Query 023583
Match_columns 280
No_of_seqs 299 out of 2368
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 1.6E-34 5.4E-39 239.9 18.2 156 108-280 11-166 (213)
2 1fxl_A Paraneoplastic encephal 100.0 7.6E-34 2.6E-38 225.8 20.8 152 112-280 2-153 (167)
3 1b7f_A Protein (SXL-lethal pro 100.0 7.2E-34 2.5E-38 226.5 19.9 153 111-280 2-154 (168)
4 3md3_A Nuclear and cytoplasmic 100.0 1.1E-33 3.9E-38 224.6 19.8 152 113-280 1-152 (166)
5 1l3k_A Heterogeneous nuclear r 100.0 4.4E-33 1.5E-37 227.5 19.5 159 108-279 9-167 (196)
6 3nmr_A Cugbp ELAV-like family 100.0 6.6E-33 2.3E-37 222.2 20.0 153 111-280 2-159 (175)
7 2qfj_A FBP-interacting repress 100.0 2.3E-33 7.9E-38 232.6 15.8 164 111-280 27-190 (216)
8 3tyt_A Heterogeneous nuclear r 100.0 2.9E-32 9.8E-37 224.7 18.3 164 110-280 2-188 (205)
9 2cjk_A Nuclear polyadenylated 100.0 4.8E-33 1.6E-37 221.6 10.3 149 111-279 2-150 (167)
10 2yh0_A Splicing factor U2AF 65 100.0 4.3E-32 1.5E-36 222.0 12.6 164 110-280 2-179 (198)
11 2g4b_A Splicing factor U2AF 65 100.0 4.5E-31 1.6E-35 211.1 17.1 147 110-280 2-159 (172)
12 3smz_A Protein raver-1, ribonu 100.0 2.1E-30 7.3E-35 223.9 21.0 157 109-280 92-249 (284)
13 3pgw_A U1-A; protein-RNA compl 100.0 6.7E-30 2.3E-34 220.5 20.0 165 108-280 5-267 (282)
14 2adc_A Polypyrimidine tract-bi 100.0 1.2E-29 4.3E-34 212.6 21.0 163 108-280 30-212 (229)
15 3sde_A Paraspeckle component 1 100.0 2.8E-30 9.7E-35 220.7 17.1 142 108-279 18-159 (261)
16 1fje_B Nucleolin RBD12, protei 100.0 3.8E-31 1.3E-35 212.4 10.7 151 107-279 8-158 (175)
17 1qm9_A Polypyrimidine tract-bi 100.0 1.3E-29 4.3E-34 207.6 17.6 160 111-280 2-181 (198)
18 2ghp_A U4/U6 snRNA-associated 100.0 5.8E-30 2E-34 222.0 15.8 159 110-280 115-276 (292)
19 3smz_A Protein raver-1, ribonu 100.0 6.5E-30 2.2E-34 220.8 15.7 141 110-280 20-160 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-29 4.5E-34 219.7 16.7 148 105-280 34-182 (292)
21 3pgw_S U1-70K; protein-RNA com 99.9 1.3E-23 4.5E-28 191.1 14.4 167 25-192 2-182 (437)
22 4f25_A Polyadenylate-binding p 99.9 3.5E-23 1.2E-27 154.7 11.2 110 111-231 4-113 (115)
23 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-21 3.7E-26 154.8 13.8 134 141-280 2-135 (158)
24 4fxv_A ELAV-like protein 1; RN 99.9 1.2E-21 4E-26 142.4 11.5 81 110-190 17-97 (99)
25 3s8s_A Histone-lysine N-methyl 99.8 1.4E-20 4.8E-25 139.3 11.8 82 110-191 4-85 (110)
26 2lxi_A RNA-binding protein 10; 99.8 3.9E-21 1.3E-25 137.5 7.2 82 112-193 1-84 (91)
27 2lkz_A RNA-binding protein 5; 99.8 9.2E-21 3.1E-25 136.4 7.2 81 110-190 7-93 (95)
28 2dnz_A Probable RNA-binding pr 99.8 1.4E-19 4.8E-24 130.3 13.0 85 110-194 3-87 (95)
29 3p5t_L Cleavage and polyadenyl 99.8 2.7E-20 9.1E-25 132.8 8.7 80 113-192 2-83 (90)
30 2dgo_A Cytotoxic granule-assoc 99.8 2.6E-19 9E-24 133.5 14.5 89 107-195 10-98 (115)
31 3bs9_A Nucleolysin TIA-1 isofo 99.8 7E-20 2.4E-24 129.6 10.8 82 110-191 4-85 (87)
32 2i2y_A Fusion protein consists 99.8 5.4E-20 1.9E-24 143.8 10.5 123 151-280 10-133 (150)
33 3mdf_A Peptidyl-prolyl CIS-tra 99.8 7.3E-20 2.5E-24 128.9 10.1 82 109-190 4-85 (85)
34 3md1_A Nuclear and cytoplasmic 99.8 1.4E-19 4.8E-24 126.9 11.4 80 113-192 2-81 (83)
35 1whw_A Hypothetical protein ri 99.8 1.6E-19 5.6E-24 131.0 11.7 87 108-194 4-90 (99)
36 2hvz_A Splicing factor, argini 99.8 1E-19 3.6E-24 132.5 10.7 101 113-225 1-101 (101)
37 2x1f_A MRNA 3'-END-processing 99.8 1.2E-19 4E-24 131.0 10.8 83 111-193 1-83 (96)
38 2dgs_A DAZ-associated protein 99.8 2.2E-19 7.6E-24 130.3 12.4 86 108-194 6-91 (99)
39 2fy1_A RNA-binding motif prote 99.8 3.8E-19 1.3E-23 132.9 13.9 85 109-194 4-88 (116)
40 2cq0_A Eukaryotic translation 99.8 1.2E-19 4.1E-24 132.7 10.9 88 107-194 10-97 (103)
41 1p27_B RNA-binding protein 8A; 99.8 1.7E-19 5.9E-24 132.5 11.8 85 107-191 18-102 (106)
42 2la6_A RNA-binding protein FUS 99.8 2.3E-19 7.8E-24 130.2 12.2 84 107-190 8-99 (99)
43 2cpz_A CUG triplet repeat RNA- 99.8 2.6E-19 8.9E-24 133.6 12.5 86 109-194 22-107 (115)
44 2do4_A Squamous cell carcinoma 99.8 3.6E-19 1.2E-23 129.4 12.7 86 107-193 12-97 (100)
45 2jrs_A RNA-binding protein 39; 99.8 2.8E-19 9.7E-24 131.9 12.1 86 107-192 21-106 (108)
46 2cpf_A RNA binding motif prote 99.8 2.3E-19 7.9E-24 129.9 11.4 85 110-194 3-90 (98)
47 1x5s_A Cold-inducible RNA-bind 99.8 2.1E-19 7.3E-24 131.0 11.3 87 108-194 8-94 (102)
48 1x5u_A Splicing factor 3B subu 99.8 3E-19 1E-23 131.0 12.1 87 107-193 10-96 (105)
49 2dnm_A SRP46 splicing factor; 99.8 1.5E-19 5.1E-24 132.2 10.4 88 107-194 8-95 (103)
50 2cqc_A Arginine/serine-rich sp 99.8 2E-19 7E-24 129.4 10.9 84 107-190 10-93 (95)
51 1x5t_A Splicing factor 3B subu 99.8 1.6E-19 5.5E-24 130.2 10.1 85 110-194 3-88 (96)
52 3ns6_A Eukaryotic translation 99.8 5.9E-20 2E-24 133.7 7.6 80 111-190 5-91 (100)
53 2dnh_A Bruno-like 5, RNA bindi 99.8 6.8E-19 2.3E-23 129.1 13.4 85 109-194 12-99 (105)
54 1x4h_A RNA-binding protein 28; 99.8 4.7E-19 1.6E-23 131.2 12.4 88 107-194 10-103 (111)
55 2cph_A RNA binding motif prote 99.8 5.6E-19 1.9E-23 129.9 12.6 88 107-194 10-99 (107)
56 2dgp_A Bruno-like 4, RNA bindi 99.8 3.9E-19 1.3E-23 130.6 11.6 88 107-194 8-98 (106)
57 1oo0_B CG8781-PA, drosophila Y 99.8 2E-19 6.9E-24 133.0 10.1 86 107-192 21-106 (110)
58 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2E-19 6.7E-24 131.3 9.8 88 108-195 8-95 (102)
59 2d9p_A Polyadenylate-binding p 99.8 6.3E-19 2.1E-23 128.8 12.5 86 107-194 10-95 (103)
60 2dhg_A TRNA selenocysteine ass 99.8 8.3E-19 2.9E-23 128.3 12.9 86 108-194 5-92 (104)
61 1u6f_A Tcubp1, RNA-binding pro 99.8 8.1E-19 2.8E-23 135.3 13.3 88 108-195 38-125 (139)
62 2kxn_B Transformer-2 protein h 99.8 3.4E-19 1.2E-23 135.6 10.9 87 107-193 41-127 (129)
63 2e5h_A Zinc finger CCHC-type a 99.8 2.2E-19 7.6E-24 128.9 9.2 83 108-190 12-94 (94)
64 3s7r_A Heterogeneous nuclear r 99.8 4.2E-19 1.4E-23 125.6 10.4 82 107-189 6-87 (87)
65 2div_A TRNA selenocysteine ass 99.8 4.3E-19 1.5E-23 128.7 10.6 85 108-192 5-94 (99)
66 2dng_A Eukaryotic translation 99.8 7.3E-19 2.5E-23 128.5 11.9 86 107-194 10-95 (103)
67 3lqv_A PRE-mRNA branch site pr 99.8 9.7E-20 3.3E-24 135.9 7.2 106 108-241 4-109 (115)
68 3ucg_A Polyadenylate-binding p 99.8 5.1E-19 1.7E-23 125.7 10.6 80 112-192 6-85 (89)
69 4a8x_A RNA-binding protein wit 99.8 3.7E-19 1.3E-23 126.1 9.5 82 111-192 3-85 (88)
70 1s79_A Lupus LA protein; RRM, 99.8 2.8E-19 9.7E-24 130.6 9.0 79 110-190 9-87 (103)
71 2cpe_A RNA-binding protein EWS 99.8 5.9E-19 2E-23 131.2 10.9 87 108-194 11-105 (113)
72 2ywk_A Putative RNA-binding pr 99.8 5.8E-19 2E-23 127.0 10.4 82 108-190 12-93 (95)
73 3n9u_C Cleavage and polyadenyl 99.8 5.4E-19 1.8E-23 138.9 11.1 80 111-190 54-135 (156)
74 2do0_A HnRNP M, heterogeneous 99.8 2.8E-18 9.7E-23 127.6 14.1 87 107-194 10-96 (114)
75 1wi8_A EIF-4B, eukaryotic tran 99.8 7.9E-19 2.7E-23 128.5 10.6 86 108-195 11-97 (104)
76 2mss_A Protein (musashi1); RNA 99.8 3.2E-19 1.1E-23 122.6 7.7 75 114-189 1-75 (75)
77 1p1t_A Cleavage stimulation fa 99.8 7.8E-19 2.7E-23 128.5 10.2 83 111-193 7-89 (104)
78 1x4e_A RNA binding motif, sing 99.8 2.1E-19 7E-24 126.7 6.8 82 109-190 2-83 (85)
79 2cqd_A RNA-binding region cont 99.8 1.8E-18 6.1E-23 129.2 12.4 85 107-192 12-96 (116)
80 2khc_A Testis-specific RNP-typ 99.8 2.9E-19 9.9E-24 133.9 8.0 81 110-190 38-118 (118)
81 3ulh_A THO complex subunit 4; 99.8 1.2E-18 4.1E-23 128.2 11.1 83 107-190 24-106 (107)
82 2cqp_A RNA-binding protein 12; 99.8 5.3E-19 1.8E-23 128.0 8.9 84 109-192 12-95 (98)
83 2m2b_A RNA-binding protein 10; 99.8 3.1E-19 1.1E-23 136.3 8.1 84 109-193 20-109 (131)
84 2dgv_A HnRNP M, heterogeneous 99.8 2.2E-18 7.4E-23 123.2 11.8 84 108-193 4-87 (92)
85 3ex7_B RNA-binding protein 8A; 99.8 9.8E-19 3.4E-23 132.5 10.4 87 107-193 17-103 (126)
86 2cqi_A Nucleolysin TIAR; RNA r 99.8 2.9E-18 9.9E-23 125.3 12.5 86 107-194 10-95 (103)
87 2dh8_A DAZ-associated protein 99.8 9E-19 3.1E-23 128.4 9.7 87 107-194 11-97 (105)
88 2dis_A Unnamed protein product 99.8 1.9E-18 6.6E-23 127.5 11.5 86 109-194 5-94 (109)
89 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.2E-18 7.5E-23 135.5 12.5 87 108-194 35-121 (156)
90 2ek1_A RNA-binding protein 12; 99.8 4.8E-19 1.6E-23 127.4 7.7 80 111-190 14-93 (95)
91 2cq3_A RNA-binding protein 9; 99.8 4.6E-18 1.6E-22 124.2 13.0 86 107-194 10-95 (103)
92 2cqg_A TDP-43, TAR DNA-binding 99.8 5E-18 1.7E-22 124.0 13.0 86 107-194 10-95 (103)
93 3r27_A HnRNP L, heterogeneous 99.8 2.5E-18 8.5E-23 123.9 11.1 80 107-192 16-97 (100)
94 1sjq_A Polypyrimidine tract-bi 99.8 1.3E-18 4.6E-23 126.6 9.7 80 109-194 13-94 (105)
95 2rs2_A Musashi-1, RNA-binding 99.8 1.1E-18 3.9E-23 128.9 9.1 85 108-193 21-105 (109)
96 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.5E-19 1.9E-23 122.0 6.5 76 113-189 1-76 (77)
97 2dgw_A Probable RNA-binding pr 99.8 3.4E-18 1.2E-22 122.0 10.6 82 108-192 6-87 (91)
98 1x4b_A Heterogeneous nuclear r 99.8 9.3E-19 3.2E-23 130.7 8.0 83 111-194 26-108 (116)
99 2jwn_A Embryonic polyadenylate 99.8 3.5E-18 1.2E-22 129.1 11.1 81 112-193 36-116 (124)
100 1x4d_A Matrin 3; structural ge 99.8 1.5E-18 5.1E-23 126.2 8.5 80 107-192 10-92 (102)
101 2dgx_A KIAA0430 protein; RRM d 99.8 3.1E-18 1E-22 123.6 10.0 81 109-192 6-90 (96)
102 1x4a_A Splicing factor, argini 99.8 8.7E-18 3E-22 124.0 12.6 84 108-194 18-101 (109)
103 1wg5_A Heterogeneous nuclear r 99.8 3.2E-18 1.1E-22 125.3 10.2 82 109-192 12-94 (104)
104 2kn4_A Immunoglobulin G-bindin 99.8 3.7E-18 1.3E-22 134.4 11.2 85 109-193 67-151 (158)
105 2ki2_A SS-DNA binding protein 99.8 4.1E-19 1.4E-23 126.5 5.1 79 113-192 2-80 (90)
106 2wbr_A GW182, gawky, LD47780P; 99.8 1.9E-18 6.5E-23 120.4 8.3 73 111-189 6-78 (89)
107 2kt5_A RNA and export factor-b 99.8 6E-18 2E-22 127.9 11.8 84 108-192 31-114 (124)
108 1wez_A HnRNP H', FTP-3, hetero 99.8 3.1E-18 1.1E-22 124.9 9.8 83 108-193 11-93 (102)
109 2nlw_A Eukaryotic translation 99.8 1.8E-18 6.3E-23 126.8 8.5 82 107-190 10-98 (105)
110 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.9E-19 2.7E-23 127.7 6.4 83 107-191 14-97 (100)
111 1x5o_A RNA binding motif, sing 99.8 8.4E-18 2.9E-22 125.1 12.1 81 110-191 23-111 (114)
112 2ad9_A Polypyrimidine tract-bi 99.8 7.4E-18 2.5E-22 125.6 11.7 82 108-195 27-110 (119)
113 2a3j_A U1 small nuclear ribonu 99.8 5.1E-18 1.8E-22 128.5 10.8 82 108-192 25-110 (127)
114 2cq4_A RNA binding motif prote 99.8 7.5E-19 2.6E-23 130.8 6.0 80 111-191 24-103 (114)
115 2lea_A Serine/arginine-rich sp 99.8 1.5E-18 5.2E-23 133.1 7.8 87 108-194 43-129 (135)
116 4fxv_A ELAV-like protein 1; RN 99.8 3.8E-18 1.3E-22 123.7 9.4 68 213-280 17-84 (99)
117 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.5E-18 1.2E-22 131.7 9.8 80 110-189 61-140 (140)
118 2hgl_A HNRPF protein, heteroge 99.8 2.2E-18 7.6E-23 132.0 8.5 80 109-190 41-123 (136)
119 1wex_A Hypothetical protein (r 99.8 1.4E-17 4.6E-22 121.8 12.3 81 108-194 11-93 (104)
120 2krb_A Eukaryotic translation 99.7 1.7E-18 5.8E-23 120.9 7.0 73 112-186 1-80 (81)
121 2err_A Ataxin-2-binding protei 99.7 3.4E-18 1.1E-22 126.3 9.0 84 107-192 24-107 (109)
122 2cpi_A CCR4-NOT transcription 99.7 4.8E-18 1.6E-22 125.9 9.6 86 108-193 11-102 (111)
123 2db1_A Heterogeneous nuclear r 99.7 2.6E-18 8.8E-23 128.8 7.9 80 109-190 14-96 (118)
124 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.6E-18 2.6E-22 133.7 11.0 85 109-193 69-153 (165)
125 1iqt_A AUF1, heterogeneous nuc 99.7 1.1E-18 3.9E-23 119.8 5.2 75 114-189 1-75 (75)
126 2dnq_A RNA-binding protein 4B; 99.7 2.2E-17 7.7E-22 117.5 12.1 79 108-194 4-82 (90)
127 2cq1_A PTB-like protein L; RRM 99.7 1.3E-17 4.5E-22 121.1 11.0 82 107-194 10-93 (101)
128 2cpy_A RNA-binding protein 12; 99.7 1.9E-18 6.6E-23 128.7 6.7 82 108-191 11-93 (114)
129 1fj7_A Nucleolin RBD1, protein 99.7 1E-18 3.5E-23 127.2 4.8 83 109-193 14-96 (101)
130 1wel_A RNA-binding protein 12; 99.7 2E-18 6.8E-23 130.5 6.4 81 109-190 22-102 (124)
131 2cpx_A Hypothetical protein FL 99.7 2.1E-18 7.3E-23 128.5 6.5 86 109-194 22-107 (115)
132 2fc9_A NCL protein; structure 99.7 9E-18 3.1E-22 122.1 9.5 82 108-193 11-92 (101)
133 2jvr_A Nucleolar protein 3; RN 99.7 5.5E-18 1.9E-22 125.2 8.2 79 110-192 26-105 (111)
134 2fc8_A NCL protein; structure 99.7 2.1E-17 7.2E-22 120.4 11.1 85 107-194 10-94 (102)
135 3q2s_C Cleavage and polyadenyl 99.7 7.2E-18 2.5E-22 140.7 9.7 80 111-190 67-148 (229)
136 3s8s_A Histone-lysine N-methyl 99.7 1.3E-17 4.5E-22 123.2 9.9 68 213-280 4-71 (110)
137 1rk8_A CG8781-PA, CG8781-PA pr 99.7 9.5E-18 3.3E-22 133.1 9.4 122 159-280 11-137 (165)
138 2lmi_A GRSF-1, G-rich sequence 99.7 3E-18 1E-22 126.1 6.0 81 108-190 7-90 (107)
139 2e5j_A Methenyltetrahydrofolat 99.7 2.4E-17 8.3E-22 119.0 10.7 80 108-192 15-94 (97)
140 1why_A Hypothetical protein ri 99.7 2.9E-17 9.9E-22 118.6 10.9 80 108-193 13-94 (97)
141 2dnp_A RNA-binding protein 14; 99.7 3.7E-17 1.2E-21 116.4 10.8 78 108-193 5-82 (90)
142 2lkz_A RNA-binding protein 5; 99.7 9.2E-18 3.1E-22 120.6 7.2 67 214-280 8-76 (95)
143 1x4g_A Nucleolysin TIAR; struc 99.7 4.5E-17 1.5E-21 120.2 11.1 79 109-193 22-100 (109)
144 1x4c_A Splicing factor, argini 99.7 5.7E-17 1.9E-21 119.4 11.6 79 109-194 12-95 (108)
145 2j8a_A Histone-lysine N-methyl 99.7 1.1E-17 3.8E-22 124.3 7.7 78 113-190 3-94 (136)
146 1x4f_A Matrin 3; structural ge 99.7 1.3E-17 4.3E-22 123.0 7.8 78 109-192 22-102 (112)
147 2dnn_A RNA-binding protein 12; 99.7 1.7E-17 5.9E-22 122.2 8.5 76 112-190 16-91 (109)
148 2cpj_A Non-POU domain-containi 99.7 3E-17 1E-21 118.9 9.7 80 107-192 10-89 (99)
149 2dgt_A RNA-binding protein 30; 99.7 5.9E-17 2E-21 115.7 11.0 79 108-194 6-84 (92)
150 2dha_A FLJ20171 protein; RRM d 99.7 1E-17 3.5E-22 126.1 7.2 79 110-190 21-103 (123)
151 2jvo_A Nucleolar protein 3; nu 99.7 3.4E-17 1.2E-21 120.7 9.8 78 108-193 27-104 (108)
152 2lcw_A RNA-binding protein FUS 99.6 5.2E-19 1.8E-23 132.1 0.0 86 109-194 4-97 (116)
153 2xnq_A Nuclear polyadenylated 99.7 5.7E-17 1.9E-21 117.1 10.7 78 106-191 16-94 (97)
154 2ytc_A PRE-mRNA-splicing facto 99.7 3.7E-17 1.3E-21 115.0 9.5 77 108-190 8-85 (85)
155 3egn_A RNA-binding protein 40; 99.7 4.1E-18 1.4E-22 132.0 4.9 88 107-194 40-132 (143)
156 1nu4_A U1A RNA binding domain; 99.7 1.2E-17 4.2E-22 120.4 7.1 82 108-192 4-89 (97)
157 2la4_A Nuclear and cytoplasmic 99.7 2.9E-17 1E-21 119.4 9.1 75 111-191 26-100 (101)
158 2cpd_A Apobec-1 stimulating pr 99.7 1.2E-16 4E-21 115.8 12.1 79 107-193 10-90 (99)
159 2dgu_A Heterogeneous nuclear r 99.7 1.1E-16 3.6E-21 116.9 11.6 79 109-195 8-86 (103)
160 2lea_A Serine/arginine-rich sp 99.7 9.8E-18 3.4E-22 128.6 5.9 108 155-280 5-112 (135)
161 1fjc_A Nucleolin RBD2, protein 99.7 1.9E-17 6.4E-22 119.3 7.0 78 110-192 14-91 (96)
162 2xs2_A Deleted in azoospermia- 99.7 1.3E-17 4.6E-22 121.5 5.6 78 111-191 8-85 (102)
163 3md3_A Nuclear and cytoplasmic 99.7 1.4E-16 4.9E-21 125.5 11.8 83 108-190 83-165 (166)
164 2kvi_A Nuclear polyadenylated 99.7 5.8E-17 2E-21 116.8 8.7 78 108-193 6-84 (96)
165 2lxi_A RNA-binding protein 10; 99.7 1.1E-17 3.6E-22 119.5 4.7 65 215-279 1-66 (91)
166 2i2y_A Fusion protein consists 99.7 9.7E-17 3.3E-21 125.2 10.6 81 107-192 68-148 (150)
167 2e5g_A U6 snRNA-specific termi 99.7 1.6E-16 5.4E-21 114.0 10.8 79 109-193 5-83 (94)
168 2f3j_A RNA and export factor b 99.7 7E-17 2.4E-21 129.4 9.7 83 108-191 84-166 (177)
169 1whx_A Hypothetical protein ri 99.7 3.9E-17 1.3E-21 121.0 7.6 75 111-191 9-83 (111)
170 2hgm_A HNRPF protein, heteroge 99.7 2.9E-17 1E-21 123.9 6.8 79 109-190 39-119 (126)
171 2cqh_A IGF-II mRNA-binding pro 99.7 6.6E-17 2.3E-21 115.7 8.4 79 109-194 5-85 (93)
172 2hgn_A Heterogeneous nuclear r 99.7 1.3E-17 4.3E-22 128.2 4.8 82 109-193 43-124 (139)
173 1wf1_A RNA-binding protein RAL 99.7 1.3E-16 4.5E-21 117.8 10.0 75 111-193 26-101 (110)
174 2qfj_A FBP-interacting repress 99.7 2.7E-16 9.2E-21 129.5 12.9 84 110-193 123-206 (216)
175 1x4e_A RNA binding motif, sing 99.7 1.1E-16 3.6E-21 112.6 8.2 66 214-279 4-69 (85)
176 3p5t_L Cleavage and polyadenyl 99.7 5.2E-17 1.8E-21 115.6 6.6 65 216-280 2-68 (90)
177 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.6E-16 5.6E-21 112.1 8.9 67 214-280 5-71 (87)
178 2la6_A RNA-binding protein FUS 99.7 3.2E-16 1.1E-20 113.5 10.6 69 212-280 10-86 (99)
179 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.5E-16 5.1E-21 111.8 8.6 68 213-280 5-72 (85)
180 2dnh_A Bruno-like 5, RNA bindi 99.7 4E-16 1.4E-20 114.1 11.1 67 213-280 13-79 (105)
181 2cqc_A Arginine/serine-rich sp 99.7 2.6E-16 8.7E-21 113.0 9.8 69 212-280 12-80 (95)
182 2x1f_A MRNA 3'-END-processing 99.7 1.8E-16 6.2E-21 114.1 9.0 67 214-280 1-67 (96)
183 2g4b_A Splicing factor U2AF 65 99.7 2.5E-16 8.7E-21 125.1 10.7 80 110-189 92-171 (172)
184 2div_A TRNA selenocysteine ass 99.7 2.2E-16 7.5E-21 114.3 9.4 68 213-280 7-75 (99)
185 3ns6_A Eukaryotic translation 99.7 5.5E-17 1.9E-21 117.8 6.0 66 215-280 6-77 (100)
186 1x5u_A Splicing factor 3B subu 99.7 2.9E-16 1E-20 114.9 9.9 69 212-280 12-80 (105)
187 1x5p_A Negative elongation fac 99.7 5.5E-16 1.9E-20 111.8 11.2 80 107-194 10-89 (97)
188 2cq0_A Eukaryotic translation 99.7 2.9E-16 1E-20 114.5 9.9 69 212-280 12-80 (103)
189 1wg1_A KIAA1579 protein, homol 99.7 1.2E-16 4E-21 113.3 7.5 75 110-191 3-77 (88)
190 3md1_A Nuclear and cytoplasmic 99.7 2.6E-16 8.9E-21 110.0 9.2 65 216-280 2-66 (83)
191 2dnz_A Probable RNA-binding pr 99.7 3.6E-16 1.2E-20 112.2 10.1 67 214-280 4-70 (95)
192 1sjr_A Polypyrimidine tract-bi 99.7 8.2E-16 2.8E-20 120.4 12.8 79 111-193 45-125 (164)
193 2e5h_A Zinc finger CCHC-type a 99.7 4.4E-16 1.5E-20 111.6 10.3 69 212-280 13-81 (94)
194 2e44_A Insulin-like growth fac 99.7 3.6E-16 1.2E-20 112.5 9.8 79 110-192 13-92 (96)
195 2cq2_A Hypothetical protein LO 99.7 1.2E-16 4.3E-21 117.8 7.4 78 107-190 20-104 (114)
196 2dgo_A Cytotoxic granule-assoc 99.7 4.8E-16 1.6E-20 115.7 10.6 69 212-280 12-80 (115)
197 2dgs_A DAZ-associated protein 99.7 5.2E-16 1.8E-20 112.3 10.3 67 213-280 8-74 (99)
198 2dnl_A Cytoplasmic polyadenyla 99.7 3.7E-16 1.3E-20 116.2 9.7 78 109-189 5-85 (114)
199 3zzy_A Polypyrimidine tract-bi 99.7 1.1E-15 3.7E-20 115.3 12.3 78 111-193 27-107 (130)
200 2dgp_A Bruno-like 4, RNA bindi 99.7 2.4E-16 8.3E-21 115.5 8.5 69 212-280 10-78 (106)
201 2cpz_A CUG triplet repeat RNA- 99.7 6.7E-16 2.3E-20 114.9 11.0 68 213-280 23-90 (115)
202 1x5s_A Cold-inducible RNA-bind 99.7 3.7E-16 1.3E-20 113.7 9.3 70 211-280 8-77 (102)
203 2jrs_A RNA-binding protein 39; 99.7 6.5E-16 2.2E-20 113.7 10.6 69 212-280 23-91 (108)
204 1whw_A Hypothetical protein ri 99.7 3.8E-16 1.3E-20 113.0 9.0 68 213-280 6-73 (99)
205 1b7f_A Protein (SXL-lethal pro 99.7 9.9E-16 3.4E-20 121.1 12.2 81 109-189 86-168 (168)
206 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.9E-16 9.9E-21 114.3 8.4 69 212-280 9-77 (102)
207 2yh0_A Splicing factor U2AF 65 99.7 6.8E-16 2.3E-20 125.4 11.5 84 109-192 111-194 (198)
208 2dnm_A SRP46 splicing factor; 99.7 3E-16 1E-20 114.5 8.3 69 212-280 10-78 (103)
209 4f25_A Polyadenylate-binding p 99.7 3.3E-16 1.1E-20 116.7 8.5 64 215-280 5-68 (115)
210 2khc_A Testis-specific RNP-typ 99.7 6.9E-16 2.4E-20 115.3 10.3 69 212-280 37-105 (118)
211 2hzc_A Splicing factor U2AF 65 99.7 3.2E-16 1.1E-20 110.6 8.0 72 110-188 4-86 (87)
212 1x4h_A RNA-binding protein 28; 99.7 7.2E-16 2.5E-20 113.9 10.3 67 212-278 12-78 (111)
213 2cph_A RNA binding motif prote 99.6 7.2E-16 2.5E-20 113.1 10.2 69 212-280 12-82 (107)
214 3beg_B Splicing factor, argini 99.6 4.6E-16 1.6E-20 115.9 9.2 75 110-191 14-93 (115)
215 3pgw_S U1-70K; protein-RNA com 99.6 8.1E-18 2.8E-22 153.0 -0.5 68 213-280 100-167 (437)
216 1p27_B RNA-binding protein 8A; 99.6 5E-16 1.7E-20 113.8 9.2 68 213-280 21-88 (106)
217 2diu_A KIAA0430 protein; struc 99.6 9.6E-16 3.3E-20 107.8 10.2 75 110-194 6-86 (96)
218 2kxn_B Transformer-2 protein h 99.6 6E-16 2.1E-20 117.6 9.7 69 212-280 43-111 (129)
219 2cjk_A Nuclear polyadenylated 99.6 3.1E-16 1.1E-20 123.9 8.4 80 111-191 86-165 (167)
220 1s79_A Lupus LA protein; RRM, 99.6 4.1E-16 1.4E-20 113.7 8.2 65 214-280 10-74 (103)
221 2do4_A Squamous cell carcinoma 99.6 1.1E-15 3.9E-20 110.7 10.5 67 213-280 15-81 (100)
222 1x5t_A Splicing factor 3B subu 99.6 3.6E-16 1.2E-20 112.5 7.7 67 214-280 4-71 (96)
223 2dhg_A TRNA selenocysteine ass 99.6 8.5E-16 2.9E-20 112.2 9.8 67 213-280 7-74 (104)
224 3d2w_A TAR DNA-binding protein 99.6 5E-16 1.7E-20 110.3 8.2 77 107-192 6-84 (89)
225 2pe8_A Splicing factor 45; RRM 99.6 1.5E-15 5.1E-20 111.0 11.0 83 108-190 4-92 (105)
226 2cqp_A RNA-binding protein 12; 99.6 4.4E-16 1.5E-20 112.4 8.1 68 213-280 13-80 (98)
227 1l3k_A Heterogeneous nuclear r 99.6 8.4E-16 2.9E-20 124.7 10.7 84 110-194 102-185 (196)
228 2d9p_A Polyadenylate-binding p 99.6 1.2E-15 3.9E-20 111.3 10.2 66 213-280 13-78 (103)
229 1fxl_A Paraneoplastic encephal 99.6 1.6E-15 5.6E-20 119.5 11.9 80 110-189 86-167 (167)
230 4f02_A Polyadenylate-binding p 99.6 8.8E-16 3E-20 126.7 10.7 79 111-191 102-180 (213)
231 2cpf_A RNA binding motif prote 99.6 5E-16 1.7E-20 112.2 8.1 67 214-280 4-73 (98)
232 3n9u_C Cleavage and polyadenyl 99.6 5E-16 1.7E-20 121.9 8.7 67 214-280 54-122 (156)
233 2cpe_A RNA-binding protein EWS 99.6 9.3E-16 3.2E-20 113.7 9.7 69 212-280 12-88 (113)
234 2m2b_A RNA-binding protein 10; 99.6 4.8E-16 1.6E-20 118.5 8.3 68 212-280 20-89 (131)
235 2dng_A Eukaryotic translation 99.6 1.2E-15 3.9E-20 111.3 10.0 67 212-280 12-78 (103)
236 3nmr_A Cugbp ELAV-like family 99.6 1.6E-15 5.5E-20 120.6 11.6 79 111-190 94-175 (175)
237 2ek1_A RNA-binding protein 12; 99.6 3.2E-16 1.1E-20 112.5 6.5 67 214-280 14-80 (95)
238 1oo0_B CG8781-PA, drosophila Y 99.6 7.9E-16 2.7E-20 113.6 8.7 68 213-280 24-91 (110)
239 3s7r_A Heterogeneous nuclear r 99.6 8.7E-16 3E-20 108.4 8.5 64 213-276 9-72 (87)
240 2fy1_A RNA-binding motif prote 99.6 9.1E-16 3.1E-20 114.4 9.0 67 213-280 5-71 (116)
241 3ulh_A THO complex subunit 4; 99.6 1.2E-15 4.1E-20 112.0 9.5 68 212-280 26-93 (107)
242 2krb_A Eukaryotic translation 99.6 4.2E-16 1.4E-20 108.6 6.6 63 216-280 2-70 (81)
243 1x5o_A RNA binding motif, sing 99.6 3.1E-15 1.1E-19 111.1 11.7 67 213-280 23-89 (114)
244 1wi8_A EIF-4B, eukaryotic tran 99.6 1.4E-15 4.7E-20 111.1 9.5 66 213-280 13-79 (104)
245 2mss_A Protein (musashi1); RNA 99.6 4.7E-16 1.6E-20 106.6 6.6 63 217-280 1-63 (75)
246 1sjq_A Polypyrimidine tract-bi 99.6 8.1E-16 2.8E-20 111.8 7.8 62 212-279 13-74 (105)
247 2ywk_A Putative RNA-binding pr 99.6 9.8E-16 3.3E-20 109.9 8.1 67 213-280 14-80 (95)
248 4a8x_A RNA-binding protein wit 99.6 7.6E-16 2.6E-20 108.8 7.4 67 214-280 3-70 (88)
249 1p1t_A Cleavage stimulation fa 99.6 8.8E-16 3E-20 112.1 7.9 67 214-280 7-73 (104)
250 2cqd_A RNA-binding region cont 99.6 1.7E-15 5.9E-20 112.8 9.6 68 212-279 14-81 (116)
251 3ucg_A Polyadenylate-binding p 99.6 1.1E-15 3.8E-20 108.3 8.1 65 215-280 6-70 (89)
252 2e5i_A Heterogeneous nuclear r 99.6 3.8E-15 1.3E-19 111.8 11.3 74 114-193 27-103 (124)
253 2do0_A HnRNP M, heterogeneous 99.6 3.3E-15 1.1E-19 110.8 10.9 67 213-280 13-79 (114)
254 2voo_A Lupus LA protein; RNA-b 99.6 2.2E-15 7.6E-20 122.4 10.2 79 111-191 108-186 (193)
255 2dgv_A HnRNP M, heterogeneous 99.6 3.4E-15 1.1E-19 106.4 9.9 66 213-280 6-71 (92)
256 2cq3_A RNA-binding protein 9; 99.6 5.5E-15 1.9E-19 107.6 11.3 67 212-280 12-78 (103)
257 2cqg_A TDP-43, TAR DNA-binding 99.6 3E-15 1E-19 109.0 9.8 65 212-276 12-76 (103)
258 1wf0_A TDP-43, TAR DNA-binding 99.6 6.3E-16 2.2E-20 109.4 6.0 78 110-194 3-80 (88)
259 3ex7_B RNA-binding protein 8A; 99.6 1.9E-15 6.4E-20 114.3 8.7 68 213-280 20-87 (126)
260 1x4d_A Matrin 3; structural ge 99.6 1.1E-15 3.9E-20 110.8 7.1 62 212-279 12-74 (102)
261 2bz2_A Negative elongation fac 99.6 3.1E-15 1.1E-19 112.3 9.7 77 109-193 36-112 (121)
262 1wg5_A Heterogeneous nuclear r 99.6 2.8E-15 9.5E-20 109.6 9.1 65 213-279 13-78 (104)
263 1uaw_A Mouse-musashi-1; RNP-ty 99.6 7.1E-16 2.4E-20 106.2 5.5 63 216-278 1-63 (77)
264 2dh8_A DAZ-associated protein 99.6 2.7E-15 9.1E-20 109.7 8.9 67 212-279 13-79 (105)
265 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.1E-15 3.7E-20 110.9 6.7 67 212-280 16-83 (100)
266 2cq4_A RNA binding motif prote 99.6 1.5E-15 5E-20 112.9 7.5 66 214-280 24-89 (114)
267 1wez_A HnRNP H', FTP-3, hetero 99.6 2.5E-15 8.7E-20 109.4 8.5 65 213-280 13-77 (102)
268 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.2E-15 1.4E-19 114.3 10.2 69 211-279 59-127 (140)
269 2rs2_A Musashi-1, RNA-binding 99.6 1.9E-15 6.4E-20 111.4 7.9 65 213-277 23-87 (109)
270 1u6f_A Tcubp1, RNA-binding pro 99.6 2.4E-15 8.3E-20 115.7 8.8 69 212-280 39-107 (139)
271 2cq1_A PTB-like protein L; RRM 99.6 3.5E-15 1.2E-19 108.3 8.9 61 212-278 12-72 (101)
272 2kt5_A RNA and export factor-b 99.6 9.4E-15 3.2E-19 110.1 11.6 68 212-280 32-99 (124)
273 2cqi_A Nucleolysin TIAR; RNA r 99.6 5.5E-15 1.9E-19 107.7 9.9 67 212-280 12-78 (103)
274 1wel_A RNA-binding protein 12; 99.6 1.6E-15 5.6E-20 114.4 7.2 68 212-280 22-89 (124)
275 2wbr_A GW182, gawky, LD47780P; 99.6 2.6E-15 9E-20 104.5 7.5 61 214-280 6-66 (89)
276 2cpy_A RNA-binding protein 12; 99.6 2.5E-15 8.7E-20 111.6 7.8 66 212-279 12-78 (114)
277 2ki2_A SS-DNA binding protein 99.6 6.7E-16 2.3E-20 109.7 4.3 64 216-280 2-65 (90)
278 1wex_A Hypothetical protein (r 99.6 5.5E-15 1.9E-19 107.8 9.3 62 212-279 12-73 (104)
279 2dgw_A Probable RNA-binding pr 99.6 6.7E-15 2.3E-19 104.7 9.5 65 213-280 8-72 (91)
280 2ad9_A Polypyrimidine tract-bi 99.6 4.3E-15 1.5E-19 110.7 8.6 62 212-279 28-89 (119)
281 1h2v_Z 20 kDa nuclear CAP bind 99.6 5.9E-15 2E-19 115.8 9.8 68 213-280 37-104 (156)
282 2dnl_A Cytoplasmic polyadenyla 99.6 2.8E-15 9.5E-20 111.4 7.6 63 214-277 7-72 (114)
283 2hgl_A HNRPF protein, heteroge 99.6 2.3E-15 8E-20 115.1 7.3 65 213-279 42-109 (136)
284 3r27_A HnRNP L, heterogeneous 99.6 3.7E-15 1.3E-19 107.3 7.8 62 212-279 18-79 (100)
285 2cpi_A CCR4-NOT transcription 99.6 5.2E-15 1.8E-19 109.4 8.7 68 213-280 13-86 (111)
286 2dnn_A RNA-binding protein 12; 99.6 3.5E-15 1.2E-19 109.8 7.6 62 215-279 16-77 (109)
287 2dgx_A KIAA0430 protein; RRM d 99.6 4.1E-15 1.4E-19 107.0 7.8 65 213-280 7-75 (96)
288 2jwn_A Embryonic polyadenylate 99.6 4E-15 1.4E-19 112.1 8.0 65 215-280 36-100 (124)
289 2db1_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 111.5 7.6 65 213-279 15-82 (118)
290 2nlw_A Eukaryotic translation 99.6 3.2E-15 1.1E-19 109.4 7.0 65 214-280 14-84 (105)
291 2lmi_A GRSF-1, G-rich sequence 99.6 2.8E-15 9.5E-20 110.1 6.6 66 213-280 9-77 (107)
292 2err_A Ataxin-2-binding protei 99.6 6.9E-15 2.3E-19 108.4 8.5 67 212-280 26-92 (109)
293 1x4a_A Splicing factor, argini 99.6 2.6E-14 8.9E-19 105.2 11.4 66 212-280 19-84 (109)
294 2dis_A Unnamed protein product 99.6 4.1E-15 1.4E-19 109.5 6.8 65 214-278 7-73 (109)
295 1x4b_A Heterogeneous nuclear r 99.6 7.2E-15 2.4E-19 109.5 7.9 65 214-279 26-90 (116)
296 3q2s_C Cleavage and polyadenyl 99.6 4.5E-15 1.5E-19 123.8 7.2 67 214-280 67-135 (229)
297 1fje_B Nucleolin RBD12, protei 99.6 7.4E-15 2.5E-19 117.0 8.1 77 110-191 97-173 (175)
298 1iqt_A AUF1, heterogeneous nuc 99.6 2.1E-15 7.3E-20 103.2 4.2 62 217-279 1-62 (75)
299 2a3j_A U1 small nuclear ribonu 99.6 1E-14 3.6E-19 110.2 8.4 65 213-280 27-95 (127)
300 1x4f_A Matrin 3; structural ge 99.5 1.9E-14 6.5E-19 106.0 9.3 62 212-279 22-84 (112)
301 2fc9_A NCL protein; structure 99.5 1.7E-14 5.9E-19 104.6 8.9 65 212-280 12-76 (101)
302 2dha_A FLJ20171 protein; RRM d 99.5 6.4E-15 2.2E-19 110.7 6.5 64 214-279 22-89 (123)
303 3u1l_A PRE-mRNA-splicing facto 99.5 1.1E-14 3.9E-19 121.2 8.6 78 109-192 131-229 (240)
304 2j8a_A Histone-lysine N-methyl 99.5 5.8E-15 2E-19 109.7 6.0 64 216-279 3-80 (136)
305 2jvr_A Nucleolar protein 3; RN 99.5 8.4E-15 2.9E-19 108.0 6.6 63 214-280 27-90 (111)
306 2fc8_A NCL protein; structure 99.5 3.4E-14 1.2E-18 103.2 9.7 66 212-280 12-77 (102)
307 1x4c_A Splicing factor, argini 99.5 3.1E-14 1.1E-18 104.6 9.6 61 213-280 13-73 (108)
308 2cpj_A Non-POU domain-containi 99.5 3.4E-14 1.2E-18 102.7 9.3 63 212-280 12-74 (99)
309 2xs2_A Deleted in azoospermia- 99.5 4.6E-15 1.6E-19 107.9 4.2 65 214-279 8-75 (102)
310 2hgn_A Heterogeneous nuclear r 99.5 6.1E-15 2.1E-19 113.2 5.1 65 213-280 44-108 (139)
311 3lqv_A PRE-mRNA branch site pr 99.5 4.3E-14 1.5E-18 105.0 9.3 65 213-280 6-70 (115)
312 1fj7_A Nucleolin RBD1, protein 99.5 3.3E-15 1.1E-19 108.5 3.1 65 214-280 16-80 (101)
313 2cpx_A Hypothetical protein FL 99.5 9.3E-15 3.2E-19 108.6 5.6 68 213-280 23-90 (115)
314 2dnq_A RNA-binding protein 4B; 99.5 5.3E-14 1.8E-18 99.8 9.2 60 213-280 6-65 (90)
315 1why_A Hypothetical protein ri 99.5 5.9E-14 2E-18 101.0 9.6 62 213-280 15-76 (97)
316 2hgm_A HNRPF protein, heteroge 99.5 2E-14 6.8E-19 108.3 7.2 64 213-279 40-105 (126)
317 1jmt_A Splicing factor U2AF 35 99.5 5.2E-15 1.8E-19 108.0 3.7 72 117-189 20-103 (104)
318 2f3j_A RNA and export factor b 99.5 3.3E-14 1.1E-18 113.8 8.8 68 212-280 85-152 (177)
319 2e5j_A Methenyltetrahydrofolat 99.5 4.6E-14 1.6E-18 101.6 8.7 63 213-280 17-79 (97)
320 3pgw_A U1-A; protein-RNA compl 99.5 5.2E-14 1.8E-18 120.8 10.6 77 109-190 204-281 (282)
321 2la4_A Nuclear and cytoplasmic 99.5 6.4E-14 2.2E-18 101.6 9.4 61 214-280 26-86 (101)
322 2ytc_A PRE-mRNA-splicing facto 99.5 7.7E-14 2.6E-18 97.8 9.3 62 213-280 10-72 (85)
323 2dit_A HIV TAT specific factor 99.5 1.3E-13 4.5E-18 102.0 11.0 82 107-192 10-102 (112)
324 3v4m_A Splicing factor U2AF 65 99.5 4.1E-14 1.4E-18 103.4 7.8 81 110-190 3-95 (105)
325 2cq2_A Hypothetical protein LO 99.5 2E-14 6.9E-19 106.0 6.0 62 213-280 23-86 (114)
326 2lcw_A RNA-binding protein FUS 99.2 1.6E-15 5.5E-20 113.0 0.0 67 214-280 6-80 (116)
327 2jvo_A Nucleolar protein 3; nu 99.5 8E-14 2.7E-18 102.5 9.1 60 213-280 29-88 (108)
328 1nu4_A U1A RNA binding domain; 99.5 1.8E-14 6E-19 103.7 5.2 65 213-280 6-74 (97)
329 2xnq_A Nuclear polyadenylated 99.5 9.6E-14 3.3E-18 100.0 8.9 61 212-280 19-80 (97)
330 3tyt_A Heterogeneous nuclear r 99.5 5.1E-14 1.7E-18 115.5 8.2 78 109-188 120-203 (205)
331 3sde_A Paraspeckle component 1 99.5 1.7E-13 5.7E-18 116.5 11.7 84 108-192 92-179 (261)
332 2hvz_A Splicing factor, argini 99.5 3.2E-14 1.1E-18 103.1 6.2 60 216-280 1-60 (101)
333 1wf1_A RNA-binding protein RAL 99.5 8.3E-14 2.8E-18 102.6 8.4 59 214-280 26-85 (110)
334 2kvi_A Nuclear polyadenylated 99.5 1E-13 3.5E-18 99.6 8.7 60 213-280 8-68 (96)
335 3beg_B Splicing factor, argini 99.5 3.4E-14 1.2E-18 105.7 6.3 60 214-280 15-74 (115)
336 3ue2_A Poly(U)-binding-splicin 99.5 1E-13 3.5E-18 103.3 8.7 80 111-190 19-107 (118)
337 2dgt_A RNA-binding protein 30; 99.5 1.4E-13 4.7E-18 98.0 9.0 60 213-280 8-67 (92)
338 1qm9_A Polypyrimidine tract-bi 99.5 7.2E-14 2.5E-18 113.6 8.5 77 110-191 118-196 (198)
339 1whx_A Hypothetical protein ri 99.5 5.9E-14 2E-18 103.7 7.2 61 214-280 9-69 (111)
340 1x4g_A Nucleolysin TIAR; struc 99.5 7.6E-14 2.6E-18 102.7 7.6 61 214-280 24-84 (109)
341 2cpd_A Apobec-1 stimulating pr 99.5 2.5E-13 8.5E-18 98.1 10.1 61 212-280 12-74 (99)
342 2adc_A Polypyrimidine tract-bi 99.5 1.4E-13 4.9E-18 114.7 10.1 78 109-191 148-227 (229)
343 2dnp_A RNA-binding protein 14; 99.5 1.1E-13 3.8E-18 98.2 8.0 60 213-280 7-66 (90)
344 3d2w_A TAR DNA-binding protein 99.5 9.4E-14 3.2E-18 98.4 7.4 56 212-272 8-63 (89)
345 3zzy_A Polypyrimidine tract-bi 99.5 2.1E-13 7E-18 102.8 9.1 60 216-280 29-89 (130)
346 2dgu_A Heterogeneous nuclear r 99.5 1.4E-13 4.6E-18 100.2 7.9 61 212-280 8-68 (103)
347 2e5i_A Heterogeneous nuclear r 99.5 5.4E-13 1.9E-17 100.0 11.2 59 216-280 26-85 (124)
348 3egn_A RNA-binding protein 40; 99.5 2.3E-14 7.8E-19 110.7 3.4 68 213-280 43-115 (143)
349 1fjc_A Nucleolin RBD2, protein 99.5 5.2E-14 1.8E-18 101.0 4.8 61 214-279 15-75 (96)
350 2e5g_A U6 snRNA-specific termi 99.4 4.1E-13 1.4E-17 96.0 9.2 61 214-280 7-67 (94)
351 1wg1_A KIAA1579 protein, homol 99.4 2E-13 6.9E-18 96.4 7.1 60 214-280 4-63 (88)
352 1sjr_A Polypyrimidine tract-bi 99.4 1.7E-13 5.8E-18 107.2 7.2 62 215-280 46-107 (164)
353 2cqh_A IGF-II mRNA-binding pro 99.4 1.4E-13 4.6E-18 98.3 6.1 60 213-279 6-66 (93)
354 2e44_A Insulin-like growth fac 99.4 2.5E-13 8.5E-18 97.4 7.2 63 214-280 14-77 (96)
355 1x5p_A Negative elongation fac 99.4 9E-13 3.1E-17 94.8 10.0 61 212-280 12-72 (97)
356 2voo_A Lupus LA protein; RNA-b 99.4 7.9E-13 2.7E-17 107.3 10.6 107 163-278 63-171 (193)
357 2pe8_A Splicing factor 45; RRM 99.4 7.7E-13 2.6E-17 96.6 9.2 67 214-280 7-79 (105)
358 2hzc_A Splicing factor U2AF 65 99.4 2.5E-13 8.7E-18 95.5 6.2 60 214-280 5-75 (87)
359 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.2E-12 1.1E-16 92.2 12.0 75 112-193 10-91 (100)
360 2diu_A KIAA0430 protein; struc 99.4 1E-12 3.6E-17 92.3 8.1 57 214-280 7-69 (96)
361 1wf0_A TDP-43, TAR DNA-binding 99.4 4.7E-13 1.6E-17 94.4 5.0 56 214-274 4-59 (88)
362 3tht_A Alkylated DNA repair pr 99.4 1.6E-12 5.4E-17 113.9 9.3 79 106-190 12-97 (345)
363 2bz2_A Negative elongation fac 99.3 2.6E-12 9E-17 96.2 8.4 60 213-280 37-96 (121)
364 3s6e_A RNA-binding protein 39; 99.3 8.6E-12 2.9E-16 92.2 8.6 77 110-190 5-91 (114)
365 3u1l_A PRE-mRNA-splicing facto 99.3 5.1E-12 1.8E-16 105.2 7.8 62 213-280 132-202 (240)
366 3tht_A Alkylated DNA repair pr 99.3 7.7E-12 2.6E-16 109.5 8.3 63 212-280 15-79 (345)
367 3v4m_A Splicing factor U2AF 65 99.3 8.4E-12 2.9E-16 91.0 6.8 67 214-280 4-82 (105)
368 2dit_A HIV TAT specific factor 99.3 3.6E-11 1.2E-15 88.7 10.1 64 213-280 13-87 (112)
369 3ue2_A Poly(U)-binding-splicin 99.2 2E-11 6.8E-16 90.8 7.4 67 214-280 19-94 (118)
370 1jmt_A Splicing factor U2AF 35 99.2 5.8E-12 2E-16 91.7 2.5 60 220-280 20-91 (104)
371 2d9o_A DNAJ (HSP40) homolog, s 99.2 1.8E-10 6.2E-15 83.0 9.6 50 225-279 27-76 (100)
372 1owx_A Lupus LA protein, SS-B, 99.1 2.8E-10 9.7E-15 84.3 8.3 76 109-190 15-94 (121)
373 2dnr_A Synaptojanin-1; RRM dom 99.0 6.1E-10 2.1E-14 77.5 7.6 73 109-190 4-84 (91)
374 3s6e_A RNA-binding protein 39; 99.0 1.3E-09 4.4E-14 80.4 7.7 63 214-280 6-78 (114)
375 1owx_A Lupus LA protein, SS-B, 99.0 1.1E-09 3.9E-14 81.0 7.0 61 212-278 15-77 (121)
376 3dxb_A Thioredoxin N-terminall 99.0 1.8E-09 6.1E-14 89.2 8.9 67 124-190 141-211 (222)
377 1ufw_A Synaptojanin 2; RNP dom 98.9 2.4E-09 8.3E-14 74.9 5.8 74 108-190 11-93 (95)
378 2l9w_A U4/U6 snRNA-associated- 98.6 1.8E-07 6.3E-12 66.7 8.2 73 109-187 18-95 (117)
379 3dxb_A Thioredoxin N-terminall 98.5 2.6E-07 8.8E-12 76.1 7.0 55 226-280 140-198 (222)
380 2dnr_A Synaptojanin-1; RRM dom 98.5 3E-07 1E-11 63.9 5.9 59 213-280 5-71 (91)
381 1ufw_A Synaptojanin 2; RNP dom 98.3 4.8E-07 1.6E-11 63.2 3.4 61 211-280 11-80 (95)
382 2dhx_A Poly (ADP-ribose) polym 98.2 2.5E-05 8.4E-10 55.3 10.6 90 109-228 5-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 97.9 5.9E-05 2E-09 53.8 7.6 62 213-280 19-85 (117)
384 1uw4_A UPF3X; nonsense mediate 97.6 0.00035 1.2E-08 48.6 7.7 68 113-180 2-71 (91)
385 1uw4_A UPF3X; nonsense mediate 97.3 0.0011 3.7E-08 46.2 7.9 65 216-280 2-68 (91)
386 1wey_A Calcipressin 1; structu 97.3 0.00059 2E-08 48.4 6.2 75 110-190 3-82 (104)
387 1whv_A Poly(A)-specific ribonu 97.2 0.0024 8.2E-08 44.6 8.2 54 215-277 16-69 (100)
388 1whv_A Poly(A)-specific ribonu 97.0 0.0041 1.4E-07 43.4 7.7 58 109-175 13-70 (100)
389 3ctr_A Poly(A)-specific ribonu 96.8 0.0015 5.2E-08 45.7 4.6 53 216-277 7-59 (101)
390 2dhx_A Poly (ADP-ribose) polym 96.8 0.0073 2.5E-07 42.6 7.9 54 215-276 8-66 (104)
391 1wwh_A Nucleoporin 35, nucleop 96.6 0.0076 2.6E-07 43.9 7.0 70 112-189 24-94 (119)
392 2l08_A Regulator of nonsense t 96.3 0.0024 8.1E-08 44.8 3.0 69 112-180 9-79 (97)
393 3ctr_A Poly(A)-specific ribonu 96.2 0.0071 2.4E-07 42.3 4.8 54 113-175 7-60 (101)
394 3pq1_A Poly(A) RNA polymerase; 96.1 0.0037 1.2E-07 56.6 3.8 57 111-173 52-108 (464)
395 2l08_A Regulator of nonsense t 96.0 0.0093 3.2E-07 41.7 4.7 65 215-279 9-75 (97)
396 1wwh_A Nucleoporin 35, nucleop 95.6 0.038 1.3E-06 40.2 6.7 58 215-280 24-81 (119)
397 1wey_A Calcipressin 1; structu 95.3 0.03 1E-06 39.6 5.2 60 215-280 5-69 (104)
398 3pq1_A Poly(A) RNA polymerase; 94.6 0.02 7E-07 51.7 3.4 54 216-275 54-107 (464)
399 3p3d_A Nucleoporin 53; structu 93.7 0.072 2.4E-06 39.3 4.1 76 112-189 7-96 (132)
400 3p3d_A Nucleoporin 53; structu 88.4 0.31 1E-05 35.9 2.9 62 216-279 8-83 (132)
401 3d45_A Poly(A)-specific ribonu 88.3 1.4 4.9E-05 40.3 8.0 55 215-278 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 83.6 3.5 0.00012 37.7 8.0 55 112-175 440-494 (507)
403 4eyt_A Telomerase associated p 75.3 16 0.00056 24.7 8.1 57 213-277 10-66 (129)
404 2g0c_A ATP-dependent RNA helic 54.0 28 0.00094 22.3 5.1 67 114-189 2-74 (76)
405 4e8u_A Putative uncharacterize 52.5 35 0.0012 26.1 6.1 56 114-172 14-81 (172)
406 3bbo_T Ribosomal protein L21; 35.5 9.3 0.00032 31.1 0.4 21 1-21 1-22 (257)
407 3lpe_A Putative transcription 32.9 25 0.00086 23.8 2.3 24 256-279 49-72 (92)
408 4e8u_A Putative uncharacterize 32.6 99 0.0034 23.6 5.7 48 217-267 14-72 (172)
409 2v94_A RPS24, 30S ribosomal pr 28.9 50 0.0017 23.1 3.3 48 122-170 37-89 (107)
410 3h7h_B Transcription elongatio 26.0 1.5E+02 0.005 20.6 5.3 36 138-178 40-75 (106)
411 2i9x_A Putative septation prot 25.7 75 0.0026 21.3 3.6 26 241-266 5-30 (87)
412 2g1d_A 30S ribosomal protein S 24.6 45 0.0015 23.0 2.4 47 122-169 29-80 (98)
413 3ts2_A Protein LIN-28 homolog 24.2 7.6 0.00026 29.1 -1.8 27 128-162 3-29 (148)
414 3fut_A Dimethyladenosine trans 23.3 78 0.0027 26.0 4.1 32 113-145 111-142 (271)
415 3mfb_A Uncharacterized protein 22.8 98 0.0034 23.3 4.1 36 227-262 3-41 (157)
416 3mfb_A Uncharacterized protein 22.6 1.5E+02 0.0051 22.2 5.1 37 124-160 3-42 (157)
417 2ia9_A Putative septation prot 22.4 92 0.0031 21.5 3.6 26 241-266 5-30 (100)
418 2i9z_A Putative septation prot 21.6 98 0.0034 21.5 3.6 26 241-266 5-30 (105)
419 1xn9_A 30S ribosomal protein S 20.4 2.2E+02 0.0074 19.6 6.4 49 122-171 28-81 (101)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.6e-34 Score=239.86 Aligned_cols=156 Identities=31% Similarity=0.500 Sum_probs=138.7
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++|+++|+++|++||+|.+|++++|..+++++|||||+|.+.++|.+|++.+++..+.|+.|++.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~ 90 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIM 90 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
++....... ....++|||+|||+.+++++|+++|+.||.|..|+++++. +.++|||||+|.+.
T Consensus 91 ~~~~~~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 91 WSQRDPSLR---------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQ 153 (213)
T ss_dssp ECCCCTHHH---------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSH
T ss_pred ccccccccc---------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCH
Confidence 875332111 1124689999999999999999999999999999999985 55799999999999
Q ss_pred HHHHHHHHHhcCC
Q 023583 268 EDLQSALDAMNGV 280 (280)
Q Consensus 268 e~A~~Al~~lnG~ 280 (280)
++|.+|++.|||.
T Consensus 154 ~~a~~Ai~~lng~ 166 (213)
T 4f02_A 154 EAAERAIEKMNGM 166 (213)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999984
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.6e-34 Score=225.84 Aligned_cols=152 Identities=26% Similarity=0.520 Sum_probs=142.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 191 (280)
.++|||+|||+++++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999999998999999999999999999999999999999999999998763
Q ss_pred CCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHH
Q 023583 192 PRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQ 271 (280)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~ 271 (280)
... ....++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.
T Consensus 82 ~~~-----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 144 (167)
T 1fxl_A 82 SSA-----------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 144 (167)
T ss_dssp CCG-----------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred Ccc-----------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHH
Confidence 321 123578999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHhcCC
Q 023583 272 SALDAMNGV 280 (280)
Q Consensus 272 ~Al~~lnG~ 280 (280)
+|++.|||.
T Consensus 145 ~A~~~l~g~ 153 (167)
T 1fxl_A 145 EAIKGLNGQ 153 (167)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhcCC
Confidence 999999984
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=7.2e-34 Score=226.46 Aligned_cols=153 Identities=27% Similarity=0.467 Sum_probs=143.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+.++|||+|||+++++++|+++|+.||+|..++++++..+|+++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999986
Q ss_pred CCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHH
Q 023583 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (280)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A 270 (280)
.... ....++|||+|||..+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|
T Consensus 82 ~~~~-----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 82 PGGE-----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 144 (168)
T ss_dssp CCSS-----------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCcc-----------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 4321 12457999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHhcCC
Q 023583 271 QSALDAMNGV 280 (280)
Q Consensus 271 ~~Al~~lnG~ 280 (280)
.+|++.|||.
T Consensus 145 ~~A~~~l~g~ 154 (168)
T 1b7f_A 145 QEAISALNNV 154 (168)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhcCC
Confidence 9999999984
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=224.59 Aligned_cols=152 Identities=32% Similarity=0.603 Sum_probs=139.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 192 (280)
++|||+|||+++|+++|+++|+.||.|..++++++. +++++|||||+|.+.++|.+|++.++|..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999987 5889999999999999999999999999999999999988643
Q ss_pred CCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHH
Q 023583 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (280)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~ 272 (280)
.. ....+.++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+
T Consensus 80 ~~---------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 80 QQ---------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp CC---------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHH
T ss_pred CC---------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 32 122346799999999999999999999999999999999999899999999999999999999
Q ss_pred HHHHhcCC
Q 023583 273 ALDAMNGV 280 (280)
Q Consensus 273 Al~~lnG~ 280 (280)
|+..|||.
T Consensus 145 A~~~l~g~ 152 (166)
T 3md3_A 145 AMDSMQGQ 152 (166)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 99999984
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.4e-33 Score=227.51 Aligned_cols=159 Identities=28% Similarity=0.483 Sum_probs=139.1
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++|+++|+++|+.||.|..|.++++..+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 344678999999999999999999999999999999999998999999999999999999999985 9999999999999
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
++........ .......++|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.
T Consensus 88 ~~~~~~~~~~-----------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~ 156 (196)
T 1l3k_A 88 RAVSREDSQR-----------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH 156 (196)
T ss_dssp ECCC----------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSH
T ss_pred cccCcccccc-----------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCH
Confidence 8764432211 11223458999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHhcC
Q 023583 268 EDLQSALDAMNG 279 (280)
Q Consensus 268 e~A~~Al~~lnG 279 (280)
++|.+|+.. +|
T Consensus 157 ~~A~~A~~~-~~ 167 (196)
T 1l3k_A 157 DSVDKIVIQ-KY 167 (196)
T ss_dssp HHHHHHHHC-SC
T ss_pred HHHHHHHHh-CC
Confidence 999999985 44
No 6
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=6.6e-33 Score=222.20 Aligned_cols=153 Identities=24% Similarity=0.400 Sum_probs=137.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCC--CceeEEEEEECCHHHHHHHHHHhhCCCcC---CceeE
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTD--RSRGFGFVTMGSVEEAKEAIRLFDGSQIG---GRTVK 185 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~--~~~g~afV~f~~~~~a~~a~~~l~g~~i~---g~~l~ 185 (280)
+.++|||+|||+++++++|+++|++||+|..++++++..++ +++|||||+|.+.++|.+|++.++|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999776 89999999999999999999999998876 67788
Q ss_pred EecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeC
Q 023583 186 VNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFE 265 (280)
Q Consensus 186 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~ 265 (280)
+.++...... ....++|||+|||+.+++++|+++|+.||.|..+.+.+++ +|.++|||||+|.
T Consensus 82 ~~~~~~~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~ 144 (175)
T 3nmr_A 82 MKPADSEKNN----------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFT 144 (175)
T ss_dssp EEECGGGCCS----------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEES
T ss_pred Eccccccccc----------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEEC
Confidence 8776533221 1245789999999999999999999999999999999986 6999999999999
Q ss_pred CHHHHHHHHHHhcCC
Q 023583 266 TAEDLQSALDAMNGV 280 (280)
Q Consensus 266 ~~e~A~~Al~~lnG~ 280 (280)
+.++|.+|++.|||.
T Consensus 145 ~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 145 TRAMAQTAIKAMHQA 159 (175)
T ss_dssp SHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHhcCC
Confidence 999999999999983
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.3e-33 Score=232.59 Aligned_cols=164 Identities=26% Similarity=0.476 Sum_probs=140.4
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+.++|||+|||+++|+++|+++|+.||.|..|+++++..+|+++|||||+|.+.++|.+|++.++|..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999998765
Q ss_pred CCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHH
Q 023583 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (280)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A 270 (280)
......... ..........++|||+|||+.+++++|+++|+.||.|..++++.++.+|+++|||||+|.+.++|
T Consensus 107 ~~~~~~~~~------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 107 NIGQAQPII------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSS 180 (216)
T ss_dssp CCGGGHHHH------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred Cccccchhh------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 332110000 00000123457999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC
Q 023583 271 QSALDAMNGV 280 (280)
Q Consensus 271 ~~Al~~lnG~ 280 (280)
.+|++.|||.
T Consensus 181 ~~A~~~l~g~ 190 (216)
T 2qfj_A 181 QDAVSSMNLF 190 (216)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHccCC
Confidence 9999999984
No 8
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=2.9e-32 Score=224.70 Aligned_cols=164 Identities=16% Similarity=0.164 Sum_probs=135.3
Q ss_pred CCCCeEEEeCCC-CCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 110 DEAARLYVGNLP-YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~V~nLp-~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
.+..+|||+||| +.+++++|+++|+.||.|.+|+++++. +|||||+|.+.++|.+|++.|||..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 899999999999999999999998653 79999999999999999999999999999999999
Q ss_pred CCCCCCCCcCC----CCCC----------cc------CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCc--eEEE
Q 023583 189 PEVPRGGERAA----MGPK----------LQ------NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL--LSAK 246 (280)
Q Consensus 189 a~~~~~~~~~~----~~~~----------~~------~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v--~~~~ 246 (280)
++......... .+.. .. ........+.++|||+|||+.+++++|+++|++||.| ..++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 87543211100 0000 00 0011123456789999999999999999999999999 8999
Q ss_pred EeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 247 VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 247 i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++.+. |.++|+|||+|.+.++|.+|+..|||.
T Consensus 157 ~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 157 VFSGK--SERSSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp ECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTC
T ss_pred EEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 88764 566799999999999999999999984
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=4.8e-33 Score=221.60 Aligned_cols=149 Identities=27% Similarity=0.534 Sum_probs=136.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+.++|||+|||+++|+++|+++|+.||.|..++++++..+|+++|||||+|.+.++|.+|++ ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 56799999999999999999999999999999999998899999999999999999999998 4678999999998765
Q ss_pred CCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHH
Q 023583 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDL 270 (280)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A 270 (280)
.... ....++|||+|||+.+++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|
T Consensus 80 ~~~~-----------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 80 PRDE-----------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp CHHH-----------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred chhh-----------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 3211 12346899999999999999999999999999999999988999999999999999999
Q ss_pred HHHHHHhcC
Q 023583 271 QSALDAMNG 279 (280)
Q Consensus 271 ~~Al~~lnG 279 (280)
.+|++ +||
T Consensus 143 ~~A~~-~~~ 150 (167)
T 2cjk_A 143 DRVCQ-NKF 150 (167)
T ss_dssp HHHHH-CSE
T ss_pred HHHHh-CCC
Confidence 99998 776
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=4.3e-32 Score=221.95 Aligned_cols=164 Identities=26% Similarity=0.472 Sum_probs=134.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHcc----C-------CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEA----G-------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 178 (280)
...++|||+|||+++++++|+++|+.| | .|..+.+ ++++|||||+|.+.++|.+|+ .|+|..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357899999999999999999999999 4 4555554 456899999999999999999 799999
Q ss_pred cCCceeEEecCCCCCCCCcCCCCCCc---cCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCC
Q 023583 179 IGGRTVKVNFPEVPRGGERAAMGPKL---QNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR 255 (280)
Q Consensus 179 i~g~~l~v~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~ 255 (280)
|.|+.|.|.++............... ...........++|||+|||+.+++++|+++|++||.|..+.+..++.+|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~ 154 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGL 154 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCS
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCC
Confidence 99999999998754332211111100 001112235678999999999999999999999999999999999988999
Q ss_pred CccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 256 SRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 256 ~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++|||||+|.+.++|.+|++.|||.
T Consensus 155 ~~g~afV~f~~~~~a~~A~~~l~g~ 179 (198)
T 2yh0_A 155 SKGYAFCEYVDINVTDQAIAGLNGM 179 (198)
T ss_dssp EEEEEEEEESSSSHHHHHHHHHTTC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCC
Confidence 9999999999999999999999984
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=4.5e-31 Score=211.11 Aligned_cols=147 Identities=27% Similarity=0.529 Sum_probs=131.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHcc----C-------CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEA----G-------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 178 (280)
++.++|||+|||+++|+++|+++|+.| | .|..+.+. +++|||||+|.+.++|.+|+ .++|..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 356899999999999999999999999 6 66666664 44899999999999999999 799999
Q ss_pred cCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCcc
Q 023583 179 IGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRG 258 (280)
Q Consensus 179 i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg 258 (280)
+.|+.|.|.++..... ....++|||+|||+.+++++|+++|++||.|..+.+..++.+|.++|
T Consensus 75 ~~g~~i~v~~~~~~~~-----------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP-----------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp ETTEECEEECCSSCCC-----------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred ecCceeeecCCcccCC-----------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 9999999998653321 12357899999999999999999999999999999999988999999
Q ss_pred EEEEEeCCHHHHHHHHHHhcCC
Q 023583 259 FGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 259 ~afV~f~~~e~A~~Al~~lnG~ 280 (280)
||||+|.+.++|.+|++.|||.
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~ 159 (172)
T 2g4b_A 138 YAFCEYVDINVTDQAIAGLNGM 159 (172)
T ss_dssp EEEEEESSTTHHHHHHHHHTTC
T ss_pred EEEEEeCCHHHHHHHHHHcCCC
Confidence 9999999999999999999984
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.1e-30 Score=223.86 Aligned_cols=157 Identities=24% Similarity=0.340 Sum_probs=143.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
....++|||+|||+++++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.++|..++|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCC-CHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGL-TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
+....... .....++|||+|||+.+ ++++|+++|+.||.|..+.+..+. +|.++|+|||+|.+.
T Consensus 172 a~~~~~~~--------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 236 (284)
T 3smz_A 172 TDAGQLTP--------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETA 236 (284)
T ss_dssp CCGGGCCT--------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSH
T ss_pred CCCCCCCc--------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCH
Confidence 86432211 12346799999999995 999999999999999999999887 799999999999999
Q ss_pred HHHHHHHHHhcCC
Q 023583 268 EDLQSALDAMNGV 280 (280)
Q Consensus 268 e~A~~Al~~lnG~ 280 (280)
++|.+|+..|||.
T Consensus 237 ~~A~~A~~~l~g~ 249 (284)
T 3smz_A 237 EMAEEAQQQADGL 249 (284)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999984
No 13
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=6.7e-30 Score=220.51 Aligned_cols=165 Identities=19% Similarity=0.287 Sum_probs=134.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHH----HHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 183 (280)
+..+.++|||+|||+++++++|+ ++|+.||.|..|++.+ +++++|||||+|.+.++|.+|++.|+|..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678899999999999999977 8999999999999875 6889999999999999999999999999999999
Q ss_pred eEEecCCCCCCCCcCCCCCC------------------------------------------------------------
Q 023583 184 VKVNFPEVPRGGERAAMGPK------------------------------------------------------------ 203 (280)
Q Consensus 184 l~v~~a~~~~~~~~~~~~~~------------------------------------------------------------ 203 (280)
|.|.++...........+..
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 99999864332000000000
Q ss_pred ---------------cc-------------------CCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEee
Q 023583 204 ---------------LQ-------------------NSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIF 249 (280)
Q Consensus 204 ---------------~~-------------------~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~ 249 (280)
.. ........+.++|||+|||..+++++|+++|+.||.|..++++.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 00 00001223457899999999999999999999999999999985
Q ss_pred eCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 250 ERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 250 ~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++ +|||||+|.+.++|.+|++.|||.
T Consensus 242 ~~-----~g~afV~f~~~~~A~~A~~~l~g~ 267 (282)
T 3pgw_A 242 GR-----HDIAFVEFDNEVQAGAARDALQGF 267 (282)
T ss_pred CC-----CcEEEEEeCCHHHHHHHHHHcCCc
Confidence 53 689999999999999999999984
No 14
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.2e-29 Score=212.59 Aligned_cols=163 Identities=17% Similarity=0.253 Sum_probs=134.5
Q ss_pred cCCCCCeEEEeCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 108 ASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
...+.++|||+|||+ ++++++|+++|+.||.|..|+++++. +|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345778999999999 99999999999999999999999875 899999999999999999999999999999999
Q ss_pred ecCCCCCCCCcCCC------------------CCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCC-CceEEEE
Q 023583 187 NFPEVPRGGERAAM------------------GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKV 247 (280)
Q Consensus 187 ~~a~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-~v~~~~i 247 (280)
.++........... .............+.++|||+|||+.+++++|+++|+.|| .|..+++
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 99874421111000 0000000112234568999999999999999999999999 9999998
Q ss_pred eeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 248 IFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 248 ~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.+ .+|||||+|.+.++|.+|++.|||.
T Consensus 185 ~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~ 212 (229)
T 2adc_A 185 FQK-----DRKMALIQMGSVEEAVQALIDLHNH 212 (229)
T ss_dssp CSS-----STTCEEEEESSHHHHHHHHHHHTTC
T ss_pred EEC-----CCcEEEEEECCHHHHHHHHHHHCCC
Confidence 653 3799999999999999999999984
No 15
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=2.8e-30 Score=220.67 Aligned_cols=142 Identities=28% Similarity=0.444 Sum_probs=131.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++|+++|+++|+.||.|..|.+.++ +|||||+|.+.++|.+|+..++|..|.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3456679999999999999999999999999999999643 7999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
++. +..+|||+|||+.+++++|+++|+.||.|..|.++.+. +|+++|||||+|.+.
T Consensus 92 ~a~-----------------------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~ 147 (261)
T 3sde_A 92 FAT-----------------------HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAK 147 (261)
T ss_dssp ECC-----------------------CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSH
T ss_pred ecc-----------------------cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCH
Confidence 875 24689999999999999999999999999999999994 899999999999999
Q ss_pred HHHHHHHHHhcC
Q 023583 268 EDLQSALDAMNG 279 (280)
Q Consensus 268 e~A~~Al~~lnG 279 (280)
++|.+|+..|||
T Consensus 148 ~~A~~A~~~l~~ 159 (261)
T 3sde_A 148 PPARKALERCGD 159 (261)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999953
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3.8e-31 Score=212.36 Aligned_cols=151 Identities=23% Similarity=0.410 Sum_probs=131.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|..||.+.. .++.+..+|+++|||||+|.+.++|.+|++ |+|..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 34567889999999999999999999999998766 344555578899999999999999999995 9999999999999
Q ss_pred ecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCC
Q 023583 187 NFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET 266 (280)
Q Consensus 187 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~ 266 (280)
.++...... .....++|||+|||+.+++++|+++|+.||.|..+ ..+|.++|||||+|.+
T Consensus 86 ~~~~~~~~~---------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~ 145 (175)
T 1fje_B 86 EKPKGRDSK---------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKS 145 (175)
T ss_dssp ECCCCSSCS---------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSS
T ss_pred ecCCCcccc---------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECC
Confidence 998754221 12245799999999999999999999999987765 4588999999999999
Q ss_pred HHHHHHHHHHhcC
Q 023583 267 AEDLQSALDAMNG 279 (280)
Q Consensus 267 ~e~A~~Al~~lnG 279 (280)
.++|.+|++.|||
T Consensus 146 ~~~A~~A~~~l~g 158 (175)
T 1fje_B 146 EADAEKNLEEKQG 158 (175)
T ss_dssp HHHHHHHHHHHTE
T ss_pred HHHHHHHHHHhCC
Confidence 9999999999997
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.3e-29 Score=207.62 Aligned_cols=160 Identities=16% Similarity=0.253 Sum_probs=132.7
Q ss_pred CCCeEEEeCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 111 EAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 111 ~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
..++|||+|||+ ++++++|+++|+.||.|..|+++++. +|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998775 899999999999999999999999999999999988
Q ss_pred CCCCCCCcCCC------------------CCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCC-CceEEEEeee
Q 023583 190 EVPRGGERAAM------------------GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFE 250 (280)
Q Consensus 190 ~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-~v~~~~i~~~ 250 (280)
........... .............+.++|||+|||..+++++|+++|+.|| .|..++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 64421111000 0000011112234578999999999999999999999999 9999998754
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 251 RYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 251 ~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+|+|||+|.+.++|.+|+..|||.
T Consensus 157 -----~~g~afV~f~~~~~A~~A~~~l~g~ 181 (198)
T 1qm9_A 157 -----DRKMALIQMGSVEEAVQALIDLHNH 181 (198)
T ss_dssp -----TSSCEEEECSSHHHHHHHHHHHTSS
T ss_pred -----CCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 2799999999999999999999984
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=5.8e-30 Score=222.01 Aligned_cols=159 Identities=21% Similarity=0.307 Sum_probs=133.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
...++|||+|||+.+++++|+++|+.|| .|..+.++.+.. |.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 4678999999999999999999999999 999999998874 88999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCC-CCHHHHHHHhccCCCceEEEEeeeCC-CCCCccEEEEEeCC
Q 023583 189 PEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERY-TGRSRGFGFVTFET 266 (280)
Q Consensus 189 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~v~~~~i~~~~~-~g~~kg~afV~f~~ 266 (280)
+......... .......++|||+|||+. +++++|+++|+.||.|..++++.+.. +|.++|||||+|.+
T Consensus 194 a~~~~~~~~~----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~ 263 (292)
T 2ghp_A 194 SNPLEKSKRT----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFEN 263 (292)
T ss_dssp CCCC-------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESS
T ss_pred CCCCcccccc----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCC
Confidence 8754332221 122345689999999999 99999999999999999999999875 59999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 023583 267 AEDLQSALDAMNGV 280 (280)
Q Consensus 267 ~e~A~~Al~~lnG~ 280 (280)
.++|.+|+ .|||.
T Consensus 264 ~~~A~~A~-~l~g~ 276 (292)
T 2ghp_A 264 KDSAERAL-QMNRS 276 (292)
T ss_dssp HHHHHHHG-GGTTE
T ss_pred HHHHHHHH-HhcCC
Confidence 99999999 99983
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6.5e-30 Score=220.83 Aligned_cols=141 Identities=21% Similarity=0.370 Sum_probs=132.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.++|||+|||+++|+++|+++|+.|| |..+.+ ++++|||||+|.+.++|.+|++.++|..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~ 92 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQ 92 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEec
Confidence 3668999999999999999999999999 988887 556899999999999999999999999999999999974
Q ss_pred CCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHH
Q 023583 190 EVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAED 269 (280)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~ 269 (280)
. ..++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++
T Consensus 93 ~-----------------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~ 149 (284)
T 3smz_A 93 P-----------------------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 149 (284)
T ss_dssp C-----------------------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred C-----------------------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHH
Confidence 3 23689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 023583 270 LQSALDAMNGV 280 (280)
Q Consensus 270 A~~Al~~lnG~ 280 (280)
|.+|+..|||.
T Consensus 150 a~~A~~~l~~~ 160 (284)
T 3smz_A 150 AARAKSDLLGK 160 (284)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 99999999984
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.3e-29 Score=219.73 Aligned_cols=148 Identities=20% Similarity=0.311 Sum_probs=125.8
Q ss_pred ccccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 105 KVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 105 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
......+.++|||+|||+++|+++|+++|+.||+|..|+++++... ++|||||+|.+.++|.+|++ ++|..+.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEE
Confidence 3445667899999999999999999999999999999999998733 58999999999999999996 89999999999
Q ss_pred EEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCC-CceEEEEeeeCCCCCCccEEEEE
Q 023583 185 KVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVT 263 (280)
Q Consensus 185 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-~v~~~~i~~~~~~g~~kg~afV~ 263 (280)
.|.++. .++|||+|||+.+++++|+++|+.|| .|..+.++.+.. |.++|||||+
T Consensus 111 ~v~~~~------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~ 165 (292)
T 2ghp_A 111 IVSHLT------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYID 165 (292)
T ss_dssp EEEECC------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEE
T ss_pred EEEECC------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEE
Confidence 999752 57999999999999999999999999 999999998874 8899999999
Q ss_pred eCCHHHHHHHHHHhcCC
Q 023583 264 FETAEDLQSALDAMNGV 280 (280)
Q Consensus 264 f~~~e~A~~Al~~lnG~ 280 (280)
|.+.++|.+|+..|||.
T Consensus 166 f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 166 VTSKEDARYCVEKLNGL 182 (292)
T ss_dssp CSSHHHHHHHHHHHTTC
T ss_pred ECCHHHHHHHHHHhCCC
Confidence 99999999999999984
No 21
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=1.3e-23 Score=191.13 Aligned_cols=167 Identities=22% Similarity=0.329 Sum_probs=113.3
Q ss_pred ecCCCCCcccCccCCCCCCCCccCCCCCCcccccccccccccccccCCCCCcccCCCCCCCccchhhh-------h----
Q 023583 25 TQIPTNHLPSLFKTKSPKPLKLEKAQNPSALHLSLLSLSYFRQFSASFDGFQVTEDSQDEPETEQEEE-------E---- 93 (280)
Q Consensus 25 t~~~p~~l~~lf~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---- 93 (280)
|++|||||+.||.|.||++|++|+...|..... ......+..+...+............+...+... +
T Consensus 2 t~~lPp~L~~lF~p~pPl~~~~P~~~~p~~~~~-~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~ 80 (437)
T 3pgw_S 2 TQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHH-NQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQ 80 (437)
T ss_pred CCcCCccHHHhcCCCCCCcCCCCcccccccccC-CCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999988765532210 0001111112221211111110000000000000 0
Q ss_pred ---hhhhhhcccCcccccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHH
Q 023583 94 ---EEEAVEEEEEPKVAASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEA 170 (280)
Q Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a 170 (280)
.................+.++|||+|||+.+|+++|..+|+.||.|..|.|+.+..+|+++|||||+|.+.++|.+|
T Consensus 81 ~~~~~~~~~~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 160 (437)
T 3pgw_S 81 EVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160 (437)
T ss_pred HHHHhhhhcCCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHH
Confidence 00011111122233445678999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhhCCCcCCceeEEecCCCC
Q 023583 171 IRLFDGSQIGGRTVKVNFPEVP 192 (280)
Q Consensus 171 ~~~l~g~~i~g~~l~v~~a~~~ 192 (280)
|+.|||..|.|+.|.|.++...
T Consensus 161 i~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 161 YKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred HHHcCCCEECCEEEEEEEeCCC
Confidence 9999999999999999998743
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=3.5e-23 Score=154.74 Aligned_cols=110 Identities=25% Similarity=0.414 Sum_probs=75.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
...+|||+|||+++++++|+++|+.||.|..|+++++. +.++|||||+|.+.++|.+|++.|+|..|+|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999986 5589999999999999999999999999999999999987
Q ss_pred CCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHH
Q 023583 191 VPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQG 231 (280)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 231 (280)
......... ........+|||+|||..+|++.
T Consensus 82 ~~~~~~~~~---------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAEL---------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC-------------------------------------
T ss_pred Ccccccccc---------ccccCCCCceEeCCCCCCccccc
Confidence 543222111 11112345799999999998863
No 23
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=1.1e-21 Score=154.82 Aligned_cols=134 Identities=18% Similarity=0.222 Sum_probs=101.6
Q ss_pred EEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEE
Q 023583 141 SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYA 220 (280)
Q Consensus 141 ~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 220 (280)
.+.++++. .+++|||||+|.+.++|++|++.+++....+....+.......... ...............++|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~v 75 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT----EGSHHHHHHMDVEGMTSLKV 75 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE----CCCCCSSCCCCCCBCCEEEE
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc----ccccccccccCCCCCCEEEE
Confidence 35667775 3689999999999999999999888754444444443222110000 00001111122345689999
Q ss_pred cCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 221 GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 221 ~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999989999999999999999999999999983
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=142.40 Aligned_cols=81 Identities=32% Similarity=0.586 Sum_probs=77.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.++|||+|||+++|+++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 023583 190 E 190 (280)
Q Consensus 190 ~ 190 (280)
+
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 5
No 25
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=139.31 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=78.7
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.++|||+|||+++++++|+++|++||.|..+.+++|..+++++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 023583 190 EV 191 (280)
Q Consensus 190 ~~ 191 (280)
..
T Consensus 84 ~~ 85 (110)
T 3s8s_A 84 IK 85 (110)
T ss_dssp ST
T ss_pred CC
Confidence 63
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=3.9e-21 Score=137.50 Aligned_cols=82 Identities=17% Similarity=0.350 Sum_probs=76.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh-hCCCcCCceeEEecC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVNFP 189 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~g~~i~g~~l~v~~a 189 (280)
+++|||+|||+++|+++|+++|+.|| .|..|++++++.+|+++|||||+|.+.++|.+|++.+ ++..++||+|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 8999999999999999999999999999999999876 567899999999998
Q ss_pred CCCC
Q 023583 190 EVPR 193 (280)
Q Consensus 190 ~~~~ 193 (280)
..+.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7543
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=9.2e-21 Score=136.38 Aligned_cols=81 Identities=21% Similarity=0.458 Sum_probs=75.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCC--eeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCC----CcCCce
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGT--VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS----QIGGRT 183 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~--i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~----~i~g~~ 183 (280)
..-.+|||+|||+++|+++|+++|++||. |..|++++|+.+|+++|||||+|.+.++|.+|++.|+|. .|+||+
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45579999999999999999999999995 679999999999999999999999999999999999997 489999
Q ss_pred eEEecCC
Q 023583 184 VKVNFPE 190 (280)
Q Consensus 184 l~v~~a~ 190 (280)
|.|.+++
T Consensus 87 i~V~~Ak 93 (95)
T 2lkz_A 87 IGVDFAK 93 (95)
T ss_dssp EEEEECC
T ss_pred EEEEEcc
Confidence 9999986
No 28
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=130.26 Aligned_cols=85 Identities=28% Similarity=0.544 Sum_probs=80.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.++|||+|||+++++++|+++|+.||.|..+.++++..+++++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCCCC
Q 023583 190 EVPRG 194 (280)
Q Consensus 190 ~~~~~ 194 (280)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 76544
No 29
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=2.7e-20 Score=132.83 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=72.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccC--CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
.+|||+|||+++++++|+++|+.|| .|..+++++++.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999887
Q ss_pred CC
Q 023583 191 VP 192 (280)
Q Consensus 191 ~~ 192 (280)
.+
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 30
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=2.6e-19 Score=133.51 Aligned_cols=89 Identities=27% Similarity=0.520 Sum_probs=82.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+.+++++|+++|+.||.|..|.++++..+++++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 44557789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q 023583 187 NFPEVPRGG 195 (280)
Q Consensus 187 ~~a~~~~~~ 195 (280)
.++......
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999865543
No 31
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=129.61 Aligned_cols=82 Identities=30% Similarity=0.584 Sum_probs=76.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.++|||+|||+++++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.|+|..++|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CC
Q 023583 190 EV 191 (280)
Q Consensus 190 ~~ 191 (280)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 32
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.82 E-value=5.4e-20 Score=143.81 Aligned_cols=123 Identities=20% Similarity=0.222 Sum_probs=99.0
Q ss_pred CCceeEEEEEECCHHHHHHHHHHh-hCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCH
Q 023583 151 DRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTS 229 (280)
Q Consensus 151 ~~~~g~afV~f~~~~~a~~a~~~l-~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~ 229 (280)
.+-+|+++|+|.+.++|++|++.+ +|..++| .+.++++.......... ...............++|||+|||+.+++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nl~~~~t~ 87 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS-HHHHHHMHRDSCPLDCKVYVGNLGNNGNK 87 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS-SSCCCCSCSSSSTTSCEEEEESCCSCCSC
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc-ccccccccccCCCCCCEEEEeCCCCCCCH
Confidence 456899999999999999999999 9999999 99999876422111100 00111112233446789999999999999
Q ss_pred HHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 230 QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 230 ~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++|+++|++||.|..|+++.+ ++|||||+|.+.++|..|++.|||.
T Consensus 88 ~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 88 TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCC
Confidence 999999999999999999876 5899999999999999999999984
No 33
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=7.3e-20 Score=128.95 Aligned_cols=82 Identities=32% Similarity=0.515 Sum_probs=78.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..+.++|||+|||+++++++|+++|++||.|..+.++++..+++++|||||+|.+.++|.+|++.|+|..++|+.|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45778999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred CC
Q 023583 189 PE 190 (280)
Q Consensus 189 a~ 190 (280)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 34
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=1.4e-19 Score=126.87 Aligned_cols=80 Identities=28% Similarity=0.575 Sum_probs=76.8
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 192 (280)
.+|||+|||+++++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.|+|..++|+.|.|.++..+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999999889999999999999999999999999999999999999998743
No 35
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=130.96 Aligned_cols=87 Identities=29% Similarity=0.467 Sum_probs=81.3
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.++++..+++++|||||+|.+.++|.+|++.|+|..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023583 188 FPEVPRG 194 (280)
Q Consensus 188 ~a~~~~~ 194 (280)
++..+..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9876544
No 36
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=132.50 Aligned_cols=101 Identities=25% Similarity=0.364 Sum_probs=84.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 192 (280)
++|||+|||+++++++|+++|++||.|..+.++.+ ++|||||+|.+.++|.+|++.|+|..++|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999877 6899999999999999999999999999999999998865
Q ss_pred CCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCC
Q 023583 193 RGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGW 225 (280)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~ 225 (280)
......... ........+|||+||+.
T Consensus 76 ~~~~~~~~~-------~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRP-------PARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSC-------CCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCC-------CccccCCCceecCCCCC
Confidence 433221111 11223467899999973
No 37
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.2e-19 Score=131.00 Aligned_cols=83 Identities=25% Similarity=0.598 Sum_probs=78.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+.++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|+|..++|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q 023583 191 VPR 193 (280)
Q Consensus 191 ~~~ 193 (280)
.+.
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=130.26 Aligned_cols=86 Identities=27% Similarity=0.533 Sum_probs=80.2
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++ ++|..|+|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999 89999999999999
Q ss_pred cCCCCCC
Q 023583 188 FPEVPRG 194 (280)
Q Consensus 188 ~a~~~~~ 194 (280)
++..+..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9875543
No 39
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=3.8e-19 Score=132.91 Aligned_cols=85 Identities=29% Similarity=0.575 Sum_probs=80.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..+.++|||+|||+++++++|+++|+.||.|..|.++.+. +|+++|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 023583 189 PEVPRG 194 (280)
Q Consensus 189 a~~~~~ 194 (280)
+..+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 875543
No 40
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=132.68 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=81.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..|.+++++.+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 44557789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++.....
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99875543
No 41
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=132.51 Aligned_cols=85 Identities=25% Similarity=0.375 Sum_probs=79.8
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCCC
Q 023583 187 NFPEV 191 (280)
Q Consensus 187 ~~a~~ 191 (280)
.++..
T Consensus 98 ~~a~~ 102 (106)
T 1p27_B 98 DWCFV 102 (106)
T ss_dssp EESEE
T ss_pred EeecC
Confidence 99864
No 42
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-19 Score=130.22 Aligned_cols=84 Identities=27% Similarity=0.472 Sum_probs=79.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeE--------EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 178 (280)
....+.++|||+|||+++++++|+++|+.||.|.. +++++++.+|+++|||||+|.+.++|.+|++.|+|..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 45567889999999999999999999999999999 9999999899999999999999999999999999999
Q ss_pred cCCceeEEecCC
Q 023583 179 IGGRTVKVNFPE 190 (280)
Q Consensus 179 i~g~~l~v~~a~ 190 (280)
++|+.|.|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999863
No 43
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=2.6e-19 Score=133.56 Aligned_cols=86 Identities=31% Similarity=0.503 Sum_probs=80.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..+.++|||+|||+++++++|+++|+.||.|..++++++..+++++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 023583 189 PEVPRG 194 (280)
Q Consensus 189 a~~~~~ 194 (280)
+..+..
T Consensus 102 a~~~~~ 107 (115)
T 2cpz_A 102 KRSKND 107 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCc
Confidence 875543
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.6e-19 Score=129.37 Aligned_cols=86 Identities=27% Similarity=0.474 Sum_probs=79.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..++++.+. +|+++|||||+|.+.++|.+|++.|+|..++|+.|.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344567899999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 023583 187 NFPEVPR 193 (280)
Q Consensus 187 ~~a~~~~ 193 (280)
.++..+.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9987543
No 45
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=131.90 Aligned_cols=86 Identities=34% Similarity=0.601 Sum_probs=80.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+.+++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023583 187 NFPEVP 192 (280)
Q Consensus 187 ~~a~~~ 192 (280)
.++..+
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998643
No 46
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.3e-19 Score=129.90 Aligned_cols=85 Identities=28% Similarity=0.499 Sum_probs=78.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCC---CCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRV---TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~---~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
.+.++|||+|||+++++++|+++|+.||.|..+.++++.. +++++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 5689999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99875543
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=131.05 Aligned_cols=87 Identities=33% Similarity=0.678 Sum_probs=81.2
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.++++..+++++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44577899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023583 188 FPEVPRG 194 (280)
Q Consensus 188 ~a~~~~~ 194 (280)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9875443
No 48
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3e-19 Score=130.95 Aligned_cols=87 Identities=32% Similarity=0.531 Sum_probs=81.5
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..+.++++..+++++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44567789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 023583 187 NFPEVPR 193 (280)
Q Consensus 187 ~~a~~~~ 193 (280)
.++....
T Consensus 90 ~~a~~~~ 96 (105)
T 1x5u_A 90 NKASAHN 96 (105)
T ss_dssp EETTTTS
T ss_pred EECCCCC
Confidence 9987544
No 49
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=132.17 Aligned_cols=88 Identities=31% Similarity=0.478 Sum_probs=81.7
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|||..|+|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34556789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99875443
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=129.36 Aligned_cols=84 Identities=39% Similarity=0.579 Sum_probs=79.5
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..+.++++..+++++|||||+|.+.++|.+|++.|+|..++|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCC
Q 023583 187 NFPE 190 (280)
Q Consensus 187 ~~a~ 190 (280)
.+++
T Consensus 90 ~~a~ 93 (95)
T 2cqc_A 90 SGPS 93 (95)
T ss_dssp ECCS
T ss_pred EecC
Confidence 9876
No 51
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=130.21 Aligned_cols=85 Identities=21% Similarity=0.454 Sum_probs=80.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEE-EEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASA-EIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v-~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
.+.++|||+|||+++++++|+++|+.||.|..+ ++++++.+++++|||||+|.+.++|.+|++.|+|..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 023583 189 PEVPRG 194 (280)
Q Consensus 189 a~~~~~ 194 (280)
+..+..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 875543
No 52
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=5.9e-20 Score=133.68 Aligned_cols=80 Identities=26% Similarity=0.458 Sum_probs=76.8
Q ss_pred CCCeEEEeCCCC------CCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC-ce
Q 023583 111 EAARLYVGNLPY------SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG-RT 183 (280)
Q Consensus 111 ~~~~l~V~nLp~------~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g-~~ 183 (280)
..++|||+|||+ ++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++.|||..|.| |.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457999999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred eEEecCC
Q 023583 184 VKVNFPE 190 (280)
Q Consensus 184 l~v~~a~ 190 (280)
|.|.++.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9999875
No 53
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=6.8e-19 Score=129.06 Aligned_cols=85 Identities=24% Similarity=0.406 Sum_probs=79.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC---ceeE
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG---RTVK 185 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g---~~l~ 185 (280)
..+.++|||+|||+++++++|+++|+.||.|..+.++.+. +|+++|||||+|.+.++|.+|++.|+|..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3467899999999999999999999999999999999998 89999999999999999999999999999998 9999
Q ss_pred EecCCCCCC
Q 023583 186 VNFPEVPRG 194 (280)
Q Consensus 186 v~~a~~~~~ 194 (280)
|.++.....
T Consensus 91 V~~a~~~~~ 99 (105)
T 2dnh_A 91 VKFADTDKE 99 (105)
T ss_dssp EEESCSSCC
T ss_pred EEECccCcc
Confidence 999876544
No 54
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.7e-19 Score=131.21 Aligned_cols=88 Identities=22% Similarity=0.411 Sum_probs=81.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh------CCCcC
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD------GSQIG 180 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~------g~~i~ 180 (280)
....+.++|||+|||+++++++|+++|..||.|..|.++++..+++++|||||+|.+.++|.+|++.++ |..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345567899999999999999999999999999999999999899999999999999999999999999 99999
Q ss_pred CceeEEecCCCCCC
Q 023583 181 GRTVKVNFPEVPRG 194 (280)
Q Consensus 181 g~~l~v~~a~~~~~ 194 (280)
|+.|.|.++..+..
T Consensus 90 g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GRQLKVDLAVTRDE 103 (111)
T ss_dssp SCEEEEECCCCCCC
T ss_pred CEEEEEEECCCCcc
Confidence 99999999875433
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.6e-19 Score=129.94 Aligned_cols=88 Identities=20% Similarity=0.444 Sum_probs=81.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeec-CCCCCceeEEEEEECCHHHHHHHHHHh-hCCCcCCcee
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD-RVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTV 184 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~-~~~~~~~g~afV~f~~~~~a~~a~~~l-~g~~i~g~~l 184 (280)
....+.++|||+|||+.+++++|+++|+.||.|..|.++++ ..+++++|||||+|.+.++|.+|++.| +|..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456789999999999999999999999999999999999 788999999999999999999999999 9999999999
Q ss_pred EEecCCCCCC
Q 023583 185 KVNFPEVPRG 194 (280)
Q Consensus 185 ~v~~a~~~~~ 194 (280)
.|.++.....
T Consensus 90 ~v~~a~~~~~ 99 (107)
T 2cph_A 90 VLEWADSEVT 99 (107)
T ss_dssp EEEECCCCCC
T ss_pred EEEeCCCCCC
Confidence 9999876544
No 56
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=3.9e-19 Score=130.56 Aligned_cols=88 Identities=22% Similarity=0.389 Sum_probs=81.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCc---CCce
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI---GGRT 183 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i---~g~~ 183 (280)
....+.++|||+|||+++++++|+++|+.||.|..|++++++.+++++|||||+|.+.++|.+|++.|+|..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3445678999999999999999999999999999999999998999999999999999999999999999988 8999
Q ss_pred eEEecCCCCCC
Q 023583 184 VKVNFPEVPRG 194 (280)
Q Consensus 184 l~v~~a~~~~~ 194 (280)
|.|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999876543
No 57
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.80 E-value=2e-19 Score=133.04 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=80.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023583 187 NFPEVP 192 (280)
Q Consensus 187 ~~a~~~ 192 (280)
.++..+
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 998643
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2e-19 Score=131.25 Aligned_cols=88 Identities=31% Similarity=0.459 Sum_probs=81.7
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..|.++++..+++++|||||+|.+.++|.+|++.|+|..|+|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34577899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023583 188 FPEVPRGG 195 (280)
Q Consensus 188 ~a~~~~~~ 195 (280)
++......
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 98755443
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.3e-19 Score=128.82 Aligned_cols=86 Identities=29% Similarity=0.499 Sum_probs=79.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..+.++.+ +++++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34457889999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99876543
No 60
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=8.3e-19 Score=128.35 Aligned_cols=86 Identities=26% Similarity=0.438 Sum_probs=80.2
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHc-cCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC-cCCceeE
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAE-AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ-IGGRTVK 185 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~-i~g~~l~ 185 (280)
...+.++|||+|||+++++++|+++|+. ||.|..+.++++. +|+++|||||+|.+.++|.+|++.|+|.. ++|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4457789999999999999999999999 9999999999999 99999999999999999999999999999 9999999
Q ss_pred EecCCCCCC
Q 023583 186 VNFPEVPRG 194 (280)
Q Consensus 186 v~~a~~~~~ 194 (280)
|.++.....
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999875443
No 61
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=8.1e-19 Score=135.29 Aligned_cols=88 Identities=31% Similarity=0.465 Sum_probs=81.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
.....++|||+|||+++++++|+++|+.||.|..|.+++++.+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 023583 188 FPEVPRGG 195 (280)
Q Consensus 188 ~a~~~~~~ 195 (280)
++......
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 98865443
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=3.4e-19 Score=135.65 Aligned_cols=87 Identities=39% Similarity=0.588 Sum_probs=81.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..|.+++++.+++++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 023583 187 NFPEVPR 193 (280)
Q Consensus 187 ~~a~~~~ 193 (280)
.++..++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987543
No 63
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=128.93 Aligned_cols=83 Identities=28% Similarity=0.516 Sum_probs=78.4
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.++.+..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred cCC
Q 023583 188 FPE 190 (280)
Q Consensus 188 ~a~ 190 (280)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 864
No 64
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=4.2e-19 Score=125.64 Aligned_cols=82 Identities=24% Similarity=0.519 Sum_probs=75.8
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..+.+++++.+|+++|||||+|.+.++|.+|++ +++..++|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 344577899999999999999999999999999999999999899999999999999999999997 5888999999999
Q ss_pred ecC
Q 023583 187 NFP 189 (280)
Q Consensus 187 ~~a 189 (280)
.++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 864
No 65
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=128.72 Aligned_cols=85 Identities=27% Similarity=0.497 Sum_probs=79.9
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCee-EEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce---
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA-SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT--- 183 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~-~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~--- 183 (280)
...+.++|||+|||+++++++|+++|+.||.|. .+++++++.+++++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345778999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -eEEecCCCC
Q 023583 184 -VKVNFPEVP 192 (280)
Q Consensus 184 -l~v~~a~~~ 192 (280)
|+|.++...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999988744
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=7.3e-19 Score=128.48 Aligned_cols=86 Identities=29% Similarity=0.617 Sum_probs=79.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.|| |..|+++++..+++++|||||+|.+.++|.+|+ .|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3445678999999999999999999999997 999999999999999999999999999999999 79999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99875443
No 67
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=9.7e-20 Score=135.87 Aligned_cols=106 Identities=19% Similarity=0.307 Sum_probs=93.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.++++ +.++|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 80 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVL 80 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999865 4569999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCCC
Q 023583 188 FPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPG 241 (280)
Q Consensus 188 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~ 241 (280)
++...... ++++...++++|.++|++||.
T Consensus 81 ~a~~~~~~-------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 81 YYNANRAF-------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ECCHHHHT-------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred EecCChhh-------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 98632211 457778899999999999975
No 68
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.79 E-value=5.1e-19 Score=125.69 Aligned_cols=80 Identities=28% Similarity=0.532 Sum_probs=76.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 191 (280)
.++|||+|||+++++++|+++|+.||.|..+.++++..+++++|||||+|.+.++|.+|+ .++|..+.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999989999999999999999999999 8999999999999999864
Q ss_pred C
Q 023583 192 P 192 (280)
Q Consensus 192 ~ 192 (280)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 3
No 69
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=126.09 Aligned_cols=82 Identities=23% Similarity=0.529 Sum_probs=77.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCC-ceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR-SRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~-~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
..++|||+|||+++++++|+++|+.||.|..+.++.+..++. ++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999987766 8999999999999999999999999999999999988
Q ss_pred CCC
Q 023583 190 EVP 192 (280)
Q Consensus 190 ~~~ 192 (280)
..+
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 70
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.8e-19 Score=130.62 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=74.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.++|||+|||+++|+++|+++|+.||+|..|+++++.. |+++|||||+|.+.++|.+|+. ++|..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3458999999999999999999999999999999999986 9999999999999999999999 8999999999999876
Q ss_pred C
Q 023583 190 E 190 (280)
Q Consensus 190 ~ 190 (280)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 71
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=131.16 Aligned_cols=87 Identities=28% Similarity=0.429 Sum_probs=80.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCee--------EEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCc
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA--------SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i 179 (280)
...+.++|||+|||+++++++|+++|+.||.|. .|+++.++.+++++|||||+|.+.++|.+|++.|+|..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445678999999999999999999999999999 699999988999999999999999999999999999999
Q ss_pred CCceeEEecCCCCCC
Q 023583 180 GGRTVKVNFPEVPRG 194 (280)
Q Consensus 180 ~g~~l~v~~a~~~~~ 194 (280)
.|+.|.|.++.....
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999876543
No 72
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=126.97 Aligned_cols=82 Identities=30% Similarity=0.529 Sum_probs=77.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+.+++++|+++|+.||.|..+.++++.. ++++|||||+|.+.++|.+|++.|+|..++|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 344568999999999999999999999999999999999984 9999999999999999999999999999999999999
Q ss_pred cCC
Q 023583 188 FPE 190 (280)
Q Consensus 188 ~a~ 190 (280)
+++
T Consensus 91 ~a~ 93 (95)
T 2ywk_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred EcC
Confidence 875
No 73
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=138.87 Aligned_cols=80 Identities=24% Similarity=0.429 Sum_probs=76.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccC--CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..++|||+|||+++++++|+++|+.|| .|..|++++|+.+|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 558999999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 023583 189 PE 190 (280)
Q Consensus 189 a~ 190 (280)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 74
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-18 Score=127.62 Aligned_cols=87 Identities=34% Similarity=0.502 Sum_probs=79.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|..||.|..+.++++. +++++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 344567899999999999999999999999999999999998 6999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++.....
T Consensus 89 ~~a~~~~~ 96 (114)
T 2do0_A 89 KMDERALP 96 (114)
T ss_dssp EECSCCCC
T ss_pred EEcccCCC
Confidence 99875433
No 75
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.9e-19 Score=128.54 Aligned_cols=86 Identities=19% Similarity=0.495 Sum_probs=79.2
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCC-CCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
...+.++|||+|||+++++++|+++|+.|| |..|.++++..+ ++++|||||+|.+.++|.+|+ .|+|..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999999887 999999999999999999999 89999999999999
Q ss_pred ecCCCCCCC
Q 023583 187 NFPEVPRGG 195 (280)
Q Consensus 187 ~~a~~~~~~ 195 (280)
.++..+...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 998765443
No 76
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=3.2e-19 Score=122.64 Aligned_cols=75 Identities=28% Similarity=0.527 Sum_probs=72.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 114 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
+|||+|||+++++++|+++|+.||+|..+.+++++.+|+++|||||+|.+.++|.+|++ ++|..++|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 8999999999999874
No 77
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=128.47 Aligned_cols=83 Identities=34% Similarity=0.679 Sum_probs=78.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+.++|||+|||+.+++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q 023583 191 VPR 193 (280)
Q Consensus 191 ~~~ 193 (280)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 543
No 78
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-19 Score=126.69 Aligned_cols=82 Identities=24% Similarity=0.456 Sum_probs=77.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..+.++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|||..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35678999999999999999999999999999999999998999999999999999999999999999999999998876
Q ss_pred CC
Q 023583 189 PE 190 (280)
Q Consensus 189 a~ 190 (280)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 79
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=129.17 Aligned_cols=85 Identities=34% Similarity=0.561 Sum_probs=79.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..|++++++.+++++|||||+|.+.++|.+|++.+++ .|.|+.|.|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3445678999999999999999999999999999999999998999999999999999999999999998 899999999
Q ss_pred ecCCCC
Q 023583 187 NFPEVP 192 (280)
Q Consensus 187 ~~a~~~ 192 (280)
.++...
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 998754
No 80
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.78 E-value=2.9e-19 Score=133.89 Aligned_cols=81 Identities=33% Similarity=0.575 Sum_probs=76.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.++|||+|||+++++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999986
Q ss_pred C
Q 023583 190 E 190 (280)
Q Consensus 190 ~ 190 (280)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 3
No 81
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=1.2e-18 Score=128.16 Aligned_cols=83 Identities=29% Similarity=0.547 Sum_probs=78.3
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+.+++++|+++|+.||.|..+.++++. +|+++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 344677899999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ecCC
Q 023583 187 NFPE 190 (280)
Q Consensus 187 ~~a~ 190 (280)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9864
No 82
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.3e-19 Score=128.00 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=78.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
....++|||+|||+++++++|+++|..||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|+|..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCC
Q 023583 189 PEVP 192 (280)
Q Consensus 189 a~~~ 192 (280)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8643
No 83
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-19 Score=136.28 Aligned_cols=84 Identities=23% Similarity=0.457 Sum_probs=78.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeE--EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCC----CcCCc
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS----QIGGR 182 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~----~i~g~ 182 (280)
....++|||+|||+++|+++|+++|+.||.|.. |++++|+.+|+++|||||+|.+. +|.+|++.|+|. .++||
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346689999999999999999999999999976 99999999999999999999999 999999999999 99999
Q ss_pred eeEEecCCCCC
Q 023583 183 TVKVNFPEVPR 193 (280)
Q Consensus 183 ~l~v~~a~~~~ 193 (280)
.|.|.++....
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999987543
No 84
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=2.2e-18 Score=123.23 Aligned_cols=84 Identities=32% Similarity=0.557 Sum_probs=77.7
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.++++ +++++|||||+|.+.++|.+|++.|+|..++|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999984 78999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023583 188 FPEVPR 193 (280)
Q Consensus 188 ~a~~~~ 193 (280)
++....
T Consensus 82 ~a~~~~ 87 (92)
T 2dgv_A 82 IDRNAS 87 (92)
T ss_dssp ECSCCS
T ss_pred EcCCCC
Confidence 987543
No 85
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=9.8e-19 Score=132.52 Aligned_cols=87 Identities=24% Similarity=0.359 Sum_probs=80.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..|.++.+..+++++|||||+|.+.++|.+|++.|||..|+|+.|.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 023583 187 NFPEVPR 193 (280)
Q Consensus 187 ~~a~~~~ 193 (280)
.++....
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9986443
No 86
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-18 Score=125.26 Aligned_cols=86 Identities=26% Similarity=0.486 Sum_probs=78.0
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+.+++++|+++|+.||.|..|.++++. +.++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 345577899999999999999999999999999999999985 336899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99876443
No 87
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=9e-19 Score=128.42 Aligned_cols=87 Identities=28% Similarity=0.451 Sum_probs=80.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..|.+++++.+++++|||||+|.+.++|.+|++. +|..|.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3455678999999999999999999999999999999999998999999999999999999999998 999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++..+..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99875543
No 88
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-18 Score=127.49 Aligned_cols=86 Identities=24% Similarity=0.324 Sum_probs=79.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCC-eeEEEEe-ecCCCCCceeEEEEEECCHHHHHHHHHHhh--CCCcCCcee
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIV-YDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTV 184 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~-~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~i~g~~l 184 (280)
..+.++|||+|||+++++++|+++|..||. |..+.++ .+..+|+++|||||+|.+.++|.+|++.|+ +..++|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 456789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEecCCCCCC
Q 023583 185 KVNFPEVPRG 194 (280)
Q Consensus 185 ~v~~a~~~~~ 194 (280)
.|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999875544
No 89
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=2.2e-18 Score=135.53 Aligned_cols=87 Identities=24% Similarity=0.482 Sum_probs=81.3
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+.+++++|+++|+.||.|..|.++.+..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023583 188 FPEVPRG 194 (280)
Q Consensus 188 ~a~~~~~ 194 (280)
++.....
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9975443
No 90
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.77 E-value=4.8e-19 Score=127.41 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=76.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45899999999999999999999999999999999998899999999999999999999999999999999999999875
No 91
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.6e-18 Score=124.15 Aligned_cols=86 Identities=28% Similarity=0.550 Sum_probs=78.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..|.++++. +.++|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 445567899999999999999999999999999999999886 348999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99875543
No 92
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5e-18 Score=123.99 Aligned_cols=86 Identities=28% Similarity=0.438 Sum_probs=78.5
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|..||.|..|.+++++.+++++|||||+|.+.++|.+|++ ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344567899999999999999999999999999999999999899999999999999999999998 577999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99875543
No 93
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=123.94 Aligned_cols=80 Identities=18% Similarity=0.238 Sum_probs=72.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC--cCCcee
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ--IGGRTV 184 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~--i~g~~l 184 (280)
....+.++|||+|||+++|+++|+++|++||.|.++.+++ +||||||+|.+.++|.+|++.++|.. +.||+|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 4455789999999999999999999999999999999974 37999999999999999999999986 789999
Q ss_pred EEecCCCC
Q 023583 185 KVNFPEVP 192 (280)
Q Consensus 185 ~v~~a~~~ 192 (280)
.|.+++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99998754
No 94
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=126.60 Aligned_cols=80 Identities=14% Similarity=0.265 Sum_probs=72.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh--CCCcCCceeEE
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVKV 186 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~i~g~~l~v 186 (280)
..+.++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.++ +..|.|+.|.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999865 6999999999999999999876 47899999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++..+..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99875443
No 95
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=128.88 Aligned_cols=85 Identities=25% Similarity=0.456 Sum_probs=75.4
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..|+++++..+|+++|||||+|.+.++|.+|++.+ +..++|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999975 699999999999
Q ss_pred cCCCCC
Q 023583 188 FPEVPR 193 (280)
Q Consensus 188 ~a~~~~ 193 (280)
++....
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987543
No 96
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-19 Score=122.01 Aligned_cols=76 Identities=26% Similarity=0.517 Sum_probs=73.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
++|||+|||+++++++|+++|++||+|..+.+++++.+|+++|||||+|.+.++|.+|++.++ ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999899999999999999999999999988 9999999999875
No 97
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=121.99 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=76.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
.....++|||+|||+++++++|+++|+.| .|..++++++ .+|+++|||||+|.+.++|.+|++ +||..|+|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567899999999999999999999999 9999999999 689999999999999999999999 99999999999999
Q ss_pred cCCCC
Q 023583 188 FPEVP 192 (280)
Q Consensus 188 ~a~~~ 192 (280)
++...
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98744
No 98
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=9.3e-19 Score=130.74 Aligned_cols=83 Identities=29% Similarity=0.512 Sum_probs=77.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
+.++|||+|||+++++++|+++|..||.|..|.+++++.+++++|||||+|.+.++|.+|++. +|..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 347999999999999999999999999999999999998999999999999999999999997 9999999999999987
Q ss_pred CCCC
Q 023583 191 VPRG 194 (280)
Q Consensus 191 ~~~~ 194 (280)
.+..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 5543
No 99
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=3.5e-18 Score=129.07 Aligned_cols=81 Identities=23% Similarity=0.491 Sum_probs=76.7
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEV 191 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~ 191 (280)
.++|||+|||+++++++|+++|+.||.|..|.+++++.+|+++|||||+|.+.++|.+|+ .|+|..|+|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 479999999999999999999999999999999999889999999999999999999999 7999999999999999874
Q ss_pred CC
Q 023583 192 PR 193 (280)
Q Consensus 192 ~~ 193 (280)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 100
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=126.15 Aligned_cols=80 Identities=14% Similarity=0.251 Sum_probs=72.3
Q ss_pred ccCCCCCeEEEeCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC--cCCce
Q 023583 107 AASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ--IGGRT 183 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~--i~g~~ 183 (280)
....+.++|||+|||+ ++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++.. |.||.
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 4455789999999999 9999999999999999999999865 5899999999999999999998754 99999
Q ss_pred eEEecCCCC
Q 023583 184 VKVNFPEVP 192 (280)
Q Consensus 184 l~v~~a~~~ 192 (280)
|.|.++...
T Consensus 84 l~V~~a~~~ 92 (102)
T 1x4d_A 84 VRVHLSQKY 92 (102)
T ss_dssp CEEEEECCC
T ss_pred EEEEECCCC
Confidence 999998743
No 101
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=123.57 Aligned_cols=81 Identities=25% Similarity=0.350 Sum_probs=74.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHH----HHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 109 SDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
..+.++|||+|||+++++++|+ ++|++||.|..++++.++.+ +|||||+|.+.++|.+|++.|||..++|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3456799999999999999999 99999999999999988754 8999999999999999999999999999999
Q ss_pred EEecCCCC
Q 023583 185 KVNFPEVP 192 (280)
Q Consensus 185 ~v~~a~~~ 192 (280)
.|.++...
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99998643
No 102
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.7e-18 Score=124.00 Aligned_cols=84 Identities=29% Similarity=0.552 Sum_probs=75.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|++.||+..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999654 5689999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023583 188 FPEVPRG 194 (280)
Q Consensus 188 ~a~~~~~ 194 (280)
++.....
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9876543
No 103
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.2e-18 Score=125.30 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=75.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeE-EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS-AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~-v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
....++|||+|||+++++++|+++|+.||.|.. |.++.+ .+|+++|||||+|.+.++|.+|++. ++..|+||.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 346789999999999999999999999999987 888888 6999999999999999999999997 9999999999999
Q ss_pred cCCCC
Q 023583 188 FPEVP 192 (280)
Q Consensus 188 ~a~~~ 192 (280)
++...
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 87643
No 104
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=3.7e-18 Score=134.43 Aligned_cols=85 Identities=33% Similarity=0.553 Sum_probs=80.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
....++|||+|||+++++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 023583 189 PEVPR 193 (280)
Q Consensus 189 a~~~~ 193 (280)
+....
T Consensus 147 a~~~~ 151 (158)
T 2kn4_A 147 ARYGR 151 (158)
T ss_dssp ECCSS
T ss_pred CCCCC
Confidence 87543
No 105
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.76 E-value=4.1e-19 Score=126.54 Aligned_cols=79 Identities=39% Similarity=0.676 Sum_probs=74.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVP 192 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~ 192 (280)
++|||+|||+++++++|+++|+.||.|..+.++++..+|+++|||||+|.+.+ |.+|+..|+|..++|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999989999999999999999 99999999999999999999998744
No 106
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.9e-18 Score=120.44 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=68.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.-|||+||++.+||++|+++|.+||+|.+++++. ++|||||+|.++++|.+|++.|||..+.||.|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 456799999999999999999999999999999965 5899999999999999999999999999999999975
No 107
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=6e-18 Score=127.85 Aligned_cols=84 Identities=29% Similarity=0.521 Sum_probs=79.2
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+.+++++|+++|+.||.|..+.++++. +|+++|||||+|.+.++|.+|++.|+|..++|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023583 188 FPEVP 192 (280)
Q Consensus 188 ~a~~~ 192 (280)
++...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 98743
No 108
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=124.93 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=75.3
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
.....++|||+|||+++|+++|+++|+.||.+ .|++++++ +++++|||||+|.+.++|.+|++ +|+..|+||.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34567899999999999999999999999955 99999998 89999999999999999999996 79999999999999
Q ss_pred cCCCCC
Q 023583 188 FPEVPR 193 (280)
Q Consensus 188 ~a~~~~ 193 (280)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 876443
No 109
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=126.84 Aligned_cols=82 Identities=20% Similarity=0.333 Sum_probs=75.0
Q ss_pred ccCCCCCeEEEeCCCCCC------CHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC
Q 023583 107 AASDEAARLYVGNLPYSM------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 180 (280)
......++|||+|||+.+ ++++|+++|++||.|..+.++ +.+|+++|||||+|.+.++|.+|++.|||..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344457899999999999 789999999999999999988 357999999999999999999999999999999
Q ss_pred Cc-eeEEecCC
Q 023583 181 GR-TVKVNFPE 190 (280)
Q Consensus 181 g~-~l~v~~a~ 190 (280)
|+ .|.|.++.
T Consensus 88 g~~~l~V~~a~ 98 (105)
T 2nlw_A 88 KQHTFRVNLFT 98 (105)
T ss_dssp TTCEEEEECSC
T ss_pred CCceEEEEEcc
Confidence 98 99999876
No 110
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=7.9e-19 Score=127.65 Aligned_cols=83 Identities=20% Similarity=0.506 Sum_probs=73.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecC-CCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDR-VTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~-~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
......++|||+|||+++++++|+++|+.|| |..++++++. .+|+++|||||+|.+.++|.+|+ .|+|..|+|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3455678999999999999999999999999 9999999998 68999999999999999999999 7999999999999
Q ss_pred EecCCC
Q 023583 186 VNFPEV 191 (280)
Q Consensus 186 v~~a~~ 191 (280)
|.++..
T Consensus 92 V~~a~~ 97 (100)
T 2j76_E 92 VDVADQ 97 (100)
T ss_dssp CEECCC
T ss_pred EEeccC
Confidence 999864
No 111
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.4e-18 Score=125.07 Aligned_cols=81 Identities=32% Similarity=0.540 Sum_probs=75.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCc--------CC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI--------GG 181 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i--------~g 181 (280)
.+.++|||+|||+++++++|+++|+.||.|..++++++. +++++|||||+|.+.++|.+|++.|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 456899999999999999999999999999999999998 999999999999999999999999999999 57
Q ss_pred ceeEEecCCC
Q 023583 182 RTVKVNFPEV 191 (280)
Q Consensus 182 ~~l~v~~a~~ 191 (280)
+.|.|.++..
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 7888888763
No 112
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.4e-18 Score=125.63 Aligned_cols=82 Identities=15% Similarity=0.263 Sum_probs=73.3
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh--CCCcCCceeE
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTVK 185 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~i~g~~l~ 185 (280)
...+.++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.++ +..+.|+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3456789999999999999999999999999999999865 7999999999999999999887 4689999999
Q ss_pred EecCCCCCCC
Q 023583 186 VNFPEVPRGG 195 (280)
Q Consensus 186 v~~a~~~~~~ 195 (280)
|.++..+...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9998755443
No 113
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=128.46 Aligned_cols=82 Identities=16% Similarity=0.373 Sum_probs=73.5
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHH----HHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 183 (280)
...+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +++++|||||+|.+.++|..|++.|||..|.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999999876 6999999999987743 6789999999999999999999999999999999
Q ss_pred eEEecCCCC
Q 023583 184 VKVNFPEVP 192 (280)
Q Consensus 184 l~v~~a~~~ 192 (280)
|.|.++..+
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999998754
No 114
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.5e-19 Score=130.83 Aligned_cols=80 Identities=23% Similarity=0.419 Sum_probs=76.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..++|||+|||+++++++|+++|+.||.|..|.++.+..+++++|||||+|.+.++|.+|+ .|+|..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999988999999999999999999999 899999999999999875
Q ss_pred C
Q 023583 191 V 191 (280)
Q Consensus 191 ~ 191 (280)
.
T Consensus 103 ~ 103 (114)
T 2cq4_A 103 A 103 (114)
T ss_dssp H
T ss_pred C
Confidence 3
No 115
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=1.5e-18 Score=133.11 Aligned_cols=87 Identities=32% Similarity=0.533 Sum_probs=80.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..|.++.+..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023583 188 FPEVPRG 194 (280)
Q Consensus 188 ~a~~~~~ 194 (280)
++.....
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9875443
No 116
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=3.8e-18 Score=123.74 Aligned_cols=68 Identities=31% Similarity=0.495 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+++|||+|||+.+|+++|+++|++||.|..|++++|+.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 84 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL 84 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC
Confidence 34578999999999999999999999999999999999999999999999999999999999999984
No 117
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=131.67 Aligned_cols=80 Identities=33% Similarity=0.519 Sum_probs=76.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.++|||+|||+.+++++|+++|+.||.|..+++++++.+++++|||||+|.+.++|.+|++.|+|..|+|+.|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999875
No 118
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=2.2e-18 Score=131.97 Aligned_cols=80 Identities=24% Similarity=0.421 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCC---eeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
..+.++|||+|||+++|+++|+++|+.||. |..|++++++. |+++|||||+|.+.++|.+|++ +||..|+||.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 345689999999999999999999999999 89999999986 9999999999999999999999 999999999999
Q ss_pred EecCC
Q 023583 186 VNFPE 190 (280)
Q Consensus 186 v~~a~ 190 (280)
|.++.
T Consensus 119 V~~a~ 123 (136)
T 2hgl_A 119 VFKSH 123 (136)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99864
No 119
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-17 Score=121.77 Aligned_cols=81 Identities=19% Similarity=0.233 Sum_probs=72.1
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCC--CcCCceeE
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGS--QIGGRTVK 185 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~--~i~g~~l~ 185 (280)
...+.++|||+|||+++++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.|++. .+.|+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999998753 799999999999999999988765 49999999
Q ss_pred EecCCCCCC
Q 023583 186 VNFPEVPRG 194 (280)
Q Consensus 186 v~~a~~~~~ 194 (280)
|.++..+..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999875443
No 120
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=120.87 Aligned_cols=73 Identities=19% Similarity=0.363 Sum_probs=67.9
Q ss_pred CCeEEEeCCCCCC------CHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCc-ee
Q 023583 112 AARLYVGNLPYSM------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR-TV 184 (280)
Q Consensus 112 ~~~l~V~nLp~~~------te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~-~l 184 (280)
.++|||+|||+.+ ++++|+++|++||.|..+.+. +.+|+++|||||+|.+.++|.+|++.|||..++|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 35799999999999999999999999999999999 88
Q ss_pred EE
Q 023583 185 KV 186 (280)
Q Consensus 185 ~v 186 (280)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 121
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=126.31 Aligned_cols=84 Identities=29% Similarity=0.586 Sum_probs=76.7
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..+.++++. +.++|||||+|.+.++|.+|++.|+|..++|+.|.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 334567899999999999999999999999999999999885 458999999999999999999999999999999999
Q ss_pred ecCCCC
Q 023583 187 NFPEVP 192 (280)
Q Consensus 187 ~~a~~~ 192 (280)
.++..+
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998643
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.8e-18 Score=125.91 Aligned_cols=86 Identities=19% Similarity=0.234 Sum_probs=78.1
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHH---HHHHccCCeeEEEEeecCCCC---CceeEEEEEECCHHHHHHHHHHhhCCCcCC
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLA---EVFAEAGTVASAEIVYDRVTD---RSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~---~~F~~~G~i~~v~~~~~~~~~---~~~g~afV~f~~~~~a~~a~~~l~g~~i~g 181 (280)
.....++|||+|||+++++++|+ ++|++||.|..+.++++..++ +++|||||+|.+.++|.+|++.|||..|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34467899999999999999999 999999999999999887654 566999999999999999999999999999
Q ss_pred ceeEEecCCCCC
Q 023583 182 RTVKVNFPEVPR 193 (280)
Q Consensus 182 ~~l~v~~a~~~~ 193 (280)
+.|.|.++..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999987554
No 123
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=2.6e-18 Score=128.77 Aligned_cols=80 Identities=24% Similarity=0.397 Sum_probs=75.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCC---eeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
..+.++|||+|||+++|+++|+++|+.||. |..|+++++.. |+++|||||+|.+.++|.+|++ +||..|+||.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 446789999999999999999999999999 89999999985 9999999999999999999999 899999999999
Q ss_pred EecCC
Q 023583 186 VNFPE 190 (280)
Q Consensus 186 v~~a~ 190 (280)
|.++.
T Consensus 92 V~~a~ 96 (118)
T 2db1_A 92 VFKSH 96 (118)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99875
No 124
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.74 E-value=7.6e-18 Score=133.70 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=79.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.+..+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 148 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 023583 189 PEVPR 193 (280)
Q Consensus 189 a~~~~ 193 (280)
+....
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 87543
No 125
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.1e-18 Score=119.80 Aligned_cols=75 Identities=25% Similarity=0.450 Sum_probs=71.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 114 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
+|||+|||+++++++|+++|++||+|..+.+++++.+|+++|||||+|.+.++|.+|++. ++..++|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999998999999999999999999999994 999999999999864
No 126
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=117.48 Aligned_cols=79 Identities=25% Similarity=0.506 Sum_probs=72.9
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.++ +|||||+|.+.++|.+|++.|+|..++|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34577899999999999999999999999999999997 6899999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023583 188 FPEVPRG 194 (280)
Q Consensus 188 ~a~~~~~ 194 (280)
++..+..
T Consensus 76 ~a~~~~~ 82 (90)
T 2dnq_A 76 ASKNKSK 82 (90)
T ss_dssp CSSCCCC
T ss_pred ECCCCCC
Confidence 9875543
No 127
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=121.11 Aligned_cols=82 Identities=11% Similarity=0.218 Sum_probs=72.5
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh--CCCcCCcee
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD--GSQIGGRTV 184 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~--g~~i~g~~l 184 (280)
....+.++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.++ +..+.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 83 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPI 83 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEE
Confidence 33456789999999999999999999999999999998754 7999999999999999999775 567999999
Q ss_pred EEecCCCCCC
Q 023583 185 KVNFPEVPRG 194 (280)
Q Consensus 185 ~v~~a~~~~~ 194 (280)
.|.++.....
T Consensus 84 ~V~~a~~~~~ 93 (101)
T 2cq1_A 84 YIQYSNHKEL 93 (101)
T ss_dssp EEEECSCSSC
T ss_pred EEEEcCcccC
Confidence 9999875443
No 128
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=128.65 Aligned_cols=82 Identities=16% Similarity=0.315 Sum_probs=76.6
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCe-eEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTV-ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
...+.++|||+|||+++++++|+++|+.||.| ..|+++++. +|+++|||||+|.+.++|.+|++. +|..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 34567899999999999999999999999999 899999998 999999999999999999999996 999999999999
Q ss_pred ecCCC
Q 023583 187 NFPEV 191 (280)
Q Consensus 187 ~~a~~ 191 (280)
.++..
T Consensus 89 ~~a~~ 93 (114)
T 2cpy_A 89 HVVTL 93 (114)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98763
No 129
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-18 Score=127.24 Aligned_cols=83 Identities=25% Similarity=0.370 Sum_probs=75.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..+.++|||+|||+++++++|+++|+.||.|.. .++.+..+|+++|||||+|.+.++|.+|++ |+|..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999988 667777789999999999999999999999 999999999999999
Q ss_pred CCCCC
Q 023583 189 PEVPR 193 (280)
Q Consensus 189 a~~~~ 193 (280)
+....
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 87543
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-18 Score=130.54 Aligned_cols=81 Identities=17% Similarity=0.299 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..+.++|||+|||+++++++|+++|..||.|..+.++.+..+|+++|||||+|.+.++|.+|++ +||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4466899999999999999999999999999987777777799999999999999999999999 999999999999998
Q ss_pred CC
Q 023583 189 PE 190 (280)
Q Consensus 189 a~ 190 (280)
+.
T Consensus 101 a~ 102 (124)
T 1wel_A 101 IT 102 (124)
T ss_dssp EC
T ss_pred CC
Confidence 75
No 131
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.1e-18 Score=128.50 Aligned_cols=86 Identities=26% Similarity=0.402 Sum_probs=74.2
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..+.++|||+|||+++++++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999995433322223789999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 023583 189 PEVPRG 194 (280)
Q Consensus 189 a~~~~~ 194 (280)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 876543
No 132
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=122.15 Aligned_cols=82 Identities=30% Similarity=0.525 Sum_probs=74.3
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.| +++.+ .+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 44578999999999999999999999999977 56666 589999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023583 188 FPEVPR 193 (280)
Q Consensus 188 ~a~~~~ 193 (280)
++..+.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 987553
No 133
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=5.5e-18 Score=125.18 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=71.5
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
....+|||+|||+++++++|+++|+.|| .|..+.+.. ++++|||||+|.+.++|.+|++.|||..++|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3567999999999999999999999999 899998853 34799999999999999999999999999999999999
Q ss_pred CCCC
Q 023583 189 PEVP 192 (280)
Q Consensus 189 a~~~ 192 (280)
+..+
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8643
No 134
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=120.38 Aligned_cols=85 Identities=34% Similarity=0.494 Sum_probs=76.9
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.|+ .+.++.+..+++++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 4456788999999999999999999999773 6788888889999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++..+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99876543
No 135
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=7.2e-18 Score=140.74 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=76.1
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccC--CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAG--TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..++|||+|||+++|+++|+++|+.|| .|..|+|++++.+++++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 023583 189 PE 190 (280)
Q Consensus 189 a~ 190 (280)
+.
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 136
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=123.22 Aligned_cols=68 Identities=10% Similarity=0.131 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|++||.|..|.+++|+.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~ 71 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT 71 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999984
No 137
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=9.5e-18 Score=133.12 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=65.7
Q ss_pred EEECCHHHHHHHHHHhhCCCcC--CceeEEecCCCCCCCCcCCC---CCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHH
Q 023583 159 VTMGSVEEAKEAIRLFDGSQIG--GRTVKVNFPEVPRGGERAAM---GPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLR 233 (280)
Q Consensus 159 V~f~~~~~a~~a~~~l~g~~i~--g~~l~v~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~ 233 (280)
.+|.+.+++..|+..+++.... |+...+.............. .............+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6889999999999988887665 66666665432221111111 001011122233456789999999999999999
Q ss_pred HHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 234 DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 234 ~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++|++||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||.
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999984
No 138
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=126.14 Aligned_cols=81 Identities=20% Similarity=0.304 Sum_probs=75.7
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCC---eeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGT---VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
.....++|||+|||+++|+++|+++|+.||. |..|+++++.. |+++|||||+|.+.++|.+|++ ++|..++||.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 3456789999999999999999999999998 89999999986 9999999999999999999999 89999999999
Q ss_pred EEecCC
Q 023583 185 KVNFPE 190 (280)
Q Consensus 185 ~v~~a~ 190 (280)
.|.++.
T Consensus 85 ~V~~a~ 90 (107)
T 2lmi_A 85 EVYEIN 90 (107)
T ss_dssp CCEECC
T ss_pred EEEECC
Confidence 999875
No 139
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.4e-17 Score=119.01 Aligned_cols=80 Identities=26% Similarity=0.450 Sum_probs=71.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
.....++|||+|||+++++++|+++|+.||.|. +.++. ++++|||||+|.+.++|.+|++.|||..|+|+.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 344578999999999999999999999999997 66664 3678999999999999999999999999999999999
Q ss_pred cCCCC
Q 023583 188 FPEVP 192 (280)
Q Consensus 188 ~a~~~ 192 (280)
++..+
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98754
No 140
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=118.57 Aligned_cols=80 Identities=24% Similarity=0.455 Sum_probs=73.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC--CceeE
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG--GRTVK 185 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~--g~~l~ 185 (280)
...+.++|||+|||+++++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.|||..+. |+.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456789999999999999999999999999999998754 789999999999999999999999999 99999
Q ss_pred EecCCCCC
Q 023583 186 VNFPEVPR 193 (280)
Q Consensus 186 v~~a~~~~ 193 (280)
|.++..+.
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987543
No 141
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=116.37 Aligned_cols=78 Identities=27% Similarity=0.544 Sum_probs=72.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.++ +|||||+|.+.++|.+|++.|+|..++|+.|.|.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999997 4599999999999999999999999999999999
Q ss_pred cCCCCC
Q 023583 188 FPEVPR 193 (280)
Q Consensus 188 ~a~~~~ 193 (280)
++....
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 987553
No 142
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.72 E-value=9.2e-18 Score=120.61 Aligned_cols=67 Identities=19% Similarity=0.297 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCC--ceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPG--LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~--v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...+|||+|||+.+|+++|+++|++||. +.+|++++|+.+|++||||||+|.+.++|.+|++.|||.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 4579999999999999999999999995 679999999999999999999999999999999999983
No 143
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=120.17 Aligned_cols=79 Identities=23% Similarity=0.454 Sum_probs=73.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
....++|||+|||+++++++|+++|+.||.|..|.++++ +|||||+|.+.++|.+|++.|+|..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 346789999999999999999999999999999999866 79999999999999999999999999999999999
Q ss_pred CCCCC
Q 023583 189 PEVPR 193 (280)
Q Consensus 189 a~~~~ 193 (280)
+....
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87544
No 144
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.7e-17 Score=119.44 Aligned_cols=79 Identities=25% Similarity=0.335 Sum_probs=72.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC-----ce
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG-----RT 183 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g-----~~ 183 (280)
....++|||+|||+++++++|+++|..||.|..+.++.+ |||||+|.+.++|.+|++.|||..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346789999999999999999999999999999999865 899999999999999999999999999 99
Q ss_pred eEEecCCCCCC
Q 023583 184 VKVNFPEVPRG 194 (280)
Q Consensus 184 l~v~~a~~~~~ 194 (280)
|.|.++.....
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999876443
No 145
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.1e-17 Score=124.32 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=71.0
Q ss_pred CeEEEeCC----CCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECC----HHH----HHHHHH--HhhCCC
Q 023583 113 ARLYVGNL----PYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS----VEE----AKEAIR--LFDGSQ 178 (280)
Q Consensus 113 ~~l~V~nL----p~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~----a~~a~~--~l~g~~ 178 (280)
..|||+|| |+.+++.+|+++|+.||+|..+.++.|+.||+++|||||+|.+ .++ |.+|++ .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 689999
Q ss_pred cCCceeEEecCC
Q 023583 179 IGGRTVKVNFPE 190 (280)
Q Consensus 179 i~g~~l~v~~a~ 190 (280)
|+||.|+|.+-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999754
No 146
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=123.03 Aligned_cols=78 Identities=21% Similarity=0.264 Sum_probs=70.3
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhC--CCcCCceeE
Q 023583 109 SDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG--SQIGGRTVK 185 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g--~~i~g~~l~ 185 (280)
..+.++|||+|||++ +++++|+++|++||.|.+|++++ ++|||||+|.+.++|.+|++.|++ ..|.||.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 99999999999999999999974 379999999999999999998875 569999999
Q ss_pred EecCCCC
Q 023583 186 VNFPEVP 192 (280)
Q Consensus 186 v~~a~~~ 192 (280)
|.++...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9998643
No 147
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=122.24 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=71.3
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..+|||+|||+++++++|+++|+.| .|..|+|++++. |+++|||||+|.+.++|.+|+ .+||..|+||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 899999999984 999999999999999999999 489999999999998765
No 148
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3e-17 Score=118.95 Aligned_cols=80 Identities=28% Similarity=0.487 Sum_probs=73.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|||+++++++|+++|+.||.|..+++.++ +|||||+|.+.++|.+|++.|+|..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34456789999999999999999999999999999999854 799999999999999999999999999999999
Q ss_pred ecCCCC
Q 023583 187 NFPEVP 192 (280)
Q Consensus 187 ~~a~~~ 192 (280)
.++..+
T Consensus 84 ~~a~~~ 89 (99)
T 2cpj_A 84 RFACHS 89 (99)
T ss_dssp EESSCC
T ss_pred EEcCCC
Confidence 998754
No 149
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=5.9e-17 Score=115.75 Aligned_cols=79 Identities=30% Similarity=0.502 Sum_probs=72.3
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.++ ++||||+|.+.++|.+|++.|||..+.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999997 4599999999999999999999999999999999
Q ss_pred cCCCCCC
Q 023583 188 FPEVPRG 194 (280)
Q Consensus 188 ~a~~~~~ 194 (280)
++..+..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9875443
No 150
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1e-17 Score=126.07 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCe----eEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTV----ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i----~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
.+..+|||+|||+++|+++|+++|+.||.| ..|+|+++. +|+++|||||+|.+.++|.+|++. ++..|+||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457899999999999999999999999985 689999985 899999999999999999999996 99999999999
Q ss_pred EecCC
Q 023583 186 VNFPE 190 (280)
Q Consensus 186 v~~a~ 190 (280)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98764
No 151
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3.4e-17 Score=120.67 Aligned_cols=78 Identities=27% Similarity=0.533 Sum_probs=71.9
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+++++++|+++|+.||.|..+.++ +|||||+|.+.++|.+|++.|+|..++|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023583 188 FPEVPR 193 (280)
Q Consensus 188 ~a~~~~ 193 (280)
++....
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 987543
No 152
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.2e-19 Score=132.15 Aligned_cols=86 Identities=27% Similarity=0.451 Sum_probs=80.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeE--------EEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVAS--------AEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 180 (280)
..+.++|||+|||+++++++|+++|+.||.|.. +.++.++.+++++|||||+|.+.++|.+|++.|+|..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 446789999999999999999999999999998 999999889999999999999999999999999999999
Q ss_pred CceeEEecCCCCCC
Q 023583 181 GRTVKVNFPEVPRG 194 (280)
Q Consensus 181 g~~l~v~~a~~~~~ 194 (280)
|+.|.|.++..+..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999875543
No 153
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=5.7e-17 Score=117.10 Aligned_cols=78 Identities=22% Similarity=0.439 Sum_probs=70.6
Q ss_pred cccCCCCCeEEEeCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 106 VAASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 106 ~~~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
.....+.++|||+|||+ ++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|+|..++|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556789999999998 99999999999999999999983 7999999999999999999999999999999
Q ss_pred EEecCCC
Q 023583 185 KVNFPEV 191 (280)
Q Consensus 185 ~v~~a~~ 191 (280)
.|.++..
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 9999764
No 154
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=114.95 Aligned_cols=77 Identities=21% Similarity=0.369 Sum_probs=71.0
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHh-hCCCcCCceeEE
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLF-DGSQIGGRTVKV 186 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l-~g~~i~g~~l~v 186 (280)
...+.++|||+|||+++++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|++.| +|..++|+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456789999999999999999999999999999999864 799999999999999999988 999999999999
Q ss_pred ecCC
Q 023583 187 NFPE 190 (280)
Q Consensus 187 ~~a~ 190 (280)
.+++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9863
No 155
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=4.1e-18 Score=132.01 Aligned_cols=88 Identities=22% Similarity=0.342 Sum_probs=75.2
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEE--E---eecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE--I---VYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~--~---~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g 181 (280)
....+.++|||+|||+++|+++|+.+|+.||.|..+. + ++...+|+++|||||+|.+.++|.+|++.|||..|.|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 4456788999999999999999999999999987741 1 1112368999999999999999999999999999999
Q ss_pred ceeEEecCCCCCC
Q 023583 182 RTVKVNFPEVPRG 194 (280)
Q Consensus 182 ~~l~v~~a~~~~~ 194 (280)
+.|.|.++.....
T Consensus 120 ~~l~V~~a~~~~~ 132 (143)
T 3egn_A 120 KPMVVQFARSARP 132 (143)
T ss_dssp EECEEEECCCSCC
T ss_pred cEEEEEECCCCCC
Confidence 9999999875443
No 156
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.2e-17 Score=120.45 Aligned_cols=82 Identities=18% Similarity=0.381 Sum_probs=74.2
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHH----HHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLA----EVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 183 (280)
...+.++|||+|||+++++++|+ ++|+.||.|..+.+.+ +|+++|||||+|.+.++|.+|++.|+|..++|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34577899999999999999999 9999999999998873 5778999999999999999999999999999999
Q ss_pred eEEecCCCC
Q 023583 184 VKVNFPEVP 192 (280)
Q Consensus 184 l~v~~a~~~ 192 (280)
|.|.++...
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999998754
No 157
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.9e-17 Score=119.41 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..++|||+|||+++++++|+++|+.||.|..+++. +++|||||+|.+.++|.+|+..|+|..++|+.|.|.+++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 357999999999999999999999999999999999876
Q ss_pred C
Q 023583 191 V 191 (280)
Q Consensus 191 ~ 191 (280)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=115.83 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=71.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHcc--CCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEA--GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~--G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
....+.++|||+|||+++++++|+++|+.| |.|..+.+. +|||||+|.+.++|.+|++.|+|..|.|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 334567899999999999999999999999 899988764 7899999999999999999999999999999
Q ss_pred EEecCCCCC
Q 023583 185 KVNFPEVPR 193 (280)
Q Consensus 185 ~v~~a~~~~ 193 (280)
.|.++....
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999987544
No 159
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=1.1e-16 Score=116.92 Aligned_cols=79 Identities=19% Similarity=0.440 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..+.++|||+|||+++++++|+++|+.||.|..+.++ +|||||+|.+.++|.+|++.|+|..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3467899999999999999999999999999999986 57999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 023583 189 PEVPRGG 195 (280)
Q Consensus 189 a~~~~~~ 195 (280)
+......
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 8765443
No 160
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=9.8e-18 Score=128.57 Aligned_cols=108 Identities=24% Similarity=0.341 Sum_probs=65.9
Q ss_pred eEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHH
Q 023583 155 GFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRD 234 (280)
Q Consensus 155 g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~ 234 (280)
-++|++|.+...+..|+..++|....|+.- +.+.. ........++|||+|||+.+++++|++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~-----------------~~~~~~~~~~l~V~nLp~~~te~~L~~ 66 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGR-----------------PPPDVEGMTSLKVDNLTYRTSPDTLRR 66 (135)
T ss_dssp -------------------------------CCSCC-----------------SCSSGGGCCCEEEECCCSSCHHHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCC-----------------CCCCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 467888888888999999888877666541 11100 111223467999999999999999999
Q ss_pred HhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 235 AFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 235 ~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 67 ~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~ 112 (135)
T 2lea_A 67 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 112 (135)
T ss_dssp HHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC
T ss_pred HHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 9999999999999999989999999999999999999999999984
No 161
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=119.28 Aligned_cols=78 Identities=24% Similarity=0.443 Sum_probs=71.2
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.++|||+|||+.+++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.|+|..|+|+.|.|.++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 456899999999999999999999999988766 237889999999999999999999999999999999999998
Q ss_pred CCC
Q 023583 190 EVP 192 (280)
Q Consensus 190 ~~~ 192 (280)
..+
T Consensus 89 ~~~ 91 (96)
T 1fjc_A 89 GEK 91 (96)
T ss_dssp SSS
T ss_pred CCC
Confidence 644
No 162
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.3e-17 Score=121.46 Aligned_cols=78 Identities=23% Similarity=0.443 Sum_probs=74.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..++|||+|||+++++++|+++|+.||.|..+.++++. +|+++|||||+|.+.++|.+|++ +|..++|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45799999999999999999999999999999999998 99999999999999999999998 9999999999998876
Q ss_pred C
Q 023583 191 V 191 (280)
Q Consensus 191 ~ 191 (280)
.
T Consensus 85 ~ 85 (102)
T 2xs2_A 85 R 85 (102)
T ss_dssp E
T ss_pred c
Confidence 4
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.4e-16 Score=125.53 Aligned_cols=83 Identities=29% Similarity=0.616 Sum_probs=78.8
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+.+++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|.+|++.|||..++|+.|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 34567799999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cCC
Q 023583 188 FPE 190 (280)
Q Consensus 188 ~a~ 190 (280)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 875
No 164
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.8e-17 Score=116.78 Aligned_cols=78 Identities=21% Similarity=0.419 Sum_probs=70.4
Q ss_pred cCCCCCeEEEeCCCC-CCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 108 ASDEAARLYVGNLPY-SMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~-~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
...+.++|||+|||+ .+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345788999999998 99999999999999999999984 799999999999999999999999999999999
Q ss_pred ecCCCCC
Q 023583 187 NFPEVPR 193 (280)
Q Consensus 187 ~~a~~~~ 193 (280)
.++....
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9987543
No 165
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=119.49 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=61.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCC-CceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g-~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
+++|||+|||+.+|+++|+++|++|| .|..|++++|+.+|.+||||||+|.+.++|.+|++.++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~ 66 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH 66 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCC
Confidence 36899999999999999999999999 899999999999999999999999999999999998743
No 166
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.69 E-value=9.7e-17 Score=125.22 Aligned_cols=81 Identities=26% Similarity=0.444 Sum_probs=74.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
......++|||+|||+++++++|+++|+.||.|..++++++ ++|||||+|.+.++|.+|++.|||..|+|+.|.|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999876 5899999999999999999999999999999999
Q ss_pred ecCCCC
Q 023583 187 NFPEVP 192 (280)
Q Consensus 187 ~~a~~~ 192 (280)
.++..+
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998743
No 167
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=114.02 Aligned_cols=79 Identities=28% Similarity=0.439 Sum_probs=70.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
....++|||+|||+++++++|+++|+.||.|..| +.+..+|+ ||||+|.+.++|.+|++ |+|..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 55665665 99999999999999999 999999999999998
Q ss_pred CCCCC
Q 023583 189 PEVPR 193 (280)
Q Consensus 189 a~~~~ 193 (280)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 76443
No 168
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=7e-17 Score=129.44 Aligned_cols=83 Identities=29% Similarity=0.528 Sum_probs=78.4
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
...+.++|||+|||+.+++++|+++|+.||.|..|.++.+. ++.++|||||+|.+.++|.+|++.|+|..|+|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred cCCC
Q 023583 188 FPEV 191 (280)
Q Consensus 188 ~a~~ 191 (280)
++..
T Consensus 163 ~a~~ 166 (177)
T 2f3j_A 163 LVAS 166 (177)
T ss_dssp EESS
T ss_pred EecC
Confidence 9863
No 169
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-17 Score=120.96 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..++|||+|||+++++++|+++|++||.|..|.++. ++|||||+|.+.++|.+|++.|||..+.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998864 57999999999999999999999999999999999986
Q ss_pred C
Q 023583 191 V 191 (280)
Q Consensus 191 ~ 191 (280)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 170
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=2.9e-17 Score=123.87 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=72.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCee--EEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVA--SAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~--~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....++|||+|||+++|+++|+++|+.| .|. .|+|++++. |+++|||||+|.+.++|.+|++. ++..|+||.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3456789999999999999999999999 576 899999986 99999999999999999999985 889999999999
Q ss_pred ecCC
Q 023583 187 NFPE 190 (280)
Q Consensus 187 ~~a~ 190 (280)
..+.
T Consensus 116 ~~a~ 119 (126)
T 2hgm_A 116 FKSS 119 (126)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 171
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.6e-17 Score=115.70 Aligned_cols=79 Identities=24% Similarity=0.464 Sum_probs=70.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCC-eeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhC-CCcCCceeEE
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGT-VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG-SQIGGRTVKV 186 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~i~g~~l~v 186 (280)
..+.++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6655552 479999999999999999999999 9999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++..+..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99875543
No 172
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=1.3e-17 Score=128.20 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=73.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
....++|||+|||+++|+++|+++|+.|| |..|+|++++. |+++|||||+|.+.++|.+|+ .+|+..|+||.|.|.+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34568999999999999999999999999 67999999985 999999999999999999999 6899999999999998
Q ss_pred CCCCC
Q 023583 189 PEVPR 193 (280)
Q Consensus 189 a~~~~ 193 (280)
+....
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 76543
No 173
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.3e-16 Score=117.84 Aligned_cols=75 Identities=25% Similarity=0.548 Sum_probs=70.1
Q ss_pred CCCeEEEeCCCCC-CCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 111 EAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 111 ~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
..++|||+|||++ +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|++.|+|..|+|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999 999999999999999999998 4899999999999999999999999999999999998
Q ss_pred CCCC
Q 023583 190 EVPR 193 (280)
Q Consensus 190 ~~~~ 193 (280)
..+.
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7443
No 174
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.69 E-value=2.7e-16 Score=129.54 Aligned_cols=84 Identities=21% Similarity=0.481 Sum_probs=79.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
...++|||+|||+++++++|+++|+.||.|..++++++..+|+++|||||+|.+.++|.+|++.|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 46689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred CCCC
Q 023583 190 EVPR 193 (280)
Q Consensus 190 ~~~~ 193 (280)
..+.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7553
No 175
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=112.63 Aligned_cols=66 Identities=29% Similarity=0.486 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKA 69 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcC
Confidence 568999999999999999999999999999999999998999999999999999999999999987
No 176
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.68 E-value=5.2e-17 Score=115.60 Aligned_cols=65 Identities=26% Similarity=0.454 Sum_probs=60.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCC--CceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g--~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+|||+|||+.+++++|+++|+.|| .|..++++.++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~ 68 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 68 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC
Confidence 4799999999999999999999999 9999999999999999999999999999999999999984
No 177
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=112.09 Aligned_cols=67 Identities=30% Similarity=0.521 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 71 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 4679999999999999999999999999999999999889999999999999999999999999984
No 178
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-16 Score=113.48 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE--------EEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--------~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|++||.|.. ++++.++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 446789999999999999999999999999999 999999989999999999999999999999999984
No 179
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=1.5e-16 Score=111.78 Aligned_cols=68 Identities=31% Similarity=0.471 Sum_probs=64.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999999999999999999999999999999999889999999999999999999999999984
No 180
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.67 E-value=4e-16 Score=114.14 Aligned_cols=67 Identities=24% Similarity=0.377 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|+.||.|..|.++.++ +|.++|||||+|.+.++|.+|++.|||.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 79 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGS 79 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCC
Confidence 457899999999999999999999999999999999998 7999999999999999999999999984
No 181
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=112.97 Aligned_cols=69 Identities=28% Similarity=0.443 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 80 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 445689999999999999999999999999999999999999999999999999999999999999983
No 182
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=1.8e-16 Score=114.13 Aligned_cols=67 Identities=27% Similarity=0.542 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.++|||+|||+.+++++|+++|++||.|..+++..++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 67 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 67 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3579999999999999999999999999999999999989999999999999999999999999984
No 183
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.67 E-value=2.5e-16 Score=125.07 Aligned_cols=80 Identities=24% Similarity=0.466 Sum_probs=76.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
...++|||+|||+.+++++|+++|++||.|..+.++++..+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999986
No 184
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.2e-16 Score=114.30 Aligned_cols=68 Identities=25% Similarity=0.379 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCce-EEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL-SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|. .+++++++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 3568999999999999999999999999999 9999999999999999999999999999999999984
No 185
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=5.5e-17 Score=117.82 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=63.8
Q ss_pred CCeEEEcCCCC------CCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGW------GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~------~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.++|||+|||+ .+++++|+++|++||.|..|++++++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 77 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK 77 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc
Confidence 57899999999 9999999999999999999999999999999999999999999999999999984
No 186
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=114.89 Aligned_cols=69 Identities=25% Similarity=0.438 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 80 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 345689999999999999999999999999999999999989999999999999999999999999984
No 187
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.5e-16 Score=111.81 Aligned_cols=80 Identities=26% Similarity=0.365 Sum_probs=71.4
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEE
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKV 186 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v 186 (280)
....+.++|||+|| ++++++|+++|++||.|..|.+. +++|||||+|.+.++|.+|++.|+|..|.|+.|.|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999984 46899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q 023583 187 NFPEVPRG 194 (280)
Q Consensus 187 ~~a~~~~~ 194 (280)
.++..+..
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99875443
No 188
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.9e-16 Score=114.50 Aligned_cols=69 Identities=25% Similarity=0.415 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 80 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCC
Confidence 345689999999999999999999999999999999999989999999999999999999999999984
No 189
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=1.2e-16 Score=113.26 Aligned_cols=75 Identities=20% Similarity=0.354 Sum_probs=69.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
...++|||+|||+++++++|+++|++| .|..+++. +++|||||+|.+.++|.+|++.|||..++|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456899999999999999999999999 99999884 57899999999999999999999999999999999997
Q ss_pred CC
Q 023583 190 EV 191 (280)
Q Consensus 190 ~~ 191 (280)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 190
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.67 E-value=2.6e-16 Score=110.02 Aligned_cols=65 Identities=38% Similarity=0.775 Sum_probs=62.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+|||+|||+.+++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~ 66 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQ 66 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCC
Confidence 58999999999999999999999999999999999989999999999999999999999999984
No 191
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-16 Score=112.21 Aligned_cols=67 Identities=31% Similarity=0.575 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.++|||+|||+.+++++|+++|++||.|..+.+..++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 5689999999999999999999999999999999999989999999999999999999999999984
No 192
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=8.2e-16 Score=120.36 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=70.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC--ceeEEec
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNF 188 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g--~~l~v~~ 188 (280)
...+|||+||++.+|+++|+++|++||.|.+|++..+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3456899999999999999999999999999998743 258999999999999999999999999965 9999999
Q ss_pred CCCCC
Q 023583 189 PEVPR 193 (280)
Q Consensus 189 a~~~~ 193 (280)
++...
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 88653
No 193
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.4e-16 Score=111.56 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 445689999999999999999999999999999999999989999999999999999999999999983
No 194
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.6e-16 Score=112.51 Aligned_cols=79 Identities=25% Similarity=0.331 Sum_probs=71.0
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEE-EeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAE-IVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~-~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
...++|||+|||+++++++|+++|+.||.|..++ ++.++.+ |.|||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4568999999999999999999999999999994 7776543 3499999999999999999999999999999999
Q ss_pred CCCC
Q 023583 189 PEVP 192 (280)
Q Consensus 189 a~~~ 192 (280)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8754
No 195
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-16 Score=117.82 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=69.5
Q ss_pred ccCCCCCeEEE--eCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCc-----
Q 023583 107 AASDEAARLYV--GNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI----- 179 (280)
Q Consensus 107 ~~~~~~~~l~V--~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i----- 179 (280)
....+.++||| |||++++++++|+++|++||.|..|.++. .+|||||+|.+.++|.+|++.|||..+
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 33456789999 77999999999999999999999998763 379999999999999999999999988
Q ss_pred CCceeEEecCC
Q 023583 180 GGRTVKVNFPE 190 (280)
Q Consensus 180 ~g~~l~v~~a~ 190 (280)
.|+.|.|.++.
T Consensus 94 ~g~~l~v~~a~ 104 (114)
T 2cq2_A 94 QKITLYLNFVE 104 (114)
T ss_dssp CEEECEEEEES
T ss_pred CCcEEEEEecc
Confidence 68899998876
No 196
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=4.8e-16 Score=115.66 Aligned_cols=69 Identities=28% Similarity=0.525 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|+.||.|..|.+++++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 345789999999999999999999999999999999999889999999999999999999999999984
No 197
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.2e-16 Score=112.34 Aligned_cols=67 Identities=27% Similarity=0.496 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++ |||.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~ 74 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH 74 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC
Confidence 456899999999999999999999999999999999999999999999999999999999998 8874
No 198
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=116.22 Aligned_cols=78 Identities=14% Similarity=0.251 Sum_probs=68.6
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCC---CCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeE
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVT---DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVK 185 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~ 185 (280)
....++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.+++ ++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 45678999999999999999999999999999 888888777 79999999999999999999998843 6777777
Q ss_pred EecC
Q 023583 186 VNFP 189 (280)
Q Consensus 186 v~~a 189 (280)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 7643
No 199
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=1.1e-15 Score=115.33 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=70.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeE-EEEEECCHHHHHHHHHHhhCCCcCC--ceeEEe
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF-GFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVN 187 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~i~g--~~l~v~ 187 (280)
.-..|||+||++.+|+++|+++|++||.|.+|+++.+. +|| |||+|.+.++|.+|++.|||..|.| +.|+|+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34568899999999999999999999999999988643 677 9999999999999999999999988 899999
Q ss_pred cCCCCC
Q 023583 188 FPEVPR 193 (280)
Q Consensus 188 ~a~~~~ 193 (280)
+++...
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 997553
No 200
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.66 E-value=2.4e-16 Score=115.51 Aligned_cols=69 Identities=22% Similarity=0.387 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|++||.|..|+++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ 78 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 345689999999999999999999999999999999999999999999999999999999999999983
No 201
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=6.7e-16 Score=114.89 Aligned_cols=68 Identities=28% Similarity=0.439 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 90 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF 90 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999984
No 202
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.7e-16 Score=113.71 Aligned_cols=70 Identities=37% Similarity=0.602 Sum_probs=65.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 211 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...+.++|||+|||+.+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK 77 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 3446789999999999999999999999999999999999989999999999999999999999999984
No 203
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=6.5e-16 Score=113.73 Aligned_cols=69 Identities=33% Similarity=0.653 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|++||.|..+.+++++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 91 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 91 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 445689999999999999999999999999999999999999999999999999999999999999984
No 204
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=113.02 Aligned_cols=68 Identities=22% Similarity=0.392 Sum_probs=64.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 73 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999999999999999999999999999999999989999999999999999999999999983
No 205
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=9.9e-16 Score=121.07 Aligned_cols=81 Identities=33% Similarity=0.561 Sum_probs=76.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC--ceeEE
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG--RTVKV 186 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g--~~l~v 186 (280)
..+.++|||+|||..+++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|++.|+|..+.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 3467899999999999999999999999999999999999899999999999999999999999999999988 99999
Q ss_pred ecC
Q 023583 187 NFP 189 (280)
Q Consensus 187 ~~a 189 (280)
.++
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 206
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=114.28 Aligned_cols=69 Identities=30% Similarity=0.464 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 77 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 446789999999999999999999999999999999999989999999999999999999999999983
No 207
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.65 E-value=6.8e-16 Score=125.39 Aligned_cols=84 Identities=25% Similarity=0.479 Sum_probs=79.8
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
....++|||+|||+.+++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|.+|++.|+|..++|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45778999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCC
Q 023583 189 PEVP 192 (280)
Q Consensus 189 a~~~ 192 (280)
+...
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8744
No 208
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=114.46 Aligned_cols=69 Identities=30% Similarity=0.393 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGA 78 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCC
Confidence 345689999999999999999999999999999999999989999999999999999999999999984
No 209
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=3.3e-16 Score=116.70 Aligned_cols=64 Identities=36% Similarity=0.643 Sum_probs=60.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+|||+|||+.+++++|+++|++||.|..|+++++. +.+||||||+|.+.++|.+|++.|||.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999999999985 558999999999999999999999984
No 210
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.65 E-value=6.9e-16 Score=115.33 Aligned_cols=69 Identities=30% Similarity=0.458 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 345689999999999999999999999999999999999989999999999999999999999999984
No 211
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=3.2e-16 Score=110.58 Aligned_cols=72 Identities=35% Similarity=0.695 Sum_probs=66.9
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHcc----C-------CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEA----G-------TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 178 (280)
.+.++|||+|||+++++++|+++|+.| | .|..+++.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 456899999999999999999999999 8 8999988754 799999999999999999 899999
Q ss_pred cCCceeEEec
Q 023583 179 IGGRTVKVNF 188 (280)
Q Consensus 179 i~g~~l~v~~ 188 (280)
++|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 212
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=113.90 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=64.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
..+.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 3456899999999999999999999999999999999999999999999999999999999999998
No 213
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.2e-16 Score=113.12 Aligned_cols=69 Identities=28% Similarity=0.456 Sum_probs=64.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeee-CCCCCCccEEEEEeCCHHHHHHHHHHh-cCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFE-RYTGRSRGFGFVTFETAEDLQSALDAM-NGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~-~~~g~~kg~afV~f~~~e~A~~Al~~l-nG~ 280 (280)
....++|||+|||+.+++++|+++|+.||.|..|.++.+ +.+|.++|||||+|.+.++|.+|++.| ||.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 82 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST 82 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC
Confidence 345689999999999999999999999999999999999 789999999999999999999999999 774
No 214
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=4.6e-16 Score=115.89 Aligned_cols=75 Identities=27% Similarity=0.379 Sum_probs=66.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce-----e
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT-----V 184 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~-----l 184 (280)
....+|||+|||+++++++|+++|+.||.|..+.++.+ |||||+|.+.++|.+|++.|||..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35689999999999999999999999999999999755 99999999999999999999999999998 6
Q ss_pred EEecCCC
Q 023583 185 KVNFPEV 191 (280)
Q Consensus 185 ~v~~a~~ 191 (280)
.|..+..
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 6665543
No 215
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=8.1e-18 Score=153.01 Aligned_cols=68 Identities=21% Similarity=0.515 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999984
No 216
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5e-16 Score=113.83 Aligned_cols=68 Identities=21% Similarity=0.372 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|+.||.|..|.+..++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 88 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 88 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999984
No 217
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.6e-16 Score=107.79 Aligned_cols=75 Identities=24% Similarity=0.308 Sum_probs=66.4
Q ss_pred CCCCe-EEEeCCCCCCCHHH----HHHHHHcc-CCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce
Q 023583 110 DEAAR-LYVGNLPYSMTSSS----LAEVFAEA-GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (280)
Q Consensus 110 ~~~~~-l~V~nLp~~~te~~----l~~~F~~~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 183 (280)
.+..| |||+|||+++++++ |+++|++| |.|..| ++ |+|||.|.+.++|.+|++.|+|..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 45666 99999999999988 55899999 599988 34 99999999999999999999999999999
Q ss_pred eEEecCCCCCC
Q 023583 184 VKVNFPEVPRG 194 (280)
Q Consensus 184 l~v~~a~~~~~ 194 (280)
|+|.+++....
T Consensus 76 i~v~~A~~~sd 86 (96)
T 2diu_A 76 IIVSFTPKNRE 86 (96)
T ss_dssp CEEESSCCSCC
T ss_pred EEEEecCCCcc
Confidence 99999985543
No 218
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.65 E-value=6e-16 Score=117.59 Aligned_cols=69 Identities=28% Similarity=0.443 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~ 111 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 111 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 446789999999999999999999999999999999999999999999999999999999999999984
No 219
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=3.1e-16 Score=123.95 Aligned_cols=80 Identities=25% Similarity=0.478 Sum_probs=76.0
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..++|||+|||+++++++|+++|+.||.|..+.++++..+|.++|||||+|.+.++|.+|++ ++|..++|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35689999999999999999999999999999999998899999999999999999999998 89999999999999986
Q ss_pred C
Q 023583 191 V 191 (280)
Q Consensus 191 ~ 191 (280)
.
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 220
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=113.75 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=61.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+|+++|+++|++||.|..|++++++. |.++|||||+|.+.++|.+|+. +||.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~ 74 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQ 74 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCC
Confidence 357999999999999999999999999999999999986 9999999999999999999998 8773
No 221
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=110.71 Aligned_cols=67 Identities=19% Similarity=0.462 Sum_probs=63.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|+.||.|..+.++.++ +|+++|||||+|.+.++|.+|++.|||.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 456899999999999999999999999999999999998 8999999999999999999999999973
No 222
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=112.47 Aligned_cols=67 Identities=30% Similarity=0.526 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEE-EEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSA-KVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~-~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.++|||+|||+.+++++|+++|+.||.|..+ .++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQ 71 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999 99999889999999999999999999999999984
No 223
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=112.19 Aligned_cols=67 Identities=27% Similarity=0.484 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhcc-CCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQG-QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|+. ||.|..|.++.++ +|.++|||||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 74 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGA 74 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCC
Confidence 45689999999999999999999999 9999999999998 9999999999999999999999999983
No 224
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=5e-16 Score=110.27 Aligned_cols=77 Identities=26% Similarity=0.396 Sum_probs=62.6
Q ss_pred ccCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC--cCCcee
Q 023583 107 AASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ--IGGRTV 184 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~--i~g~~l 184 (280)
....+..+|||+|||+++|+++|+++|++||.|.+++++++ ++|||||+|.+.++|.+ ++|.. +.|+.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 34457789999999999999999999999999999999875 69999999999999883 45655 459999
Q ss_pred EEecCCCC
Q 023583 185 KVNFPEVP 192 (280)
Q Consensus 185 ~v~~a~~~ 192 (280)
.|.++..+
T Consensus 77 ~v~~a~~k 84 (89)
T 3d2w_A 77 HISNAEPK 84 (89)
T ss_dssp EEEECC--
T ss_pred EEEEcCCC
Confidence 99987643
No 225
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=1.5e-15 Score=111.04 Aligned_cols=83 Identities=22% Similarity=0.176 Sum_probs=73.7
Q ss_pred cCCCCCeEEEeCCCC-----CCCHHHHHHHHHccCCeeEEEEeecCCC-CCceeEEEEEECCHHHHHHHHHHhhCCCcCC
Q 023583 108 ASDEAARLYVGNLPY-----SMTSSSLAEVFAEAGTVASAEIVYDRVT-DRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~-----~~te~~l~~~F~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g 181 (280)
...+.++|+|.|+.. +-++++|+++|++||.|.++.+++++.+ ++++|||||+|.+.++|.+|++.|||..++|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 345788999999963 2478999999999999999999998654 6899999999999999999999999999999
Q ss_pred ceeEEecCC
Q 023583 182 RTVKVNFPE 190 (280)
Q Consensus 182 ~~l~v~~a~ 190 (280)
|.|.|.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 999999875
No 226
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-16 Score=112.45 Aligned_cols=68 Identities=19% Similarity=0.271 Sum_probs=64.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999999999999999999999999999999999989999999999999999999999999984
No 227
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=8.4e-16 Score=124.66 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=75.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
...++|||+|||+++++++|+++|+.||.|..+.++++..+|+++|||||+|.+.++|.+|+.. +|..|+|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3558999999999999999999999999999999999998999999999999999999999986 899999999999998
Q ss_pred CCCCC
Q 023583 190 EVPRG 194 (280)
Q Consensus 190 ~~~~~ 194 (280)
..+..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 75543
No 228
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.2e-15 Score=111.31 Aligned_cols=66 Identities=41% Similarity=0.636 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|+.||.|..|.++.+ +|.++|||||+|.+.++|.+|++.|||.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGR 78 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999999999999999999999999999999988 8999999999999999999999999984
No 229
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=1.6e-15 Score=119.51 Aligned_cols=80 Identities=38% Similarity=0.630 Sum_probs=74.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce--eEEe
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT--VKVN 187 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~--l~v~ 187 (280)
...++|||+|||+.+++++|+++|+.||.|..++++++..+|.++|||||+|.+.++|.+|++.|||..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 35678999999999999999999999999999999999989999999999999999999999999999999975 7777
Q ss_pred cC
Q 023583 188 FP 189 (280)
Q Consensus 188 ~a 189 (280)
+|
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 230
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=8.8e-16 Score=126.73 Aligned_cols=79 Identities=28% Similarity=0.492 Sum_probs=74.3
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
...+|||+|||+.+++++|+++|+.||.|..++++++. +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 5589999999999999999999999999999999999986
Q ss_pred C
Q 023583 191 V 191 (280)
Q Consensus 191 ~ 191 (280)
.
T Consensus 180 ~ 180 (213)
T 4f02_A 180 S 180 (213)
T ss_dssp C
T ss_pred C
Confidence 4
No 231
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=112.16 Aligned_cols=67 Identities=25% Similarity=0.429 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCC---CCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERY---TGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~---~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.++|||+|||+.+++++|+++|+.||.|..|.+..++. ++.++|||||+|.+.++|.+|++.|||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 568999999999999999999999999999999999886 6689999999999999999999999984
No 232
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.64 E-value=5e-16 Score=121.86 Aligned_cols=67 Identities=21% Similarity=0.406 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g--~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|+.|| .|..|+++.|+.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~ 122 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK 122 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 457999999999999999999999999 9999999999999999999999999999999999999984
No 233
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.3e-16 Score=113.73 Aligned_cols=69 Identities=20% Similarity=0.311 Sum_probs=64.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCce--------EEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL--------SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~--------~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|++||.|. .|+++.++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34568999999999999999999999999999 6999999889999999999999999999999999984
No 234
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=4.8e-16 Score=118.50 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=63.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceE--EEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|++||.|.. |++++|+.+|++||||||+|.+. +|.+|+..|||.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 345689999999999999999999999999976 99999999999999999999999 999999999984
No 235
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.2e-15 Score=111.33 Aligned_cols=67 Identities=24% Similarity=0.541 Sum_probs=62.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|+.|| |..|.+++++.+|+++|||||+|.+.++|.+|+ .|||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 78 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA 78 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC
Confidence 34568999999999999999999999996 999999999999999999999999999999999 89984
No 236
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=1.6e-15 Score=120.58 Aligned_cols=79 Identities=24% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC---CceeEEe
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG---GRTVKVN 187 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~---g~~l~v~ 187 (280)
..++|||+|||+++|+++|+++|+.||.|..+.++++. +|+++|||||+|.+.++|.+|++.|||..+. |++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 56789999999999999999999999999999999997 6999999999999999999999999998776 4999999
Q ss_pred cCC
Q 023583 188 FPE 190 (280)
Q Consensus 188 ~a~ 190 (280)
++.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 237
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.63 E-value=3.2e-16 Score=112.47 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 4589999999999999999999999999999999999999999999999999999999999999984
No 238
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=7.9e-16 Score=113.57 Aligned_cols=68 Identities=19% Similarity=0.340 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 91 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 91 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999984
No 239
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.63 E-value=8.7e-16 Score=108.39 Aligned_cols=64 Identities=31% Similarity=0.685 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ 276 (280)
.+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.++|.+|++.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 3568999999999999999999999999999999999999999999999999999999999975
No 240
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.63 E-value=9.1e-16 Score=114.43 Aligned_cols=67 Identities=34% Similarity=0.580 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|..|.+..+. +|.++|||||+|.+.++|.+|++.|||.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 71 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGK 71 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 346899999999999999999999999999999999998 9999999999999999999999999984
No 241
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.63 E-value=1.2e-15 Score=111.99 Aligned_cols=68 Identities=32% Similarity=0.513 Sum_probs=64.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|||.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 93 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGV 93 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3457899999999999999999999999999999999998 9999999999999999999999999984
No 242
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.63 E-value=4.2e-16 Score=108.56 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=58.8
Q ss_pred CeEEEcCCCCCC------CHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGL------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~------t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++|||+|||+.+ ++++|+++|++||.|..+.+. +.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 689999999999 789999999999999999987 458999999999999999999999999984
No 243
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-15 Score=111.08 Aligned_cols=67 Identities=25% Similarity=0.541 Sum_probs=63.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++.|||.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 89 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGK 89 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 456899999999999999999999999999999999998 9999999999999999999999999984
No 244
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.4e-15 Score=111.15 Aligned_cols=66 Identities=29% Similarity=0.566 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCC-CCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~-g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|+.|| |..|.++.++.+ |.++|||||+|.+.++|.+|+ .|||.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 79 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 79 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC
Confidence 4568999999999999999999999999 999999999887 999999999999999999999 89984
No 245
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=4.7e-16 Score=106.59 Aligned_cols=63 Identities=30% Similarity=0.532 Sum_probs=60.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 217 ~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ |||.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~ 63 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFH 63 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCC
Confidence 58999999999999999999999999999999999899999999999999999999997 8873
No 246
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.1e-16 Score=111.84 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=57.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..+.++|||+|||+.+++++|+++|++||.|.+|+++++ ||||||+|.+.++|..|++.|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcc
Confidence 446789999999999999999999999999999999854 79999999999999999998864
No 247
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.62 E-value=9.8e-16 Score=109.93 Aligned_cols=67 Identities=25% Similarity=0.498 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|..|.+..++. |.++|||||+|.+.++|.+|++.|||.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 4568999999999999999999999999999999999985 999999999999999999999999984
No 248
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=7.6e-16 Score=108.80 Aligned_cols=67 Identities=25% Similarity=0.457 Sum_probs=62.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCC-CccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGR-SRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~-~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+++|||+|||+.+++++|+++|++||.|..+.++.+..++. ++|||||+|.+.++|.+|++.|||.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGG 70 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCC
Confidence 357999999999999999999999999999999999987766 8999999999999999999999984
No 249
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=8.8e-16 Score=112.05 Aligned_cols=67 Identities=28% Similarity=0.621 Sum_probs=63.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.++|||+|||+.+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 73 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3478999999999999999999999999999999999989999999999999999999999999983
No 250
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.7e-15 Score=112.84 Aligned_cols=68 Identities=35% Similarity=0.504 Sum_probs=64.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
....++|||+|||+.+++++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.|||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 34568999999999999999999999999999999999999999999999999999999999999886
No 251
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.62 E-value=1.1e-15 Score=108.26 Aligned_cols=65 Identities=25% Similarity=0.659 Sum_probs=62.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.++|||+|||+.+++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|+ .|||.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~ 70 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDES 70 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCC
Confidence 478999999999999999999999999999999999989999999999999999999999 89984
No 252
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=3.8e-15 Score=111.80 Aligned_cols=74 Identities=27% Similarity=0.335 Sum_probs=66.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeE-EEEEECCHHHHHHHHHHhhCCCcCC--ceeEEecCC
Q 023583 114 RLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGF-GFVTMGSVEEAKEAIRLFDGSQIGG--RTVKVNFPE 190 (280)
Q Consensus 114 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~i~g--~~l~v~~a~ 190 (280)
.|||+||++.+++++|+.+|++||.|.+|+++.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4689999999999999999999999999999642 286 9999999999999999999999987 689999987
Q ss_pred CCC
Q 023583 191 VPR 193 (280)
Q Consensus 191 ~~~ 193 (280)
...
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 553
No 253
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=110.84 Aligned_cols=67 Identities=25% Similarity=0.469 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|.+|++.|||.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 456899999999999999999999999999999999998 6999999999999999999999999984
No 254
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=2.2e-15 Score=122.38 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
..++|||+|||+++++++|+.+|+.||.|..|+++++. +|+++|||||+|.+.++|.+|++. .+..++|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~-~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVET-PGQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHC-TTCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEhH
Confidence 35799999999999999999999999999999999987 599999999999999999999985 4569999999999876
Q ss_pred C
Q 023583 191 V 191 (280)
Q Consensus 191 ~ 191 (280)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 3
No 255
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=3.4e-15 Score=106.44 Aligned_cols=66 Identities=33% Similarity=0.528 Sum_probs=61.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|++||.|..+.+.++ +|.++|||||+|.+.++|.+|++.|||.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~ 71 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGM 71 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 35689999999999999999999999999999999874 7899999999999999999999999984
No 256
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=5.5e-15 Score=107.64 Aligned_cols=67 Identities=30% Similarity=0.595 Sum_probs=61.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|+.||.|..|.++.++. .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGT 78 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 44568999999999999999999999999999999998863 48999999999999999999999984
No 257
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3e-15 Score=109.04 Aligned_cols=65 Identities=29% Similarity=0.446 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ 276 (280)
..+.++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 34568999999999999999999999999999999999998999999999999999999999985
No 258
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.3e-16 Score=109.40 Aligned_cols=78 Identities=26% Similarity=0.335 Sum_probs=66.1
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
.+.++|||+|||+++++++|+++|+.||.|..++++.+ ++|||||+|.+.++|++|.. .+..+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 45789999999999999999999999999999999865 68999999999999976533 234558999999988
Q ss_pred CCCCC
Q 023583 190 EVPRG 194 (280)
Q Consensus 190 ~~~~~ 194 (280)
..+..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75443
No 259
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.61 E-value=1.9e-15 Score=114.31 Aligned_cols=68 Identities=21% Similarity=0.372 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 87 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 87 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 34679999999999999999999999999999999999999999999999999999999999999984
No 260
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.1e-15 Score=110.85 Aligned_cols=62 Identities=15% Similarity=0.102 Sum_probs=57.1
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 212 VDSPHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 212 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..+.++|||+|||+ .+++++|+++|++||.|.+|.++++ +|||||+|.+.++|..|++.|||
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcC
Confidence 44678999999999 9999999999999999999999854 58999999999999999999875
No 261
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=3.1e-15 Score=112.34 Aligned_cols=77 Identities=26% Similarity=0.386 Sum_probs=70.0
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEec
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNF 188 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~ 188 (280)
..+.++|||+|+ ++++++|+++|+.||.|..|.+. +++|||||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 346789999995 79999999999999999999985 4689999999999999999999999999999999999
Q ss_pred CCCCC
Q 023583 189 PEVPR 193 (280)
Q Consensus 189 a~~~~ 193 (280)
+....
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87543
No 262
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=109.56 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=60.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceE-EEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS-AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~-~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
...++|||+|||+.+++++|+++|+.||.|.. +.++.+ .+|+++|||||+|.+.++|.+|++. ||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~ 78 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HK 78 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Cc
Confidence 45689999999999999999999999999988 888888 6899999999999999999999986 76
No 263
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=7.1e-16 Score=106.18 Aligned_cols=63 Identities=35% Similarity=0.589 Sum_probs=60.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
++|||+|||+.+++++|+++|++||.|..+.+..++.+|+++|||||+|.+.++|.+|++.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 479999999999999999999999999999999999899999999999999999999999765
No 264
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.7e-15 Score=109.75 Aligned_cols=67 Identities=28% Similarity=0.557 Sum_probs=63.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
....++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++. ||
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~ 79 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RP 79 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CC
Confidence 34568999999999999999999999999999999999999999999999999999999999997 76
No 265
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=110.91 Aligned_cols=67 Identities=28% Similarity=0.549 Sum_probs=60.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeC-CCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFER-YTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~-~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|+.|| |..|+++.++ .+|+++|||||+|.+.++|.+|+ .|||.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 34568999999999999999999999999 9999999998 68999999999999999999999 89984
No 266
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=112.86 Aligned_cols=66 Identities=20% Similarity=0.410 Sum_probs=62.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+ .|||.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 3479999999999999999999999999999999999989999999999999999999999 89973
No 267
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=109.36 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=59.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|+.|| ++.|.+++++ +|+++|||||+|.+.++|.+||+ +||.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~ 77 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKA 77 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCC
Confidence 3568999999999999999999999999 4599999998 89999999999999999999995 7763
No 268
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=4.2e-15 Score=114.28 Aligned_cols=69 Identities=30% Similarity=0.456 Sum_probs=65.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 211 FVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 211 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
...+.++|||+|||+.+++++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++.|||
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 127 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 127 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 344678999999999999999999999999999999999998999999999999999999999999987
No 269
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.60 E-value=1.9e-15 Score=111.45 Aligned_cols=65 Identities=35% Similarity=0.576 Sum_probs=60.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
...++|||+|||+.+++++|+++|+.||.|..|++++++.+|.++|||||+|.+.++|.+|++.+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~ 87 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC
Confidence 45689999999999999999999999999999999999989999999999999999999999865
No 270
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=115.65 Aligned_cols=69 Identities=28% Similarity=0.465 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|+.||.|..|.++.++.+|+++|||||+|.+.++|.+|++.|||.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 107 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGF 107 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 345689999999999999999999999999999999999999999999999999999999999999983
No 271
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.5e-15 Score=108.25 Aligned_cols=61 Identities=8% Similarity=-0.010 Sum_probs=56.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
..+.++|||+|||+.+++++|+++|++||.|..+.++++ ||||||+|.+.++|.+|++.||
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhc
Confidence 446789999999999999999999999999999988753 8999999999999999999875
No 272
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.60 E-value=9.4e-15 Score=110.15 Aligned_cols=68 Identities=31% Similarity=0.493 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|+.||.|..|.+..++ +|.++|||||+|.+.++|.+|++.|||.
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 3456899999999999999999999999999999999998 9999999999999999999999999983
No 273
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.5e-15 Score=107.66 Aligned_cols=67 Identities=31% Similarity=0.396 Sum_probs=61.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|+.||.|..|.++.++. .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~ 78 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGR 78 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34568999999999999999999999999999999998853 46899999999999999999999983
No 274
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-15 Score=114.37 Aligned_cols=68 Identities=21% Similarity=0.254 Sum_probs=62.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||+ |||.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~ 89 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ 89 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC
Confidence 3456899999999999999999999999999997777787899999999999999999999999 9873
No 275
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.59 E-value=2.6e-15 Score=104.55 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=56.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.-|+|+||++.+|+++|+++|.+||.|..+.+.. +||||||+|.+.++|.+|++.|||.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~ 66 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNC 66 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTE
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCC
Confidence 356899999999999999999999999999999864 6999999999999999999999984
No 276
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.5e-15 Score=111.64 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=61.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCc-eEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGL-LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v-~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
....++|||+|||+.+++++|+++|+.||.| ..|+++.++ +|+++|||||+|.+.++|.+||+. ||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~ 78 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HR 78 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CS
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CC
Confidence 3456899999999999999999999999999 899999998 999999999999999999999986 76
No 277
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.59 E-value=6.7e-16 Score=109.69 Aligned_cols=64 Identities=28% Similarity=0.609 Sum_probs=61.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++|||+|||+.+++++|+++|++||.|..+.+.+++.+|.++|||||+|.+.+ |.+|+..|||.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~ 65 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT 65 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999984
No 278
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=5.5e-15 Score=107.83 Aligned_cols=62 Identities=11% Similarity=0.098 Sum_probs=56.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..+.++|||+|||+.+++++|+++|++||.|..+.++++ ||||||+|.+.++|.+|++.|||
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhcc
Confidence 345689999999999999999999999999999998743 79999999999999999998864
No 279
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.7e-15 Score=104.71 Aligned_cols=65 Identities=17% Similarity=0.319 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|+.| .|..+.++++ .+|+++|||||+|.+.++|.+|++ |||.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~ 72 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNRE 72 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCc
Confidence 356899999999999999999999999 9999999999 689999999999999999999999 9983
No 280
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-15 Score=110.65 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=57.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..+.++|||+|||+.+++++|+++|++||.|.+|+++++ ||||||+|.+.++|.+|++.|||
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhcc
Confidence 345689999999999999999999999999999999865 79999999999999999998864
No 281
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.58 E-value=5.9e-15 Score=115.80 Aligned_cols=68 Identities=21% Similarity=0.399 Sum_probs=65.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 104 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT 104 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999984
No 282
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=111.42 Aligned_cols=63 Identities=17% Similarity=0.348 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCC---CCCccEEEEEeCCHHHHHHHHHHh
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYT---GRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~---g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
..++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 468999999999999999999999999999 888888777 799999999999999999999998
No 283
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.58 E-value=2.3e-15 Score=115.12 Aligned_cols=65 Identities=18% Similarity=0.339 Sum_probs=61.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC---ceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG---LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~---v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
...++|||+|||+.+|+++|+++|+.||. |..|++++++. |+++|||||+|.+.++|.+|++ |||
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g 109 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDR 109 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 45689999999999999999999999999 89999999986 9999999999999999999999 886
No 284
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=3.7e-15 Score=107.28 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=57.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..++++|||+|||+.+++++|+++|++||.|.++.+++ .||+|||+|.+.++|.+|++.|||
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcC
Confidence 34678999999999999999999999999999999874 479999999999999999999886
No 285
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.2e-15 Score=109.38 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=61.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHhccCCCceEEEEeeeCCCC---CCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLR---DAFQGQPGLLSAKVIFERYTG---RSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~---~~F~~~g~v~~~~i~~~~~~g---~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+ ++|++||.|..|.+..+..++ +++|||||+|.+.++|.+|++.|||.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 356899999999999999999 999999999999999887654 55699999999999999999999983
No 286
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=109.81 Aligned_cols=62 Identities=23% Similarity=0.367 Sum_probs=58.5
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
.++|||+|||+.+++++|+++|+.| .|..|.+++++. |+++|||||+|.+.++|.+|| .+||
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~ 77 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNR 77 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCC
Confidence 4689999999999999999999999 899999999985 999999999999999999999 5887
No 287
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.1e-15 Score=106.99 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=60.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLR----DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+ ++|++||.|..|+++.++.+ +|||||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCC
Confidence 356799999999999999999 99999999999999988754 899999999999999999999983
No 288
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=4e-15 Score=112.12 Aligned_cols=65 Identities=22% Similarity=0.596 Sum_probs=62.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+ .|||.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 100 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET 100 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC
Confidence 479999999999999999999999999999999999989999999999999999999999 79984
No 289
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.58 E-value=3.7e-15 Score=111.46 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC---ceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG---LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~---v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
...++|||+|||+.+++++|+++|+.||. |..|++++++. |+++|||||+|.+.++|.+||+ |||
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g 82 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDR 82 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 35689999999999999999999999999 89999999986 9999999999999999999999 887
No 290
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.57 E-value=3.2e-15 Score=109.41 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCCCC------CHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGL------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~------t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+ ++++|+++|++||.|..|.+. +.+|+++|||||+|.+.++|.+|+..|||.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 45799999999999 789999999999999999988 358999999999999999999999999983
No 291
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-15 Score=110.13 Aligned_cols=66 Identities=24% Similarity=0.371 Sum_probs=61.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC---ceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG---LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~---v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|+.||. |..|.++.++. |+++|||||+|.+.++|.+||+ +||.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~ 77 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRM 77 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcc
Confidence 35689999999999999999999999888 89999999986 9999999999999999999999 8873
No 292
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.9e-15 Score=108.39 Aligned_cols=67 Identities=30% Similarity=0.592 Sum_probs=61.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||..+++++|+++|++||.|..+.+..++ +.++|||||+|.+.++|.+|++.|||.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~ 92 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGT 92 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCC
Confidence 3456899999999999999999999999999999999885 458999999999999999999999984
No 293
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=2.6e-14 Score=105.17 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=59.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 34568999999999999999999999999999999864 4568999999999999999999999984
No 294
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.1e-15 Score=109.46 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=61.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCC-ceEEEEe-eeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVI-FERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~-v~~~~i~-~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
+.++|||+|||+.+++++|+++|..||. |..+.++ .+..+|.++|||||+|.+.++|.+|++.||
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 4679999999999999999999999998 9999998 788889999999999999999999999995
No 295
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.2e-15 Score=109.45 Aligned_cols=65 Identities=31% Similarity=0.534 Sum_probs=61.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..++|||+|||+.+++++|+++|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|++. ||
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~ 90 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP 90 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC
Confidence 347999999999999999999999999999999999998999999999999999999999986 65
No 296
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.56 E-value=4.5e-15 Score=123.76 Aligned_cols=67 Identities=25% Similarity=0.436 Sum_probs=63.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC--CceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQP--GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g--~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+||++.+++++|+++|++|| .|..|+|++|+.+|++||||||+|.+.++|.+||+.|||.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~ 135 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 135 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 357899999999999999999999999 9999999999999999999999999999999999999984
No 297
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=7.4e-15 Score=117.02 Aligned_cols=77 Identities=25% Similarity=0.451 Sum_probs=70.8
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecC
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFP 189 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a 189 (280)
...++|||+|||+++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..++|+.|.|.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 356799999999999999999999999988765 457899999999999999999999999999999999999998
Q ss_pred CC
Q 023583 190 EV 191 (280)
Q Consensus 190 ~~ 191 (280)
..
T Consensus 172 ~~ 173 (175)
T 1fje_B 172 GE 173 (175)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 298
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=2.1e-15 Score=103.23 Aligned_cols=62 Identities=26% Similarity=0.470 Sum_probs=58.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 217 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 217 ~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++. +|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~ 62 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KY 62 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SS
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CC
Confidence 589999999999999999999999999999999998999999999999999999999984 54
No 299
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=110.19 Aligned_cols=65 Identities=18% Similarity=0.311 Sum_probs=58.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLR----DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+ ++|++||.|.+|.+.. +|+++|||||+|.+.++|..|++.|||.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 456899999999999999876 6999999999988753 6889999999999999999999999984
No 300
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.9e-14 Score=105.97 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=56.6
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 212 VDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..+.++|||+|||+. +++++|+++|++||.|.+|++++ +||||||+|.+.++|..|++.|||
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhcc
Confidence 456789999999998 99999999999999999999863 489999999999999999998864
No 301
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=104.62 Aligned_cols=65 Identities=26% Similarity=0.470 Sum_probs=58.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|++||.| +++.+ .+|+++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 76 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKR 76 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 4467899999999999999999999999976 55666 58999999999999999999999999973
No 302
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=6.4e-15 Score=110.72 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=58.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCc----eEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGL----LSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v----~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..++|||+|||+.+++++|+++|+.||.| ..|.++.+. +|+++|||||+|.+.++|.+||+. ||
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~ 89 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HK 89 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CC
Confidence 45799999999999999999999999875 689999885 899999999999999999999985 65
No 303
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.54 E-value=1.1e-14 Score=121.22 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=71.1
Q ss_pred CCCCCeEEEeCCCCCC---------CHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCc
Q 023583 109 SDEAARLYVGNLPYSM---------TSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~---------te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i 179 (280)
....++||||||+..+ ++++|+.+|++||+|..|+++.+ +|||||+|.+.++|+.|++.|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4467899999999998 79999999999999999999853 79999999999999999999999999
Q ss_pred ------------CCceeEEecCCCC
Q 023583 180 ------------GGRTVKVNFPEVP 192 (280)
Q Consensus 180 ------------~g~~l~v~~a~~~ 192 (280)
.|+.|.|.++...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999754
No 304
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.54 E-value=5.8e-15 Score=109.75 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=57.8
Q ss_pred CeEEEcCC----CCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCC----HHH----HHHHHH--HhcC
Q 023583 216 HKIYAGNL----GWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET----AED----LQSALD--AMNG 279 (280)
Q Consensus 216 ~~l~V~nL----p~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~----~e~----A~~Al~--~lnG 279 (280)
.+|||+|| |+.+++++|+++|+.||.|..|.++.|+.||+++|||||+|.+ .++ |.+|+. .|||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 68999999 9999999999999999999999999999999999999999996 433 788888 6776
No 305
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.54 E-value=8.4e-15 Score=108.04 Aligned_cols=63 Identities=25% Similarity=0.246 Sum_probs=57.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCC-CceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQP-GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|.+|++.|||.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~ 90 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNI 90 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 457999999999999999999999999 899998853 357999999999999999999999983
No 306
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=3.4e-14 Score=103.19 Aligned_cols=66 Identities=32% Similarity=0.619 Sum_probs=60.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|+.| ..+.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 77 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 3467899999999999999999999977 47888889889999999999999999999999999984
No 307
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=3.1e-14 Score=104.61 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=56.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|..|.++.+ |||||+|.+.++|.+||+.|||.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~ 73 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT 73 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcC
Confidence 34689999999999999999999999999999999865 89999999999999999999983
No 308
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=3.4e-14 Score=102.70 Aligned_cols=63 Identities=21% Similarity=0.346 Sum_probs=57.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~ 74 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNM 74 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCC
Confidence 345689999999999999999999999999999998743 799999999999999999999984
No 309
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.53 E-value=4.6e-15 Score=107.87 Aligned_cols=65 Identities=28% Similarity=0.592 Sum_probs=61.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHH---HhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD---AMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~---~lnG 279 (280)
..++|||+|||+.+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|++ .|+|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~~~~~~~g 75 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVESQINFHG 75 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTTCCCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHhCCCeECC
Confidence 35799999999999999999999999999999999998 99999999999999999999998 5655
No 310
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=6.1e-15 Score=113.15 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=59.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++|| |+.|.|++|+. |+++|||||+|.+.++|.+|| .+||.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~ 108 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRA 108 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCC
Confidence 3467999999999999999999999999 77999999985 999999999999999999999 67763
No 311
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.52 E-value=4.3e-14 Score=105.00 Aligned_cols=65 Identities=23% Similarity=0.384 Sum_probs=59.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|+.||.|..|.++.+ +.++|||||+|.+.++|.+|++.|||.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~ 70 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGF 70 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 35689999999999999999999999999999999865 456999999999999999999999984
No 312
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=3.3e-15 Score=108.46 Aligned_cols=65 Identities=32% Similarity=0.547 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|+.||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |||.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~ 80 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGL 80 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCc
Confidence 4679999999999999999999999999988 677777789999999999999999999998 9974
No 313
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=9.3e-15 Score=108.59 Aligned_cols=68 Identities=29% Similarity=0.380 Sum_probs=58.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|+.||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|||.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 90 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY 90 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999999999999999999999999954433333338899999999999999999999999984
No 314
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.3e-14 Score=99.82 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=56.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCC
Confidence 356899999999999999999999999999999987 689999999999999999999984
No 315
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=5.9e-14 Score=100.99 Aligned_cols=62 Identities=18% Similarity=0.377 Sum_probs=57.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|++.|||.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~ 76 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGF 76 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCC
Confidence 45689999999999999999999999999999998743 789999999999999999999984
No 316
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.52 E-value=2e-14 Score=108.32 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=58.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCce--EEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLL--SAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~--~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
...++|||+|||+.+++++|+++|+.| .|. .|++++|+. |+++|||||+|.+.++|.+|++. +|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~ 105 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HK 105 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CC
Confidence 346799999999999999999999999 677 899999986 99999999999999999999984 44
No 317
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=5.2e-15 Score=108.02 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=62.7
Q ss_pred EeCCCCCCCHHHHHHHH------------HccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 117 VGNLPYSMTSSSLAEVF------------AEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 117 V~nLp~~~te~~l~~~F------------~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
+.+||+.+++++|++.| ++||.|.+|.++++. +++++|||||+|.+.++|.+|++.|||..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45666667777666555 999999999999887 57899999999999999999999999999999999
Q ss_pred EEecC
Q 023583 185 KVNFP 189 (280)
Q Consensus 185 ~v~~a 189 (280)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 318
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.52 E-value=3.3e-14 Score=113.82 Aligned_cols=68 Identities=31% Similarity=0.493 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
....++|||+|||+.+++++|+++|+.||.|..|.+..+. +|.++|||||+|.+.++|.+|++.|||.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 3456899999999999999999999999999999999998 8999999999999999999999999984
No 319
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.6e-14 Score=101.63 Aligned_cols=63 Identities=17% Similarity=0.340 Sum_probs=56.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|. +.++. +.++|||||+|.+.++|.+|++.|||.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGL 79 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 3468999999999999999999999999997 66664 467999999999999999999999984
No 320
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.51 E-value=5.2e-14 Score=120.80 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=71.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC-CceeEEe
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GRTVKVN 187 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~-g~~l~v~ 187 (280)
..+.++|||+|||.++++++|+++|+.||.|..++++.++ +|||||+|.+.++|.+|++.|||..|. |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3457899999999999999999999999999999999664 699999999999999999999999999 9999999
Q ss_pred cCC
Q 023583 188 FPE 190 (280)
Q Consensus 188 ~a~ 190 (280)
+++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 875
No 321
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.51 E-value=6.4e-14 Score=101.58 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|++||.|..+++. +++|||||+|.+.++|.+|+..|||.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 45799999999999999999999999999999987 45899999999999999999999984
No 322
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=7.7e-14 Score=97.78 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=57.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh-cCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM-NGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l-nG~ 280 (280)
...++|||+|||..+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|++.| ||.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~ 72 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKL 72 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCe
Confidence 45689999999999999999999999999999999853 799999999999999999998 763
No 323
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.3e-13 Score=101.95 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=70.1
Q ss_pred ccCCCCCeEEEeCCCCCCC-----------HHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh
Q 023583 107 AASDEAARLYVGNLPYSMT-----------SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (280)
Q Consensus 107 ~~~~~~~~l~V~nLp~~~t-----------e~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 175 (280)
....+.++|+|.||....+ +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 4556789999999944332 5899999999999999966 443 379999999999999999999999
Q ss_pred CCCcCCceeEEecCCCC
Q 023583 176 GSQIGGRTVKVNFPEVP 192 (280)
Q Consensus 176 g~~i~g~~l~v~~a~~~ 192 (280)
|..++||.|.|.++...
T Consensus 86 g~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGT 102 (112)
T ss_dssp TCEETTEECEEEECCSC
T ss_pred CCEECCcEEEEEEeCCC
Confidence 99999999999998643
No 324
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.50 E-value=4.1e-14 Score=103.37 Aligned_cols=81 Identities=21% Similarity=0.244 Sum_probs=70.7
Q ss_pred CCCCeEEEeCC--CCCCC--------HHHHHHHHHccCCeeEEEEeecCCC--CCceeEEEEEECCHHHHHHHHHHhhCC
Q 023583 110 DEAARLYVGNL--PYSMT--------SSSLAEVFAEAGTVASAEIVYDRVT--DRSRGFGFVTMGSVEEAKEAIRLFDGS 177 (280)
Q Consensus 110 ~~~~~l~V~nL--p~~~t--------e~~l~~~F~~~G~i~~v~~~~~~~~--~~~~g~afV~f~~~~~a~~a~~~l~g~ 177 (280)
.+++.|.+.|+ |.... +++|+++|++||.|.+|.|+++..+ ++++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999998 33333 4689999999999999999988754 368999999999999999999999999
Q ss_pred CcCCceeEEecCC
Q 023583 178 QIGGRTVKVNFPE 190 (280)
Q Consensus 178 ~i~g~~l~v~~a~ 190 (280)
.++||.|.|.+..
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999864
No 325
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2e-14 Score=105.96 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYA--GNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V--~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++||| +||++.+++++|+++|++||.|..|.+.. .||||||+|.+.++|.+|++.|||.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 45688999 77999999999999999999999988753 3799999999999999999999984
No 326
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=1.6e-15 Score=113.02 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=63.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceE--------EEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLS--------AKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~--------~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.++|||+|||+.+++++|+++|++||.|.. |.++.++.+|.++|||||+|.+.++|.+|++.|||.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 80 (116)
Confidence 4679999999999999999999999999999 899999889999999999999999999999999984
No 327
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=8e-14 Score=102.45 Aligned_cols=60 Identities=23% Similarity=0.434 Sum_probs=56.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~ 88 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGK 88 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 456899999999999999999999999999999987 799999999999999999999984
No 328
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.50 E-value=1.8e-14 Score=103.70 Aligned_cols=65 Identities=28% Similarity=0.396 Sum_probs=59.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLR----DAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+.. +|.++|||||+|.+.++|.+|++.|||.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGF 74 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 456899999999999999999 9999999999998863 5788999999999999999999999984
No 329
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.49 E-value=9.6e-14 Score=100.00 Aligned_cols=61 Identities=16% Similarity=0.419 Sum_probs=56.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~-~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+ .+++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|++.|||.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 34578999999998 99999999999999999999983 799999999999999999999984
No 330
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=5.1e-14 Score=115.47 Aligned_cols=78 Identities=17% Similarity=0.256 Sum_probs=69.1
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCe--eEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCc----
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTV--ASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGR---- 182 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i--~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~---- 182 (280)
..+.++|||+|||+++|+++|+++|++||.| ..++++.+. +.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~ 197 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPY 197 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSS
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCc
Confidence 3467899999999999999999999999999 899998775 55679999999999999999999999999886
Q ss_pred eeEEec
Q 023583 183 TVKVNF 188 (280)
Q Consensus 183 ~l~v~~ 188 (280)
++.|.+
T Consensus 198 p~~vk~ 203 (205)
T 3tyt_A 198 PYTLKL 203 (205)
T ss_dssp CEECEE
T ss_pred ceEEEe
Confidence 455554
No 331
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=1.7e-13 Score=116.52 Aligned_cols=84 Identities=27% Similarity=0.315 Sum_probs=75.2
Q ss_pred cCCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhC-CCcC---Cce
Q 023583 108 ASDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDG-SQIG---GRT 183 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g-~~i~---g~~ 183 (280)
...+..+|||+|||+.+|+++|+++|+.||.|..+.++.+. +|+++|||||+|.+.++|.+|++.|++ ..+. ||.
T Consensus 92 ~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~ 170 (261)
T 3sde_A 92 FATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRP 170 (261)
T ss_dssp ECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCB
T ss_pred ecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCce
Confidence 34567899999999999999999999999999999999995 899999999999999999999999954 4444 999
Q ss_pred eEEecCCCC
Q 023583 184 VKVNFPEVP 192 (280)
Q Consensus 184 l~v~~a~~~ 192 (280)
|.|.++...
T Consensus 171 i~v~~~~~~ 179 (261)
T 3sde_A 171 VIVEPMEQF 179 (261)
T ss_dssp CEEEECCCE
T ss_pred EEEeecccc
Confidence 999988743
No 332
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=3.2e-14 Score=103.14 Aligned_cols=60 Identities=33% Similarity=0.517 Sum_probs=56.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++|||+|||+.+++++|+++|++||.|..+.+..+ ++|||||+|.+.++|.+|++.|||.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~ 60 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGK 60 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCC
Confidence 47999999999999999999999999999999876 6899999999999999999999873
No 333
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.49 E-value=8.3e-14 Score=102.65 Aligned_cols=59 Identities=19% Similarity=0.395 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~-~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|++.|||.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~ 85 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGR 85 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 3579999999999 999999999999999999998 4899999999999999999999984
No 334
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.49 E-value=1e-13 Score=99.59 Aligned_cols=60 Identities=17% Similarity=0.441 Sum_probs=55.6
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGW-GLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~-~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|..|++.|||.
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~ 68 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQE 68 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 4578999999998 99999999999999999999984 789999999999999999999984
No 335
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.49 E-value=3.4e-14 Score=105.69 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=55.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|++||.|..|.++.+ |||||+|.+.++|.+||+.|||.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCC
Confidence 4589999999999999999999999999999999754 89999999999999999999984
No 336
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=1e-13 Score=103.30 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCC--C---CCHHHHHHHHHccCCeeEEEEeecCC----CCCceeEEEEEECCHHHHHHHHHHhhCCCcCC
Q 023583 111 EAARLYVGNLPY--S---MTSSSLAEVFAEAGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG 181 (280)
Q Consensus 111 ~~~~l~V~nLp~--~---~te~~l~~~F~~~G~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g 181 (280)
+.++|+|.|+-. + --+++|+++|++||.|.+|.|+++.. +++++|++||+|.+.++|.+|++.|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 788999999942 2 23689999999999999999998864 35788999999999999999999999999999
Q ss_pred ceeEEecCC
Q 023583 182 RTVKVNFPE 190 (280)
Q Consensus 182 ~~l~v~~a~ 190 (280)
|.|.|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999864
No 337
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.4e-13 Score=98.04 Aligned_cols=60 Identities=25% Similarity=0.459 Sum_probs=55.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|..+.+. ++||||+|.+.++|.+|++.|||.
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~ 67 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLDNT 67 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHTTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCC
Confidence 456899999999999999999999999999999987 459999999999999999999983
No 338
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=7.2e-14 Score=113.59 Aligned_cols=77 Identities=27% Similarity=0.473 Sum_probs=71.6
Q ss_pred CCCCeEEEeCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC-CceeEEe
Q 023583 110 DEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GRTVKVN 187 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~-g~~l~v~ 187 (280)
.+.++|||+|||..+++++|+++|+.|| .|..++++.+. +|||||+|.+.++|.+|++.|+|..++ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 99999997643 799999999999999999999999999 9999999
Q ss_pred cCCC
Q 023583 188 FPEV 191 (280)
Q Consensus 188 ~a~~ 191 (280)
+++.
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9763
No 339
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=5.9e-14 Score=103.69 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|++||.|..|.+.. ++|||||+|.+.++|.+|++.|||.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~ 69 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYS 69 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 357999999999999999999999999999998863 5789999999999999999999984
No 340
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.6e-14 Score=102.67 Aligned_cols=61 Identities=31% Similarity=0.555 Sum_probs=57.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|+.||.|..|.+..+ +|||||+|.+.++|.+|++.|||.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~ 84 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT 84 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCC
Confidence 4689999999999999999999999999999999865 799999999999999999999984
No 341
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2.5e-13 Score=98.07 Aligned_cols=61 Identities=28% Similarity=0.436 Sum_probs=55.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccC--CCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQ--PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~--g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~ 74 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGK 74 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCC
Confidence 3456899999999999999999999999 899988864 689999999999999999999983
No 342
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=1.4e-13 Score=114.67 Aligned_cols=78 Identities=27% Similarity=0.459 Sum_probs=71.7
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccC-CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC-CceeEE
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAG-TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG-GRTVKV 186 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~-g~~l~v 186 (280)
..+.++|||+|||+.+++++|+++|+.|| .|..++++.+ ++|||||+|.+.++|.+|++.|+|..++ |+.|.|
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEE
Confidence 34578999999999999999999999999 9999999754 3799999999999999999999999999 999999
Q ss_pred ecCCC
Q 023583 187 NFPEV 191 (280)
Q Consensus 187 ~~a~~ 191 (280)
.+++.
T Consensus 223 ~~a~~ 227 (229)
T 2adc_A 223 SFSKS 227 (229)
T ss_dssp EECSS
T ss_pred EEecC
Confidence 99864
No 343
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.1e-13 Score=98.16 Aligned_cols=60 Identities=30% Similarity=0.558 Sum_probs=55.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~ 66 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNGK 66 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCCC
Confidence 456899999999999999999999999999999987 459999999999999999999984
No 344
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.47 E-value=9.4e-14 Score=98.39 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=49.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHH
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQS 272 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~ 272 (280)
..+.++|||+|||+.+++++|+++|++||.|.+|+++++ +||||||+|.+.++|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH
Confidence 345689999999999999999999999999999999864 69999999999999984
No 345
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.46 E-value=2.1e-13 Score=102.85 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=55.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccE-EEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~-afV~f~~~e~A~~Al~~lnG~ 280 (280)
..|||+||++.+|+++|+++|++||.|.+|.++.+. +|+ |||+|.+.++|..|++.|||.
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~ 89 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQ 89 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCC
Confidence 578899999999999999999999999999887643 677 999999999999999999995
No 346
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.46 E-value=1.4e-13 Score=100.25 Aligned_cols=61 Identities=23% Similarity=0.399 Sum_probs=56.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|||+.+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|||.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~ 68 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGK 68 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCC
Confidence 3456899999999999999999999999999999986 569999999999999999999983
No 347
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=5.4e-13 Score=100.02 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=53.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccE-EEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGF-GFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~-afV~f~~~e~A~~Al~~lnG~ 280 (280)
..|||+||++.+++++|+++|++||.|..|+++. + .|| |||+|.+.++|..|++.|||.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3568999999999999999999999999999864 2 386 999999999999999999995
No 348
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.45 E-value=2.3e-14 Score=110.74 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=58.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEE--E---eeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK--V---IFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~--i---~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|||+|||+.+++++|+++|+.||.|..+. + +....+|+++|||||+|.+.++|.+|+..|||.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 115 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGY 115 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 3568999999999999999999999999998741 1 111237899999999999999999999999984
No 349
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=5.2e-14 Score=101.03 Aligned_cols=61 Identities=21% Similarity=0.511 Sum_probs=55.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
+.++|||+|||+.+++++|+++|+.||.|..+ ..+|.++|||||+|.+.++|.+|++.|||
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g 75 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG 75 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 46899999999999999999999999988766 33789999999999999999999999987
No 350
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.1e-13 Score=95.99 Aligned_cols=61 Identities=15% Similarity=0.270 Sum_probs=54.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|+.||.|..| +.++.+|+ ||||+|.+.++|.+|++ |||.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~ 67 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH 67 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe
Confidence 35799999999999999999999999999987 56665655 99999999999999999 9984
No 351
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.44 E-value=2e-13 Score=96.40 Aligned_cols=60 Identities=23% Similarity=0.247 Sum_probs=55.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|++| .|..+++. +++|||||+|.+.++|.+|++.|||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~ 63 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQY 63 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 45789999999999999999999999 99999883 67999999999999999999999983
No 352
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.44 E-value=1.7e-13 Score=107.19 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=56.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+|||+||++.+++++|+++|++||.|.+|.++.+ ..+|||||+|.+.++|.+|++.|||.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~ 107 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQ 107 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTB
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 357899999999999999999999999999998643 35899999999999999999999984
No 353
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.4e-13 Score=98.27 Aligned_cols=60 Identities=25% Similarity=0.470 Sum_probs=53.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCC-ceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPG-LLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~-v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
...++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.|||
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccC
Confidence 35689999999999999999999999999 6655552 479999999999999999999998
No 354
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.5e-13 Score=97.45 Aligned_cols=63 Identities=22% Similarity=0.172 Sum_probs=56.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEE-EeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK-VIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~-i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|+.||.|..++ ++.++.+ |.|||+|.+.++|.+|++.|||.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~ 77 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGF 77 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCC
Confidence 468999999999999999999999999999994 7776543 34999999999999999999984
No 355
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=9e-13 Score=94.76 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=55.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..+.++|||+|+ .+++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|++.|||.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~ 72 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT 72 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 345689999995 89999999999999999999984 56899999999999999999999983
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.42 E-value=7.9e-13 Score=107.27 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=76.7
Q ss_pred CHHHHHHHHHHh--hCCCcCCceeEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCCHHHHHHHhccCC
Q 023583 163 SVEEAKEAIRLF--DGSQIGGRTVKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQP 240 (280)
Q Consensus 163 ~~~~a~~a~~~l--~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g 240 (280)
+.+.+..|++.. ....+.+....|............ .. .......++|||+|||+.+++++|+++|++||
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~---~~-----~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVT---DE-----YKNDVKNRSVYIKGFPTDATLDDIKEWLEDKG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCC---HH-----HHHHHHHTEEEEECCCTTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccc---hh-----hhhccccCEEEecCCCCcCCHHHHHHHHhcCC
Confidence 557777888765 344555655555543211000000 00 00011247899999999999999999999999
Q ss_pred CceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 241 GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 241 ~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
.|..|++.++. +|.++|||||+|.+.++|.+|+..++
T Consensus 135 ~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~ 171 (193)
T 2voo_A 135 QVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG 171 (193)
T ss_dssp CEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT
T ss_pred CEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC
Confidence 99999999887 59999999999999999999998654
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.42 E-value=7.7e-13 Score=96.55 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=59.1
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHhccCCCceEEEEeeeCCC-CCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGW-----GLTSQGLRDAFQGQPGLLSAKVIFERYT-GRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~-----~~t~~~l~~~F~~~g~v~~~~i~~~~~~-g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++++|+|+||.. ..++++|++.|++||.|..+.++.++.+ +.++|+|||+|.+.++|.+|++.|||.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence 568999999963 2378999999999999999999988654 688999999999999999999999984
No 358
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.41 E-value=2.5e-13 Score=95.48 Aligned_cols=60 Identities=27% Similarity=0.666 Sum_probs=55.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccC----C-------CceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQ----P-------GLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~----g-------~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++|||+|||+.+++++|+++|++| | .|..+.+.++ +|||||+|.+.++|.+|+ .|||.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 45799999999999999999999999 8 8999988744 799999999999999999 99984
No 359
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=3.2e-12 Score=92.20 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=62.5
Q ss_pred CCeEEEeCCC-------CCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 112 AARLYVGNLP-------YSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 112 ~~~l~V~nLp-------~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
.++|.|.-.. ..+++++|+++|++||.|..|.++ ++++|||||+|.+.++|..|++.+ ..+.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeE
Confidence 4456665443 458999999999999999999997 467999999999999999999974 44689999
Q ss_pred EEecCCCCC
Q 023583 185 KVNFPEVPR 193 (280)
Q Consensus 185 ~v~~a~~~~ 193 (280)
.|.++..+.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987544
No 360
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1e-12 Score=92.31 Aligned_cols=57 Identities=23% Similarity=0.242 Sum_probs=50.1
Q ss_pred CCCe-EEEcCCCCCCCHHH----HHHHhccC-CCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHK-IYAGNLGWGLTSQG----LRDAFQGQ-PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~-l~V~nLp~~~t~~~----l~~~F~~~-g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+..+ |||+|||+.+++++ |+++|++| |.|.+| +| |+|||+|.+.++|.+|++.|||.
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~ 69 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENE 69 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCC
Confidence 3455 99999999999988 55899999 499988 33 99999999999999999999995
No 361
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=4.7e-13 Score=94.45 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=50.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHH
Q 023583 214 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSAL 274 (280)
Q Consensus 214 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al 274 (280)
..++|||+|||+.+++++|+++|++||.|..++++.+ ++|||||+|.+.++|++|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~ 59 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLC 59 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHh
Confidence 4589999999999999999999999999999998754 6899999999999997643
No 362
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.6e-12 Score=113.90 Aligned_cols=79 Identities=25% Similarity=0.372 Sum_probs=67.3
Q ss_pred cccCCCCCeEEEeC--CCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCc---C
Q 023583 106 VAASDEAARLYVGN--LPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI---G 180 (280)
Q Consensus 106 ~~~~~~~~~l~V~n--Lp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i---~ 180 (280)
.....+.++||||| |++.+||++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+ .
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 34467889999999 589999999999999999999987753 479999999999999999999999987 3
Q ss_pred Cc--eeEEecCC
Q 023583 181 GR--TVKVNFPE 190 (280)
Q Consensus 181 g~--~l~v~~a~ 190 (280)
|+ .+.|.+..
T Consensus 86 g~~~~ly~~~~~ 97 (345)
T 3tht_A 86 GQKITLYLNFVE 97 (345)
T ss_dssp SCEEECEEEECS
T ss_pred CCceEEEEEEee
Confidence 55 46666653
No 363
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.35 E-value=2.6e-12 Score=96.23 Aligned_cols=60 Identities=25% Similarity=0.376 Sum_probs=54.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+|+ .+++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|++.|||.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~ 96 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGT 96 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 45689999995 69999999999999999999985 56899999999999999999999984
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=8.6e-12 Score=92.19 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=65.5
Q ss_pred CCCCeEEEeCCCCCCC----------HHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCc
Q 023583 110 DEAARLYVGNLPYSMT----------SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQI 179 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~t----------e~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i 179 (280)
-+.+.|.+.|+=..-. +++|+++|++||.|.+|.+.++. ++|+|||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4677899998832211 45789999999999999987553 589999999999999999999999999
Q ss_pred CCceeEEecCC
Q 023583 180 GGRTVKVNFPE 190 (280)
Q Consensus 180 ~g~~l~v~~a~ 190 (280)
+||.|.|.++.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999875
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.29 E-value=5.1e-12 Score=105.18 Aligned_cols=62 Identities=21% Similarity=0.336 Sum_probs=57.3
Q ss_pred CCCCeEEEcCCCCCC---------CHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGL---------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~---------t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
...++|||+||+..+ ++++|+++|++||.|..|+++. +||||||+|.+.++|..|+++|||.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 456899999999998 7999999999999999999984 4899999999999999999999984
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=7.7e-12 Score=109.51 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=56.3
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 212 VDSPHKIYAGN--LGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 212 ~~~~~~l~V~n--Lp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++++|||+| |++.+++++|+++|++||.|..|.+.. +||||||+|.+.++|++|++.|||.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34678999999 578999999999999999999887642 4799999999999999999999994
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.26 E-value=8.4e-12 Score=91.02 Aligned_cols=67 Identities=19% Similarity=0.122 Sum_probs=57.7
Q ss_pred CCCeEEEcCC--CCCC--------CHHHHHHHhccCCCceEEEEeeeCCC--CCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNL--GWGL--------TSQGLRDAFQGQPGLLSAKVIFERYT--GRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nL--p~~~--------t~~~l~~~F~~~g~v~~~~i~~~~~~--g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+++.|.+.|+ |..+ .+++|++.|++||.|..+.|+++..+ +.++|+|||+|.+.++|.+|++.|||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5678999998 3333 34799999999999999999988755 468999999999999999999999984
No 368
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=3.6e-11 Score=88.74 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=54.4
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLT-----------SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t-----------~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+.++|+|+||..... +++|+++|++||.|..|.+ .++ .++|||||+|.+.++|.+|++.|||.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 4578999999954432 5899999999999999965 443 47999999999999999999999984
No 369
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.23 E-value=2e-11 Score=90.82 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=57.9
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHHHhccCCCceEEEEeeeCC----CCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGW-----GLTSQGLRDAFQGQPGLLSAKVIFERY----TGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~-----~~t~~~l~~~F~~~g~v~~~~i~~~~~----~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++++|+++|+-. .-.+++|++.|++||.|..|.|+++.. ++.++|+|||+|.+.++|.+|++.|||.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 567999999942 224789999999999999999998864 4577899999999999999999999983
No 370
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.18 E-value=5.8e-12 Score=91.74 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=51.2
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 220 AGNLGWGLTSQGLRDAF------------QGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 220 V~nLp~~~t~~~l~~~F------------~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+.||++.+++++|++.| ++||.|..|.+.++. +|+++|||||+|.+.++|.+|++.|||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~ 91 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNR 91 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCC
Confidence 45667777777766655 999999999999876 4889999999999999999999999984
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.8e-10 Score=82.96 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 225 WGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 225 ~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
..+++++|+++|++||.|..|.++ ++++|||||+|.+.++|..|++.++|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 468999999999999999999987 47799999999999999999998776
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.8e-10 Score=84.30 Aligned_cols=76 Identities=14% Similarity=0.117 Sum_probs=67.0
Q ss_pred CCCCCeEEEeCCCCC-CCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECC-HHHHHHHHHHhh--CCCcCCcee
Q 023583 109 SDEAARLYVGNLPYS-MTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGS-VEEAKEAIRLFD--GSQIGGRTV 184 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~-~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~-~~~a~~a~~~l~--g~~i~g~~l 184 (280)
-.....|+|+||+++ +++++|+++|+.||+|..|.++++.. .|||.|.+ .++|..|++.++ |..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 346778999999999 99999999999999999999987763 59999999 899999999984 788999988
Q ss_pred EEecCC
Q 023583 185 KVNFPE 190 (280)
Q Consensus 185 ~v~~a~ 190 (280)
.+.+..
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 887643
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=6.1e-10 Score=77.52 Aligned_cols=73 Identities=19% Similarity=0.274 Sum_probs=62.2
Q ss_pred CCCCCeEEEeCCC----CCCCH----HHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcC
Q 023583 109 SDEAARLYVGNLP----YSMTS----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (280)
Q Consensus 109 ~~~~~~l~V~nLp----~~~te----~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~ 180 (280)
..+..||+|.-.+ ...-. .+|.+.|..||.|..++++.++ +||+|.+.++|.+|++ |||..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 3466788888766 23333 6789999999999999999764 8999999999999998 9999999
Q ss_pred CceeEEecCC
Q 023583 181 GRTVKVNFPE 190 (280)
Q Consensus 181 g~~l~v~~a~ 190 (280)
||.|+|.++.
T Consensus 75 Gr~LkV~lkt 84 (91)
T 2dnr_A 75 NRTITIALKS 84 (91)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999999876
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.98 E-value=1.3e-09 Score=80.40 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=52.5
Q ss_pred CCCeEEEcCCCCCC----------CHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 214 SPHKIYAGNLGWGL----------TSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 214 ~~~~l~V~nLp~~~----------t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++++|.+.|+-... .+++|++.|++||.|..|.+.++. .+|+|||+|.+.++|.+|++.|||.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46789999984322 245889999999999999986542 5899999999999999999999984
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.1e-09 Score=81.05 Aligned_cols=61 Identities=10% Similarity=-0.019 Sum_probs=55.4
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCC-HHHHHHHHHHhc
Q 023583 212 VDSPHKIYAGNLGWG-LTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFET-AEDLQSALDAMN 278 (280)
Q Consensus 212 ~~~~~~l~V~nLp~~-~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~-~e~A~~Al~~ln 278 (280)
...++.|+|+||++. +++++|+++|++||.|.+|.+..+.. .|||+|.+ ..+|..|++.||
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhh
Confidence 456789999999999 99999999999999999999987653 59999999 899999999985
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.8e-09 Score=89.24 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHccCCeeEEEEeecCC----CCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEecCC
Q 023583 124 MTSSSLAEVFAEAGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVNFPE 190 (280)
Q Consensus 124 ~te~~l~~~F~~~G~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~~a~ 190 (280)
-.+++|+..|++||.|.++.++++.. +++++|++||+|.+.++|.+|++.|+|..++||.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 44678999999999999999986654 34899999999999999999999999999999999999864
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.4e-09 Score=74.86 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=62.7
Q ss_pred cCCCCCeEEEeCCCCC-----CCH----HHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC
Q 023583 108 ASDEAARLYVGNLPYS-----MTS----SSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (280)
Q Consensus 108 ~~~~~~~l~V~nLp~~-----~te----~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 178 (280)
...+..||+|.-++.. +-. .+|.+.|..||.|..++++.++ +||+|.+.++|.+|++ |||..
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 3457789999887643 222 5689999999999999999774 9999999999999998 99999
Q ss_pred cCCceeEEecCC
Q 023583 179 IGGRTVKVNFPE 190 (280)
Q Consensus 179 i~g~~l~v~~a~ 190 (280)
+.||.|+|.+..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998743
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.61 E-value=1.8e-07 Score=66.69 Aligned_cols=73 Identities=14% Similarity=0.226 Sum_probs=67.3
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHcc-----CCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEA-----GTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~-----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 183 (280)
.+..++|-+-|||-.+++..|+.+.+++ |.+..|.++.|. |-|+|+|.+...|-+|.-.|+|..|.||+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3457899999999999999999999999 999999999885 77999999999999998889999999999
Q ss_pred eEEe
Q 023583 184 VKVN 187 (280)
Q Consensus 184 l~v~ 187 (280)
|++.
T Consensus 92 Lr~g 95 (117)
T 2l9w_A 92 IRSG 95 (117)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9986
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.47 E-value=2.6e-07 Score=76.15 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=48.6
Q ss_pred CCCHHHHHHHhccCCCceEEEEeeeCC----CCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 226 GLTSQGLRDAFQGQPGLLSAKVIFERY----TGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 226 ~~t~~~l~~~F~~~g~v~~~~i~~~~~----~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.-.+++|++.|++||.|..+.+.++.. +|+++|++||+|.+.++|.+|++.|||.
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr 198 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR 198 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc
Confidence 346789999999999999999986654 4589999999999999999999999984
No 380
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=3e-07 Score=63.89 Aligned_cols=59 Identities=15% Similarity=0.202 Sum_probs=48.3
Q ss_pred CCCCeEEEcCCC----CCCCH----HHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLG----WGLTS----QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp----~~~t~----~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
++..+|+|.-.+ ..+-. .+|.+.|.+||.|..+++..+. +||+|.+.++|.+|++ |||+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~ 71 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGK 71 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTC
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCe
Confidence 355688887766 23333 5789999999999999998663 8999999999999998 9985
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=4.8e-07 Score=63.23 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=50.0
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 211 FVDSPHKIYAGNLGWG-----LTS----QGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 211 ~~~~~~~l~V~nLp~~-----~t~----~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
..++..+|+|.-++.. +-. .+|.+.|..||.|..+++..|+ +||+|.+.++|.+||+ |||+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGS
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCe
Confidence 3456679999887643 222 4688999999999999998663 9999999999999998 9985
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=2.5e-05 Score=55.26 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=72.4
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHc-----cCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCce
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAE-----AGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRT 183 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~-----~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~ 183 (280)
.....+|.|.|||..+.++.|.-+|+. -|+|..+.... +-|+|+|.+...|++.++. ....|+|..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeE
Confidence 345679999999999999999999987 26888887752 6789999999999999983 478999999
Q ss_pred eEEecCCCCCCCCcCCCCCCccCCCCCCCCCCCeEEEcCCCCCCC
Q 023583 184 VKVNFPEVPRGGERAAMGPKLQNSYQGFVDSPHKIYAGNLGWGLT 228 (280)
Q Consensus 184 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t 228 (280)
|.|.... ...+.+|++.||+..++
T Consensus 76 LsV~P~~---------------------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 76 LSLRPAP---------------------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp CEEEECC---------------------CCCCCCCCCCSCCCCCC
T ss_pred EEEEcCC---------------------CCCcceEeeecCCCCCC
Confidence 9997532 12346788888887764
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.86 E-value=5.9e-05 Score=53.81 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=56.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccC-----CCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQ-----PGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-----g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+..++|-+-|||..+++..|+.+...+ |.+..+.+..|- |-|+|+|.+...|.+|.-+|||.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ 85 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGS 85 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCe
Confidence 346789999999999999999999999 999999998763 56999999999999999999984
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.55 E-value=0.00035 Score=48.65 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=57.4
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCC--ceeEEEEEECCHHHHHHHHHHhhCCCcC
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~--~~g~afV~f~~~~~a~~a~~~l~g~~i~ 180 (280)
.+|.|++||+.+||+++.+.+..+..+.....+..+.+.+ ..+-|||.|++.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4789999999999999999999998887777776554432 3467999999999999999999998774
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.34 E-value=0.0011 Score=46.16 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=53.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCC--CCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG--RSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g--~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+|.|++||..+|++++.+.++..+.+.....+..+.+. ..-.-|+|.|.+.+++..-.+.+||.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 479999999999999999999999887777766554332 23467999999999999999999883
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.00059 Score=48.38 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=62.9
Q ss_pred CCCCeEEEeCCCCCC-C----HHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCcee
Q 023583 110 DEAARLYVGNLPYSM-T----SSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTV 184 (280)
Q Consensus 110 ~~~~~l~V~nLp~~~-t----e~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l 184 (280)
+-.++|+|.||+.++ . .+.++.+|..|+++......+.- .-..|.|.+.++|.+|-..||+..++|+++
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~ 76 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEM 76 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEEC
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCcee
Confidence 346789999998754 2 25789999999999887776442 346899999999999999999999999999
Q ss_pred EEecCC
Q 023583 185 KVNFPE 190 (280)
Q Consensus 185 ~v~~a~ 190 (280)
+|.++.
T Consensus 77 r~YFgq 82 (104)
T 1wey_A 77 KLYFAQ 82 (104)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999976
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.17 E-value=0.0024 Score=44.57 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
.+.++| +.|..+...||.++|+.||.| .|+.+-|. -|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 355666 999999999999999999954 45555443 7999999999999999876
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.96 E-value=0.0041 Score=43.41 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=47.5
Q ss_pred CCCCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh
Q 023583 109 SDEAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (280)
Q Consensus 109 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 175 (280)
..-.+.++| +.|..+...||.++|+.||.| .|+.+-|. -|||.|.+.+.|..|++.+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 334556777 999999999999999999944 36666553 69999999999999999764
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.0015 Score=45.68 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=44.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
..++| +.|..+...||.++|+.|| -..|+.+-|. -|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 45666 9999999999999999998 3445655442 7999999999999999876
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.77 E-value=0.0073 Score=42.63 Aligned_cols=54 Identities=19% Similarity=0.110 Sum_probs=45.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhcc-----CCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHH
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQG-----QPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDA 276 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~-----~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ 276 (280)
.++|.|.|||..+.++.|.-+|+. -|.|..+.... +-|+|+|.+.+.|++.|+.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC
Confidence 478999999999999999999976 25677776642 4699999999999999976
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.56 E-value=0.0076 Score=43.88 Aligned_cols=70 Identities=19% Similarity=0.212 Sum_probs=56.0
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCC-ceeEEecC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGG-RTVKVNFP 189 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g-~~l~v~~a 189 (280)
.+-|.|-+.|... ...|..+|++||.|.+.... ....+-.|.|.+..+|++|+.. ||..|+| -.|-|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 5578888888875 56778899999999988762 2357999999999999999995 9999985 45555553
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.33 E-value=0.0024 Score=44.76 Aligned_cols=69 Identities=13% Similarity=0.098 Sum_probs=49.6
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCC--ceeEEEEEECCHHHHHHHHHHhhCCCcC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDR--SRGFGFVTMGSVEEAKEAIRLFDGSQIG 180 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~--~~g~afV~f~~~~~a~~a~~~l~g~~i~ 180 (280)
+-+|.|++||+.+||+++.+.+..+-.+.....+..+.+.+ .-.-|||.|++.+++....+.++|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 45799999999999999877776654443333322222211 2356899999999999999999998764
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.19 E-value=0.0071 Score=42.30 Aligned_cols=54 Identities=24% Similarity=0.313 Sum_probs=45.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 175 (280)
+.++| +.|..+...||.++|+.|| -..|..+-|. -|||.|.+.+.|..|++.+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34556 9999999999999999999 4456667553 69999999999999999764
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.08 E-value=0.0037 Score=56.57 Aligned_cols=57 Identities=7% Similarity=0.069 Sum_probs=43.8
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHH
Q 023583 111 EAARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRL 173 (280)
Q Consensus 111 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 173 (280)
..+.|+|. .|..+++.+|.++|++||+|.++.+..+. .-||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 45789997 79999999999999999999999887654 47999999999998877653
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.99 E-value=0.0093 Score=41.73 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=48.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCC--CCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTG--RSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g--~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
.-+|.|+.||..+|++++.+.++..-.+.....+..+.+. ..-..|+|.|.+.++...-.+.++|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 4589999999999999999998876655443333222221 1234689999999999998888887
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.60 E-value=0.038 Score=40.16 Aligned_cols=58 Identities=9% Similarity=0.090 Sum_probs=47.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
.+-|.|-+.|.. ....|.+.|++||.|.+.... ....+-.|+|.+..+|++||. .||.
T Consensus 24 ~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ 81 (119)
T 1wwh_A 24 DTWVTVFGFPQA-SASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGR 81 (119)
T ss_dssp GGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTC
T ss_pred CCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCe
Confidence 467888888877 467888999999999988751 234699999999999999997 4663
No 397
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.30 E-value=0.03 Score=39.60 Aligned_cols=60 Identities=7% Similarity=-0.075 Sum_probs=48.8
Q ss_pred CCeEEEcCCCCCC-C----HHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhcCC
Q 023583 215 PHKIYAGNLGWGL-T----SQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGV 280 (280)
Q Consensus 215 ~~~l~V~nLp~~~-t----~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~lnG~ 280 (280)
+++|+|.||+..+ . ++.++++|..|+.+.....++.- .-..|.|.+.++|.+|...|||.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~ 69 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKT 69 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccc
Confidence 5789999998754 2 35789999999998887766432 25789999999999999999984
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.57 E-value=0.02 Score=51.70 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=40.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHH
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALD 275 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~ 275 (280)
+.|+|. .|...++.+|.++|++||.|..+....+. | -||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHh
Confidence 579997 79999999999999999999988766442 2 599999999999987764
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.66 E-value=0.072 Score=39.30 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=51.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeec---------CCCC-----CceeEEEEEECCHHHHHHHHHHhhCC
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYD---------RVTD-----RSRGFGFVTMGSVEEAKEAIRLFDGS 177 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~---------~~~~-----~~~g~afV~f~~~~~a~~a~~~l~g~ 177 (280)
...|.|-+-|.... ..+-++|++||.|..-.-..+ .... ...++..|.|.+..+|.+|+.. ||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 34566767766554 566789999999865211110 0001 1357889999999999999995 999
Q ss_pred CcCCceeEEecC
Q 023583 178 QIGGRTVKVNFP 189 (280)
Q Consensus 178 ~i~g~~l~v~~a 189 (280)
.|.|.-|-|.+.
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999987666654
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.40 E-value=0.31 Score=35.93 Aligned_cols=62 Identities=16% Similarity=0.075 Sum_probs=41.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHhccCCCceEEE-Eee------------eCCCC-CCccEEEEEeCCHHHHHHHHHHhcC
Q 023583 216 HKIYAGNLGWGLTSQGLRDAFQGQPGLLSAK-VIF------------ERYTG-RSRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 216 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~-i~~------------~~~~g-~~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
.-|.|-+.|.. ....+.+.|++||.|.+-. ... .+..+ ...++..|+|.+..+|.+||. -||
T Consensus 8 ~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 8 LAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred eEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 45667777654 5567888899999987622 111 00011 135688999999999999997 555
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.31 E-value=1.4 Score=40.26 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=44.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHhc
Q 023583 215 PHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMN 278 (280)
Q Consensus 215 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~ln 278 (280)
+..++|+ .|..+...+|.++|+.||. .+|+.+-+ ..|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3566666 8899999999999999995 45554433 379999999999999999873
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.58 E-value=3.5 Score=37.73 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=44.4
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhh
Q 023583 112 AARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFD 175 (280)
Q Consensus 112 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 175 (280)
.+.++|+ .|..+...+|.+.|+.||.+ .|+.+-+ ..|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566665 88999999999999999954 4555533 469999999999999999874
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=75.28 E-value=16 Score=24.66 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=47.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHhccCCCceEEEEeeeCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 023583 213 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAM 277 (280)
Q Consensus 213 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~e~A~~Al~~l 277 (280)
...|-+.|-|+|..+-..++.-.....|---+|..+ .|-|.|.|.+.++..-|++.|
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHH
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHH
Confidence 345788999999999999888777777777777765 456999999999999999877
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=54.00 E-value=28 Score=22.29 Aligned_cols=67 Identities=13% Similarity=0.288 Sum_probs=41.0
Q ss_pred eEEEeCCC-CCCCHHHHHHHHHccCC-----eeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCCcCCceeEEe
Q 023583 114 RLYVGNLP-YSMTSSSLAEVFAEAGT-----VASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQIGGRTVKVN 187 (280)
Q Consensus 114 ~l~V~nLp-~~~te~~l~~~F~~~G~-----i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~i~g~~l~v~ 187 (280)
++||..-- ..++..+|..++..-+. |-.|.+. -.|.||+-... .+..+++.|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45553221 23666777777776443 4455553 35789988754 5778888899999999999987
Q ss_pred cC
Q 023583 188 FP 189 (280)
Q Consensus 188 ~a 189 (280)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=52.45 E-value=35 Score=26.12 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=37.9
Q ss_pred eEEEeCCCC-C--------CCHHHHHHHH--HccCCeeEEEEeecCCCCCceeEEEEEECCH-HHHHHHHH
Q 023583 114 RLYVGNLPY-S--------MTSSSLAEVF--AEAGTVASAEIVYDRVTDRSRGFGFVTMGSV-EEAKEAIR 172 (280)
Q Consensus 114 ~l~V~nLp~-~--------~te~~l~~~F--~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~-~~a~~a~~ 172 (280)
++.|-|+|. . ....+|++.| ..|.++. ++.+.+. ..++|+|.|.|.+- ..-..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 455668876 1 3457899988 8998876 5555554 34789999999763 33444544
No 406
>3bbo_T Ribosomal protein L21; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=35.48 E-value=9.3 Score=31.14 Aligned_cols=21 Identities=29% Similarity=0.237 Sum_probs=0.0
Q ss_pred Cccchhhh-hhchhhhhhhccc
Q 023583 1 MAASTVSM-AASSSLCNKLYNL 21 (280)
Q Consensus 1 ~~~~~~~~-~~s~~~~~~~~~~ 21 (280)
||+.+.|+ |+|++.+-++++-
T Consensus 1 ~~~~~~~~~c~~~~~~~~~~~~ 22 (257)
T 3bbo_T 1 MASATLAFSCSSLCATLKLPQN 22 (257)
T ss_dssp ----------------------
T ss_pred CcceEEEeeeccceeeeeccCC
Confidence 88888888 7777776655543
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.95 E-value=25 Score=23.77 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=20.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHhcC
Q 023583 256 SRGFGFVTFETAEDLQSALDAMNG 279 (280)
Q Consensus 256 ~kg~afV~f~~~e~A~~Al~~lnG 279 (280)
.+||.||++...++...++..+.|
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cCCEEEEEEecchhHHHHHHCCCC
Confidence 689999999999998888877655
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=32.61 E-value=99 Score=23.63 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=33.3
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--ccCCCceEEEEeeeCCCCCCccEEEEEeCCH
Q 023583 217 KIYAGNLGW-G--------LTSQGLRDAF--QGQPGLLSAKVIFERYTGRSRGFGFVTFETA 267 (280)
Q Consensus 217 ~l~V~nLp~-~--------~t~~~l~~~F--~~~g~v~~~~i~~~~~~g~~kg~afV~f~~~ 267 (280)
.+.|-|+|. . .+..+|++.| ..|..+. ++.+..+ ....|++.|.|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 566777776 1 3457899977 9997766 5555554 34689999999753
No 409
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=28.94 E-value=50 Score=23.15 Aligned_cols=48 Identities=4% Similarity=-0.017 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHc-cCCeeE---EEEeecC-CCCCceeEEEEEECCHHHHHHH
Q 023583 122 YSMTSSSLAEVFAE-AGTVAS---AEIVYDR-VTDRSRGFGFVTMGSVEEAKEA 170 (280)
Q Consensus 122 ~~~te~~l~~~F~~-~G~i~~---v~~~~~~-~~~~~~g~afV~f~~~~~a~~a 170 (280)
...+..+|++.+.. |+.-.. |.=++.. -.|++.|||.| |.+.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677888776654 553222 2212222 23578899876 7888877653
No 410
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=26.03 E-value=1.5e+02 Score=20.58 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=26.7
Q ss_pred CeeEEEEeecCCCCCceeEEEEEECCHHHHHHHHHHhhCCC
Q 023583 138 TVASAEIVYDRVTDRSRGFGFVTMGSVEEAKEAIRLFDGSQ 178 (280)
Q Consensus 138 ~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 178 (280)
.|.++..... -+||-|||=.+..++..|++.+.+..
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4666655422 48999999999999999998655443
No 411
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=25.70 E-value=75 Score=21.30 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=20.1
Q ss_pred CceEEEEeeeCCCCCCccEEEEEeCC
Q 023583 241 GLLSAKVIFERYTGRSRGFGFVTFET 266 (280)
Q Consensus 241 ~v~~~~i~~~~~~g~~kg~afV~f~~ 266 (280)
.|.++++..-...|+-+|+|=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46777776666578889999999876
No 412
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=24.62 E-value=45 Score=22.96 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHc-cCCeeEEEEeecCC----CCCceeEEEEEECCHHHHHH
Q 023583 122 YSMTSSSLAEVFAE-AGTVASAEIVYDRV----TDRSRGFGFVTMGSVEEAKE 169 (280)
Q Consensus 122 ~~~te~~l~~~F~~-~G~i~~v~~~~~~~----~~~~~g~afV~f~~~~~a~~ 169 (280)
...+..+|++.+.. |+.-..+.++..-. .|++.|||.| |.+.+.|++
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35677777776654 44323333333222 2567888876 665655443
No 413
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=24.17 E-value=7.6 Score=29.10 Aligned_cols=27 Identities=26% Similarity=0.496 Sum_probs=15.7
Q ss_pred HHHHHHHccCCeeEEEEeecCCCCCceeEEEEEEC
Q 023583 128 SLAEVFAEAGTVASAEIVYDRVTDRSRGFGFVTMG 162 (280)
Q Consensus 128 ~l~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~ 162 (280)
++.++|...|.|+.... .+||+||...
T Consensus 3 ~~~~l~~~~G~Vkwfn~--------~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFNV--------RMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEEET--------TTTEEEEEEE
T ss_pred cccccccceeEEEEEEC--------CCCeeEEeeC
Confidence 44455666666654432 3899999875
No 414
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.32 E-value=78 Score=25.97 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=25.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHccCCeeEEEEe
Q 023583 113 ARLYVGNLPYSMTSSSLAEVFAEAGTVASAEIV 145 (280)
Q Consensus 113 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~~~ 145 (280)
..+.|+||||.++..-|.+++.. +.+..+.++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 46789999999999999999987 666555443
No 415
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=22.79 E-value=98 Score=23.25 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=26.4
Q ss_pred CCHHHHHHHhccCCCc---eEEEEeeeCCCCCCccEEEE
Q 023583 227 LTSQGLRDAFQGQPGL---LSAKVIFERYTGRSRGFGFV 262 (280)
Q Consensus 227 ~t~~~l~~~F~~~g~v---~~~~i~~~~~~g~~kg~afV 262 (280)
.++++|+++-...|.+ ++..+..|..+|+.+.+||-
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~ 41 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYH 41 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEE
Confidence 5889999999888876 33444445348888888875
No 416
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=22.63 E-value=1.5e+02 Score=22.23 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHccCCe---eEEEEeecCCCCCceeEEEEE
Q 023583 124 MTSSSLAEVFAEAGTV---ASAEIVYDRVTDRSRGFGFVT 160 (280)
Q Consensus 124 ~te~~l~~~F~~~G~i---~~v~~~~~~~~~~~~g~afV~ 160 (280)
.++++|+++-...|.+ .++++..+..+|+...|||-.
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5789999999999977 445566664488888888764
No 417
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=22.36 E-value=92 Score=21.48 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=20.1
Q ss_pred CceEEEEeeeCCCCCCccEEEEEeCC
Q 023583 241 GLLSAKVIFERYTGRSRGFGFVTFET 266 (280)
Q Consensus 241 ~v~~~~i~~~~~~g~~kg~afV~f~~ 266 (280)
.|.++++.+-...|+-+|+|=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 56777776665568889999999876
No 418
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=21.60 E-value=98 Score=21.54 Aligned_cols=26 Identities=12% Similarity=0.193 Sum_probs=19.6
Q ss_pred CceEEEEeeeCCCCCCccEEEEEeCC
Q 023583 241 GLLSAKVIFERYTGRSRGFGFVTFET 266 (280)
Q Consensus 241 ~v~~~~i~~~~~~g~~kg~afV~f~~ 266 (280)
.|.++++.+-...|+-+|+|=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46667776665578889999999876
No 419
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=20.45 E-value=2.2e+02 Score=19.58 Aligned_cols=49 Identities=10% Similarity=0.163 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHc-cCC---eeEEE-EeecCCCCCceeEEEEEECCHHHHHHHH
Q 023583 122 YSMTSSSLAEVFAE-AGT---VASAE-IVYDRVTDRSRGFGFVTMGSVEEAKEAI 171 (280)
Q Consensus 122 ~~~te~~l~~~F~~-~G~---i~~v~-~~~~~~~~~~~g~afV~f~~~~~a~~a~ 171 (280)
.+.+..+|++.+.. |+. +.-|. +...--.|++.|||.| |.+.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 45677888877765 443 22222 2222224678888876 77777766544
Done!