~---~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++..+|.|.-+.. ...+ ++|.+.|..||.+.=+|+.- +.-+|+|.+-++|.+|+. ++|.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg~ 92 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDGI 92 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCCS
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCCc
Confidence 3455666665541 2222 36778889999998888763 347999999999999997 7764
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.46 E-value=0.51 Score=40.57 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=50.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce-eEEecCC
Q 023583 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT-VKVNFPE 190 (280)
Q Consensus 114 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~-l~v~~a~ 190 (280)
=|-|-+.|..-. .-|..+|++||.|..... +....+-+|.|.+.-+|++|+.. +|+.|+|.- |-|..+.
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCT 268 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecC
Confidence 355556665433 456789999999976654 33467999999999999999996 999998854 4455544
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=89.95 E-value=0.85 Score=41.41 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccC-CCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~-g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
...|+|-.+|..++..||..|+..+ -.|..+++++|.. ..+=.+.|+|.+.++|..-.+.+||
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNG 137 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNG 137 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCC
Confidence 5789999999999999999998766 4689999999753 3345789999999999999999998
No 204
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.70 E-value=0.71 Score=35.38 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=43.9
Q ss_pred CCCCeEEEcCCCCCC----CHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 213 DSPHKIYAGNLGWGL----TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~----t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
.+..+|.|+=|...+ +-..+...++.||.|..|... |+ --|.|.|.+..+|-.|+.+++
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~ 146 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQ 146 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhc
Confidence 345678887655544 334455667899999999874 33 369999999999999998875
No 205
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=89.52 E-value=0.29 Score=42.66 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=48.2
Q ss_pred CeEEEcCCCCCCCHHHH---HHHhccCCCceEEEEeeeCC----CCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGL---RDAFQGQPGLLSAKVIFERY----TGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l---~~~F~~~g~v~~~~i~~~~~----~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+-+||-+|+..+..+.+ .+.|.+||.|..+....+.. .|..- -++|+|...++|..||...+|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~ 148 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGF 148 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhH
Confidence 45777788877655544 35789999999999888762 12222 2799999999999999998885
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.14 E-value=2.3 Score=28.76 Aligned_cols=58 Identities=19% Similarity=0.421 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHccCC-----eeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 123 SMTSSSLAEVFAEAGT-----VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 123 ~~te~~l~~~F~~~G~-----i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.++..+|..++...+. |-.|.+. ..|+||+-... .+..+++.|++..+.|+++.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4788889888887654 4556664 46899998754 788999999999999999999864
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=88.13 E-value=0.5 Score=33.26 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=46.9
Q ss_pred EEEEECCHHHHHHHHHHh-hCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHH
Q 023583 157 GFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDA 235 (280)
Q Consensus 157 afV~f~~~~~a~~a~~~l-~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~ 235 (280)
|.|+|.++.-|...++.- +...+++.++.|.........-.. -.-....+.++|.|.|||....+++|++.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k--------~qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQK--------FQVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceE--------EEEEEcccCCEEEEeCCCCCCChhhheee
Confidence 689999999999998741 223456777766653211110000 00011235679999999999999999987
Q ss_pred hc
Q 023583 236 FQ 237 (280)
Q Consensus 236 F~ 237 (280)
.+
T Consensus 73 Le 74 (88)
T PF07292_consen 73 LE 74 (88)
T ss_pred EE
Confidence 64
No 208
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=83.23 E-value=0.84 Score=44.61 Aligned_cols=70 Identities=33% Similarity=0.443 Sum_probs=57.8
Q ss_pred EEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCc--CCceeEEecCCC
Q 023583 116 YVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI--GGRTVKVNFPEV 191 (280)
Q Consensus 116 ~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i--~g~~l~v~~a~~ 191 (280)
.+.|.+-..+-.-|..++..||.|..++.+++. ..|.|+|...+.|..|...++|+.+ -|-+.+|..++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 334444466777899999999999999998774 7899999999999999999999875 477888887763
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=80.91 E-value=2 Score=40.97 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=50.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
..+..++||+|+.+.+..+-++.+...+|.|..+.... |||..|..+.-..+|+..++
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t 94 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLT 94 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhc
Confidence 34567999999999999999999999999998887652 89999999999999988764
No 210
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=79.12 E-value=16 Score=33.05 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=33.1
Q ss_pred ccccCCCCCeEEEeCCCCC-CCHHHHHHHHHcc----CCeeEEEEeec
Q 023583 105 KVAASDEAARLYVGNLPYS-MTSSSLAEVFAEA----GTVASAEIVYD 147 (280)
Q Consensus 105 ~~~~~~~~~~l~V~nLp~~-~te~~l~~~F~~~----G~i~~v~~~~~ 147 (280)
......+...|-|-|+.|+ +...+|...|+.| |.+..|.|...
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 3345778889999999987 7778898888875 57888887644
No 211
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=78.24 E-value=45 Score=28.96 Aligned_cols=165 Identities=12% Similarity=0.109 Sum_probs=97.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCC-------CCCceeEEEEEECCHHHHHHHHH----Hhh--CCCc
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV-------TDRSRGFGFVTMGSVEEAKEAIR----LFD--GSQI 179 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~-------~~~~~g~afV~f~~~~~a~~a~~----~l~--g~~i 179 (280)
|.|...|+..+++--.+-..|-+||+|++|.++.+.. ..+...-..+-|-+.+.+-..+. .|. ...+
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L 95 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKL 95 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhc
Confidence 4578889999998888999999999999999997761 12344667888988887665543 232 2345
Q ss_pred CCceeEEecCCCCCCC------CcCCCCC---CccCCCCCCCCCCCeEEEcCCCCCCCHHHH-HHH---hccCC----Cc
Q 023583 180 GGRTVKVNFPEVPRGG------ERAAMGP---KLQNSYQGFVDSPHKIYAGNLGWGLTSQGL-RDA---FQGQP----GL 242 (280)
Q Consensus 180 ~g~~l~v~~a~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l-~~~---F~~~g----~v 242 (280)
....|.+.+....... +...... ..-...-......+.|.|. +...+.++++ .+- +..-+ .+
T Consensus 96 ~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RYVl 174 (309)
T PF10567_consen 96 KSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRYVL 174 (309)
T ss_pred CCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceEEE
Confidence 6667777654422111 1111100 0000001112345667776 3344544443 222 22222 45
Q ss_pred eEEEEeeeCCC--CCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 243 LSAKVIFERYT--GRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 243 ~~~~i~~~~~~--g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
+.|.++..... .=++.||.+.|-+..-|...++.|.
T Consensus 175 EsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 175 ESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 66776644322 2357799999999999998887663
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=77.19 E-value=1.1 Score=43.85 Aligned_cols=57 Identities=28% Similarity=0.277 Sum_probs=49.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 217 ~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
+..+.|.+-..+-..|--+|..||.|...+-+++. ..|.|+|.+.++|..|+++|+|
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~g 356 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQG 356 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcC
Confidence 45556666677888899999999999999988774 4799999999999999999998
No 213
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=75.18 E-value=4 Score=31.50 Aligned_cols=118 Identities=11% Similarity=0.003 Sum_probs=75.3
Q ss_pred eEEEeCCC--CCCCHHHHHHHHHc-cCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 114 RLYVGNLP--YSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 114 ~l~V~nLp--~~~te~~l~~~F~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
...||.+. ...+-..|...+.. .+....+.+..- ..|+..+.|.+++++.++++. ....++|..+.+..-.
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhc
Confidence 34456553 34566677666655 344334444322 268999999999999999983 6667788777776543
Q ss_pred CCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCceEEEEe
Q 023583 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVI 248 (280)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~v~~~~i~ 248 (280)
........ .......=|.|.|||.. .+++-++.+.+.+|.+..+...
T Consensus 91 ~~~~~~~~-----------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 91 PDFNPSEV-----------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cccccccc-----------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 11110000 00011234778899977 6888899999999999887654
No 214
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=72.93 E-value=26 Score=30.24 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=35.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCe-eEEEEeecCCCCCceeEEEEEECCH
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSV 164 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~ 164 (280)
.-|+++|||.++.-.+|+..+.+-|-+ .++.+ ..++|-||+-|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 459999999999999999999987643 22332 23578899999764
No 215
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=72.89 E-value=6.1 Score=34.23 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=39.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHH
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~ 275 (280)
.=|.|-+.|.. .-.-|...|.+||.|++..-. ..-.+-.|.|.+..+|++||.
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs 250 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS 250 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh
Confidence 34666667654 335678889999999876643 334589999999999999996
No 216
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=72.08 E-value=27 Score=30.16 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=40.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH-------HHHHHHHHHhc
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA-------EDLQSALDAMN 278 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~-------e~A~~Al~~ln 278 (280)
..|+++||+.++.-.||+..+.+.+.+ ...+. .....|-||+.|.+. .++.+++..+|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~is----wkg~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECT-PMSIS----WKGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCC-ceeEe----eecCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 569999999999999999999877543 22322 123467899999654 34455555443
No 217
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=69.78 E-value=9.6 Score=25.38 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=44.9
Q ss_pred HHHHHHHHccC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 127 SSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 127 ~~l~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
++|++.|...| +|..+.-+..+.++.+...-||+.+...+...++ +=..+.|..+.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCC
Confidence 46788888887 6777777777767788888899988765544443 3356788889998654
No 218
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=69.33 E-value=7.9 Score=28.80 Aligned_cols=56 Identities=23% Similarity=0.378 Sum_probs=30.8
Q ss_pred eEEEeCCCCC---------CCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECC-HHHHHHHHH
Q 023583 114 RLYVGNLPYS---------MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS-VEEAKEAIR 172 (280)
Q Consensus 114 ~l~V~nLp~~---------~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~-~~~a~~a~~ 172 (280)
++.|-|++.. .+-+.|++.|..|.+++ ++.+.+. ..+.|++.|+|.. -..-..|++
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 4556666543 34578999999999875 6666665 3578999999975 334444554
No 219
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=69.00 E-value=11 Score=25.19 Aligned_cols=61 Identities=23% Similarity=0.346 Sum_probs=44.9
Q ss_pred HHHHHHHHccC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 127 SSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 127 ~~l~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
++|++.|...| ++..++-+..+.++.+...-+|+.....+... .++=+.++|+++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 47888899988 78888888887777778888888876544333 234456789999988654
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.57 E-value=21 Score=33.86 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=52.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccC----CCceEEEEeeeC----------CCCC---------------------
Q 023583 212 VDSPHKIYAGNLGWG-LTSQGLRDAFQGQ----PGLLSAKVIFER----------YTGR--------------------- 255 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~----g~v~~~~i~~~~----------~~g~--------------------- 255 (280)
...+++|-|-||.|. +...+|.-+|..| |.|..|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 446789999999996 6888998888755 578888774321 1121
Q ss_pred ----------------CccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 256 ----------------SRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 256 ----------------~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.--||.|+|.+.+.|....+.++|+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~ 291 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGI 291 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcc
Confidence 1238999999999999999999985
No 221
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=67.37 E-value=9.2 Score=28.19 Aligned_cols=45 Identities=22% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHhc---cCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 223 LGWGLTSQGLRDAFQ---GQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 223 Lp~~~t~~~l~~~F~---~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
-|+.+|..+++++|+ .|.+|.+-.+.+|.-...+-..||..|...
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 488999999999997 455565555555544444556788888754
No 222
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=63.33 E-value=33 Score=22.71 Aligned_cols=46 Identities=15% Similarity=0.352 Sum_probs=34.8
Q ss_pred CCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 226 GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 226 ~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.++-++++.-+..|+- . +|..|+ .| =||.|.+..+|.++....||.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~ 56 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGT 56 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecC-----CE-EEEEECChHHHHHHHHhcCCC
Confidence 4678899999998843 2 333333 23 389999999999999998884
No 223
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=57.60 E-value=23 Score=31.08 Aligned_cols=55 Identities=25% Similarity=0.289 Sum_probs=37.9
Q ss_pred EEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHh
Q 023583 157 GFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAF 236 (280)
Q Consensus 157 afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F 236 (280)
|||.|++..+|..|.+.+.... ++.+.+..+- ++..|.-.||.....+..++.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP-----------------------eP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP-----------------------EPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC-----------------------CcccccccccCCChHHHHHHHHH
Confidence 7999999999999999654433 2444555433 34568888887776666666554
No 224
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=55.58 E-value=1.8 Score=40.34 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=52.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..|.++++|++..++-.+|..+++.+..+..+.+-.+....+...+++|+|.-.-....|..+|||
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~ 295 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNG 295 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhh
Confidence 357899999999999999999999998888877655444455567889999876666666666665
No 225
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.97 E-value=5.7 Score=36.19 Aligned_cols=76 Identities=4% Similarity=-0.133 Sum_probs=59.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 114 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+-|+..+|-..++.++.-.|..||.|..+..-+....|...-.+|+.-.. .++..++..+.-..++|..++|.++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 45677899999999999999999999988887666667777788887764 45666776666677778888887764
No 226
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=44.80 E-value=52 Score=21.44 Aligned_cols=18 Identities=17% Similarity=0.447 Sum_probs=15.4
Q ss_pred HHHHHHHHccCCeeEEEE
Q 023583 127 SSLAEVFAEAGTVASAEI 144 (280)
Q Consensus 127 ~~l~~~F~~~G~i~~v~~ 144 (280)
.+||++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999986655
No 227
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=42.68 E-value=24 Score=31.65 Aligned_cols=69 Identities=19% Similarity=0.228 Sum_probs=47.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCC-eeEEEEeecCCC--CCceeEEEEEECCHHHHHHHHHHhhCCCc
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~~i 179 (280)
....|.|.+||...++.++..-...+-. +....+...... ..-.+.|||.|...+++..-...++|..+
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3457889999999999998877766532 222222211111 11267899999999998888887887764
No 228
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=42.31 E-value=4.6 Score=37.85 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=53.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 180 (280)
..++||++|++++++-++|..+...+--+..+-+-..........+++|.|+.--.+.-|+-.||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3467999999999999999999988765555554433323345677889999887888888888887764
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.25 E-value=84 Score=28.60 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCc-eEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGL-LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v-~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ 276 (280)
-.+.|-|.+.|...-.+||...|..|+.- -+|.++-|. .||-.|.+...|..||-.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 45789999999999999999999999653 455555443 689999999999998853
No 230
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=41.92 E-value=1.2e+02 Score=21.14 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=41.0
Q ss_pred EEeCCCCCCCHHHHHHHHHc-cC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 023583 116 YVGNLPYSMTSSSLAEVFAE-AG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (280)
Q Consensus 116 ~V~nLp~~~te~~l~~~F~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 173 (280)
|+-.....++..+|++.++. || .|..|+..... ...--|||.+....+|......
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 33457789999999999998 66 67777776554 2345699999988888776554
No 231
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.63 E-value=1.1e+02 Score=27.91 Aligned_cols=58 Identities=24% Similarity=0.272 Sum_probs=46.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCC-eeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 173 (280)
.+-.+.|-|-+.|.....+||...|+.|+. --+|.++-| -.||..|.+...|..|+..
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 344678999999999999999999999974 344555544 4689999999999999873
No 232
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=38.88 E-value=17 Score=32.89 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=47.5
Q ss_pred CeEEEcCCCCCCCH--------HHHHHHhcc--CCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHH
Q 023583 216 HKIYAGNLGWGLTS--------QGLRDAFQG--QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275 (280)
Q Consensus 216 ~~l~V~nLp~~~t~--------~~l~~~F~~--~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~ 275 (280)
+.+|+.+.+..... +++...|.. ++.+..++.-++.....++|..|++|.....|++.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45666666665444 489999998 6778888877777677889999999999999998873
No 233
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.15 E-value=39 Score=29.04 Aligned_cols=72 Identities=17% Similarity=0.412 Sum_probs=45.8
Q ss_pred cCCCCCeEEEeCCCCC------------CCHHHHHHHHHccCCeeEEEEee-c----CCCCCc-----eeEE--------
Q 023583 108 ASDEAARLYVGNLPYS------------MTSSSLAEVFAEAGTVASAEIVY-D----RVTDRS-----RGFG-------- 157 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~------------~te~~l~~~F~~~G~i~~v~~~~-~----~~~~~~-----~g~a-------- 157 (280)
+..-..||++.+||-. -++..|+..|+.||.|..|.|+. | ..+|+. .||+
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 3445668999999842 35778999999999999988742 2 223433 3443
Q ss_pred -EEEECCHHHHHHHHHHhhCCCc
Q 023583 158 -FVTMGSVEEAKEAIRLFDGSQI 179 (280)
Q Consensus 158 -fV~f~~~~~a~~a~~~l~g~~i 179 (280)
||+|..-.....|+..|.|..+
T Consensus 225 ayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcchH
Confidence 3444444455566666666554
No 234
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=36.01 E-value=1.4e+02 Score=21.48 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHc-cCCeeEEEEeecCCC----CCceeEEEEEECCHHHHHH
Q 023583 123 SMTSSSLAEVFAE-AGTVASAEIVYDRVT----DRSRGFGFVTMGSVEEAKE 169 (280)
Q Consensus 123 ~~te~~l~~~F~~-~G~i~~v~~~~~~~~----~~~~g~afV~f~~~~~a~~ 169 (280)
+.+..+|+.-+.. |+.=.+..++..-.| |++.|||.| |.+.+.|++
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 4666777766654 664333333333222 567888887 677766554
No 235
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=34.54 E-value=1.5e+02 Score=20.21 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=40.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHc-cC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 023583 115 LYVGNLPYSMTSSSLAEVFAE-AG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (280)
Q Consensus 115 l~V~nLp~~~te~~l~~~F~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 173 (280)
-|+-.++.+++..+|++.++. || .|..|+....+ ...--|||.+.....|......
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 344467889999999999988 56 56777766554 2345699999888877765543
No 236
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.50 E-value=69 Score=22.09 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.4
Q ss_pred ceeEEEEEECCHHHHHHHHHHhhC
Q 023583 153 SRGFGFVTMGSVEEAKEAIRLFDG 176 (280)
Q Consensus 153 ~~g~afV~f~~~~~a~~a~~~l~g 176 (280)
-+||-|||=.++.++..|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 589999999999999999986544
No 237
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=32.06 E-value=93 Score=27.11 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=44.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeC-------CCCCCccEEEEEeCCHHHHH
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER-------YTGRSRGFGFVTFETAEDLQ 271 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~-------~~g~~kg~afV~f~~~e~A~ 271 (280)
.+.|.+.|+...++-..+..-|-+||.|+.|.++.+. ...+..-...+.|-+.+.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CL 78 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICL 78 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHH
Confidence 4678899999999989999999999999999998765 11223346788888887654
No 238
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=31.68 E-value=19 Score=32.54 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCCCeEEEeCCCCCCCHH--------HHHHHHHc--cCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHH
Q 023583 110 DEAARLYVGNLPYSMTSS--------SLAEVFAE--AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIR 172 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~--------~l~~~F~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 172 (280)
...+.+|+.+........ ++...|.. .+++..++..++.....++|--|++|+..+.+++...
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 345667777777655544 88999998 6788899998888778889999999999999988874
No 239
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.72 E-value=77 Score=21.86 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=21.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 255 RSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 255 ~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..+||-||+=.+..+...|++.+-+
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred CCceEEEEEeCCHHHHHHHHhcccc
Confidence 4699999999999999999987654
No 240
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=28.71 E-value=20 Score=33.13 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=39.2
Q ss_pred CeEEEcCCCCCC-CHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHH
Q 023583 216 HKIYAGNLGWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274 (280)
Q Consensus 216 ~~l~V~nLp~~~-t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al 274 (280)
+.|-+.-.++.. +-.+|...|.+||.|..|.+-+.. -.|.|+|.+..+|..|-
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY 426 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchh
Confidence 344444455554 567899999999999999985542 25899999999986664
No 241
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.16 E-value=57 Score=28.08 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=27.2
Q ss_pred CCCeEEEcCCCCC------------CCHHHHHHHhccCCCceEEEEe
Q 023583 214 SPHKIYAGNLGWG------------LTSQGLRDAFQGQPGLLSAKVI 248 (280)
Q Consensus 214 ~~~~l~V~nLp~~------------~t~~~l~~~F~~~g~v~~~~i~ 248 (280)
.+.+|++.+||-. .+++.|+..|..||.|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3457888888743 4678899999999999888774
No 242
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=25.78 E-value=1.1e+02 Score=21.78 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=17.1
Q ss_pred ceEEEEeeeCCCCCCccEEEEEeCC
Q 023583 242 LLSAKVIFERYTGRSRGFGFVTFET 266 (280)
Q Consensus 242 v~~~~i~~~~~~g~~kg~afV~f~~ 266 (280)
|.++++.+-...|+-||+|-|+|.+
T Consensus 3 ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 3 VTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred EEEEEEEEeCCCCcEEEEEEEEECC
Confidence 5666665554457778888888765
No 243
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=25.64 E-value=1.2e+02 Score=20.06 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=39.8
Q ss_pred eEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 023583 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234 (280)
Q Consensus 155 g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~ 234 (280)
.+.+|.|.+..+|.+|-+.|....+.++-+-+-. ....+|-+-++ ++. -+.+.+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P~----------------------~i~~~CG~al~-~~~-~d~~~i~~ 57 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPTPR----------------------EISAGCGLALR-FEP-EDLEKIKE 57 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCCCh----------------------hccCCCCEEEE-ECh-hhHHHHHH
Confidence 4789999999999999998876666444332211 11234555554 222 56777888
Q ss_pred HhccCC
Q 023583 235 AFQGQP 240 (280)
Q Consensus 235 ~F~~~g 240 (280)
+++..|
T Consensus 58 ~l~~~~ 63 (73)
T PF11823_consen 58 ILEENG 63 (73)
T ss_pred HHHHCC
Confidence 887664
No 244
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=24.27 E-value=2.1e+02 Score=25.19 Aligned_cols=80 Identities=9% Similarity=0.072 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE
Q 023583 165 EEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS 244 (280)
Q Consensus 165 ~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~ 244 (280)
.+...++..++-..++|--+.+.++..+-........-.....-...++....+--.-+=..+++++|-.+|..||+...
T Consensus 83 ~~l~~~l~~~~i~~vDGiL~DLGVSS~QLD~~eRGFSf~~d~pLDMRMd~~~~lsA~evvN~~~e~~L~~I~~~yGEEr~ 162 (314)
T COG0275 83 ANLAEALKELGIGKVDGILLDLGVSSPQLDDAERGFSFRKDGPLDMRMDQTQGLSAAEVVNTYSEEDLARIFKEYGEERF 162 (314)
T ss_pred HHHHHHHHhcCCCceeEEEEeccCCccccCCCcCCcccCCCCCcccCcCCCCCCCHHHHHhcCCHHHHHHHHHHhccHhh
Confidence 45555565555556777777776665443322222111111111112222222222122236889999999999997654
No 245
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=23.12 E-value=78 Score=25.52 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=50.3
Q ss_pred CCCeEEEeCCCCCCCHH-----HHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCc-ee
Q 023583 111 EAARLYVGNLPYSMTSS-----SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR-TV 184 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~-----~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~-~l 184 (280)
-..++.+.+++..+-.. ....+|..|.+..-.+++ ++.+.--|.|.+...|..|...+++..+.|+ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l------rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL------RSFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH------HhhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 34567777777654322 234566666555444443 2356677899999999999999999999988 67
Q ss_pred EEecCC
Q 023583 185 KVNFPE 190 (280)
Q Consensus 185 ~v~~a~ 190 (280)
...++.
T Consensus 83 k~yfaQ 88 (193)
T KOG4019|consen 83 KLYFAQ 88 (193)
T ss_pred EEEEcc
Confidence 766655
No 246
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=22.93 E-value=1.1e+02 Score=26.31 Aligned_cols=34 Identities=24% Similarity=0.366 Sum_probs=25.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEe
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~ 145 (280)
.....|+||||.++-.-|.+++...-.+....++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 4467799999999999999998886555444443
No 247
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.48 E-value=1.8e+02 Score=27.53 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=49.2
Q ss_pred cCCCCCeEEEeCCCCCCCH---HHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 108 ASDEAARLYVGNLPYSMTS---SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te---~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
.+.+..-=+||||+.-... ..+.++=.+||+|-.+++-.. -.|.-.+.+.|+.|+.. ++..+.+|..
T Consensus 28 PPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 28 PPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 3344455678998764433 456666678999998887322 36788899999999986 8999999886
No 248
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=22.10 E-value=2.8e+02 Score=21.10 Aligned_cols=46 Identities=15% Similarity=0.345 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHc-cC-CeeEEEEeecC----CCCCceeEEEEEECCHHHHHH
Q 023583 123 SMTSSSLAEVFAE-AG-TVASAEIVYDR----VTDRSRGFGFVTMGSVEEAKE 169 (280)
Q Consensus 123 ~~te~~l~~~F~~-~G-~i~~v~~~~~~----~~~~~~g~afV~f~~~~~a~~ 169 (280)
..+..+|++-+.. |+ .=.+..++..- -.|++.|||.| |.+.+.+.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5667788877765 55 22222222222 13578888887 666665543
No 249
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=21.65 E-value=2e+02 Score=20.14 Aligned_cols=47 Identities=23% Similarity=0.371 Sum_probs=30.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEE
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTM 161 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f 161 (280)
..-||||+++..+.|.-.....+..+.-.-+-+..+. + ..||+|-..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~--n-eqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN--N-EQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC--C-CCCEEEEEe
Confidence 4469999999888776655555554444433333332 2 679998877
No 250
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=21.49 E-value=1.4e+02 Score=20.75 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=18.6
Q ss_pred ceEEEEeeeCCCCCCccEEEEEeCC
Q 023583 242 LLSAKVIFERYTGRSRGFGFVTFET 266 (280)
Q Consensus 242 v~~~~i~~~~~~g~~kg~afV~f~~ 266 (280)
|.++++..-...|+-+|+|=|.|.+
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 5667776655558889999988876
No 251
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=20.64 E-value=34 Score=22.64 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=27.2
Q ss_pred HHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 230 ~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
++|++.|..+.....+.-+ .+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL----------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL----------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh----------hhccCCCCHHHHHHHHHHhh
Confidence 6788888765444433222 48999999999988887653
No 252
>PRK11901 hypothetical protein; Reviewed
Probab=20.24 E-value=2.8e+02 Score=24.61 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred EEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEE--eCCHHHHHHHHHHh
Q 023583 219 YAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVT--FETAEDLQSALDAM 277 (280)
Q Consensus 219 ~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~--f~~~e~A~~Al~~l 277 (280)
|.--|--.-.++.|..|..+++ +..+.+..-...|+.. |..|. |.+.++|..|+..|
T Consensus 246 YTLQL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sL 304 (327)
T PRK11901 246 YTLQLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATL 304 (327)
T ss_pred eEEEeecCCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhC
No 253
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=20.07 E-value=86 Score=18.01 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHHHccC
Q 023583 122 YSMTSSSLAEVFAEAG 137 (280)
Q Consensus 122 ~~~te~~l~~~F~~~G 137 (280)
-++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578899999998754
Done!