Query 023585
Match_columns 280
No_of_seqs 187 out of 1195
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 05:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03003 Probable polygalactur 100.0 4.1E-53 8.9E-58 396.6 34.0 254 1-269 130-393 (456)
2 PLN02188 polygalacturonase/gly 100.0 3.7E-52 8.1E-57 388.2 34.2 244 9-264 152-403 (404)
3 PLN02218 polygalacturonase ADP 100.0 2E-52 4.3E-57 392.6 32.1 238 9-265 189-431 (431)
4 PLN02793 Probable polygalactur 100.0 4.6E-52 1E-56 391.7 34.1 245 10-267 175-425 (443)
5 PLN02155 polygalacturonase 100.0 8.4E-52 1.8E-56 384.4 33.2 244 10-266 143-393 (394)
6 PLN03010 polygalacturonase 100.0 6.9E-50 1.5E-54 372.5 33.0 241 14-267 159-405 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.6E-49 3.5E-54 363.9 29.5 238 1-255 77-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 6.4E-32 1.4E-36 257.1 18.4 169 10-179 236-404 (542)
9 PLN03010 polygalacturonase 99.9 2.4E-22 5.2E-27 187.8 25.4 203 13-241 131-351 (409)
10 PLN03003 Probable polygalactur 99.9 2E-22 4.4E-27 189.7 24.9 202 13-240 105-333 (456)
11 PLN02218 polygalacturonase ADP 99.9 1.9E-22 4.2E-27 189.9 23.9 202 13-240 148-384 (431)
12 PF00295 Glyco_hydro_28: Glyco 99.9 3.4E-22 7.3E-27 183.4 23.7 203 12-240 51-284 (326)
13 PLN02793 Probable polygalactur 99.9 7.1E-22 1.5E-26 186.9 26.1 201 13-239 135-369 (443)
14 PLN02155 polygalacturonase 99.9 3.2E-21 7E-26 179.8 26.6 202 13-240 107-339 (394)
15 PLN02188 polygalacturonase/gly 99.9 9E-21 1.9E-25 177.5 27.8 204 13-240 114-350 (404)
16 PF03718 Glyco_hydro_49: Glyco 99.7 3.3E-14 7.1E-19 133.8 22.8 197 13-240 318-555 (582)
17 COG5434 PGU1 Endopygalactoruna 99.6 4.5E-14 9.7E-19 135.4 15.5 155 34-212 237-398 (542)
18 PF12541 DUF3737: Protein of u 99.2 7.2E-11 1.6E-15 102.5 9.0 134 7-178 86-230 (277)
19 TIGR03805 beta_helix_1 paralle 99.0 1.5E-08 3.1E-13 92.8 15.9 139 17-172 59-202 (314)
20 PF03718 Glyco_hydro_49: Glyco 98.7 3.2E-07 7E-12 87.2 15.2 196 18-238 275-514 (582)
21 TIGR03805 beta_helix_1 paralle 98.7 1.8E-06 3.9E-11 79.1 17.6 152 13-180 78-250 (314)
22 PF13229 Beta_helix: Right han 98.6 4.1E-07 8.9E-12 73.5 10.4 139 15-179 3-144 (158)
23 PF12541 DUF3737: Protein of u 98.5 5.6E-07 1.2E-11 78.5 9.9 102 17-150 114-231 (277)
24 TIGR03808 RR_plus_rpt_1 twin-a 98.5 3.2E-06 7E-11 79.5 14.5 131 9-150 132-290 (455)
25 smart00656 Amb_all Amb_all dom 98.4 3.4E-06 7.5E-11 71.7 11.3 110 21-144 16-144 (190)
26 PF05048 NosD: Periplasmic cop 98.2 4.9E-05 1.1E-09 66.5 14.5 136 13-178 14-150 (236)
27 TIGR03808 RR_plus_rpt_1 twin-a 98.2 4.3E-05 9.4E-10 72.0 14.6 140 12-175 106-285 (455)
28 PF00544 Pec_lyase_C: Pectate 98.2 2.5E-05 5.4E-10 67.0 11.4 110 20-144 20-158 (200)
29 COG3866 PelB Pectate lyase [Ca 98.2 3.7E-05 8E-10 68.5 12.4 128 14-144 94-229 (345)
30 PF05048 NosD: Periplasmic cop 98.1 8.1E-05 1.7E-09 65.1 12.8 115 14-151 37-152 (236)
31 PF13229 Beta_helix: Right han 98.0 6.2E-05 1.4E-09 60.5 10.6 121 12-152 23-146 (158)
32 PF12708 Pectate_lyase_3: Pect 97.9 0.00088 1.9E-08 57.4 16.2 119 46-177 94-224 (225)
33 smart00656 Amb_all Amb_all dom 97.6 0.0031 6.8E-08 53.6 14.8 143 14-167 33-188 (190)
34 PF12708 Pectate_lyase_3: Pect 97.5 0.0014 3.1E-08 56.0 11.6 104 23-148 94-224 (225)
35 COG3866 PelB Pectate lyase [Ca 97.4 0.013 2.9E-07 52.5 15.9 118 14-142 118-249 (345)
36 PF00544 Pec_lyase_C: Pectate 96.6 0.0088 1.9E-07 51.2 7.9 117 18-144 43-180 (200)
37 COG3420 NosD Nitrous oxidase a 94.7 1.5 3.2E-05 40.3 14.3 72 20-91 76-179 (408)
38 PRK10123 wcaM putative colanic 94.0 0.32 7E-06 43.7 8.3 150 13-173 210-374 (464)
39 PLN02773 pectinesterase 93.9 2.1 4.6E-05 39.3 13.6 111 41-173 99-212 (317)
40 PLN02480 Probable pectinestera 92.4 7.3 0.00016 36.2 15.0 116 37-173 126-252 (343)
41 PLN02480 Probable pectinestera 90.8 8.7 0.00019 35.7 13.6 82 65-173 127-218 (343)
42 PLN02773 pectinesterase 90.7 8.3 0.00018 35.4 13.4 135 17-176 98-243 (317)
43 PF07602 DUF1565: Protein of u 89.5 4.6 0.0001 35.7 10.3 48 106-153 123-172 (246)
44 PLN02682 pectinesterase family 87.6 21 0.00046 33.5 13.8 112 41-173 160-280 (369)
45 PLN02708 Probable pectinestera 87.1 18 0.00039 35.9 13.8 111 41-173 327-449 (553)
46 PF07602 DUF1565: Protein of u 86.9 9.2 0.0002 33.8 10.5 105 37-151 90-195 (246)
47 PF03211 Pectate_lyase: Pectat 86.5 21 0.00045 30.9 14.7 129 44-206 61-194 (215)
48 PRK10531 acyl-CoA thioesterase 85.4 27 0.00058 33.4 13.4 124 41-173 203-336 (422)
49 PF01696 Adeno_E1B_55K: Adenov 85.3 11 0.00023 35.6 10.5 64 42-121 119-182 (386)
50 PLN02432 putative pectinestera 85.2 29 0.00063 31.5 13.6 109 42-172 92-204 (293)
51 PLN02634 probable pectinestera 85.2 27 0.00058 32.7 13.1 110 42-173 147-266 (359)
52 PRK10531 acyl-CoA thioesterase 85.1 37 0.00079 32.5 14.8 145 17-176 202-379 (422)
53 TIGR03804 para_beta_helix para 84.9 1.4 3.1E-05 27.6 3.4 26 65-90 2-27 (44)
54 PLN02916 pectinesterase family 84.4 36 0.00078 33.3 14.0 109 43-173 276-392 (502)
55 PF01696 Adeno_E1B_55K: Adenov 83.8 5.5 0.00012 37.4 8.0 102 19-140 119-221 (386)
56 PF01095 Pectinesterase: Pecti 83.7 14 0.0003 33.6 10.5 110 43-173 86-202 (298)
57 PLN02665 pectinesterase family 83.3 41 0.00088 31.6 13.9 115 38-174 148-273 (366)
58 PLN02708 Probable pectinestera 83.1 51 0.0011 32.8 14.8 143 13-176 323-490 (553)
59 PRK10123 wcaM putative colanic 83.0 23 0.0005 32.1 11.1 25 121-145 140-164 (464)
60 PLN02170 probable pectinestera 83.0 44 0.00095 33.0 14.0 112 41-174 310-428 (529)
61 PLN02671 pectinesterase 82.3 44 0.00095 31.3 13.7 111 41-172 151-269 (359)
62 PLN02713 Probable pectinestera 82.1 34 0.00073 34.1 13.1 109 43-173 339-455 (566)
63 TIGR03804 para_beta_helix para 81.7 2.2 4.8E-05 26.7 3.3 41 37-82 1-41 (44)
64 PLN02497 probable pectinestera 81.0 46 0.00099 30.8 12.8 112 41-173 112-239 (331)
65 PLN02301 pectinesterase/pectin 80.9 45 0.00098 33.1 13.5 110 42-173 321-438 (548)
66 PLN02176 putative pectinestera 80.9 48 0.001 30.8 13.4 110 42-173 120-246 (340)
67 PLN02933 Probable pectinestera 80.8 51 0.0011 32.5 13.7 111 42-173 303-420 (530)
68 PLN02201 probable pectinestera 80.8 61 0.0013 32.0 14.5 111 41-173 290-408 (520)
69 PLN02745 Putative pectinestera 80.7 54 0.0012 32.9 14.1 110 42-173 370-487 (596)
70 PLN02665 pectinesterase family 80.7 46 0.001 31.3 12.9 135 17-176 150-301 (366)
71 COG3420 NosD Nitrous oxidase a 80.4 15 0.00033 34.0 9.2 63 13-80 121-190 (408)
72 PF01095 Pectinesterase: Pecti 80.4 32 0.00069 31.3 11.6 141 11-176 78-239 (298)
73 PLN02682 pectinesterase family 79.7 55 0.0012 30.8 13.8 134 17-176 159-308 (369)
74 PLN02304 probable pectinestera 79.6 56 0.0012 30.8 13.7 110 42-172 160-286 (379)
75 PLN02217 probable pectinestera 78.0 43 0.00094 34.0 12.5 46 43-88 336-382 (670)
76 PLN02698 Probable pectinestera 77.6 72 0.0016 31.3 13.6 19 70-88 297-315 (497)
77 PLN02506 putative pectinestera 77.3 24 0.00051 34.9 10.3 111 40-172 315-433 (537)
78 PF09251 PhageP22-tail: Salmon 77.0 14 0.0003 35.2 8.1 80 69-153 262-355 (549)
79 PLN02698 Probable pectinestera 76.9 56 0.0012 32.0 12.7 57 20-83 269-331 (497)
80 PLN02484 probable pectinestera 76.4 63 0.0014 32.4 13.1 110 42-173 358-475 (587)
81 PLN02488 probable pectinestera 76.3 82 0.0018 31.0 14.4 111 43-174 283-400 (509)
82 PLN02671 pectinesterase 75.6 71 0.0015 29.9 13.3 134 17-176 150-298 (359)
83 PLN02468 putative pectinestera 75.1 78 0.0017 31.6 13.3 111 41-173 342-460 (565)
84 PLN02314 pectinesterase 74.9 68 0.0015 32.1 12.9 111 42-174 363-481 (586)
85 PLN02995 Probable pectinestera 74.9 65 0.0014 31.9 12.6 110 43-173 311-427 (539)
86 PLN02176 putative pectinestera 73.0 80 0.0017 29.3 12.9 136 14-176 116-274 (340)
87 PLN03043 Probable pectinestera 72.4 39 0.00084 33.5 10.4 13 161-173 416-428 (538)
88 PLN02416 probable pectinestera 72.4 34 0.00073 33.9 10.0 110 42-173 315-432 (541)
89 PLN02468 putative pectinestera 71.7 38 0.00083 33.7 10.3 58 70-144 344-406 (565)
90 PLN02217 probable pectinestera 71.3 99 0.0021 31.5 13.1 144 11-175 328-488 (670)
91 PLN02197 pectinesterase 70.6 49 0.0011 33.1 10.7 110 42-173 362-480 (588)
92 PLN02506 putative pectinestera 68.5 1.3E+02 0.0028 29.9 13.2 139 11-176 310-462 (537)
93 PLN02995 Probable pectinestera 67.7 1.3E+02 0.0029 29.8 13.9 140 18-177 309-465 (539)
94 PLN02634 probable pectinestera 67.1 1.1E+02 0.0024 28.6 14.6 136 14-176 143-294 (359)
95 PLN02990 Probable pectinestera 66.9 56 0.0012 32.6 10.3 112 42-174 345-463 (572)
96 PLN02432 putative pectinestera 65.6 1.1E+02 0.0023 27.9 13.7 133 18-176 91-233 (293)
97 PLN02314 pectinesterase 65.6 1.5E+02 0.0033 29.7 13.5 144 11-176 356-512 (586)
98 PLN02416 probable pectinestera 65.4 1.2E+02 0.0027 30.1 12.2 144 11-176 308-469 (541)
99 PLN02304 probable pectinestera 64.7 1.3E+02 0.0028 28.5 14.4 134 18-176 159-315 (379)
100 PLN02497 probable pectinestera 64.7 1.2E+02 0.0026 28.1 13.7 133 18-176 112-267 (331)
101 PLN02313 Pectinesterase/pectin 64.2 67 0.0014 32.2 10.3 110 42-173 360-477 (587)
102 PLN02745 Putative pectinestera 63.8 1.7E+02 0.0036 29.5 14.6 144 12-176 364-524 (596)
103 PLN02301 pectinesterase/pectin 61.1 1.8E+02 0.0039 28.9 14.2 139 18-176 320-475 (548)
104 PLN02713 Probable pectinestera 60.3 1.9E+02 0.0041 28.9 13.2 145 11-176 331-492 (566)
105 PLN03043 Probable pectinestera 59.0 1.9E+02 0.0042 28.7 14.5 46 131-176 415-465 (538)
106 smart00710 PbH1 Parallel beta- 57.3 13 0.00029 19.3 2.5 19 133-151 3-22 (26)
107 PLN02170 probable pectinestera 57.2 2.1E+02 0.0045 28.4 13.9 134 17-176 309-455 (529)
108 PLN02916 pectinesterase family 54.5 2.2E+02 0.0048 28.0 14.7 140 17-176 273-429 (502)
109 PLN02197 pectinesterase 54.3 2.4E+02 0.0053 28.3 13.2 142 14-176 358-517 (588)
110 PLN02201 probable pectinestera 53.8 2.3E+02 0.0051 28.0 14.7 139 18-176 290-445 (520)
111 COG4677 PemB Pectin methyleste 52.1 48 0.001 30.6 6.3 122 11-144 159-286 (405)
112 PLN02933 Probable pectinestera 51.6 2.6E+02 0.0055 27.8 14.0 145 11-176 296-457 (530)
113 PF03211 Pectate_lyase: Pectat 51.5 1.6E+02 0.0035 25.5 14.3 133 14-167 56-194 (215)
114 PF08480 Disaggr_assoc: Disagg 49.8 1.3E+02 0.0029 25.4 8.1 13 131-143 33-45 (198)
115 PLN02313 Pectinesterase/pectin 48.7 3E+02 0.0064 27.7 12.7 139 18-176 359-514 (587)
116 PF09251 PhageP22-tail: Salmon 44.4 2E+02 0.0044 27.7 9.3 66 103-170 262-347 (549)
117 COG4677 PemB Pectin methyleste 43.8 1.2E+02 0.0026 28.1 7.6 64 70-144 193-266 (405)
118 PLN02484 probable pectinestera 40.9 3.9E+02 0.0085 26.9 14.6 139 18-176 357-512 (587)
119 PF12251 zf-SNAP50_C: snRNA-ac 38.0 50 0.0011 28.1 4.1 44 15-58 76-121 (196)
120 PLN02990 Probable pectinestera 33.1 5.2E+02 0.011 25.9 13.7 142 14-176 341-499 (572)
121 PLN02488 probable pectinestera 27.4 6.1E+02 0.013 25.0 14.3 139 18-176 281-436 (509)
122 PF14592 Chondroitinas_B: Chon 25.6 2.8E+02 0.0061 26.6 7.2 23 70-92 198-223 (425)
No 1
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=4.1e-53 Score=396.59 Aligned_cols=254 Identities=30% Similarity=0.450 Sum_probs=224.6
Q ss_pred CcccCCCCCCCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEE
Q 023585 1 MWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYI 80 (280)
Q Consensus 1 ~~~~~~~~~~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i 80 (280)
||..+ ..||++++|.+|+|++|+||+++|||+|++++..|++|+|++++|.++.+.+|+||||+.+|+||+|+||+|
T Consensus 130 wW~~~---~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I 206 (456)
T PLN03003 130 WWEHK---GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCII 206 (456)
T ss_pred hhhcc---cCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEE
Confidence 77653 479999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred EcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceec----CCEEeEEEEeeEEEeeCcEEEEEEEcCC
Q 023585 81 STGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETS----GGVENVLAEHINLYNVGVGIHVKTNIGR 156 (280)
Q Consensus 81 ~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~----g~i~nI~~~n~~i~~~~~gi~Iks~~g~ 156 (280)
.+|||||++|++ ++||+|+||+|.. +|||+|||++. +.|+||+|+||++.++.+|++||++.|+
T Consensus 207 ~tGDDCIaiksg-----------s~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg 274 (456)
T PLN03003 207 ATGDDCIAINSG-----------TSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGG 274 (456)
T ss_pred ecCCCeEEeCCC-----------CccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCCC
Confidence 999999999996 7999999999975 89999999974 4599999999999999999999999988
Q ss_pred CceEEEEEEEeEEEcccCeeEEEEeeeCCCC-CCCC-CCCCCCeEEeEEEEEEEEeccC-eeEEEEecCCCCeecEEEEe
Q 023585 157 GGFIRNITVSDVYMENARKGIKIAGDVGDHP-DDKF-NPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSN 233 (280)
Q Consensus 157 ~g~v~nV~f~ni~~~~~~~~i~i~~~y~~~~-~~~~-~~~~~~~i~nIt~~NI~~~~~~-~~~~i~g~~~~~i~~i~~~N 233 (280)
+|.|+||+|+||+|+++.+||.|++.|...+ ...+ .+...+.|+||+|+||+++... .++.|.|.++.||+||+|+|
T Consensus 275 ~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~n 354 (456)
T PLN03003 275 SGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRD 354 (456)
T ss_pred CeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEE
Confidence 8999999999999999999999999997432 1111 1222368999999999998654 57889999999999999999
Q ss_pred EEEEeeC-C-CCCCCeEeeeeecCcccccCc-CCCCCCC
Q 023585 234 INLQGVA-G-PTSPPLKCSDVSGSAYQVKPW-PCSELSS 269 (280)
Q Consensus 234 v~i~~~~-~-~~~~~~~c~~~~~~~~~~~p~-~c~~~~~ 269 (280)
|.++... + +.+..+.|.||.|....+.|+ +|++...
T Consensus 355 i~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~~ 393 (456)
T PLN03003 355 MKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELST 393 (456)
T ss_pred EEEEecCCCCCCccCcEEeccccccCceECCCCccccCC
Confidence 9999873 2 334579999999999877766 7998644
No 2
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=3.7e-52 Score=388.22 Aligned_cols=244 Identities=28% Similarity=0.411 Sum_probs=217.3
Q ss_pred CCCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEE
Q 023585 9 FTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVA 88 (280)
Q Consensus 9 ~~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~ia 88 (280)
..||++|.|.+|+|++|+||+++|||+|++++..|++|+|++++|.++.+.+|+||||+.+|+||+|+||+|.+|||||+
T Consensus 152 ~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 152 KLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred CcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEE
Confidence 46999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred EecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcc----eecCCEEeEEEEeeEEEeeCcEEEEEEEcC--CCceEEE
Q 023585 89 VKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS----ETSGGVENVLAEHINLYNVGVGIHVKTNIG--RGGFIRN 162 (280)
Q Consensus 89 iksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs----~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g--~~g~v~n 162 (280)
+|++ ++||+|+||.|.. +|||+||| ++.+.|+||+|+||++.++.+|++||+|.+ ++|.|+|
T Consensus 232 iksg-----------~~nI~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~n 299 (404)
T PLN02188 232 IGQG-----------NSQVTITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATN 299 (404)
T ss_pred EccC-----------CccEEEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEE
Confidence 9985 7899999999965 79999999 556889999999999999999999999975 3589999
Q ss_pred EEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccC-eeEEEEecCCCCeecEEEEeEEEEeeCC
Q 023585 163 ITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAG 241 (280)
Q Consensus 163 V~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~-~~~~i~g~~~~~i~~i~~~Nv~i~~~~~ 241 (280)
|+|+||+|+++.+||.|++.|...+.+...+...+.|+||+|+||+++... .++.|.|.++.||+||+|+||+++.+.+
T Consensus 300 I~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g 379 (404)
T PLN02188 300 MTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSG 379 (404)
T ss_pred EEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCC
Confidence 999999999999999999988643322111122358999999999998764 5788999999999999999999998765
Q ss_pred CCCCCeEeeeeecCcc-cccCcCC
Q 023585 242 PTSPPLKCSDVSGSAY-QVKPWPC 264 (280)
Q Consensus 242 ~~~~~~~c~~~~~~~~-~~~p~~c 264 (280)
..+..+.|.+++|... .+.|.+|
T Consensus 380 ~~~~~~~C~nv~g~~~g~~~p~~C 403 (404)
T PLN02188 380 EGGTSSSCENVRAKYIGTQIPPPC 403 (404)
T ss_pred CCCcCceeEcceeEEcccCcCCCC
Confidence 5455799999999997 4667778
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2e-52 Score=392.61 Aligned_cols=238 Identities=30% Similarity=0.448 Sum_probs=216.4
Q ss_pred CCCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEE
Q 023585 9 FTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVA 88 (280)
Q Consensus 9 ~~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~ia 88 (280)
..||++|.|.+|+|++|+||+|+|||+|++++..|+||+|+|++|.++.+.+|+||||+.+|+||+|+||+|.+|||||+
T Consensus 189 ~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 189 TKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred CcCCEEEEEEccccEEEeCeEEEcCCCEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEE
Confidence 35999999999999999999999999999999999999999999999878899999999999999999999999999999
Q ss_pred EecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceec----CCEEeEEEEeeEEEeeCcEEEEEEEcCCCceEEEEE
Q 023585 89 VKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETS----GGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNIT 164 (280)
Q Consensus 89 iksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~----g~i~nI~~~n~~i~~~~~gi~Iks~~g~~g~v~nV~ 164 (280)
||++ ++||+|+||+|.. +|||+|||++. +.|+||+|+||++.++.+|+|||+++|++|.|+||+
T Consensus 269 Iksg-----------s~nI~I~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~ 336 (431)
T PLN02218 269 IESG-----------SQNVQINDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNII 336 (431)
T ss_pred ecCC-----------CceEEEEeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEE
Confidence 9996 8999999999965 89999999973 579999999999999999999999999999999999
Q ss_pred EEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccC-eeEEEEecCCCCeecEEEEeEEEEeeCCCC
Q 023585 165 VSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPT 243 (280)
Q Consensus 165 f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~-~~~~i~g~~~~~i~~i~~~Nv~i~~~~~~~ 243 (280)
|+||+|+++.+||.|++.|...+.+...+. .+.|+||+|+||+++.+. .++.|.|.++.||+||+|+||++++.
T Consensus 337 f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s-~v~I~nI~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~---- 411 (431)
T PLN02218 337 FQNIQMENVKNPIIIDQDYCDKSKCTSQQS-AVQVKNVVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG---- 411 (431)
T ss_pred EEeEEEEcccccEEEEeeccCCCCCCCCCC-CeEEEEEEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC----
Confidence 999999999999999999975433322233 358999999999999764 67899999999999999999999852
Q ss_pred CCCeEeeeeecCcccccCcCCC
Q 023585 244 SPPLKCSDVSGSAYQVKPWPCS 265 (280)
Q Consensus 244 ~~~~~c~~~~~~~~~~~p~~c~ 265 (280)
...|.||.+...+..|+.|.
T Consensus 412 --~~~c~n~~~~~~~~~~p~c~ 431 (431)
T PLN02218 412 --KATCTNANVVDKGAVSPQCN 431 (431)
T ss_pred --eeeEEEeeEEEcccCCCCCC
Confidence 35799999999988887884
No 4
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=4.6e-52 Score=391.68 Aligned_cols=245 Identities=29% Similarity=0.401 Sum_probs=219.4
Q ss_pred CCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEE
Q 023585 10 TRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAV 89 (280)
Q Consensus 10 ~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iai 89 (280)
.||++|+|.+|+|++|+||+|+|||.|++++..|+||+|+|++|.++...+|+||||+.+|+||+|+||+|.++||||++
T Consensus 175 ~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIai 254 (443)
T PLN02793 175 HAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISI 254 (443)
T ss_pred CCceEEEEEeeccEEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEe
Confidence 58999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred ecCCCccCcccCCCeecEEEEeEEEeCCCceEEEccee----cCCEEeEEEEeeEEEeeCcEEEEEEEcCCCceEEEEEE
Q 023585 90 KSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSET----SGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITV 165 (280)
Q Consensus 90 ksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~----~g~i~nI~~~n~~i~~~~~gi~Iks~~g~~g~v~nV~f 165 (280)
|++ ++||+|+||+|.. +|||+|||++ .+.|+||+|+||+|.++.+|++||+++|++|.|+||+|
T Consensus 255 k~~-----------s~nI~I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf 322 (443)
T PLN02793 255 VGN-----------SSRIKIRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITF 322 (443)
T ss_pred cCC-----------cCCEEEEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEE
Confidence 984 8999999999965 7999999974 46899999999999999999999999988899999999
Q ss_pred EeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccC-eeEEEEecCCCCeecEEEEeEEEEeeCCCCC
Q 023585 166 SDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPTS 244 (280)
Q Consensus 166 ~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~-~~~~i~g~~~~~i~~i~~~Nv~i~~~~~~~~ 244 (280)
+||+|+++.+||.|++.|.........+...+.|+||+|+||+++... .++.|.|.++.||+||+|+||+++...++ .
T Consensus 323 ~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~ 401 (443)
T PLN02793 323 QNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-F 401 (443)
T ss_pred EeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-C
Confidence 999999999999999988642211111122358999999999999753 57899999999999999999999988665 4
Q ss_pred CCeEeeeeecCccc-ccCcCCCCC
Q 023585 245 PPLKCSDVSGSAYQ-VKPWPCSEL 267 (280)
Q Consensus 245 ~~~~c~~~~~~~~~-~~p~~c~~~ 267 (280)
..+.|.|++|...+ +.|.||.+.
T Consensus 402 ~~~~C~n~~g~~~~~~~p~~C~~~ 425 (443)
T PLN02793 402 TESFCWEAYGSSSGQVYPPPCFSD 425 (443)
T ss_pred CCcEEEccEEeECCeEcCCccccC
Confidence 56889999999976 678899864
No 5
>PLN02155 polygalacturonase
Probab=100.00 E-value=8.4e-52 Score=384.36 Aligned_cols=244 Identities=30% Similarity=0.424 Sum_probs=217.2
Q ss_pred CCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEE
Q 023585 10 TRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAV 89 (280)
Q Consensus 10 ~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iai 89 (280)
.||++|+|.+|++++|+||+++|||.|++++..|+||+|++++|.++.+.+|+||||+.+|+||+|+||+|.+|||||++
T Consensus 143 ~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIai 222 (394)
T PLN02155 143 PGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAI 222 (394)
T ss_pred CcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEc
Confidence 57899999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred ecCCCccCcccCCCeecEEEEeEEEeCCCceEEEccee----cCCEEeEEEEeeEEEeeCcEEEEEEEcC-CCceEEEEE
Q 023585 90 KSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSET----SGGVENVLAEHINLYNVGVGIHVKTNIG-RGGFIRNIT 164 (280)
Q Consensus 90 ksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~----~g~i~nI~~~n~~i~~~~~gi~Iks~~g-~~g~v~nV~ 164 (280)
|++ ++||+|+||+|.. +|||+|||++ .+.|+||+|+||+|.++.+|++||+|.+ ++|.|+||+
T Consensus 223 k~g-----------s~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~ 290 (394)
T PLN02155 223 GPG-----------TRNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVF 290 (394)
T ss_pred CCC-----------CceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEE
Confidence 985 7999999999976 7999999973 5789999999999999999999999864 689999999
Q ss_pred EEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccC-eeEEEEecCCCCeecEEEEeEEEEeeCCCC
Q 023585 165 VSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPT 243 (280)
Q Consensus 165 f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~-~~~~i~g~~~~~i~~i~~~Nv~i~~~~~~~ 243 (280)
|+||+|+++.+||.|++.|.........+...+.|+||+|+||+++... .++.|.|.++.||+||+|+||+++...+.
T Consensus 291 f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~- 369 (394)
T PLN02155 291 FQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGT- 369 (394)
T ss_pred EEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCC-
Confidence 9999999999999999998643221111122358999999999999764 57899999999999999999999998544
Q ss_pred CCCeEeeeeecCcccc-cCcCCCC
Q 023585 244 SPPLKCSDVSGSAYQV-KPWPCSE 266 (280)
Q Consensus 244 ~~~~~c~~~~~~~~~~-~p~~c~~ 266 (280)
+..+.|.++.|....+ .|.+|++
T Consensus 370 ~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 370 PATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred ccCcEEeccEeEEcccCCcccccC
Confidence 4579999999998776 5668965
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=6.9e-50 Score=372.46 Aligned_cols=241 Identities=27% Similarity=0.389 Sum_probs=214.2
Q ss_pred eEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecCC
Q 023585 14 LIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGW 93 (280)
Q Consensus 14 ~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~ 93 (280)
+++|.+|+|++|+||+++|||+|++++..|++|+|+|++|.++...+|+||||+.+|+||+|+||+|.+|||||++|++
T Consensus 159 ~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg- 237 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG- 237 (409)
T ss_pred eEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC-
Confidence 6899999999999999999999999999999999999999998778999999999999999999999999999999996
Q ss_pred CccCcccCCCeecEEEEeEEEeCCCceEEEcceecC----CEEeEEEEeeEEEeeCcEEEEEEEcCCCceEEEEEEEeEE
Q 023585 94 DEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSG----GVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVY 169 (280)
Q Consensus 94 ~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g----~i~nI~~~n~~i~~~~~gi~Iks~~g~~g~v~nV~f~ni~ 169 (280)
++|+.|+++.|.. +|||+|||++.+ .|+||+|+||+|.++.+|++||++.|++|.|+||+|+||+
T Consensus 238 ----------s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~ 306 (409)
T PLN03010 238 ----------SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENIT 306 (409)
T ss_pred ----------CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEE
Confidence 6789999999965 799999999654 4999999999999999999999999888999999999999
Q ss_pred EcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccC-eeEEEEecCCCCeecEEEEeEEEEeeCCCCCCCeE
Q 023585 170 MENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLK 248 (280)
Q Consensus 170 ~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~-~~~~i~g~~~~~i~~i~~~Nv~i~~~~~~~~~~~~ 248 (280)
|+++++||.|++.|.........+.....|+||+|+||+++... .++.|.|.+..||+||+|+||+++.+.+. ++.+.
T Consensus 307 m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~-~~~~~ 385 (409)
T PLN03010 307 LINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGE-KPKVE 385 (409)
T ss_pred EecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCC-ccceE
Confidence 99999999999999753221111223458999999999998654 67899999999999999999999988655 46799
Q ss_pred eeeeecCccc-ccCcCCCCC
Q 023585 249 CSDVSGSAYQ-VKPWPCSEL 267 (280)
Q Consensus 249 c~~~~~~~~~-~~p~~c~~~ 267 (280)
|.++.+.... ..|.+|++.
T Consensus 386 C~nv~g~~~~~~~~~~C~~~ 405 (409)
T PLN03010 386 CQNVEGESSDTDLMRDCFKN 405 (409)
T ss_pred eeCccccccCCCCCCccccc
Confidence 9999998754 556689974
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.6e-49 Score=363.89 Aligned_cols=238 Identities=39% Similarity=0.621 Sum_probs=208.8
Q ss_pred CcccC----CCCCCCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEE
Q 023585 1 MWRQR----TLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIE 76 (280)
Q Consensus 1 ~~~~~----~~~~~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~ 76 (280)
||... .....||++|+|.+|++++|+|++++|||+|++++..|+||+|++++|.++...+|+||||+.+|+||+|+
T Consensus 77 w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~ 156 (326)
T PF00295_consen 77 WWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIE 156 (326)
T ss_dssp TCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEE
T ss_pred hhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEE
Confidence 77663 34578999999999999999999999999999999999999999999999877899999999999999999
Q ss_pred eeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecC----CEEeEEEEeeEEEeeCcEEEEEE
Q 023585 77 DSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSG----GVENVLAEHINLYNVGVGIHVKT 152 (280)
Q Consensus 77 n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g----~i~nI~~~n~~i~~~~~gi~Iks 152 (280)
||+|+++||||++|++ ..||+|+||+|.+ +||++|||++.+ .|+||+|+||+|.++.+|++||+
T Consensus 157 n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~-ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt 224 (326)
T PF00295_consen 157 NCFIDNGDDCIAIKSG-----------SGNILVENCTCSG-GHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKT 224 (326)
T ss_dssp SEEEESSSESEEESSE-----------ECEEEEESEEEES-SSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEE
T ss_pred EeecccccCccccccc-----------ccceEEEeEEEec-cccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEE
Confidence 9999999999999995 5599999999987 799999999765 59999999999999999999999
Q ss_pred EcCCCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccC-eeEEEEecCCCCeecEEE
Q 023585 153 NIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICL 231 (280)
Q Consensus 153 ~~g~~g~v~nV~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~-~~~~i~g~~~~~i~~i~~ 231 (280)
+++++|.|+||+|+||+|+++.+||.|++.|....... .|...+.|+||+|+||+++... .++.|.|.++.||+||+|
T Consensus 225 ~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~-~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f 303 (326)
T PF00295_consen 225 WPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCG-KPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITF 303 (326)
T ss_dssp ETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESS-CSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEE
T ss_pred ecccceEEeceEEEEEEecCCceEEEEEeccccccccC-cccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEE
Confidence 99889999999999999999999999999887521111 1223458999999999999876 788999999999999999
Q ss_pred EeEEEEeeCCCCCCCeEeeeeecC
Q 023585 232 SNINLQGVAGPTSPPLKCSDVSGS 255 (280)
Q Consensus 232 ~Nv~i~~~~~~~~~~~~c~~~~~~ 255 (280)
+||++++ + +.++.|.+++..
T Consensus 304 ~nv~i~~-g---~~~~~c~nv~~~ 323 (326)
T PF00295_consen 304 ENVNITG-G---KKPAQCKNVPSG 323 (326)
T ss_dssp EEEEEES-S---BSESEEBSCCTT
T ss_pred EeEEEEc-C---CcCeEEECCCCC
Confidence 9999998 2 346888888754
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.4e-32 Score=257.06 Aligned_cols=169 Identities=41% Similarity=0.618 Sum_probs=157.8
Q ss_pred CCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEE
Q 023585 10 TRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAV 89 (280)
Q Consensus 10 ~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iai 89 (280)
.||.++.|..|+||+++|+++.|+|.|++|+..|+|++++|++|.+.... |+||||+.+|+||+|++|+|.++||||++
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~i 314 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAI 314 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEEe
Confidence 69999999999999999999999999999999999999999999997543 99999999999999999999999999999
Q ss_pred ecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcCCCceEEEEEEEeEE
Q 023585 90 KSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVY 169 (280)
Q Consensus 90 ksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g~~g~v~nV~f~ni~ 169 (280)
|++...++.+...+++||+|+||++..+..++++|||+.++++||++|||.|.++.+||+||+..+++|.++||+|++++
T Consensus 315 ksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI~~~~~~ 394 (542)
T COG5434 315 KSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNK 394 (542)
T ss_pred ecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEEEEEeccc
Confidence 99988776666779999999999999877789999999999999999999999999999999999899999999999999
Q ss_pred EcccCeeEEE
Q 023585 170 MENARKGIKI 179 (280)
Q Consensus 170 ~~~~~~~i~i 179 (280)
|.++..+..|
T Consensus 395 ~~nv~t~~~i 404 (542)
T COG5434 395 MRNVKTKLSI 404 (542)
T ss_pred ccCcccceee
Confidence 9998544333
No 9
>PLN03010 polygalacturonase
Probab=99.91 E-value=2.4e-22 Score=187.82 Aligned_cols=203 Identities=18% Similarity=0.212 Sum_probs=165.2
Q ss_pred eeEEEEeeecEEEEeEEEecCC---Cc-EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEE
Q 023585 13 NLIEFMNSRSIIISNVIFQNSP---FW-NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVA 88 (280)
Q Consensus 13 ~~i~~~~~~nv~I~gi~i~ns~---~~-~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~ia 88 (280)
.++.|.+.+|+.|.|--.++.. .| .+.+..|+|++|+++++.+++. ..+++..|++|+|+++.|.+..
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~----~~i~i~~~~nv~i~~i~I~a~~---- 202 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPK----NHISIKTCNYVAISKINILAPE---- 202 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCc----eEEEEeccccEEEEEEEEeCCC----
Confidence 4688999999999998777753 45 5999999999999999999873 2388889999999999998853
Q ss_pred EecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcC--CCceEEEEEEE
Q 023585 89 VKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIG--RGGFIRNITVS 166 (280)
Q Consensus 89 iksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g--~~g~v~nV~f~ 166 (280)
...++||+++. .++||+|+||++.++++||+|++. -.|+.|+++.+.. .+||.|+|... ....|+||+|+
T Consensus 203 --~s~NTDGiDi~-~s~nV~I~n~~I~~gDDcIaiksg----s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~ 274 (409)
T PLN03010 203 --TSPNTDGIDIS-YSTNINIFDSTIQTGDDCIAINSG----SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVT 274 (409)
T ss_pred --CCCCCCceeee-ccceEEEEeeEEecCCCeEEecCC----CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEE
Confidence 23577888764 489999999999999999999985 3578888888865 48999999732 23569999999
Q ss_pred eEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEe---cC---------CCCeecEEEEeE
Q 023585 167 DVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQG---LK---------NSPFTGICLSNI 234 (280)
Q Consensus 167 ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~~~~~i~g---~~---------~~~i~~i~~~Nv 234 (280)
|+++.+..++++|+...+ +.+.++||+|+||++.....|+.|.- .. ...++||+|+||
T Consensus 275 n~~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni 344 (409)
T PLN03010 275 HCTFNQTTNGARIKTWQG----------GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGF 344 (409)
T ss_pred eeEEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEee
Confidence 999999999999997421 23589999999999999888887632 11 125899999999
Q ss_pred EEEeeCC
Q 023585 235 NLQGVAG 241 (280)
Q Consensus 235 ~i~~~~~ 241 (280)
+.+....
T Consensus 345 ~GT~~~~ 351 (409)
T PLN03010 345 RGTTSNE 351 (409)
T ss_pred EEEeCCC
Confidence 9986543
No 10
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.91 E-value=2e-22 Score=189.70 Aligned_cols=202 Identities=18% Similarity=0.197 Sum_probs=166.2
Q ss_pred eeEEEEeeecEEEEeEEEecCC---Cc--------EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEE
Q 023585 13 NLIEFMNSRSIIISNVIFQNSP---FW--------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIS 81 (280)
Q Consensus 13 ~~i~~~~~~nv~I~gi~i~ns~---~~--------~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~ 81 (280)
.+|.|.+++++.|.|--.++.. .| .+.+..|+|++|+++++.+++. ..+++..|+||+|+++.|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 4799999999999997666643 24 5899999999999999999873 3488889999999999999
Q ss_pred cCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcC--CCce
Q 023585 82 TGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIG--RGGF 159 (280)
Q Consensus 82 ~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g--~~g~ 159 (280)
+..+ ..++||+++. .++||+|+||++.++|+||+|++. .+||+|+||++.. .+||.|+|... ..+.
T Consensus 181 ap~~------spNTDGIDi~-~S~nV~I~n~~I~tGDDCIaiksg----s~NI~I~n~~c~~-GHGISIGSlg~~g~~~~ 248 (456)
T PLN03003 181 APES------SPNTDGIDVG-ASSNVVIQDCIIATGDDCIAINSG----TSNIHISGIDCGP-GHGISIGSLGKDGETAT 248 (456)
T ss_pred CCCC------CCCCCcEeec-CcceEEEEecEEecCCCeEEeCCC----CccEEEEeeEEEC-CCCeEEeeccCCCCcce
Confidence 8532 3577888775 589999999999999999999974 5899999999965 58999999742 2357
Q ss_pred EEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEecC--------------CCC
Q 023585 160 IRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLK--------------NSP 225 (280)
Q Consensus 160 v~nV~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~~~~~i~g~~--------------~~~ 225 (280)
|+||+++|+++.+..++++|+... .+.+.++||+|+||.+.+...|+.|.... ...
T Consensus 249 V~NV~v~n~~~~~T~nGvRIKT~~----------Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~ 318 (456)
T PLN03003 249 VENVCVQNCNFRGTMNGARIKTWQ----------GGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVE 318 (456)
T ss_pred EEEEEEEeeEEECCCcEEEEEEeC----------CCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcE
Confidence 999999999999999999999742 12358999999999999988888773211 125
Q ss_pred eecEEEEeEEEEeeC
Q 023585 226 FTGICLSNINLQGVA 240 (280)
Q Consensus 226 i~~i~~~Nv~i~~~~ 240 (280)
++||+|+||+.+...
T Consensus 319 IsnI~f~NI~GTs~~ 333 (456)
T PLN03003 319 VSKVVFSNFIGTSKS 333 (456)
T ss_pred EEeEEEEeEEEEeCc
Confidence 899999999987653
No 11
>PLN02218 polygalacturonase ADPG
Probab=99.91 E-value=1.9e-22 Score=189.92 Aligned_cols=202 Identities=14% Similarity=0.182 Sum_probs=162.7
Q ss_pred eeEEEEeeecEEEEeE--EEecCCC---c-----------------EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCC
Q 023585 13 NLIEFMNSRSIIISNV--IFQNSPF---W-----------------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSS 70 (280)
Q Consensus 13 ~~i~~~~~~nv~I~gi--~i~ns~~---~-----------------~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s 70 (280)
.+|.|.+.+|+.|.|- -.+|... | .+.+..|+|++|+++++.+++. ..+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEce
Confidence 4688999999999983 3333221 2 4788999999999999999873 34888899
Q ss_pred ccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEE
Q 023585 71 SNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHV 150 (280)
Q Consensus 71 ~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~I 150 (280)
+||+|+|+.|.+..|. .++||+++. .++||+|+||++.++|++|+|+++ .+||+|+||++.. .+|+.|
T Consensus 224 ~nV~i~~v~I~a~~~s------pNTDGIdi~-ss~nV~I~n~~I~tGDDcIaIksg----s~nI~I~n~~c~~-GHGisI 291 (431)
T PLN02218 224 SNVQVSNVVVTAPADS------PNTDGIHIT-NTQNIRVSNSIIGTGDDCISIESG----SQNVQINDITCGP-GHGISI 291 (431)
T ss_pred eeEEEEEEEEeCCCCC------CCCCcEeec-ccceEEEEccEEecCCceEEecCC----CceEEEEeEEEEC-CCCEEE
Confidence 9999999999874322 467777764 489999999999999999999974 5899999999965 589999
Q ss_pred EEEcCC--CceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEecC------
Q 023585 151 KTNIGR--GGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLK------ 222 (280)
Q Consensus 151 ks~~g~--~g~v~nV~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~~~~~i~g~~------ 222 (280)
+|.... .+.|+||+++|+++.+..++++|+... .+.+.++||+|+||++.....|+.|....
T Consensus 292 GS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~----------Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~ 361 (431)
T PLN02218 292 GSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ----------GGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKC 361 (431)
T ss_pred CcCCCCCCCceEEEEEEEccEEecCCcceEEeecC----------CCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCC
Confidence 997422 468999999999999999999999742 23468999999999999988887764221
Q ss_pred -----CCCeecEEEEeEEEEeeC
Q 023585 223 -----NSPFTGICLSNINLQGVA 240 (280)
Q Consensus 223 -----~~~i~~i~~~Nv~i~~~~ 240 (280)
...++||+|+||+.+.+.
T Consensus 362 ~~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 362 TSQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred CCCCCCeEEEEEEEEeEEEEecC
Confidence 124899999999998753
No 12
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.91 E-value=3.4e-22 Score=183.39 Aligned_cols=203 Identities=24% Similarity=0.224 Sum_probs=159.8
Q ss_pred CeeEEEEeeecEEEEeEEEecCC---C---------------cEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccE
Q 023585 12 PNLIEFMNSRSIIISNVIFQNSP---F---------------WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNV 73 (280)
Q Consensus 12 P~~i~~~~~~nv~I~gi~i~ns~---~---------------~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV 73 (280)
-.+|.+.+++++.|.|-...+.. + ..+.+..|++++|+++++.+++. | .+.+..|+||
T Consensus 51 ~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~-w---~~~~~~~~nv 126 (326)
T PF00295_consen 51 SALIYAENAENITITGKGTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPF-W---HIHINDCDNV 126 (326)
T ss_dssp SEEEEEESEEEEECTTSSEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SS-E---SEEEESEEEE
T ss_pred cEEEEEEceEEEEecCCceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCe-e---EEEEEccCCe
Confidence 45799999999999984443321 1 23899999999999999999873 3 3788889999
Q ss_pred EEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEE
Q 023585 74 CIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTN 153 (280)
Q Consensus 74 ~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~ 153 (280)
+|+++.|.+..+. .++||+++. .++||+|+||++.+++++|+|++... ||+++||++.+ .+|+.|++.
T Consensus 127 ~i~~i~I~~~~~~------~NtDGid~~-~s~nv~I~n~~i~~gDD~Iaiks~~~----ni~v~n~~~~~-ghGisiGS~ 194 (326)
T PF00295_consen 127 TISNITINNPANS------PNTDGIDID-SSKNVTIENCFIDNGDDCIAIKSGSG----NILVENCTCSG-GHGISIGSE 194 (326)
T ss_dssp EEESEEEEEGGGC------TS--SEEEE-SEEEEEEESEEEESSSESEEESSEEC----EEEEESEEEES-SSEEEEEEE
T ss_pred EEcceEEEecCCC------CCcceEEEE-eeeEEEEEEeecccccCccccccccc----ceEEEeEEEec-cccceeeec
Confidence 9999999875322 355666554 48999999999999999999998643 99999999976 489999997
Q ss_pred cCCC--ceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEe---c------C
Q 023585 154 IGRG--GFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQG---L------K 222 (280)
Q Consensus 154 ~g~~--g~v~nV~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~~~~~i~g---~------~ 222 (280)
...+ ..|+||+|+|+++.+..+++.|+... .+.+.++||+|+||+++....|+.|.- . +
T Consensus 195 ~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~----------~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~ 264 (326)
T PF00295_consen 195 GSGGSQNDIRNVTFENCTIINTDNGIRIKTWP----------GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKP 264 (326)
T ss_dssp SSSSE--EEEEEEEEEEEEESESEEEEEEEET----------TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCS
T ss_pred cCCccccEEEeEEEEEEEeeccceEEEEEEec----------ccceEEeceEEEEEEecCCceEEEEEeccccccccCcc
Confidence 4321 36999999999999999999999731 234689999999999999888877642 1 1
Q ss_pred --CCCeecEEEEeEEEEeeC
Q 023585 223 --NSPFTGICLSNINLQGVA 240 (280)
Q Consensus 223 --~~~i~~i~~~Nv~i~~~~ 240 (280)
...++||+|+||+.+...
T Consensus 265 ~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 265 PSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp SSSSEEEEEEEEEEEEEEST
T ss_pred cCCceEEEEEEEeeEEEecc
Confidence 135999999999999876
No 13
>PLN02793 Probable polygalacturonase
Probab=99.90 E-value=7.1e-22 Score=186.88 Aligned_cols=201 Identities=15% Similarity=0.170 Sum_probs=163.1
Q ss_pred eeEEEEeeecEEEEeEEEecCCC---c-----------------EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCcc
Q 023585 13 NLIEFMNSRSIIISNVIFQNSPF---W-----------------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSN 72 (280)
Q Consensus 13 ~~i~~~~~~nv~I~gi~i~ns~~---~-----------------~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~n 72 (280)
.+|.+.+.+|+.|.|--.++... | .+.+..|+|++|+++++.+++. ..+.+..|+|
T Consensus 135 ~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~----~~i~~~~~~n 210 (443)
T PLN02793 135 KWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQ----MHIAFTNCRR 210 (443)
T ss_pred eEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCC----eEEEEEccCc
Confidence 37889999999999976655321 2 4788899999999999999873 2378889999
Q ss_pred EEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEE
Q 023585 73 VCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKT 152 (280)
Q Consensus 73 V~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks 152 (280)
|+|+++.|.+..+ ..++||+++. .++||+|+||++.+++++|+|++ +.+||+|+||++... +||.|+|
T Consensus 211 v~i~~l~I~~p~~------spNTDGIdi~-~s~nV~I~n~~I~~gDDcIaik~----~s~nI~I~n~~c~~G-hGisIGS 278 (443)
T PLN02793 211 VTISGLKVIAPAT------SPNTDGIHIS-ASRGVVIKDSIVRTGDDCISIVG----NSSRIKIRNIACGPG-HGISIGS 278 (443)
T ss_pred EEEEEEEEECCCC------CCCCCcEeee-ccceEEEEeCEEeCCCCeEEecC----CcCCEEEEEeEEeCC-ccEEEec
Confidence 9999999988542 2467777664 58999999999999999999986 358999999999665 8999999
Q ss_pred EcC--CCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEecC---C----
Q 023585 153 NIG--RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLK---N---- 223 (280)
Q Consensus 153 ~~g--~~g~v~nV~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~~~~~i~g~~---~---- 223 (280)
... ..+.|+||+|+|+++.+..++++|+... .+.+.++||+|+||.+.....|+.|...+ .
T Consensus 279 lg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~----------g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~ 348 (443)
T PLN02793 279 LGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQ----------GGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCA 348 (443)
T ss_pred ccCcCCCCcEEEEEEEccEEeCCCceEEEEEeC----------CCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCC
Confidence 732 2467999999999999999999999742 12358999999999999988888774311 1
Q ss_pred -----CCeecEEEEeEEEEee
Q 023585 224 -----SPFTGICLSNINLQGV 239 (280)
Q Consensus 224 -----~~i~~i~~~Nv~i~~~ 239 (280)
..++||+|+||+.+..
T Consensus 349 ~~ts~v~I~nI~~~nI~Gt~~ 369 (443)
T PLN02793 349 NQTSAVKVENISFVHIKGTSA 369 (443)
T ss_pred CCCCCeEEEeEEEEEEEEEEc
Confidence 2488999999998874
No 14
>PLN02155 polygalacturonase
Probab=99.90 E-value=3.2e-21 Score=179.77 Aligned_cols=202 Identities=16% Similarity=0.209 Sum_probs=163.9
Q ss_pred eeEEEEeeecEEEEeEEEecCC---Cc--------------EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEE
Q 023585 13 NLIEFMNSRSIIISNVIFQNSP---FW--------------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCI 75 (280)
Q Consensus 13 ~~i~~~~~~nv~I~gi~i~ns~---~~--------------~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I 75 (280)
.++.|.+.+++.|.| -..+.. .| .+.+..|++++|+++++.+++. .-+++..|+||+|
T Consensus 107 ~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~----w~i~~~~~~nv~i 181 (394)
T PLN02155 107 YWILFNKVNRFSLVG-GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQV----SHMTLNGCTNVVV 181 (394)
T ss_pred eeEEEECcCCCEEEc-cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCC----eEEEEECeeeEEE
Confidence 478999999999999 554432 12 3789999999999999999873 2388889999999
Q ss_pred EeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcC
Q 023585 76 EDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIG 155 (280)
Q Consensus 76 ~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g 155 (280)
+++.|.+..+ ..++||+++. .++||+|+||++.+++++|+|++. .+||+|+|+++.. .+|+.|+|...
T Consensus 182 ~~v~I~~p~~------~~NtDGidi~-~s~nV~I~~~~I~~gDDcIaik~g----s~nI~I~n~~c~~-GhGisIGS~g~ 249 (394)
T PLN02155 182 RNVKLVAPGN------SPNTDGFHVQ-FSTGVTFTGSTVQTGDDCVAIGPG----TRNFLITKLACGP-GHGVSIGSLAK 249 (394)
T ss_pred EEEEEECCCC------CCCCCccccc-cceeEEEEeeEEecCCceEEcCCC----CceEEEEEEEEEC-CceEEeccccc
Confidence 9999988532 3578888764 599999999999999999999874 5899999999976 48999999632
Q ss_pred --CCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEe---c-----C---
Q 023585 156 --RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQG---L-----K--- 222 (280)
Q Consensus 156 --~~g~v~nV~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~~~~~i~g---~-----~--- 222 (280)
..+.|+||+++|+++.+..++++|+.+.. .+.+.++||+|+||.+.....|+.|.. . +
T Consensus 250 ~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~---------~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~ 320 (394)
T PLN02155 250 ELNEDGVENVTVSSSVFTGSQNGVRIKSWAR---------PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEY 320 (394)
T ss_pred cCCCCcEEEEEEEeeEEeCCCcEEEEEEecC---------CCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCC
Confidence 25789999999999999999999997321 123589999999999999888877632 1 0
Q ss_pred -CCCeecEEEEeEEEEeeC
Q 023585 223 -NSPFTGICLSNINLQGVA 240 (280)
Q Consensus 223 -~~~i~~i~~~Nv~i~~~~ 240 (280)
...++||+|+||+.+...
T Consensus 321 s~v~i~~It~~ni~gt~~~ 339 (394)
T PLN02155 321 SGVKISQVTYKNIQGTSAT 339 (394)
T ss_pred CCeEEEEEEEEeeEEEecC
Confidence 125899999999998763
No 15
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.89 E-value=9e-21 Score=177.48 Aligned_cols=204 Identities=20% Similarity=0.194 Sum_probs=163.1
Q ss_pred eeEEEEeeecEEEEeEEEecCC---Cc----------------EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccE
Q 023585 13 NLIEFMNSRSIIISNVIFQNSP---FW----------------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNV 73 (280)
Q Consensus 13 ~~i~~~~~~nv~I~gi~i~ns~---~~----------------~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV 73 (280)
.++.|..++|+.|.|--.+|.. .| .+.+..|++++|+++++.+++. ..+++..|+||
T Consensus 114 ~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~----w~i~~~~~~~v 189 (404)
T PLN02188 114 DWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKF----FHIALVECRNF 189 (404)
T ss_pred ceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCC----eEEEEEccccE
Confidence 4678888999999997666533 23 3688899999999999999873 34888899999
Q ss_pred EEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEE
Q 023585 74 CIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTN 153 (280)
Q Consensus 74 ~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~ 153 (280)
+|+++.|.+..+ ..++||+++. .++||+|+||++.++++||+|++. .+||+|+|+++.. .+|+.|+|.
T Consensus 190 ~i~~v~I~~~~~------spNtDGidi~-~s~nV~I~n~~I~~GDDcIaiksg----~~nI~I~n~~c~~-ghGisiGSl 257 (404)
T PLN02188 190 KGSGLKISAPSD------SPNTDGIHIE-RSSGVYISDSRIGTGDDCISIGQG----NSQVTITRIRCGP-GHGISVGSL 257 (404)
T ss_pred EEEEEEEeCCCC------CCCCCcEeee-CcccEEEEeeEEeCCCcEEEEccC----CccEEEEEEEEcC-CCcEEeCCC
Confidence 999999987432 2467777664 589999999999999999999874 4799999999965 489999985
Q ss_pred c--CCCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEeccCeeEEEEe---c-------
Q 023585 154 I--GRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQG---L------- 221 (280)
Q Consensus 154 ~--g~~g~v~nV~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~~~~~i~g---~------- 221 (280)
. ...+.|+||+|+|+++.+..++++|+...+. + +.+.++||+|+||++.....|+.|.. .
T Consensus 258 G~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~-------~-~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~ 329 (404)
T PLN02188 258 GRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS-------P-GKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESK 329 (404)
T ss_pred CCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC-------C-CceEEEEEEEEeEEecCccceEEEEccccCCCCCCcC
Confidence 3 1246799999999999999999999974221 1 13589999999999999888887642 1
Q ss_pred --CCCCeecEEEEeEEEEeeC
Q 023585 222 --KNSPFTGICLSNINLQGVA 240 (280)
Q Consensus 222 --~~~~i~~i~~~Nv~i~~~~ 240 (280)
....++||+|+||+.+...
T Consensus 330 ~~s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 330 YPSGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred CCCCcEEEeEEEEEEEEEecC
Confidence 1135899999999998753
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.65 E-value=3.3e-14 Score=133.78 Aligned_cols=197 Identities=20% Similarity=0.220 Sum_probs=120.6
Q ss_pred eeEEE---EeeecEEEEeEEEecCCCcEEEeeeee----eEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCc
Q 023585 13 NLIEF---MNSRSIIISNVIFQNSPFWNIHPVYCS----NVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 85 (280)
Q Consensus 13 ~~i~~---~~~~nv~I~gi~i~ns~~~~i~~~~~~----nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD 85 (280)
+|+.+ ..+.++.++|++|.+||+|++.+.+-+ +..|+|+++.... .+|+|||.+. ++-+|+|||+++.||
T Consensus 318 km~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD 394 (582)
T PF03718_consen 318 KMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDD 394 (582)
T ss_dssp -SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE----CTT----B----TT-EEEEEEEEESS-
T ss_pred hhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE-EeccCCcccc--CCCeeeeeEEEecCc
Confidence 45653 445599999999999999999999544 5899999999864 7899999996 677889999999999
Q ss_pred eEEEecCCCccCcccCCCeecEEEEeEEEeCC--CceEEEcceecCCEEeEEEEeeEEEeeC---------cEEEEEEEc
Q 023585 86 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP--FSGIAVGSETSGGVENVLAEHINLYNVG---------VGIHVKTNI 154 (280)
Q Consensus 86 ~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~--~~gi~Igs~~~g~i~nI~~~n~~i~~~~---------~gi~Iks~~ 154 (280)
+|-+. -+++.|+||++|.. +..+.+|.. ...++||+|+|+.+.+.. .+|..-+..
T Consensus 395 ~iKlY-------------hS~v~v~~~ViWk~~Ngpiiq~GW~-pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~ 460 (582)
T PF03718_consen 395 AIKLY-------------HSNVSVSNTVIWKNENGPIIQWGWT-PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPF 460 (582)
T ss_dssp SEE---------------STTEEEEEEEEEE-SSS-SEE--CS----EEEEEEEEEEEEE---SSGGCTTT-ECEEE--B
T ss_pred hhhee-------------ecCcceeeeEEEecCCCCeEEeecc-ccccCceEEeeeEEEeeeeecccCCCCceeEecccc
Confidence 97443 37899999999975 344778764 457999999999999862 355444321
Q ss_pred C----C------CceEEEEEEEeEEEcccC-eeEEEEeeeCCCCCCCCCCCCCCeEEeEEEEEEEEecc-----C-eeEE
Q 023585 155 G----R------GGFIRNITVSDVYMENAR-KGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKV-----Q-QSGL 217 (280)
Q Consensus 155 g----~------~g~v~nV~f~ni~~~~~~-~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~-----~-~~~~ 217 (280)
. . .-.|++++|+|+++|+.- ..+.|.. +...+|+.++|+....= . ....
T Consensus 461 y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p--------------lqn~~nl~ikN~~~~~w~~~~~~~~~s~ 526 (582)
T PF03718_consen 461 YDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYP--------------LQNYDNLVIKNVHFESWNGLDITSQVSG 526 (582)
T ss_dssp TTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE----------------SEEEEEEEEEEEEECEET-CGCSTT-EE
T ss_pred cccccCCCCCCcccceeeEEEEeEEEecccceeEEEee--------------cCCCcceEEEEeecccccCcccccceee
Confidence 1 1 136899999999999863 4455542 23566777777766521 0 0111
Q ss_pred EE---ec---CCCCeecEEEEeEEEEeeC
Q 023585 218 IQ---GL---KNSPFTGICLSNINLQGVA 240 (280)
Q Consensus 218 i~---g~---~~~~i~~i~~~Nv~i~~~~ 240 (280)
+. +. ......+|.|+|.++.++.
T Consensus 527 ~k~~~~~~~~~~~~~~gi~i~N~tVgg~~ 555 (582)
T PF03718_consen 527 LKAYYNMANNKQNDTMGIIIENWTVGGEK 555 (582)
T ss_dssp E---CCTTT--B--EEEEEEEEEEETTEE
T ss_pred ccccccccccccccccceEEEeEEECCEE
Confidence 11 11 1235889999999998764
No 17
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=4.5e-14 Score=135.35 Aligned_cols=155 Identities=21% Similarity=0.242 Sum_probs=131.5
Q ss_pred CCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEE
Q 023585 34 PFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVT 113 (280)
Q Consensus 34 ~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~ 113 (280)
...++.+..|+||.+.+++|.+++. .++++..|+|++++|..|.+.++. ++||++.. .|+|++|++|+
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~-------NtDG~d~~-sc~NvlI~~~~ 304 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFD-------NTDGFDPG-SCSNVLIEGCR 304 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCC-------CCCccccc-cceeEEEeccE
Confidence 3457899999999999999999863 679999999999999999987542 45666553 69999999999
Q ss_pred EeCCCceEEEcceec-------CCEEeEEEEeeEEEeeCcEEEEEEEcCCCceEEEEEEEeEEEcccCeeEEEEeeeCCC
Q 023585 114 GSSPFSGIAVGSETS-------GGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDH 186 (280)
Q Consensus 114 ~~~~~~gi~Igs~~~-------g~i~nI~~~n~~i~~~~~gi~Iks~~g~~g~v~nV~f~ni~~~~~~~~i~i~~~y~~~ 186 (280)
|..+++++.|+|... +.-+||.|+||.|.....++.++++. +|.|+||++||+.|.+..++++|+....
T Consensus 305 fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~-- 380 (542)
T COG5434 305 FDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDG-- 380 (542)
T ss_pred EecCCceEEeecccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeecc--
Confidence 999999999998742 34699999999999887788888884 6889999999999999999999997532
Q ss_pred CCCCCCCCCCCeEEeEEEEEEEEecc
Q 023585 187 PDDKFNPNALPVVNGITIKDVWGTKV 212 (280)
Q Consensus 187 ~~~~~~~~~~~~i~nIt~~NI~~~~~ 212 (280)
+.+.++||+|+++.....
T Consensus 381 --------~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 --------RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred --------cceeEEEEEEecccccCc
Confidence 236899999999988765
No 18
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=99.20 E-value=7.2e-11 Score=102.55 Aligned_cols=134 Identities=14% Similarity=0.188 Sum_probs=98.0
Q ss_pred CCCCCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCC-----CeeeC------CCCccEEE
Q 023585 7 LPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNT-----DGIDP------DSSSNVCI 75 (280)
Q Consensus 7 ~~~~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~nt-----DGid~------~~s~nV~I 75 (280)
.....|.++ ++|++++++++++-|++- .+..|++|+++|+.+.+...++++ ||+.+ ..++||.|
T Consensus 86 ~~i~apK~f--R~~~~i~L~nv~~~~A~E---t~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei 160 (277)
T PF12541_consen 86 SVIQAPKMF--RECSNITLENVDIPDADE---TLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEI 160 (277)
T ss_pred eeccCchHh--hcccCcEEEeeEeCCCcc---cCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEE
Confidence 334567654 899999999999999886 345778888888888553323332 23322 45899999
Q ss_pred EeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcC
Q 023585 76 EDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIG 155 (280)
Q Consensus 76 ~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g 155 (280)
+|+.+.+.| +-| .++||+|.|+++.|. -+|. ..+|+++.||++.+.+ ||
T Consensus 161 ~ns~l~sKD------AFW---------n~eNVtVyDS~i~GE----YLgW----~SkNltliNC~I~g~Q-pL------- 209 (277)
T PF12541_consen 161 HNSKLDSKD------AFW---------NCENVTVYDSVINGE----YLGW----NSKNLTLINCTIEGTQ-PL------- 209 (277)
T ss_pred EccEEeccc------ccc---------cCCceEEEcceEeee----EEEE----EcCCeEEEEeEEeccC-cc-------
Confidence 999998875 233 389999999999652 2222 3599999999998873 54
Q ss_pred CCceEEEEEEEeEEEcccCeeEE
Q 023585 156 RGGFIRNITVSDVYMENARKGIK 178 (280)
Q Consensus 156 ~~g~v~nV~f~ni~~~~~~~~i~ 178 (280)
.+++|++++|++|.+.+.++.
T Consensus 210 --CY~~~L~l~nC~~~~tdlaFE 230 (277)
T PF12541_consen 210 --CYCDNLVLENCTMIDTDLAFE 230 (277)
T ss_pred --EeecceEEeCcEeecceeeee
Confidence 678999999999998776643
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.01 E-value=1.5e-08 Score=92.76 Aligned_cols=139 Identities=23% Similarity=0.222 Sum_probs=108.0
Q ss_pred EEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCC---CCCCCeeeCCCCccEEEEeeEEEcCCc-eEEEecC
Q 023585 17 FMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPAD---SPNTDGIDPDSSSNVCIEDSYISTGDD-LVAVKSG 92 (280)
Q Consensus 17 ~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~---~~ntDGid~~~s~nV~I~n~~i~~gDD-~iaiksg 92 (280)
+..+++++|+|+++.+++.++|.+..|++++|+++++..... ....+||.+..|++++|++|+++...| +|.++.
T Consensus 59 ~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~- 137 (314)
T TIGR03805 59 LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ- 137 (314)
T ss_pred EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-
Confidence 346999999999999999999999999999999999974321 123579999999999999999987544 777654
Q ss_pred CCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcCCC-ceEEEEEEEeEEEc
Q 023585 93 WDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRG-GFIRNITVSDVYME 171 (280)
Q Consensus 93 ~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g~~-g~v~nV~f~ni~~~ 171 (280)
+++++|+|++++....||.+- ...++.+++..+.+...|+.+-..++.. ..-+++++++-++.
T Consensus 138 -----------s~~~~v~nN~~~~n~~GI~i~-----~S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~ 201 (314)
T TIGR03805 138 -----------SQNIVVRNNVAEENVAGIEIE-----NSQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIF 201 (314)
T ss_pred -----------CCCeEEECCEEccCcceEEEE-----ecCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEE
Confidence 789999999998877788774 2477888898888877899887654321 22356666655554
Q ss_pred c
Q 023585 172 N 172 (280)
Q Consensus 172 ~ 172 (280)
+
T Consensus 202 ~ 202 (314)
T TIGR03805 202 D 202 (314)
T ss_pred C
Confidence 3
No 20
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.74 E-value=3.2e-07 Score=87.15 Aligned_cols=196 Identities=14% Similarity=0.134 Sum_probs=113.5
Q ss_pred EeeecEEEEeEEEecCC----------------------------CcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCC
Q 023585 18 MNSRSIIISNVIFQNSP----------------------------FWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDS 69 (280)
Q Consensus 18 ~~~~nv~I~gi~i~ns~----------------------------~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~ 69 (280)
..+.|++|-|-.++... .|++....++++++++++|..++. + .+++.+
T Consensus 275 ~~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~--~--Sm~l~g 350 (582)
T PF03718_consen 275 DTQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPF--H--SMDLYG 350 (582)
T ss_dssp --SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-----SEEEES
T ss_pred cCCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCc--c--eEEecC
Confidence 47888888887665322 244556778999999999999873 2 367654
Q ss_pred Cc----cEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeC
Q 023585 70 SS----NVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVG 145 (280)
Q Consensus 70 s~----nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~ 145 (280)
.+ +..|+|..+.-. =.+++||+.+ .+|-+|+||.++..+++|++- -+++.++|+++....
T Consensus 351 ~~~~~~~~~i~nyKqVGa-------W~~qtDGi~l---y~nS~i~dcF~h~nDD~iKlY------hS~v~v~~~ViWk~~ 414 (582)
T PF03718_consen 351 NENDKFSMNISNYKQVGA-------WYFQTDGIEL---YPNSTIRDCFIHVNDDAIKLY------HSNVSVSNTVIWKNE 414 (582)
T ss_dssp SSGGGEEEEEEEEEEE----------CTT----B-----TT-EEEEEEEEESS-SEE--------STTEEEEEEEEEE-S
T ss_pred Cccccccceeeceeeeee-------EEeccCCccc---cCCCeeeeeEEEecCchhhee------ecCcceeeeEEEecC
Confidence 33 478888887531 1245666644 678899999999999999884 389999999999877
Q ss_pred cEEEEEEEcCCCceEEEEEEEeEEEcccC---------eeEEEEe-eeCCCCCC-CCCCCCCCeEEeEEEEEEEEeccC-
Q 023585 146 VGIHVKTNIGRGGFIRNITVSDVYMENAR---------KGIKIAG-DVGDHPDD-KFNPNALPVVNGITIKDVWGTKVQ- 213 (280)
Q Consensus 146 ~gi~Iks~~g~~g~v~nV~f~ni~~~~~~---------~~i~i~~-~y~~~~~~-~~~~~~~~~i~nIt~~NI~~~~~~- 213 (280)
+|--|..-. ....++||+|+|+.+...+ .+|+-.. .|...... .-+|+ -.||+++|+||++.+.-
T Consensus 415 Ngpiiq~GW-~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~--~ti~~~~~~nv~~EG~~~ 491 (582)
T PF03718_consen 415 NGPIIQWGW-TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPS--TTIRNMTFSNVRCEGMCP 491 (582)
T ss_dssp SS-SEE--C-S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEE--EEEEEEEEEEEEEECCE-
T ss_pred CCCeEEeec-cccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcc--cceeeEEEEeEEEecccc
Confidence 664454311 2467999999999997552 2344332 34221111 11122 27999999999999853
Q ss_pred eeEEEEecCCCCeecEEEEeEEEEe
Q 023585 214 QSGLIQGLKNSPFTGICLSNINLQG 238 (280)
Q Consensus 214 ~~~~i~g~~~~~i~~i~~~Nv~i~~ 238 (280)
..+.|. |-..-+|+.++|+.+..
T Consensus 492 ~l~ri~--plqn~~nl~ikN~~~~~ 514 (582)
T PF03718_consen 492 CLFRIY--PLQNYDNLVIKNVHFES 514 (582)
T ss_dssp ECEEE----SEEEEEEEEEEEEECE
T ss_pred eeEEEe--ecCCCcceEEEEeeccc
Confidence 233443 33456678888888873
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.67 E-value=1.8e-06 Score=79.05 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=113.8
Q ss_pred eeEEEEeeecEEEEeEEEec-------CCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCc
Q 023585 13 NLIEFMNSRSIIISNVIFQN-------SPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 85 (280)
Q Consensus 13 ~~i~~~~~~nv~I~gi~i~n-------s~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD 85 (280)
..|.+..|++++|+++++.. ...++|.+..|++++|++.++....+ +||-+..|++++|+++.+.....
T Consensus 78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d----~GIyv~~s~~~~v~nN~~~~n~~ 153 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASD----AGIYVGQSQNIVVRNNVAEENVA 153 (314)
T ss_pred CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCc----ccEEECCCCCeEEECCEEccCcc
Confidence 36788999999999999961 34689999999999999999988542 59999999999999999998877
Q ss_pred eEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceec---CCEEeEEEEeeEEEeeCc------EEEEEEEcCC
Q 023585 86 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETS---GGVENVLAEHINLYNVGV------GIHVKTNIGR 156 (280)
Q Consensus 86 ~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~---g~i~nI~~~n~~i~~~~~------gi~Iks~~g~ 156 (280)
+|-+.. +.++.|++.++.....|+.+-+... ...++++|++..+.+... |-.+...+..
T Consensus 154 GI~i~~------------S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g 221 (314)
T TIGR03805 154 GIEIEN------------SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAG 221 (314)
T ss_pred eEEEEe------------cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCC
Confidence 877653 6889999999988778888844322 245899999999886421 1111111222
Q ss_pred CceE----EEEEEEeEEEcccC-eeEEEE
Q 023585 157 GGFI----RNITVSDVYMENAR-KGIKIA 180 (280)
Q Consensus 157 ~g~v----~nV~f~ni~~~~~~-~~i~i~ 180 (280)
.|.+ +++.|+|-++++.. .++.+.
T Consensus 222 ~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 222 TGVVVMANRDVEIFGNVISNNDTANVLIS 250 (314)
T ss_pred cEEEEEcccceEEECCEEeCCcceeEEEE
Confidence 2433 78888888888775 455554
No 22
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.61 E-value=4.1e-07 Score=73.45 Aligned_cols=139 Identities=29% Similarity=0.288 Sum_probs=96.5
Q ss_pred EEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecCCC
Q 023585 15 IEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWD 94 (280)
Q Consensus 15 i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~ 94 (280)
|.+....+++|++.+|.+...+++++..+..++|++++|... ..|+.+....++.+++|.+.....++.+.
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~~-----~~gi~~~~~~~~~i~~~~~~~~~~~i~~~---- 73 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISNG-----GYGIYVSGGSNVTISNNTISDNGSGIYVS---- 73 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEESS-----TTSEEEECCES-EEES-EEES-SEEEECC----
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEECC-----CcEEEEecCCCeEEECeEEEEccceEEEE----
Confidence 677888899999999999999999999999999999999992 36899888899999999998776343332
Q ss_pred ccCcccCCCeecEEEEeEEEeCCCc-eEEEcceecCCEEeEEEEeeEEEeeC-cEEEEEEEcCCCceEEEEEEEeEEEcc
Q 023585 95 EYGIAYGHPSSGITIRRVTGSSPFS-GIAVGSETSGGVENVLAEHINLYNVG-VGIHVKTNIGRGGFIRNITVSDVYMEN 172 (280)
Q Consensus 95 ~~g~~~~~~~~nI~I~n~~~~~~~~-gi~Igs~~~g~i~nI~~~n~~i~~~~-~gi~Iks~~g~~g~v~nV~f~ni~~~~ 172 (280)
...+++|++|.+....+ ||.+.. ...+++|+++++.+.. .|+.+.... -.++++++.++.+
T Consensus 74 --------~~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~ 136 (158)
T PF13229_consen 74 --------GSSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISN 136 (158)
T ss_dssp --------S-CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEEC
T ss_pred --------ecCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEe
Confidence 37889999999987644 888863 2578999999999876 788777642 2356677777766
Q ss_pred cC-eeEEE
Q 023585 173 AR-KGIKI 179 (280)
Q Consensus 173 ~~-~~i~i 179 (280)
.. .++.+
T Consensus 137 ~~~~gi~~ 144 (158)
T PF13229_consen 137 NGGNGIYL 144 (158)
T ss_dssp ESSEEEE-
T ss_pred CcceeEEE
Confidence 54 56544
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.54 E-value=5.6e-07 Score=78.55 Aligned_cols=102 Identities=24% Similarity=0.336 Sum_probs=72.9
Q ss_pred EEeeecEEEEeEEEecCCCc----------------EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEE
Q 023585 17 FMNSRSIIISNVIFQNSPFW----------------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYI 80 (280)
Q Consensus 17 ~~~~~nv~I~gi~i~ns~~~----------------~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i 80 (280)
+..|++++|+++++ ++.++ .-.|.+|+||+|+|.++.+-+. ++.|+||+|.|++|
T Consensus 114 ~W~c~~i~l~nv~~-~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDA--------FWn~eNVtVyDS~i 184 (277)
T PF12541_consen 114 LWNCRGIKLKNVQA-NGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDA--------FWNCENVTVYDSVI 184 (277)
T ss_pred CEEeCCeEEEeEEE-eceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEecccc--------cccCCceEEEcceE
Confidence 34566666666665 33222 1356788999999999988642 35699999999998
Q ss_pred EcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEE
Q 023585 81 STGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHV 150 (280)
Q Consensus 81 ~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~I 150 (280)
..- - -+| .++|+++-||++.+ ..|+. .++|++.+||+|.+++.++.-
T Consensus 185 ~GE--Y----LgW---------~SkNltliNC~I~g-~QpLC-------Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 185 NGE--Y----LGW---------NSKNLTLINCTIEG-TQPLC-------YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred eee--E----EEE---------EcCCeEEEEeEEec-cCccE-------eecceEEeCcEeecceeeeee
Confidence 631 1 122 48999999999987 44443 689999999999988766544
No 24
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.50 E-value=3.2e-06 Score=79.49 Aligned_cols=131 Identities=17% Similarity=0.077 Sum_probs=97.9
Q ss_pred CCCCeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEc-CCceE
Q 023585 9 FTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST-GDDLV 87 (280)
Q Consensus 9 ~~rP~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~-gDD~i 87 (280)
..||.+|++..|++++|++.+|.+++.|+|.+..|+ ..|.+-+|.... ..+|++..+++++|++-.|.. .|++|
T Consensus 132 ~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~-~~I~~N~I~g~~----~~~I~lw~S~g~~V~~N~I~g~RD~gi 206 (455)
T TIGR03808 132 PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVS-GDISGNTITQIA----VTAIVSFDALGLIVARNTIIGANDNGI 206 (455)
T ss_pred cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCc-ceEecceEeccc----cceEEEeccCCCEEECCEEEccCCCCe
Confidence 468999999999999999999999999999999999 555555555543 256999999999999988865 66677
Q ss_pred EEecC-----------------------CCcc--CcccCCCeecEEEEeEEEeCCC-ceEEEcceecCCEEeEEEEeeEE
Q 023585 88 AVKSG-----------------------WDEY--GIAYGHPSSGITIRRVTGSSPF-SGIAVGSETSGGVENVLAEHINL 141 (280)
Q Consensus 88 aiksg-----------------------~~~~--g~~~~~~~~nI~I~n~~~~~~~-~gi~Igs~~~g~i~nI~~~n~~i 141 (280)
.+... ..++ |+.+ ..+.+++|++.++.... +||.+-+ .+|+.|++.++
T Consensus 207 ~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~-~~a~~v~V~gN~I~~~r~dgI~~ns-----ss~~~i~~N~~ 280 (455)
T TIGR03808 207 EILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINA-FRAGNVIVRGNRIRNCDYSAVRGNS-----ASNIQITGNSV 280 (455)
T ss_pred EEEEeeecCCcceeeccccccccccCCCcCCccccEEE-EccCCeEEECCEEeccccceEEEEc-----ccCcEEECcEe
Confidence 66521 1222 2222 24789999999998776 8998864 47777777777
Q ss_pred EeeCc-EEEE
Q 023585 142 YNVGV-GIHV 150 (280)
Q Consensus 142 ~~~~~-gi~I 150 (280)
.+... ||..
T Consensus 281 ~~~R~~alhy 290 (455)
T TIGR03808 281 SDVREVALYS 290 (455)
T ss_pred eeeeeeEEEE
Confidence 76655 5543
No 25
>smart00656 Amb_all Amb_all domain.
Probab=98.41 E-value=3.4e-06 Score=71.69 Aligned_cols=110 Identities=27% Similarity=0.271 Sum_probs=83.8
Q ss_pred ecEEEEeEE----EecCCCcEEEeeeeeeEEEEeEEEEcCCC--CCCCCeeeCCCCccEEEEeeEEEcC----------C
Q 023585 21 RSIIISNVI----FQNSPFWNIHPVYCSNVVIRYVTILAPAD--SPNTDGIDPDSSSNVCIEDSYISTG----------D 84 (280)
Q Consensus 21 ~nv~I~gi~----i~ns~~~~i~~~~~~nv~I~nv~I~~~~~--~~ntDGid~~~s~nV~I~n~~i~~g----------D 84 (280)
.|.+|.|.. |+ ...+.+..++||.|+|++|+.... .++.|+|.+..+++|.|++|.+..+ |
T Consensus 16 snkTI~G~~~~~~i~---g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D 92 (190)
T smart00656 16 SNKTIDGRGSKVEIK---GGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYD 92 (190)
T ss_pred CCCEEEecCCCcEEE---eeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCC
Confidence 466665542 22 256788889999999999999653 2467999999999999999999886 4
Q ss_pred ceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceec---CCEEeEEEEeeEEEee
Q 023585 85 DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETS---GGVENVLAEHINLYNV 144 (280)
Q Consensus 85 D~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~---g~i~nI~~~n~~i~~~ 144 (280)
..+.++. ++.+|+|++|+|....-++-+|+... ....+|++.++.+.+.
T Consensus 93 ~~~di~~-----------~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 93 GLIDIKN-----------GSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ccEEECc-----------ccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCc
Confidence 4445554 48999999999988788888987532 2345788888888764
No 26
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.22 E-value=4.9e-05 Score=66.48 Aligned_cols=136 Identities=30% Similarity=0.195 Sum_probs=103.9
Q ss_pred eeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecC
Q 023585 13 NLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 92 (280)
Q Consensus 13 ~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg 92 (280)
.-|.+.++++..|++.++.+.. .++.+..+.+++|++.+|... ..||.+..+++++|+++.+.....+|.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~- 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG- 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc-
Confidence 3577888889999888886554 467888999999999999885 478999999999999999988778888875
Q ss_pred CCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcCCCceEEEEEEEeEEEcc
Q 023585 93 WDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMEN 172 (280)
Q Consensus 93 ~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g~~g~v~nV~f~ni~~~~ 172 (280)
+.+.+|+++++.....||.+. ...+.++++.++.+...||.+... .+.++++-++.+
T Consensus 87 -----------s~~~~I~~N~i~~n~~GI~l~-----~s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~ 143 (236)
T PF05048_consen 87 -----------SSNNTISNNTISNNGYGIYLY-----GSSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISN 143 (236)
T ss_pred -----------CCCcEEECCEecCCCceEEEe-----eCCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeC
Confidence 455599999998776687774 245578888888877788888753 344455555555
Q ss_pred c-CeeEE
Q 023585 173 A-RKGIK 178 (280)
Q Consensus 173 ~-~~~i~ 178 (280)
. ..+|.
T Consensus 144 n~~~Gi~ 150 (236)
T PF05048_consen 144 NTDYGIY 150 (236)
T ss_pred CCccceE
Confidence 4 66666
No 27
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.21 E-value=4.3e-05 Score=72.00 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=99.0
Q ss_pred CeeEEEEeeecEEEEeEEEecCC------CcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEE-EcCC
Q 023585 12 PNLIEFMNSRSIIISNVIFQNSP------FWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYI-STGD 84 (280)
Q Consensus 12 P~~i~~~~~~nv~I~gi~i~ns~------~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i-~~gD 84 (280)
..++.-...++++|+|++|.++. ...|++..|++++|++++|.++. .-||.+..|+ .+|.+..| .+.+
T Consensus 106 ~~lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~ 180 (455)
T TIGR03808 106 PSLLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAV 180 (455)
T ss_pred ceEEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEecccc
Confidence 45666777999999999998876 34789999999999999999963 1589999998 55555555 4455
Q ss_pred ceEEEecCCCccCcccCCCeecEEEEeEEEeCC-CceEEEcce-------------------------ecC------CEE
Q 023585 85 DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSE-------------------------TSG------GVE 132 (280)
Q Consensus 85 D~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~-~~gi~Igs~-------------------------~~g------~i~ 132 (280)
..|.+. .+.+++|++.++.+. ++||.|.-. ..| ...
T Consensus 181 ~~I~lw------------~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~ 248 (455)
T TIGR03808 181 TAIVSF------------DALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAG 248 (455)
T ss_pred ceEEEe------------ccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccC
Confidence 554332 378899999998865 555555311 111 357
Q ss_pred eEEEEeeEEEeeC-cEEEEEEEcCCCceEEEEEEEeEEEcccCe
Q 023585 133 NVLAEHINLYNVG-VGIHVKTNIGRGGFIRNITVSDVYMENARK 175 (280)
Q Consensus 133 nI~~~n~~i~~~~-~gi~Iks~~g~~g~v~nV~f~ni~~~~~~~ 175 (280)
++++++.++.+.. .|+++.+. +|+.|++-++++.++
T Consensus 249 ~v~V~gN~I~~~r~dgI~~nss-------s~~~i~~N~~~~~R~ 285 (455)
T TIGR03808 249 NVIVRGNRIRNCDYSAVRGNSA-------SNIQITGNSVSDVRE 285 (455)
T ss_pred CeEEECCEEeccccceEEEEcc-------cCcEEECcEeeeeee
Confidence 8899999999888 89888875 344455545555544
No 28
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.17 E-value=2.5e-05 Score=66.98 Aligned_cols=110 Identities=27% Similarity=0.310 Sum_probs=76.8
Q ss_pred eecEEEEeE----EEecCCCcEEEee-eeeeEEEEeEEEEcC-----------CCCCCCCeeeCCCCccEEEEeeEEEcC
Q 023585 20 SRSIIISNV----IFQNSPFWNIHPV-YCSNVVIRYVTILAP-----------ADSPNTDGIDPDSSSNVCIEDSYISTG 83 (280)
Q Consensus 20 ~~nv~I~gi----~i~ns~~~~i~~~-~~~nv~I~nv~I~~~-----------~~~~ntDGid~~~s~nV~I~n~~i~~g 83 (280)
..|-+|.|. .|.+ +++.+. .++||.|+|++|... ......|++.+..++||.|++|.+..+
T Consensus 20 ~snkTi~G~g~~~~i~~---~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~ 96 (200)
T PF00544_consen 20 GSNKTIIGIGAGATIIG---GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWG 96 (200)
T ss_dssp ESSEEEEEETTTTEEES---SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEET
T ss_pred CCCcEEEEccCCeEEEC---ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEecc
Confidence 456677773 2222 567776 899999999999981 113467899999999999999999776
Q ss_pred ---------CceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEccee----cCCEEeEEEEeeEEEee
Q 023585 84 ---------DDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSET----SGGVENVLAEHINLYNV 144 (280)
Q Consensus 84 ---------DD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~----~g~i~nI~~~n~~i~~~ 144 (280)
|..+.++. .+.+|+|++|.+.....+.-+|+.. ... .+|+|.++.+.+.
T Consensus 97 ~~~~~~~~~Dg~idi~~-----------~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 97 NFECNSDSSDGLIDIKK-----------GSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp TS-GGGSSSSSSEEEES-----------STEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred ccccccccCCceEEEEe-----------CCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 44456654 4899999999998766667788752 234 8999999988764
No 29
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=3.7e-05 Score=68.55 Aligned_cols=128 Identities=23% Similarity=0.151 Sum_probs=93.5
Q ss_pred eEEEEeeecEEEEeEEEe-cCCCcEEEeeeeeeEEEEeEEEEcCCC-CCCCCeeeC-CCCccEEEEeeEEEcCCceEEEe
Q 023585 14 LIEFMNSRSIIISNVIFQ-NSPFWNIHPVYCSNVVIRYVTILAPAD-SPNTDGIDP-DSSSNVCIEDSYISTGDDLVAVK 90 (280)
Q Consensus 14 ~i~~~~~~nv~I~gi~i~-ns~~~~i~~~~~~nv~I~nv~I~~~~~-~~ntDGid~-~~s~nV~I~n~~i~~gDD~iaik 90 (280)
.+.+.-|.|.+|.|+.-. ---.|++.+...+||.|+|++|..... -++-|+|.+ ..++|+.|++|++..+.-. -
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~---~ 170 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYN---A 170 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccc---c
Confidence 377888889998888632 223588999999999999999998542 234588999 7899999999999873211 0
Q ss_pred cCCCccCc-ccCCCeecEEEEeEEEeCCCceEEEcceec----CCEEeEEEEeeEEEee
Q 023585 91 SGWDEYGI-AYGHPSSGITIRRVTGSSPFSGIAVGSETS----GGVENVLAEHINLYNV 144 (280)
Q Consensus 91 sg~~~~g~-~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~----g~i~nI~~~n~~i~~~ 144 (280)
++..-||. ++.+.+..|+|+++++...+-++-+|+... .+-.+|++.++.+.+.
T Consensus 171 ~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 171 SGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred cccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 11112221 233458999999999998888888987642 3567888888888874
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.07 E-value=8.1e-05 Score=65.09 Aligned_cols=115 Identities=30% Similarity=0.157 Sum_probs=98.7
Q ss_pred eEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecCC
Q 023585 14 LIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGW 93 (280)
Q Consensus 14 ~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~ 93 (280)
-+.+..+.+++|++.++.+. .+++++..|++++|++..+.... .||.+..+.+.+|++..|.....+|.+..
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~-----~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-- 108 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNNG-----YGIYLMGSSNNTISNNTISNNGYGIYLYG-- 108 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEccC-----CCEEEEcCCCcEEECCEecCCCceEEEee--
Confidence 45789999999999999988 88999999999999999999953 89999988878999999988877888775
Q ss_pred CccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEee-CcEEEEE
Q 023585 94 DEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNV-GVGIHVK 151 (280)
Q Consensus 94 ~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~-~~gi~Ik 151 (280)
+.+.+|+++++.....||.+.. ..+.++++.++.+. ..||.+.
T Consensus 109 ----------s~~~~I~~N~i~~~~~GI~l~~-----s~~n~I~~N~i~~n~~~Gi~~~ 152 (236)
T PF05048_consen 109 ----------SSNNTISNNTISNNGYGIYLSS-----SSNNTITGNTISNNTDYGIYFL 152 (236)
T ss_pred ----------CCceEEECcEEeCCCEEEEEEe-----CCCCEEECeEEeCCCccceEEe
Confidence 5778899999987788999864 27888888989887 7888843
No 31
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.03 E-value=6.2e-05 Score=60.52 Aligned_cols=121 Identities=31% Similarity=0.277 Sum_probs=85.6
Q ss_pred CeeEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCc-eEEEe
Q 023585 12 PNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD-LVAVK 90 (280)
Q Consensus 12 P~~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD-~iaik 90 (280)
-..|.+..+..++|++-++.+ ...++.+....+++++++++.... .|+.+..+.+++|++|.|....+ +|.++
T Consensus 23 ~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~ 96 (158)
T PF13229_consen 23 GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-----SGIYVSGSSNITIENNRIENNGDYGIYIS 96 (158)
T ss_dssp SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-----EEEECCS-CS-EEES-EEECSSS-SCE-T
T ss_pred CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-----ceEEEEecCCceecCcEEEcCCCccEEEe
Confidence 346888999999999999999 777899999999999999999853 68999999999999999987544 66654
Q ss_pred cCCCccCcccCCCeecEEEEeEEEeCC-CceEEEcceecCCEEeEEEEeeEEEeeC-cEEEEEE
Q 023585 91 SGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSETSGGVENVLAEHINLYNVG-VGIHVKT 152 (280)
Q Consensus 91 sg~~~~g~~~~~~~~nI~I~n~~~~~~-~~gi~Igs~~~g~i~nI~~~n~~i~~~~-~gi~Iks 152 (280)
. +..+++|++|++... ..|+.+... .-.+++|+++++.+.. .|+.+..
T Consensus 97 ~-----------~~~~~~i~~n~~~~~~~~gi~~~~~---~~~~~~i~~n~i~~~~~~gi~~~~ 146 (158)
T PF13229_consen 97 N-----------SSSNVTIENNTIHNNGGSGIYLEGG---SSPNVTIENNTISNNGGNGIYLIS 146 (158)
T ss_dssp C-----------EECS-EEES-EEECCTTSSCEEEEC---C--S-EEECEEEECESSEEEE-TT
T ss_pred c-----------cCCCEEEEeEEEEeCcceeEEEECC---CCCeEEEEEEEEEeCcceeEEEEC
Confidence 2 268899999999876 478887643 2458999999999875 6776654
No 32
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.91 E-value=0.00088 Score=57.35 Aligned_cols=119 Identities=29% Similarity=0.418 Sum_probs=69.2
Q ss_pred EEEEeEEEEcCCCCCC--CCeeeCCCCccEEEEeeEEEc-CCceEEEecCCCc--------cCcccCCCeecEEEEeEEE
Q 023585 46 VVIRYVTILAPADSPN--TDGIDPDSSSNVCIEDSYIST-GDDLVAVKSGWDE--------YGIAYGHPSSGITIRRVTG 114 (280)
Q Consensus 46 v~I~nv~I~~~~~~~n--tDGid~~~s~nV~I~n~~i~~-gDD~iaiksg~~~--------~g~~~~~~~~nI~I~n~~~ 114 (280)
+.|+|++|........ ..|+.+..+++++|+||.+.. +.+++.+...... .+..+.....++.+.||.+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIF 173 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCccc
Confidence 4599999988754332 368888889999999998875 4566666521110 0110100123345556666
Q ss_pred eCCCceEEEcceecCCEEeEEEEeeEEEe-eCcEEEEEEEcCCCceEEEEEEEeEEEcccCeeE
Q 023585 115 SSPFSGIAVGSETSGGVENVLAEHINLYN-VGVGIHVKTNIGRGGFIRNITVSDVYMENARKGI 177 (280)
Q Consensus 115 ~~~~~gi~Igs~~~g~i~nI~~~n~~i~~-~~~gi~Iks~~g~~g~v~nV~f~ni~~~~~~~~i 177 (280)
.+...|+..++ .+++++||.+.+ ...|+.+... .+++++|++++++..+|
T Consensus 174 ~~~~~g~~~~~------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 174 NGGDNGIILGN------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp ESSSCSEECEE------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSSEEE
T ss_pred cCCCceeEeec------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCccCc
Confidence 55555543332 677888888776 5567766653 12666666666655543
No 33
>smart00656 Amb_all Amb_all domain.
Probab=97.63 E-value=0.0031 Score=53.58 Aligned_cols=143 Identities=15% Similarity=0.062 Sum_probs=92.6
Q ss_pred eEEEEeeecEEEEeEEEecCCC------cEEEeeeeeeEEEEeEEEEcCCC----CCCCCee-eCC-CCccEEEEeeEEE
Q 023585 14 LIEFMNSRSIIISNVIFQNSPF------WNIHPVYCSNVVIRYVTILAPAD----SPNTDGI-DPD-SSSNVCIEDSYIS 81 (280)
Q Consensus 14 ~i~~~~~~nv~I~gi~i~ns~~------~~i~~~~~~nv~I~nv~I~~~~~----~~ntDGi-d~~-~s~nV~I~n~~i~ 81 (280)
-|.+..++||.|++|++++... .+|.+..+++|.|+++++..... ..-.||. ++. .+.+|+|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3667779999999999998643 68999999999999999998510 1113554 443 5799999999998
Q ss_pred cCCceEEEecCCCccCcccCCCeecEEEEeEEEeCC-CceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcCCCceE
Q 023585 82 TGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFI 160 (280)
Q Consensus 82 ~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~-~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g~~g~v 160 (280)
..+-+.-+.++.+... ....+|++.++++... ...-++. .+ .+++.|..+.+.. +..+....+..-.+
T Consensus 113 ~h~~~~liG~~d~~~~----~~~~~vT~h~N~~~~~~~R~P~~r----~g--~~hv~NN~~~n~~-~~~~~~~~~~~v~~ 181 (190)
T smart00656 113 NHWKVMLLGHSDSDTD----DGKMRVTIAHNYFGNLRQRAPRVR----FG--YVHVYNNYYTGWT-SYAIGGRMGATILS 181 (190)
T ss_pred cCCEEEEEccCCCccc----cccceEEEECcEEcCcccCCCccc----CC--EEEEEeeEEeCcc-cEeEecCCCcEEEE
Confidence 7776666665421100 0135799999988543 3333332 12 6888888887764 33344332222344
Q ss_pred EEEEEEe
Q 023585 161 RNITVSD 167 (280)
Q Consensus 161 ~nV~f~n 167 (280)
|+=.|++
T Consensus 182 E~N~F~~ 188 (190)
T smart00656 182 EGNYFEA 188 (190)
T ss_pred ECeEEEC
Confidence 5444443
No 34
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.52 E-value=0.0014 Score=55.99 Aligned_cols=104 Identities=26% Similarity=0.269 Sum_probs=67.4
Q ss_pred EEEEeEEEecCC------CcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCC--------------------CccEEEE
Q 023585 23 IIISNVIFQNSP------FWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDS--------------------SSNVCIE 76 (280)
Q Consensus 23 v~I~gi~i~ns~------~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~--------------------s~nV~I~ 76 (280)
+.|+++++.... .-.+++..+++++|+|+++.+.. .+|+.+.. +.++.+.
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSG----GDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVN 169 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-S----S-SEEEECCEECEEECCEEEEEEEEESCEEEEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccC----ccEEEEEccccCcEeecccceeeeeccceeEEEEC
Confidence 347777775433 24588888999999999998742 13333321 1234445
Q ss_pred eeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeC-CCceEEEcceecCCEEeEEEEeeEEEeeCcEE
Q 023585 77 DSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSS-PFSGIAVGSETSGGVENVLAEHINLYNVGVGI 148 (280)
Q Consensus 77 n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~-~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi 148 (280)
++.+..+++++ .. ..+++.|+||++.. ...||.+-.. .+++++|+++.+...|+
T Consensus 170 ~~~~~~~~~g~--~~-----------~~~~~~i~n~~~~~~~~~gi~i~~~-----~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 170 NCIFNGGDNGI--IL-----------GNNNITISNNTFEGNCGNGINIEGG-----SNIIISNNTIENCDDGI 224 (225)
T ss_dssp CEEEESSSCSE--EC-----------EEEEEEEECEEEESSSSESEEEEEC-----SEEEEEEEEEESSSEEE
T ss_pred CccccCCCcee--Ee-----------ecceEEEEeEEECCccceeEEEECC-----eEEEEEeEEEECCccCc
Confidence 55555555552 11 24799999999987 5789988654 33777777777776665
No 35
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.013 Score=52.53 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=82.4
Q ss_pred eEEEEeeecEEEEeEEEecCC-----CcEEEe-eeeeeEEEEeEEEEcCCC---CCCCCe-eeCC-CCccEEEEeeEEEc
Q 023585 14 LIEFMNSRSIIISNVIFQNSP-----FWNIHP-VYCSNVVIRYVTILAPAD---SPNTDG-IDPD-SSSNVCIEDSYIST 82 (280)
Q Consensus 14 ~i~~~~~~nv~I~gi~i~ns~-----~~~i~~-~~~~nv~I~nv~I~~~~~---~~ntDG-id~~-~s~nV~I~n~~i~~ 82 (280)
-|.+....||.|++|++...+ +..|.+ ....|+.|+++++..... ....|| +|+. .+..|+|.++.+..
T Consensus 118 gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhd 197 (345)
T COG3866 118 GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHD 197 (345)
T ss_pred eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeec
Confidence 467788999999999999776 467888 789999999999998542 112344 3443 57899999999999
Q ss_pred CCceEEEecCCCccCcccCCCeecEEEEeEEEeCC---CceEEEcceecCCEEeEEEEeeEEE
Q 023585 83 GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP---FSGIAVGSETSGGVENVLAEHINLY 142 (280)
Q Consensus 83 gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~---~~gi~Igs~~~g~i~nI~~~n~~i~ 142 (280)
.|-..-+++...++ ....-.+|++.+++|.+- .-.+++|. +++.|....
T Consensus 198 h~Kssl~G~sD~~~---~~~~~~kvT~hhNyFkn~~qR~PriRfG~--------vHvyNNYy~ 249 (345)
T COG3866 198 HDKSSLLGSSDSSN---YDDGKYKVTIHHNYFKNLYQRGPRIRFGM--------VHVYNNYYE 249 (345)
T ss_pred CCeeeeeccCCccc---ccCCceeEEEeccccccccccCCceEeeE--------EEEeccccc
Confidence 88777666532111 112357899999998653 22466654 455555555
No 36
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.64 E-value=0.0088 Score=51.24 Aligned_cols=117 Identities=22% Similarity=0.138 Sum_probs=72.9
Q ss_pred EeeecEEEEeEEEec---------------CCCcEEEeeeeeeEEEEeEEEEcCCC---CCCCCe-eeCC-CCccEEEEe
Q 023585 18 MNSRSIIISNVIFQN---------------SPFWNIHPVYCSNVVIRYVTILAPAD---SPNTDG-IDPD-SSSNVCIED 77 (280)
Q Consensus 18 ~~~~nv~I~gi~i~n---------------s~~~~i~~~~~~nv~I~nv~I~~~~~---~~ntDG-id~~-~s~nV~I~n 77 (280)
.+++||.|++|++.. .....+.+..+++|.|+++++..... ....|| +|+. .+++|+|.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 589999999999998 24467999999999999999998721 011354 5653 689999999
Q ss_pred eEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCC-CceEEEcceecCCEEeEEEEeeEEEee
Q 023585 78 SYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGIAVGSETSGGVENVLAEHINLYNV 144 (280)
Q Consensus 78 ~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~-~~gi~Igs~~~g~i~nI~~~n~~i~~~ 144 (280)
|.|...+.+..+++.. .. ..+.. .+|++.++.+... ...=++. .-.+++.|..+.+.
T Consensus 123 n~f~~~~k~~l~G~~d-~~--~~~~~-~~vT~hhN~f~~~~~R~P~~r------~G~~Hv~NN~~~~~ 180 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSD-SN--STDRG-LRVTFHHNYFANTNSRNPRVR------FGYVHVYNNYYYNW 180 (200)
T ss_dssp -EEEEEEETCEESSCT-TC--GGGTT-EEEEEES-EEEEEEE-TTEEC------SCEEEEES-EEEEE
T ss_pred hhccccccccccCCCC-Cc--cccCC-ceEEEEeEEECchhhCCCccc------ccEEEEEEeeeECC
Confidence 9998876655454421 11 12223 8899999888542 1111221 12477778766653
No 37
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.75 E-value=1.5 Score=40.34 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=55.0
Q ss_pred eecEEEEeEEEecCCC-----------------------------cEEEeeeeeeEEEEeEEEEcCCC---CCCCCeeeC
Q 023585 20 SRSIIISNVIFQNSPF-----------------------------WNIHPVYCSNVVIRYVTILAPAD---SPNTDGIDP 67 (280)
Q Consensus 20 ~~nv~I~gi~i~ns~~-----------------------------~~i~~~~~~nv~I~nv~I~~~~~---~~ntDGid~ 67 (280)
..++.|+|++++++.. ++|.+.++.++.|.+.+|....+ ..-..||.+
T Consensus 76 aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~v 155 (408)
T COG3420 76 APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYV 155 (408)
T ss_pred CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEE
Confidence 6778888888875432 35778888888888888887654 234568888
Q ss_pred CCCccEEEEeeEEEcCCceEEEec
Q 023585 68 DSSSNVCIEDSYISTGDDLVAVKS 91 (280)
Q Consensus 68 ~~s~nV~I~n~~i~~gDD~iaiks 91 (280)
.+++.++|..-.|.-+.|||-.+.
T Consensus 156 yNa~~a~V~~ndisy~rDgIy~~~ 179 (408)
T COG3420 156 YNAPGALVVGNDISYGRDGIYSDT 179 (408)
T ss_pred EcCCCcEEEcCccccccceEEEcc
Confidence 888899998888888888876654
No 38
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=94.01 E-value=0.32 Score=43.68 Aligned_cols=150 Identities=19% Similarity=0.218 Sum_probs=76.2
Q ss_pred eeEEEEeeecEEEE---eEEEecCCCcEEEee--eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceE
Q 023585 13 NLIEFMNSRSIIIS---NVIFQNSPFWNIHPV--YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLV 87 (280)
Q Consensus 13 ~~i~~~~~~nv~I~---gi~i~ns~~~~i~~~--~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~i 87 (280)
+.|.-.+|+|-+|. ||.+..|.+..-.+. ..+|.++.|++=. +.. .=+++.+.++..|+|..-.+=--..
T Consensus 210 hvie~inctngkinwgigiglagstydn~ype~q~vknfvvanitgs---~cr--qlvhvengkhfvirnvkaknitpdf 284 (464)
T PRK10123 210 HVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGS---DCR--QLIHVENGKHFVIRNIKAKNITPDF 284 (464)
T ss_pred heheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCc---Chh--heEEecCCcEEEEEeeeccccCCCc
Confidence 34455566666663 344444444332222 1234444443311 111 2356677778888887765411111
Q ss_pred EEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEccee-cC----CEEeEEEEeeEEEee-----CcEEEEEEEcCCC
Q 023585 88 AVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSET-SG----GVENVLAEHINLYNV-----GVGIHVKTNIGRG 157 (280)
Q Consensus 88 aiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~-~g----~i~nI~~~n~~i~~~-----~~gi~Iks~~g~~ 157 (280)
+-|+|-+.....+ -+|.|..|+|..+.+ +.|+-||-+- .| --.|....|+.+.++ -+||.|.+-
T Consensus 285 skkagidnatvai-ygcdnfvidni~mvn-sagmligygvikg~ylsipqnfkln~i~ldn~~l~yklrgiqissg---- 358 (464)
T PRK10123 285 SKKAGIDNATVAI-YGCDNFVIDNIEMIN-SAGMLIGYGVIKGKYLSIPQNFKLNNIQLDNTHLAYKLRGIQISAG---- 358 (464)
T ss_pred hhhcCCCcceEEE-EcccceEEecccccc-ccccEEEeeeeeccEecccccceeceEeecccccceeeeeeEeccC----
Confidence 1222210000000 138999999999987 7888888642 11 224555555555544 467777652
Q ss_pred ceEEEEEEEeEEEccc
Q 023585 158 GFIRNITVSDVYMENA 173 (280)
Q Consensus 158 g~v~nV~f~ni~~~~~ 173 (280)
...+=|-+.|+.|+..
T Consensus 359 natsfvaitn~~mkra 374 (464)
T PRK10123 359 NAVSFVALTNIEMKRA 374 (464)
T ss_pred CcceEEEEeeeehhhh
Confidence 3345555666666543
No 39
>PLN02773 pectinesterase
Probab=93.85 E-value=2.1 Score=39.26 Aligned_cols=111 Identities=10% Similarity=0.082 Sum_probs=66.5
Q ss_pred eeeeeEEEEeEEEEcCCCCC--CCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCC
Q 023585 41 VYCSNVVIRYVTILAPADSP--NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 118 (280)
Q Consensus 41 ~~~~nv~I~nv~I~~~~~~~--ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~ 118 (280)
...+++..+||+|.|..... -.-.+.+ .++++.+.||.|...-|-+-.+. -.-.++||++.+.
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v-~gDr~~f~~c~~~G~QDTL~~~~-------------gr~yf~~c~IeG~- 163 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRV-TADRCAFYNCRFLGWQDTLYLHY-------------GKQYLRDCYIEGS- 163 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEe-cCccEEEEccEeecccceeEeCC-------------CCEEEEeeEEeec-
Confidence 34678888888888864211 1123333 36888888888887777765543 2367888888763
Q ss_pred ceEEEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcCC-CceEEEEEEEeEEEccc
Q 023585 119 SGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGR-GGFIRNITVSDVYMENA 173 (280)
Q Consensus 119 ~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g~-~g~v~nV~f~ni~~~~~ 173 (280)
-=+-+|. -...|++|++.....| .|...... ...-....|.|+++...
T Consensus 164 VDFIFG~------g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 164 VDFIFGN------STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGN 212 (317)
T ss_pred ccEEeec------cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecC
Confidence 3344553 3468888888755444 34322100 11223567888888764
No 40
>PLN02480 Probable pectinesterase
Probab=92.44 E-value=7.3 Score=36.21 Aligned_cols=116 Identities=4% Similarity=-0.042 Sum_probs=71.8
Q ss_pred EEEeeeeeeEEEEeEEEEcCCCC-----CCCCeeeC-CCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEE
Q 023585 37 NIHPVYCSNVVIRYVTILAPADS-----PNTDGIDP-DSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIR 110 (280)
Q Consensus 37 ~i~~~~~~nv~I~nv~I~~~~~~-----~ntDGid~-~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~ 110 (280)
++.+ ..++++++||+|.|.... ...-++-+ ..++++.++||.|...-|-+-... -.-.++
T Consensus 126 TvtV-~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~-------------gR~yf~ 191 (343)
T PLN02480 126 TFTV-EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK-------------GRHYYH 191 (343)
T ss_pred EEEE-ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC-------------CCEEEE
Confidence 3444 458899999999997321 11123433 257999999999988877765333 236789
Q ss_pred eEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCc-----EEEEEEEcCCCceEEEEEEEeEEEccc
Q 023585 111 RVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGV-----GIHVKTNIGRGGFIRNITVSDVYMENA 173 (280)
Q Consensus 111 n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~-----gi~Iks~~g~~g~v~nV~f~ni~~~~~ 173 (280)
||++.+. -=+-+|. -...|+||++..... .=.|.........-....|.|+++...
T Consensus 192 ~C~IeG~-VDFIFG~------g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 192 SCYIQGS-IDFIFGR------GRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred eCEEEee-eeEEccc------eeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEccc
Confidence 9999873 3344543 467888998875421 112332211112234678899998764
No 41
>PLN02480 Probable pectinesterase
Probab=90.77 E-value=8.7 Score=35.71 Aligned_cols=82 Identities=9% Similarity=-0.083 Sum_probs=50.7
Q ss_pred eeCCCCccEEEEeeEEEcCC----------ceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeE
Q 023585 65 IDPDSSSNVCIEDSYISTGD----------DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENV 134 (280)
Q Consensus 65 id~~~s~nV~I~n~~i~~gD----------D~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI 134 (280)
+.+. ..+++++|+.|.+.. =+|++.. ....+.|+||.+.+..+-|--. --.-
T Consensus 127 vtV~-a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v-----------~gDra~f~~c~f~G~QDTLy~~------~gR~ 188 (343)
T PLN02480 127 FTVE-APHFVAFGISIRNDAPTGMAFTSENQSVAAFV-----------GADKVAFYHCAFYSTHNTLFDY------KGRH 188 (343)
T ss_pred EEEE-CCCEEEEeeEEEecCCCCCCCCCCCceEEEEe-----------cCCcEEEEeeEEecccceeEeC------CCCE
Confidence 4443 578888888887751 2344432 2678999999998876666532 1356
Q ss_pred EEEeeEEEeeCcEEEEEEEcCCCceEEEEEEEeEEEccc
Q 023585 135 LAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENA 173 (280)
Q Consensus 135 ~~~n~~i~~~~~gi~Iks~~g~~g~v~nV~f~ni~~~~~ 173 (280)
.|+||.|++.-.=| + |. -...|+|+++...
T Consensus 189 yf~~C~IeG~VDFI-F----G~----g~a~fe~C~i~s~ 218 (343)
T PLN02480 189 YYHSCYIQGSIDFI-F----GR----GRSIFHNCEIFVI 218 (343)
T ss_pred EEEeCEEEeeeeEE-c----cc----eeEEEEccEEEEe
Confidence 78889888752211 1 11 2445777777654
No 42
>PLN02773 pectinesterase
Probab=90.75 E-value=8.3 Score=35.44 Aligned_cols=135 Identities=16% Similarity=0.178 Sum_probs=87.5
Q ss_pred EEeeecEEEEeEEEecCCC------cEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEe
Q 023585 17 FMNSRSIIISNVIFQNSPF------WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVK 90 (280)
Q Consensus 17 ~~~~~nv~I~gi~i~ns~~------~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaik 90 (280)
+..++++..++|+|+|... -.+.+. .+.+.+.+|++.+.. |-+-.. ..+-.++||+|.-.=|=| ++
T Consensus 98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~-gDr~~f~~c~~~G~Q-----DTL~~~-~gr~yf~~c~IeG~VDFI-FG 169 (317)
T PLN02773 98 IVEGEDFIAENITFENSAPEGSGQAVAIRVT-ADRCAFYNCRFLGWQ-----DTLYLH-YGKQYLRDCYIEGSVDFI-FG 169 (317)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCcEEEEEec-CccEEEEccEeeccc-----ceeEeC-CCCEEEEeeEEeecccEE-ee
Confidence 3458999999999999843 234443 688999999999865 334333 246899999998765554 23
Q ss_pred cCCCccCcccCCCeecEEEEeEEEeCCCceE-EEcce-ecCCEEeEEEEeeEEEeeCc--EEEEEEEcCCC-ceEEEEEE
Q 023585 91 SGWDEYGIAYGHPSSGITIRRVTGSSPFSGI-AVGSE-TSGGVENVLAEHINLYNVGV--GIHVKTNIGRG-GFIRNITV 165 (280)
Q Consensus 91 sg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi-~Igs~-~~g~i~nI~~~n~~i~~~~~--gi~Iks~~g~~-g~v~nV~f 165 (280)
. -...+++|.+.....|. ..-+- ....-.-..|.||++..... -.+++ +. +.-..+.|
T Consensus 170 ~-------------g~a~Fe~c~i~s~~~g~ITA~~r~~~~~~~GfvF~~c~it~~~~~~~~yLG----RpW~~~a~vVf 232 (317)
T PLN02773 170 N-------------STALLEHCHIHCKSAGFITAQSRKSSQESTGYVFLRCVITGNGGSGYMYLG----RPWGPFGRVVF 232 (317)
T ss_pred c-------------cEEEEEeeEEEEccCcEEECCCCCCCCCCceEEEEccEEecCCCCcceeec----CCCCCCceEEE
Confidence 2 34899999997654442 21111 11123458999999987532 12222 21 34568889
Q ss_pred EeEEEcccCee
Q 023585 166 SDVYMENARKG 176 (280)
Q Consensus 166 ~ni~~~~~~~~ 176 (280)
.|..|.+.-.|
T Consensus 233 ~~t~l~~~I~p 243 (317)
T PLN02773 233 AYTYMDACIRP 243 (317)
T ss_pred EecccCCeEcc
Confidence 99998875444
No 43
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=89.50 E-value=4.6 Score=35.71 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=27.1
Q ss_pred cEEEEeEEEeCC-CceEEEcce-ecCCEEeEEEEeeEEEeeCcEEEEEEE
Q 023585 106 GITIRRVTGSSP-FSGIAVGSE-TSGGVENVLAEHINLYNVGVGIHVKTN 153 (280)
Q Consensus 106 nI~I~n~~~~~~-~~gi~Igs~-~~g~i~nI~~~n~~i~~~~~gi~Iks~ 153 (280)
+.+|+||+|.+. .+|+.+-.. ....+.+++|+...+.....|+.+...
T Consensus 123 ~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~ 172 (246)
T PF07602_consen 123 SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDN 172 (246)
T ss_pred CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEcc
Confidence 566666666542 445544222 134566666777666666667766643
No 44
>PLN02682 pectinesterase family protein
Probab=87.65 E-value=21 Score=33.52 Aligned_cols=112 Identities=9% Similarity=-0.007 Sum_probs=66.6
Q ss_pred eeeeeEEEEeEEEEcCCCCC-------CCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEE
Q 023585 41 VYCSNVVIRYVTILAPADSP-------NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVT 113 (280)
Q Consensus 41 ~~~~nv~I~nv~I~~~~~~~-------ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~ 113 (280)
...+++..+|++|.|....+ -.-.+.+ .++++.+.+|.|...-|-+-... -.-.++||+
T Consensus 160 v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v-~gDr~~fy~C~f~G~QDTLy~~~-------------gRqyf~~C~ 225 (369)
T PLN02682 160 VNSPYFIAKNITFKNTAPVPPPGALGKQAVALRI-SADTAAFYGCKFLGAQDTLYDHL-------------GRHYFKDCY 225 (369)
T ss_pred EECCCeEEEeeEEEcccccCCCCCCcccEEEEEe-cCCcEEEEcceEeccccceEECC-------------CCEEEEeeE
Confidence 34567888888888864210 1112233 36888888888887777765443 236788888
Q ss_pred EeCCCceEEEcceecCCEEeEEEEeeEEEeeCc-EEEEEEEcC-CCceEEEEEEEeEEEccc
Q 023585 114 GSSPFSGIAVGSETSGGVENVLAEHINLYNVGV-GIHVKTNIG-RGGFIRNITVSDVYMENA 173 (280)
Q Consensus 114 ~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~-gi~Iks~~g-~~g~v~nV~f~ni~~~~~ 173 (280)
+.+. -=+-+|. -...|++|++..... .-.|..... ....-....|.|+++...
T Consensus 226 IeG~-VDFIFG~------g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 226 IEGS-VDFIFGN------GLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred Eccc-ccEEecC------ceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCC
Confidence 8763 3344443 467888888875322 113332210 112235677889998764
No 45
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=87.10 E-value=18 Score=35.86 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=69.4
Q ss_pred eeeeeEEEEeEEEEcCCCCCC--CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCC
Q 023585 41 VYCSNVVIRYVTILAPADSPN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 118 (280)
Q Consensus 41 ~~~~nv~I~nv~I~~~~~~~n--tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~ 118 (280)
...+++..+|++|.|...... .-.+.+ .++.+.+.||.|...-|-+-..++ .-.+++|++.|.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv-~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gt- 391 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRS-DSDLSVIENCEFLGNQDTLYAHSL-------------RQFYKSCRIQGN- 391 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEe-cCCcEEEEeeeeeeccccceeCCC-------------ceEEEeeEEeec-
Confidence 345788889999988653211 223333 468888899998887777655432 246788998874
Q ss_pred ceEEEcceecCCEEeEEEEeeEEEeeCc------E--EEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 119 SGIAVGSETSGGVENVLAEHINLYNVGV------G--IHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 119 ~gi~Igs~~~g~i~nI~~~n~~i~~~~~------g--i~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
-=+-+|. -...|+||++.-..+ | -.|.. .++ ...-..+.|.|+++...
T Consensus 392 VDFIFG~------a~avfq~c~i~~~~~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 392 VDFIFGN------SAAVFQDCAILIAPRQLKPEKGENNAVTA-HGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred CCEEecC------ceEEEEccEEEEeccccCCCCCCceEEEe-CCCCCCCCCceEEEEccEEecC
Confidence 3344553 467888998874311 1 23322 221 23345788999998764
No 46
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=86.85 E-value=9.2 Score=33.83 Aligned_cols=105 Identities=24% Similarity=0.234 Sum_probs=72.1
Q ss_pred EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEc-CCceEEEecCCCccCcccCCCeecEEEEeEEEe
Q 023585 37 NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST-GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGS 115 (280)
Q Consensus 37 ~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~-gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~ 115 (280)
.+.+....+.+|++++|.++.. .-.-|+.+.++ +.+|+||.|.. .-++|.+... . ......+++|++..+.
T Consensus 90 n~tI~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~-~-----~~~~i~~~vI~GN~~~ 161 (246)
T PF07602_consen 90 NVTIILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGT-S-----ANPGINGNVISGNSIY 161 (246)
T ss_pred eEEEEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEEee-e-----cCCcccceEeecceEE
Confidence 3556667889999999999731 12347888765 99999999976 4677776432 1 0124788889988888
Q ss_pred CCCceEEEcceecCCEEeEEEEeeEEEeeCcEEEEE
Q 023585 116 SPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVK 151 (280)
Q Consensus 116 ~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~gi~Ik 151 (280)
....|+++-....+ +.| .++|..+++...||.+.
T Consensus 162 ~~~~Gi~i~~~~~~-~~n-~I~NN~I~~N~~Gi~~~ 195 (246)
T PF07602_consen 162 FNKTGISISDNAAP-VEN-KIENNIIENNNIGIVAI 195 (246)
T ss_pred ecCcCeEEEcccCC-ccc-eeeccEEEeCCcCeEee
Confidence 77789988644333 333 44777787766687755
No 47
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=86.49 E-value=21 Score=30.95 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=74.4
Q ss_pred eeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEE-EcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCC-CceE
Q 023585 44 SNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYI-STGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP-FSGI 121 (280)
Q Consensus 44 ~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i-~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~-~~gi 121 (280)
+..+++|+.|-.+ ..||||..+ +-+|+|+.. ..+.|++++|.. ...++|.+.-..+. +--|
T Consensus 61 ~GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~-----------~~~~~I~ggga~~A~DKV~ 123 (215)
T PF03211_consen 61 DGATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGD-----------GGTVTIIGGGARNASDKVF 123 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESS-----------EEEEEEESTEEEEEEEEEE
T ss_pred CCCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCC-----------CceEEEeCCcccCCCccEE
Confidence 6799999998653 359999875 788999988 458999999974 22555555544432 2223
Q ss_pred EEcceecCCEEeEEEEeeEEEeeCcEEEEEEEcC---CCceEEEEEEEeEEEcccCeeEEEEeeeCCCCCCCCCCCCCCe
Q 023585 122 AVGSETSGGVENVLAEHINLYNVGVGIHVKTNIG---RGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPV 198 (280)
Q Consensus 122 ~Igs~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g---~~g~v~nV~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~ 198 (280)
..- .--.++|+|..+.+ .|--..|..+ .++.=++|.+++........-+-|..+|++ ...
T Consensus 124 Q~N-----g~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD----------~at 186 (215)
T PF03211_consen 124 QHN-----GGGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD----------TAT 186 (215)
T ss_dssp EE------SSEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT----------TEE
T ss_pred Eec-----CceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC----------eEE
Confidence 332 12356777755544 3544555421 123456777777665544444455556642 236
Q ss_pred EEeEEEEE
Q 023585 199 VNGITIKD 206 (280)
Q Consensus 199 i~nIt~~N 206 (280)
|+++.++.
T Consensus 187 i~~~~~~~ 194 (215)
T PF03211_consen 187 ISNSCIKG 194 (215)
T ss_dssp EEEEEEEE
T ss_pred EEEEEecC
Confidence 77777666
No 48
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=85.40 E-value=27 Score=33.41 Aligned_cols=124 Identities=10% Similarity=0.048 Sum_probs=68.7
Q ss_pred eeeeeEEEEeEEEEcCCCC----CC--CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEE
Q 023585 41 VYCSNVVIRYVTILAPADS----PN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTG 114 (280)
Q Consensus 41 ~~~~nv~I~nv~I~~~~~~----~n--tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~ 114 (280)
...+++..+||+|.|.... .+ .-.+.+ ..+.+.+.+|.|...-|-+-..+.....+...+ -...-.++||++
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv-~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~-~~gRqYf~~CyI 280 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSVDAGNHPAVALRT-DGDKVQIENVNILGRQDTFFVTNSGVQNRLETD-RQPRTYVKNSYI 280 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE-cCCcEEEEeeEEecccceeeecccccccccccc-ccccEEEEeCEE
Confidence 3567888999999986421 01 112333 368888888888887777655322100000000 123477888888
Q ss_pred eCCCceEEEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCCCceEEEEEEEeEEEccc
Q 023585 115 SSPFSGIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGRGGFIRNITVSDVYMENA 173 (280)
Q Consensus 115 ~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~~g~v~nV~f~ni~~~~~ 173 (280)
.+. -=+-+|. -...|+||++..... .-.|.........-....|.|+++...
T Consensus 281 eG~-VDFIFG~------g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 281 EGD-VDFVFGR------GAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred eec-ccEEccC------ceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecC
Confidence 773 3344553 456788888865421 122322111122334677888888764
No 49
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=85.29 E-value=11 Score=35.59 Aligned_cols=64 Identities=14% Similarity=0.070 Sum_probs=40.8
Q ss_pred eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceE
Q 023585 42 YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGI 121 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi 121 (280)
+=.+|++.|+++...+ . .-|+-+.+..++++++|.|..- -+.++++ .....|++|+|.+-..|+
T Consensus 119 gM~~VtF~ni~F~~~~-~--~~g~~f~~~t~~~~hgC~F~gf-~g~cl~~------------~~~~~VrGC~F~~C~~gi 182 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRD-T--FSGVVFHANTNTLFHGCSFFGF-HGTCLES------------WAGGEVRGCTFYGCWKGI 182 (386)
T ss_pred eeeeeEEEEEEEecCC-c--cceeEEEecceEEEEeeEEecC-cceeEEE------------cCCcEEeeeEEEEEEEEe
Confidence 3467888888888754 1 2356666778888888888753 2445554 244677788876533444
No 50
>PLN02432 putative pectinesterase
Probab=85.24 E-value=29 Score=31.53 Aligned_cols=109 Identities=15% Similarity=0.132 Sum_probs=60.5
Q ss_pred eeeeEEEEeEEEEcCCCC-CCCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCce
Q 023585 42 YCSNVVIRYVTILAPADS-PNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 120 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~-~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~g 120 (280)
..+++.++||+|.|.... .-.-.+.+ ..+++.+.+|.|...-|-+-...+ .-.++||++.+. -=
T Consensus 92 ~a~~f~a~nlt~~Nt~g~~~QAvAl~v-~gDr~~f~~c~~~G~QDTLy~~~g-------------r~yf~~c~I~G~-VD 156 (293)
T PLN02432 92 LASDFVGRFLTIQNTFGSSGKAVALRV-AGDRAAFYGCRILSYQDTLLDDTG-------------RHYYRNCYIEGA-TD 156 (293)
T ss_pred ECCCeEEEeeEEEeCCCCCCceEEEEE-cCCcEEEEcceEecccceeEECCC-------------CEEEEeCEEEec-cc
Confidence 446777888888875321 11112233 367777888887776666544332 357778887763 33
Q ss_pred EEEcceecCCEEeEEEEeeEEEeeC--cEEEEEEEcC-CCceEEEEEEEeEEEcc
Q 023585 121 IAVGSETSGGVENVLAEHINLYNVG--VGIHVKTNIG-RGGFIRNITVSDVYMEN 172 (280)
Q Consensus 121 i~Igs~~~g~i~nI~~~n~~i~~~~--~gi~Iks~~g-~~g~v~nV~f~ni~~~~ 172 (280)
+-+|. -...|++|++.... .| .|..... ....-....|.|+++..
T Consensus 157 FIFG~------g~a~Fe~c~i~s~~~~~g-~itA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 157 FICGN------AASLFEKCHLHSLSPNNG-AITAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred EEecC------ceEEEEeeEEEEecCCCC-eEEecCCCCCCCCceEEEEeeEEcc
Confidence 44443 34677778776432 13 3332210 11222357788888875
No 51
>PLN02634 probable pectinesterase
Probab=85.24 E-value=27 Score=32.73 Aligned_cols=110 Identities=8% Similarity=0.047 Sum_probs=64.3
Q ss_pred eeeeEEEEeEEEEcCCCC-------CCCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEE
Q 023585 42 YCSNVVIRYVTILAPADS-------PNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTG 114 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~-------~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~ 114 (280)
..+++..+|++|.|.... .-.-.+.+ .++++.+.+|.|...-|-+-... -.-.++||++
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v-~gDra~f~~C~f~G~QDTL~~~~-------------gR~yf~~CyI 212 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRI-SGDKAFFFGCGFYGAQDTLCDDA-------------GRHYFKECYI 212 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEe-cCCcEEEEEeEEecccceeeeCC-------------CCEEEEeeEE
Confidence 356778888888886411 01112333 36788888888887777765433 2367888888
Q ss_pred eCCCceEEEcceecCCEEeEEEEeeEEEeeCcE-EEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 115 SSPFSGIAVGSETSGGVENVLAEHINLYNVGVG-IHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 115 ~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~g-i~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
.+. -=+-+|. -...|+||++...... -.|.. .++ ...-....|.|+++...
T Consensus 213 eG~-VDFIFG~------g~a~Fe~C~I~s~~~~~g~ITA-~~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 213 EGS-IDFIFGN------GRSMYKDCELHSIASRFGSIAA-HGRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred ccc-ccEEcCC------ceEEEeccEEEEecCCCcEEEe-CCCCCCCCCcEEEEEcCEEcCC
Confidence 763 3344443 3457888888754321 12322 221 12235678888888763
No 52
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=85.08 E-value=37 Score=32.52 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=86.4
Q ss_pred EEeeecEEEEeEEEecCCCc----------EEEeeeeeeEEEEeEEEEcCCCCCCC------CeeeCCCCccEEEEeeEE
Q 023585 17 FMNSRSIIISNVIFQNSPFW----------NIHPVYCSNVVIRYVTILAPADSPNT------DGIDPDSSSNVCIEDSYI 80 (280)
Q Consensus 17 ~~~~~nv~I~gi~i~ns~~~----------~i~~~~~~nv~I~nv~I~~~~~~~nt------DGid~~~s~nV~I~n~~i 80 (280)
....+++..++|+|+|+... .+.+ ..+.+.+.+|+|.+..|-.-. .+..........+++|+|
T Consensus 202 ~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv-~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyI 280 (422)
T PRK10531 202 WSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRT-DGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYI 280 (422)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE-cCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEE
Confidence 34689999999999998532 2333 368899999999986541100 011111234689999999
Q ss_pred EcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCc-----e-EEEcceecCCEEeEEEEeeEEEeeCc-EEEEE-E
Q 023585 81 STGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS-----G-IAVGSETSGGVENVLAEHINLYNVGV-GIHVK-T 152 (280)
Q Consensus 81 ~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~-----g-i~Igs~~~g~i~nI~~~n~~i~~~~~-gi~Ik-s 152 (280)
.-.=|=| .| .-..+++||.+..... | |.-.+-....-.-..|.||++..... ..+++ .
T Consensus 281 eG~VDFI---FG-----------~g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~g~~~~yLGRp 346 (422)
T PRK10531 281 EGDVDFV---FG-----------RGAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNASGDGVAQLGRA 346 (422)
T ss_pred eecccEE---cc-----------CceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecCCCCCeeccCC
Confidence 8654554 22 2457899999876321 2 11111112234568999999987432 23333 2
Q ss_pred EcCC---------CceEEEEEEEeEEEcccCee
Q 023585 153 NIGR---------GGFIRNITVSDVYMENARKG 176 (280)
Q Consensus 153 ~~g~---------~g~v~nV~f~ni~~~~~~~~ 176 (280)
|... ......|+|.+..|...-.|
T Consensus 347 W~~~s~~~~y~~~~~~~arvV~~~s~i~~~I~p 379 (422)
T PRK10531 347 WDVDAGLSAYVNGANTNGQVVIRDSAINEGFNT 379 (422)
T ss_pred CcccccccccccccCCcceEEEEeCcccceeCc
Confidence 3111 11246799999998876443
No 53
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=84.91 E-value=1.4 Score=27.59 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=11.3
Q ss_pred eeCCCCccEEEEeeEEEcCCceEEEe
Q 023585 65 IDPDSSSNVCIEDSYISTGDDLVAVK 90 (280)
Q Consensus 65 id~~~s~nV~I~n~~i~~gDD~iaik 90 (280)
|.+..+.+.+|++..+....|+|.+.
T Consensus 2 I~l~~s~~~~i~~N~i~~~~~GI~~~ 27 (44)
T TIGR03804 2 IYLESSSNNTLENNTASNNSYGIYLT 27 (44)
T ss_pred EEEEecCCCEEECcEEeCCCCEEEEE
Confidence 33444444444444444444444443
No 54
>PLN02916 pectinesterase family protein
Probab=84.36 E-value=36 Score=33.34 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=56.4
Q ss_pred eeeEEEEeEEEEcCCCCCCCC--eeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCce
Q 023585 43 CSNVVIRYVTILAPADSPNTD--GIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 120 (280)
Q Consensus 43 ~~nv~I~nv~I~~~~~~~ntD--Gid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~g 120 (280)
.+++..+|++|.|........ .+.+ .++...+.+|.|...-|-+-..++ .-.+++|++.+. -=
T Consensus 276 ~~~F~A~nitf~Ntag~~~~QAVALrv-~~D~a~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~Gt-VD 340 (502)
T PLN02916 276 GDGFWARDITFENTAGPHKHQAVALRV-SSDLSVFYRCSFKGYQDTLFVHSL-------------RQFYRDCHIYGT-ID 340 (502)
T ss_pred CCCEEEEeeEEEeCCCCCCCceEEEEE-cCCcEEEEeeeEeccCceeEeCCC-------------CEEEEecEEecc-cc
Confidence 456666777777653221112 2222 356667777777666666544332 246677777653 22
Q ss_pred EEEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 121 IAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 121 i~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
+-+|. ....|+||++.-... .-.|... ++ ...-..+.|.|+++...
T Consensus 341 FIFG~------a~avFq~C~I~~~~~~~~~~g~ITAq-~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 341 FIFGD------AAVVFQNCDIFVRRPMDHQGNMITAQ-GRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred eeccC------ceEEEecCEEEEecCCCCCcceEEec-CCCCCCCCcEEEEEeeEEecC
Confidence 33432 456677777754311 1233221 11 12335677888887764
No 55
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=83.85 E-value=5.5 Score=37.43 Aligned_cols=102 Identities=10% Similarity=0.055 Sum_probs=54.3
Q ss_pred eeecEEEEeEEEecCC-CcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccC
Q 023585 19 NSRSIIISNVIFQNSP-FWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYG 97 (280)
Q Consensus 19 ~~~nv~I~gi~i~ns~-~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g 97 (280)
+-.++++.++.+...+ +-++-+..-.++++.++.+.+-. ...++. -....|++|.|..---+ +.+
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~----g~cl~~--~~~~~VrGC~F~~C~~g--i~~------ 184 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFH----GTCLES--WAGGEVRGCTFYGCWKG--IVS------ 184 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCc----ceeEEE--cCCcEEeeeEEEEEEEE--eec------
Confidence 3445666666666655 45555666667777777776632 122333 35667777777553222 222
Q ss_pred cccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeE
Q 023585 98 IAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHIN 140 (280)
Q Consensus 98 ~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~ 140 (280)
.+...+.|++|+|. ..-|.|-+++...+++=.+.||.
T Consensus 185 ----~~~~~lsVk~C~Fe--kC~igi~s~G~~~i~hn~~~ec~ 221 (386)
T PF01696_consen 185 ----RGKSKLSVKKCVFE--KCVIGIVSEGPARIRHNCASECG 221 (386)
T ss_pred ----CCcceEEeeheeee--heEEEEEecCCeEEecceecccc
Confidence 13556677777774 23444544444444444444443
No 56
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=83.69 E-value=14 Score=33.63 Aligned_cols=110 Identities=6% Similarity=0.018 Sum_probs=45.8
Q ss_pred eeeEEEEeEEEEcCCCCC--CCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCce
Q 023585 43 CSNVVIRYVTILAPADSP--NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 120 (280)
Q Consensus 43 ~~nv~I~nv~I~~~~~~~--ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~g 120 (280)
.+++.++|++|.|..... -.-.+.+ .++++.+.+|.|...-|-+-... ....++||++.+ .-=
T Consensus 86 a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~-------------~r~y~~~c~IeG-~vD 150 (298)
T PF01095_consen 86 ADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANG-------------GRQYFKNCYIEG-NVD 150 (298)
T ss_dssp STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-S-------------SEEEEES-EEEE-SEE
T ss_pred ccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeecc-------------ceeEEEeeEEEe-cCc
Confidence 456666666666643110 1112233 24566666666666555554332 234566666665 233
Q ss_pred EEEcceecCCEEeEEEEeeEEEeeC----cEEEEEEEc-CCCceEEEEEEEeEEEccc
Q 023585 121 IAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNI-GRGGFIRNITVSDVYMENA 173 (280)
Q Consensus 121 i~Igs~~~g~i~nI~~~n~~i~~~~----~gi~Iks~~-g~~g~v~nV~f~ni~~~~~ 173 (280)
+-+|. ....|++|++.... .+..|.... .....-....|.|+++...
T Consensus 151 FIfG~------~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 151 FIFGN------GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp EEEES------SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred EEECC------eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 44443 23456666665421 112333211 0112234556777777654
No 57
>PLN02665 pectinesterase family protein
Probab=83.27 E-value=41 Score=31.62 Aligned_cols=115 Identities=12% Similarity=0.054 Sum_probs=70.5
Q ss_pred EEeeeeeeEEEEeEEEEcCCCC-------CCCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEE
Q 023585 38 IHPVYCSNVVIRYVTILAPADS-------PNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIR 110 (280)
Q Consensus 38 i~~~~~~nv~I~nv~I~~~~~~-------~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~ 110 (280)
.....++++..+|++|.|.... .-.-.+.+ ..+++.+.||.|...-|-+-...+ .-.++
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v-~gDka~f~~C~f~G~QDTL~~~~g-------------r~yf~ 213 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI-SGDKAAFYNCRFIGFQDTLCDDKG-------------RHFFK 213 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE-cCCcEEEEcceeccccceeEeCCC-------------CEEEE
Confidence 3344578899999999996421 01122333 368899999999887777654332 36788
Q ss_pred eEEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCcE--EEEEEEcCC--CceEEEEEEEeEEEcccC
Q 023585 111 RVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVG--IHVKTNIGR--GGFIRNITVSDVYMENAR 174 (280)
Q Consensus 111 n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~g--i~Iks~~g~--~g~v~nV~f~ni~~~~~~ 174 (280)
||++.+. -=+-+|. -...|++|++.....+ -.|... ++ ...-....|.|+++....
T Consensus 214 ~CyIeG~-VDFIFG~------g~a~fe~C~i~s~~~~~~g~ITA~-~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 214 DCYIEGT-VDFIFGS------GKSLYLNTELHVVGDGGLRVITAQ-ARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred eeEEeec-cceeccc------cceeeEccEEEEecCCCcEEEEcC-CCCCCCCCceEEEEeeEEecCC
Confidence 9998774 3344443 3567888888765443 223221 11 112345679999988754
No 58
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=83.10 E-value=51 Score=32.79 Aligned_cols=143 Identities=10% Similarity=0.052 Sum_probs=88.6
Q ss_pred eeEEEEeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceE
Q 023585 13 NLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLV 87 (280)
Q Consensus 13 ~~i~~~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~i 87 (280)
..+. ...+++..++|+|+|... -.+-+. ..+.+.+.+|.|.+-. |-+-.. +.+-..++|+|...=|=|
T Consensus 323 aT~~-v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtVDFI 395 (553)
T PLN02708 323 ATVG-VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQ-----DTLYAH-SLRQFYKSCRIQGNVDFI 395 (553)
T ss_pred EEEE-EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeecc-----ccceeC-CCceEEEeeEEeecCCEE
Confidence 3344 458899999999999753 233332 4688999999999965 334333 345688999998765554
Q ss_pred EEecCCCccCcccCCCeecEEEEeEEEeCC----------CceEEEcc-eecCCEEeEEEEeeEEEeeCcEE--------
Q 023585 88 AVKSGWDEYGIAYGHPSSGITIRRVTGSSP----------FSGIAVGS-ETSGGVENVLAEHINLYNVGVGI-------- 148 (280)
Q Consensus 88 aiksg~~~~g~~~~~~~~nI~I~n~~~~~~----------~~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi-------- 148 (280)
+ | .-...++||.+... ...|..-+ .....-.-+.|.||++.....-+
T Consensus 396 -F--G-----------~a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~ 461 (553)
T PLN02708 396 -F--G-----------NSAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGTEEYMKLYRSNPK 461 (553)
T ss_pred -e--c-----------CceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecCCccccccccccc
Confidence 2 2 24588999998742 13343322 12234467999999997643211
Q ss_pred EEEEEcCCC-ceEEEEEEEeEEEcccCee
Q 023585 149 HVKTNIGRG-GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 149 ~Iks~~g~~-g~v~nV~f~ni~~~~~~~~ 176 (280)
.-+++-|+. ..-..+.|-+..|.+.-.|
T Consensus 462 ~~~~yLGRPW~~ysr~V~~~s~l~~~I~p 490 (553)
T PLN02708 462 VHKNFLGRPWKEYSRTVFIGCNLEALITP 490 (553)
T ss_pred ccceeeecCCCCcceEEEEecccCCeEcC
Confidence 012222322 3456778888887765333
No 59
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=83.02 E-value=23 Score=32.13 Aligned_cols=25 Identities=12% Similarity=0.318 Sum_probs=15.5
Q ss_pred EEEcceecCCEEeEEEEeeEEEeeC
Q 023585 121 IAVGSETSGGVENVLAEHINLYNVG 145 (280)
Q Consensus 121 i~Igs~~~g~i~nI~~~n~~i~~~~ 145 (280)
|-||.....-++|+++.|+++....
T Consensus 140 iyiggk~prvmrnl~id~itv~~an 164 (464)
T PRK10123 140 IYIGGKNKRVMRNLTIDNLTVSHAN 164 (464)
T ss_pred EEEcCCCchhhhccEEccEEEeecc
Confidence 3344443445778888888877654
No 60
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=82.95 E-value=44 Score=32.99 Aligned_cols=112 Identities=13% Similarity=0.116 Sum_probs=61.9
Q ss_pred eeeeeEEEEeEEEEcCCCCCC--CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCC
Q 023585 41 VYCSNVVIRYVTILAPADSPN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 118 (280)
Q Consensus 41 ~~~~nv~I~nv~I~~~~~~~n--tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~ 118 (280)
...+++..+|++|.|...... .-.+.+ .++.+.+.+|.|...-|-+-..++ .-.+++|++.|.
T Consensus 310 v~~~~F~a~nitf~Ntag~~~~QAVALrv-~gDr~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~Gt- 374 (529)
T PLN02170 310 AMGDGFIARDITFVNSAGPNSEQAVALRV-GSDKSVVYRCSVEGYQDSLYTHSK-------------RQFYRETDITGT- 374 (529)
T ss_pred EEcCCeEEEeeEEEecCCCCCCceEEEEe-cCCcEEEEeeeEeccCCcceeCCC-------------CEEEEeeEEccc-
Confidence 345677777777777542111 122333 357777777777776666544332 246677777663
Q ss_pred ceEEEcceecCCEEeEEEEeeEEEeeCc---EEEEEEEcCC--CceEEEEEEEeEEEcccC
Q 023585 119 SGIAVGSETSGGVENVLAEHINLYNVGV---GIHVKTNIGR--GGFIRNITVSDVYMENAR 174 (280)
Q Consensus 119 ~gi~Igs~~~g~i~nI~~~n~~i~~~~~---gi~Iks~~g~--~g~v~nV~f~ni~~~~~~ 174 (280)
-=+-+|. -...|+||++.-... .-.|... ++ ...-..+.|.|+++....
T Consensus 375 VDFIFG~------a~avFq~C~I~~~~~~~~~g~ITAq-~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 375 VDFIFGN------SAVVFQSCNIAARKPSGDRNYVTAQ-GRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred cceeccc------ceEEEeccEEEEecCCCCceEEEec-CCCCCCCCceEEEEeeEEecCC
Confidence 2233442 456778888765321 1233221 21 123356778888887643
No 61
>PLN02671 pectinesterase
Probab=82.29 E-value=44 Score=31.31 Aligned_cols=111 Identities=5% Similarity=0.001 Sum_probs=62.5
Q ss_pred eeeeeEEEEeEEEEcCCCC----C--CCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEE
Q 023585 41 VYCSNVVIRYVTILAPADS----P--NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTG 114 (280)
Q Consensus 41 ~~~~nv~I~nv~I~~~~~~----~--ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~ 114 (280)
...+++..+|++|.|.... . -.-.+.+ .++++.+.+|.|...-|-+-...+ .-.++||++
T Consensus 151 v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv-~gDra~f~~c~f~G~QDTLy~~~g-------------R~yf~~CyI 216 (359)
T PLN02671 151 IESDYFCATGITFENTVVAEPGGQGMQAVALRI-SGDKAFFYKVRVLGAQDTLLDETG-------------SHYFYQCYI 216 (359)
T ss_pred EECCceEEEeeEEEcCCCCCCCCCCccEEEEEE-cCccEEEEcceEeccccccEeCCC-------------cEEEEecEE
Confidence 3456777778888876311 1 1122333 367888888888776666543332 257788888
Q ss_pred eCCCceEEEcceecCCEEeEEEEeeEEEeeCc-EEEEEEEc-CCCceEEEEEEEeEEEcc
Q 023585 115 SSPFSGIAVGSETSGGVENVLAEHINLYNVGV-GIHVKTNI-GRGGFIRNITVSDVYMEN 172 (280)
Q Consensus 115 ~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~-gi~Iks~~-g~~g~v~nV~f~ni~~~~ 172 (280)
.+. -=+-+|. -...|++|++..... .-.|.... .....-....|.|+++..
T Consensus 217 eG~-VDFIFG~------g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg 269 (359)
T PLN02671 217 QGS-VDFIFGN------AKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVING 269 (359)
T ss_pred EEe-ccEEecc------eeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEcc
Confidence 763 3343443 357788888865321 11333221 011223467788888875
No 62
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=82.12 E-value=34 Score=34.11 Aligned_cols=109 Identities=14% Similarity=0.096 Sum_probs=54.0
Q ss_pred eeeEEEEeEEEEcCCCCCCCCe--eeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCce
Q 023585 43 CSNVVIRYVTILAPADSPNTDG--IDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 120 (280)
Q Consensus 43 ~~nv~I~nv~I~~~~~~~ntDG--id~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~g 120 (280)
.+++..+|++|.|......... +.+ .++...+.+|.|...-|-+-..++ .-.+++|++.|. -=
T Consensus 339 ~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt-VD 403 (566)
T PLN02713 339 GQNFVAVNITFRNTAGPAKHQAVALRS-GADLSTFYSCSFEAYQDTLYTHSL-------------RQFYRECDIYGT-VD 403 (566)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEeeeeccCCcceEECCC-------------CEEEEeeEEecc-cc
Confidence 4666666666666432111112 222 356666666666665555443332 246666666653 22
Q ss_pred EEEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 121 IAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 121 i~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
+-+|. -...|+||++.-... .-.|... ++ ...-..+.|.|+++...
T Consensus 404 FIFG~------a~avfq~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 404 FIFGN------AAVVFQNCNLYPRLPMQGQFNTITAQ-GRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred eeccc------ceEEEeccEEEEecCCCCCcceeeec-CCCCCCCCCEEEEEcCEEecC
Confidence 33332 456677777754310 0122221 11 12234677888877654
No 63
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=81.73 E-value=2.2 Score=26.67 Aligned_cols=41 Identities=24% Similarity=0.126 Sum_probs=30.3
Q ss_pred EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEc
Q 023585 37 NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST 82 (280)
Q Consensus 37 ~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~ 82 (280)
+|.+..+.+.+|++-++... .|||.+..+.+-+|++..+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~-----~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN-----SYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCC-----CCEEEEEeCCCCEeECCEEEc
Confidence 36677778788888888774 378888877777777777653
No 64
>PLN02497 probable pectinesterase
Probab=81.01 E-value=46 Score=30.82 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=64.0
Q ss_pred eeeeeEEEEeEEEEcCCCCC-------C--CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEe
Q 023585 41 VYCSNVVIRYVTILAPADSP-------N--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRR 111 (280)
Q Consensus 41 ~~~~nv~I~nv~I~~~~~~~-------n--tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n 111 (280)
...+++..+|++|.|....+ . .-.+.+ ..+++.+.||.|...-|-+-... -.-.++|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v-~gDr~~fy~C~f~G~QDTLy~~~-------------gRqyf~~ 177 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMI-GGDKSAFYSCGFAGVQDTLWDSD-------------GRHYFKR 177 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEe-cCCcEEEEeeEEeccccceeeCC-------------CcEEEEe
Confidence 34677888888888864211 0 112223 36788888888877767654332 2357788
Q ss_pred EEEeCCCceEEEcceecCCEEeEEEEeeEEEeeCc------EEEEEEEc-CCCceEEEEEEEeEEEccc
Q 023585 112 VTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGV------GIHVKTNI-GRGGFIRNITVSDVYMENA 173 (280)
Q Consensus 112 ~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~------gi~Iks~~-g~~g~v~nV~f~ni~~~~~ 173 (280)
|++.+. -=+-+|. -...|+||++..... .-.|.... .....-....|.|+++...
T Consensus 178 C~IeG~-VDFIFG~------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 178 CTIQGA-VDFIFGS------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred CEEEec-ccEEccC------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 888763 3344443 457788888864321 12333221 0112334667888888763
No 65
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=80.94 E-value=45 Score=33.09 Aligned_cols=110 Identities=12% Similarity=0.077 Sum_probs=59.6
Q ss_pred eeeeEEEEeEEEEcCCCCCCCC--eeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCc
Q 023585 42 YCSNVVIRYVTILAPADSPNTD--GIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 119 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~~ntD--Gid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~ 119 (280)
..+++..+|++|.|........ .+.+ .++...+.+|.|...-|-+-..++ .-.++||++.|. -
T Consensus 321 ~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt-V 385 (548)
T PLN02301 321 VGDGFIAQDIWFQNTAGPEKHQAVALRV-SADQAVINRCRIDAYQDTLYAHSL-------------RQFYRDSYITGT-V 385 (548)
T ss_pred ECCceEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeeeeeccccceecCC-------------cEEEEeeEEEec-c
Confidence 3466777777777754211112 2233 357777777777776666544432 246777777663 2
Q ss_pred eEEEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 120 GIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 120 gi~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
=+-+|. -...|+||++.-... .-.|.. .++ ...-..+.|.|+++...
T Consensus 386 DFIFG~------a~avfq~c~i~~~~~~~~~~~~iTA-qgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 386 DFIFGN------AAVVFQNCKIVARKPMAGQKNMVTA-QGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred ceeccc------ceeEEeccEEEEecCCCCCCceEEe-cCCCCCCCCCEEEEEeeEEecC
Confidence 233432 456777777764321 012222 121 12345777888888764
No 66
>PLN02176 putative pectinesterase
Probab=80.91 E-value=48 Score=30.83 Aligned_cols=110 Identities=16% Similarity=0.067 Sum_probs=66.2
Q ss_pred eeeeEEEEeEEEEcCCCC-CC-------CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEE
Q 023585 42 YCSNVVIRYVTILAPADS-PN-------TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVT 113 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~-~n-------tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~ 113 (280)
..+++..+|++|.|.... .+ .-.+.+ ..+++.+.+|.|...-|-+-... -.-.+++|+
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v-~gDr~~f~~C~f~G~QDTLy~~~-------------gRqyf~~Cy 185 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARM-LGDKYAIIDSSFDGFQDTLFDGK-------------GRHYYKRCV 185 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEe-cCccEEEEccEEecccceeEeCC-------------cCEEEEecE
Confidence 468888899999886421 01 112333 36888888888887777765433 236788888
Q ss_pred EeCCCceEEEcceecCCEEeEEEEeeEEEeeCc-------EEEEEEEcCCC--ceEEEEEEEeEEEccc
Q 023585 114 GSSPFSGIAVGSETSGGVENVLAEHINLYNVGV-------GIHVKTNIGRG--GFIRNITVSDVYMENA 173 (280)
Q Consensus 114 ~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~-------gi~Iks~~g~~--g~v~nV~f~ni~~~~~ 173 (280)
+.+. -=+-+|. ....|+||++.-... .-.|... ++. ..-....|.|+++...
T Consensus 186 IeG~-VDFIFG~------a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~-~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 186 ISGG-IDFIFGY------AQSIFEGCTLKLTLGIYPPNEPYGTITAQ-GRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred EEec-ccEEecC------ceEEEeccEEEEecccCCCCCCcEEEEeC-CCCCCCCCcEEEEECCEEccC
Confidence 8774 2333443 457888888874311 1123321 111 2234677889988763
No 67
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=80.82 E-value=51 Score=32.54 Aligned_cols=111 Identities=13% Similarity=0.110 Sum_probs=59.3
Q ss_pred eeeeEEEEeEEEEcCCCCCCCCeeeCC-CCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCce
Q 023585 42 YCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 120 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~~ntDGid~~-~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~g 120 (280)
..+++..+|++|.|.........+-+. .++++.+.+|.|...-|-+-..++ .-.+++|++.|. -=
T Consensus 303 ~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~IeGt-VD 368 (530)
T PLN02933 303 KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA-------------KQFYRECDIYGT-ID 368 (530)
T ss_pred ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC-------------ceEEEeeEEecc-cc
Confidence 346677777777775421111222221 357777777777766666543332 236777777663 33
Q ss_pred EEEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 121 IAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 121 i~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
+-+|. ....|+||++.-... .-.|... ++ ...-..+.|.|+++...
T Consensus 369 FIFG~------a~avFq~C~i~~~~~~~~~~~~iTAq-~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 369 FIFGN------AAVVFQNCSLYARKPNPNHKIAFTAQ-SRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred eeccC------ceEEEeccEEEEeccCCCCceEEEec-CCCCCCCCceEEEEeeEEecC
Confidence 44443 346777777754321 1123222 21 12234677888888764
No 68
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=80.77 E-value=61 Score=31.96 Aligned_cols=111 Identities=9% Similarity=0.066 Sum_probs=62.1
Q ss_pred eeeeeEEEEeEEEEcCCCCCCCC--eeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCC
Q 023585 41 VYCSNVVIRYVTILAPADSPNTD--GIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 118 (280)
Q Consensus 41 ~~~~nv~I~nv~I~~~~~~~ntD--Gid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~ 118 (280)
...+++..+|++|.|........ .+.+ .++...+.+|.|...-|-+-..++ .-.+++|++.|.
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~Gt- 354 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRS-DSDLSVFYRCAMRGYQDTLYTHTM-------------RQFYRECRITGT- 354 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEE-cCCcEEEEeeeeeccCCeeEeCCC-------------CEEEEeeEEeec-
Confidence 34567777778877764321212 2233 357777778887776666554432 246677887763
Q ss_pred ceEEEcceecCCEEeEEEEeeEEEeeC----cEEEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 119 SGIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 119 ~gi~Igs~~~g~i~nI~~~n~~i~~~~----~gi~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
-=+-+|. -...|+||++.-.. ..-.|... ++ ...-....|.|+++...
T Consensus 355 VDFIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 355 VDFIFGD------ATAVFQNCQILAKKGLPNQKNTITAQ-GRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred ccEEecC------ceEEEEccEEEEecCCCCCCceEEec-CCCCCCCCcEEEEEeeEEecC
Confidence 3344443 45778888876531 01123322 21 12334677888888753
No 69
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=80.73 E-value=54 Score=32.93 Aligned_cols=110 Identities=9% Similarity=0.053 Sum_probs=63.9
Q ss_pred eeeeEEEEeEEEEcCCCCC--CCCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCc
Q 023585 42 YCSNVVIRYVTILAPADSP--NTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 119 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~~--ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~ 119 (280)
..+++..+|++|.|..... -.-.+.+ .++...+.+|.|...-|-+-..+ ..-.++||++.|.-+
T Consensus 370 ~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD 435 (596)
T PLN02745 370 LGEGFMAKSMGFRNTAGPEKHQAVAIRV-QSDRSIFLNCRFEGYQDTLYAQT-------------HRQFYRSCVITGTID 435 (596)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEE-cCCcEEEEeeEEeecccccccCC-------------CcEEEEeeEEEeecc
Confidence 4567778888888754211 1122333 36788888888877666654333 235778888876422
Q ss_pred eEEEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 120 GIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 120 gi~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
+-+|. -...|+||++.-... .-.|.. +++ ...-..+.|.|+++...
T Consensus 436 -FIFG~------a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 436 -FIFGD------AAAIFQNCLIFVRKPLPNQQNTVTA-QGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred -EEecc------eeEEEEecEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEeeEEecC
Confidence 55553 567788888764310 112322 221 12345778888888764
No 70
>PLN02665 pectinesterase family protein
Probab=80.70 E-value=46 Score=31.27 Aligned_cols=135 Identities=13% Similarity=0.100 Sum_probs=86.5
Q ss_pred EEeeecEEEEeEEEecCCC---------c--EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCc
Q 023585 17 FMNSRSIIISNVIFQNSPF---------W--NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 85 (280)
Q Consensus 17 ~~~~~nv~I~gi~i~ns~~---------~--~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD 85 (280)
...++++..++|+++|... - .+.+. .+...+.+|++.+.. |-+-.. ..+-..+||+|.-.=|
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~-gDka~f~~C~f~G~Q-----DTL~~~-~gr~yf~~CyIeG~VD 222 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRIS-GDKAAFYNCRFIGFQ-----DTLCDD-KGRHFFKDCYIEGTVD 222 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEc-CCcEEEEcceecccc-----ceeEeC-CCCEEEEeeEEeeccc
Confidence 3558999999999999642 2 24444 588999999999865 333332 3467899999987655
Q ss_pred eEEEecCCCccCcccCCCeecEEEEeEEEeCCCce----EEEcce-ecCCEEeEEEEeeEEEeeCcEEEEE-EEcCCCce
Q 023585 86 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG----IAVGSE-TSGGVENVLAEHINLYNVGVGIHVK-TNIGRGGF 159 (280)
Q Consensus 86 ~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~g----i~Igs~-~~g~i~nI~~~n~~i~~~~~gi~Ik-s~~g~~g~ 159 (280)
=| .+ .-...+++|.+.....+ |.--+- ....-.-..|.||++......+.++ .| +.
T Consensus 223 FI-FG-------------~g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGRpW----~~ 284 (366)
T PLN02665 223 FI-FG-------------SGKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAW----MS 284 (366)
T ss_pred ee-cc-------------ccceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecCCC----CC
Confidence 54 22 23468899998754332 222111 1123356789999998754233333 22 34
Q ss_pred EEEEEEEeEEEcccCee
Q 023585 160 IRNITVSDVYMENARKG 176 (280)
Q Consensus 160 v~nV~f~ni~~~~~~~~ 176 (280)
-..|.|.+..|.+.-.|
T Consensus 285 ysrvVf~~t~m~~~I~p 301 (366)
T PLN02665 285 RPRVVFAYTEMSSVVNP 301 (366)
T ss_pred cceEEEEccccCCeEcc
Confidence 56889999988875444
No 71
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=80.44 E-value=15 Score=33.99 Aligned_cols=63 Identities=17% Similarity=0.058 Sum_probs=42.2
Q ss_pred eeEEEEeeecEEEEeEEEecC-------CCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEE
Q 023585 13 NLIEFMNSRSIIISNVIFQNS-------PFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYI 80 (280)
Q Consensus 13 ~~i~~~~~~nv~I~gi~i~ns-------~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i 80 (280)
--|.+.++.++.|++.++.-- ..-+|+++++.+..|.+-.|.= -.|||-..-|++-.+++-.+
T Consensus 121 ~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy-----~rDgIy~~~S~~~~~~gnr~ 190 (408)
T COG3420 121 FGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISY-----GRDGIYSDTSQHNVFKGNRF 190 (408)
T ss_pred eEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCcccc-----ccceEEEcccccceecccch
Confidence 357788899999999888632 2356888888887776655433 34777666666655555443
No 72
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=80.37 E-value=32 Score=31.29 Aligned_cols=141 Identities=11% Similarity=0.137 Sum_probs=80.8
Q ss_pred CCeeEEEEeeecEEEEeEEEecCCC------cEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCC
Q 023585 11 RPNLIEFMNSRSIIISNVIFQNSPF------WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGD 84 (280)
Q Consensus 11 rP~~i~~~~~~nv~I~gi~i~ns~~------~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gD 84 (280)
+...+.+ ..+++.+++|+|.|... -.+.+ ..+.+.+.+|++.+.. |-+-.. ..+..++||+|.-.-
T Consensus 78 ~saT~~v-~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~Q-----DTL~~~-~~r~y~~~c~IeG~v 149 (298)
T PF01095_consen 78 RSATFSV-NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQ-----DTLYAN-GGRQYFKNCYIEGNV 149 (298)
T ss_dssp GC-SEEE--STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-ST-----T-EEE--SSEEEEES-EEEESE
T ss_pred ccccccc-cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEcccc-----ceeeec-cceeEEEeeEEEecC
Confidence 3334444 48999999999999643 22444 4578999999999964 445544 456789999999876
Q ss_pred ceEEEecCCCccCcccCCCeecEEEEeEEEeCCC------ceEEEcc-eecCCEEeEEEEeeEEEeeC--------cEEE
Q 023585 85 DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVG--------VGIH 149 (280)
Q Consensus 85 D~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs-~~~g~i~nI~~~n~~i~~~~--------~gi~ 149 (280)
|-|- +. -...+++|.+.... ..|.-.+ .....-.-..|.||++.... ....
T Consensus 150 DFIf-G~-------------~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~y 215 (298)
T PF01095_consen 150 DFIF-GN-------------GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDSGVSPSYSDGSVY 215 (298)
T ss_dssp EEEE-ES-------------SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEESTTTCGGCCCSTEE
T ss_pred cEEE-CC-------------eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCccccccccceeEE
Confidence 6652 22 23678999987431 1233222 12234568899999998753 2233
Q ss_pred EEEEcCCCceEEEEEEEeEEEcccCee
Q 023585 150 VKTNIGRGGFIRNITVSDVYMENARKG 176 (280)
Q Consensus 150 Iks~~g~~g~v~nV~f~ni~~~~~~~~ 176 (280)
++-- -+.-..+.|.|..|.+.-.|
T Consensus 216 LGRp---W~~~s~vvf~~t~m~~~I~p 239 (298)
T PF01095_consen 216 LGRP---WGPYSRVVFINTYMDDHINP 239 (298)
T ss_dssp EE-----SSEETEEEEES-EE-TTEET
T ss_pred ecCc---ccceeeEEEEccccCCeeec
Confidence 4321 13446789999999986544
No 73
>PLN02682 pectinesterase family protein
Probab=79.69 E-value=55 Score=30.78 Aligned_cols=134 Identities=13% Similarity=0.131 Sum_probs=86.7
Q ss_pred EEeeecEEEEeEEEecCCC---------cE--EEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCc
Q 023585 17 FMNSRSIIISNVIFQNSPF---------WN--IHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 85 (280)
Q Consensus 17 ~~~~~nv~I~gi~i~ns~~---------~~--i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD 85 (280)
....+++..++|+++|+.. .. +.+ ..+...+.+|++.+..| -+-.. ..+-..+||+|.-.=|
T Consensus 159 ~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v-~gDr~~fy~C~f~G~QD-----TLy~~-~gRqyf~~C~IeG~VD 231 (369)
T PLN02682 159 AVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRI-SADTAAFYGCKFLGAQD-----TLYDH-LGRHYFKDCYIEGSVD 231 (369)
T ss_pred EEECCCeEEEeeEEEcccccCCCCCCcccEEEEEe-cCCcEEEEcceEecccc-----ceEEC-CCCEEEEeeEEccccc
Confidence 3458899999999999642 12 333 36889999999999653 33222 3567999999986655
Q ss_pred eEEEecCCCccCcccCCCeecEEEEeEEEeCCC---ceEEEcce-ecCCEEeEEEEeeEEEeeCcEEEEE-EEcCCCceE
Q 023585 86 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF---SGIAVGSE-TSGGVENVLAEHINLYNVGVGIHVK-TNIGRGGFI 160 (280)
Q Consensus 86 ~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~---~gi~Igs~-~~g~i~nI~~~n~~i~~~~~gi~Ik-s~~g~~g~v 160 (280)
=| . | .-...+++|.+..-. ..|.--+- ....-.-..|.||++.... .++++ .| ..-
T Consensus 232 FI-F--G-----------~g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRpW----~~y 292 (369)
T PLN02682 232 FI-F--G-----------NGLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGSG-ALYLGRAW----GTF 292 (369)
T ss_pred EE-e--c-----------CceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCCC-ceEeecCC----CCc
Confidence 54 2 2 245889999987421 22222221 1123457889999997742 23333 22 346
Q ss_pred EEEEEEeEEEcccCee
Q 023585 161 RNITVSDVYMENARKG 176 (280)
Q Consensus 161 ~nV~f~ni~~~~~~~~ 176 (280)
..+.|.|..|.+.-.|
T Consensus 293 arvVf~~t~m~~~I~p 308 (369)
T PLN02682 293 SRVVFAYTYMDNIIIP 308 (369)
T ss_pred ceEEEEeccCCCcCcC
Confidence 7889999998876554
No 74
>PLN02304 probable pectinesterase
Probab=79.62 E-value=56 Score=30.84 Aligned_cols=110 Identities=9% Similarity=0.042 Sum_probs=65.1
Q ss_pred eeeeEEEEeEEEEcCCCC-----CC--CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEE
Q 023585 42 YCSNVVIRYVTILAPADS-----PN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTG 114 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~-----~n--tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~ 114 (280)
..+++..+|++|.|.... .. .-.+.+ .++++.+.+|.|...-|-+-... -.-.++||++
T Consensus 160 ~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v-~gDra~fy~C~f~G~QDTLy~~~-------------gR~Yf~~CyI 225 (379)
T PLN02304 160 FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRI-AGDQAAFWGCGFFGAQDTLHDDR-------------GRHYFKDCYI 225 (379)
T ss_pred ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEe-cCCcEEEEeceEecccceeEeCC-------------CCEEEEeeEE
Confidence 357788888888886421 01 112233 36888888888888777765433 2367888888
Q ss_pred eCCCceEEEcceecCCEEeEEEEeeEEEeeCcE---------EEEEEEc-CCCceEEEEEEEeEEEcc
Q 023585 115 SSPFSGIAVGSETSGGVENVLAEHINLYNVGVG---------IHVKTNI-GRGGFIRNITVSDVYMEN 172 (280)
Q Consensus 115 ~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~~~g---------i~Iks~~-g~~g~v~nV~f~ni~~~~ 172 (280)
.+. -=+-+|. -...|++|++...... -.|.... .....-....|.|+++..
T Consensus 226 eG~-VDFIFG~------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 226 QGS-IDFIFGD------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred ccc-ccEEecc------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEcc
Confidence 763 3344553 4567888888754221 1333221 111233466688888875
No 75
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=77.97 E-value=43 Score=34.02 Aligned_cols=46 Identities=7% Similarity=0.034 Sum_probs=20.7
Q ss_pred eeeEEEEeEEEEcCCCCCCCCeeeCC-CCccEEEEeeEEEcCCceEE
Q 023585 43 CSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVA 88 (280)
Q Consensus 43 ~~nv~I~nv~I~~~~~~~ntDGid~~-~s~nV~I~n~~i~~gDD~ia 88 (280)
.+++..+|++|.|.........+-+. .+++..+.+|.|...-|-+-
T Consensus 336 g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy 382 (670)
T PLN02217 336 GDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLY 382 (670)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhc
Confidence 34555666666654321111111111 24555666666655444443
No 76
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=77.57 E-value=72 Score=31.30 Aligned_cols=19 Identities=16% Similarity=0.086 Sum_probs=10.0
Q ss_pred CccEEEEeeEEEcCCceEE
Q 023585 70 SSNVCIEDSYISTGDDLVA 88 (280)
Q Consensus 70 s~nV~I~n~~i~~gDD~ia 88 (280)
++++.+.+|.|...-|-+-
T Consensus 297 ~D~~~fy~c~~~G~QDTLy 315 (497)
T PLN02698 297 SDHSVLYRCSIAGYQDTLY 315 (497)
T ss_pred CCcEEEEcceeecccchhe
Confidence 4555555555555444443
No 77
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=77.27 E-value=24 Score=34.93 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=61.0
Q ss_pred eeeeeeEEEEeEEEEcCCCCCC--CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCC
Q 023585 40 PVYCSNVVIRYVTILAPADSPN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP 117 (280)
Q Consensus 40 ~~~~~nv~I~nv~I~~~~~~~n--tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~ 117 (280)
....+++..+|++|.|...... .-.+.+ .++++.+.+|.|...-|-+-..++ .-.++||++.|.
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v-~~D~~~fy~C~~~G~QDTLy~~~~-------------rqyy~~C~I~Gt 380 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRV-DSDQSAFYRCSMEGYQDTLYAHSL-------------RQFYRECEIYGT 380 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEcceeecccccceecCC-------------ceEEEeeEEecc
Confidence 3445677777777777542211 222333 367777777777776666544332 246777777763
Q ss_pred CceEEEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCC--CceEEEEEEEeEEEcc
Q 023585 118 FSGIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMEN 172 (280)
Q Consensus 118 ~~gi~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~--~g~v~nV~f~ni~~~~ 172 (280)
-=+-+|. -...|+||++.-... .-.|.. .++ ...-..+.|.|+++..
T Consensus 381 -VDFIFG~------a~avfq~C~i~~r~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~ 433 (537)
T PLN02506 381 -IDFIFGN------GAAVLQNCKIYTRVPLPLQKVTITA-QGRKSPHQSTGFSIQDSYVLA 433 (537)
T ss_pred -cceEccC------ceeEEeccEEEEccCCCCCCceEEc-cCCCCCCCCcEEEEEcCEEcc
Confidence 3344443 446777887764311 123322 121 1223467788888765
No 78
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=77.02 E-value=14 Score=35.18 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=41.2
Q ss_pred CCccEEEEeeEE-EcCCceEEEecCCC--ccCcc----------cCCCeecEEEEeEEEeCCCceEEEcceec-CCEEeE
Q 023585 69 SSSNVCIEDSYI-STGDDLVAVKSGWD--EYGIA----------YGHPSSGITIRRVTGSSPFSGIAVGSETS-GGVENV 134 (280)
Q Consensus 69 ~s~nV~I~n~~i-~~gDD~iaiksg~~--~~g~~----------~~~~~~nI~I~n~~~~~~~~gi~Igs~~~-g~i~nI 134 (280)
.+-|...+|+.. .+--|++.+.+.++ ..-.| ..+--.|=.|+|+..++ +.|+-+|.... +.++||
T Consensus 262 RnYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~-~lGVG~~~DG~~~yvsni 340 (549)
T PF09251_consen 262 RNYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRG-SLGVGIGMDGKGGYVSNI 340 (549)
T ss_dssp -EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEEECCS-EEEEE
T ss_pred ceeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheec-cceeeeeecCCCceEeeE
Confidence 345666666653 45567777776422 11111 11223566789999887 77887776543 578888
Q ss_pred EEEeeEEEeeCcEEEEEEE
Q 023585 135 LAEHINLYNVGVGIHVKTN 153 (280)
Q Consensus 135 ~~~n~~i~~~~~gi~Iks~ 153 (280)
++++|. ..|+.++..
T Consensus 341 ~~~d~~----g~G~~~~~~ 355 (549)
T PF09251_consen 341 TVQDCA----GAGIFIRGT 355 (549)
T ss_dssp EEES-S----SESEEEECC
T ss_pred Eeeccc----CCceEEeec
Confidence 888873 246666653
No 79
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=76.92 E-value=56 Score=32.04 Aligned_cols=57 Identities=12% Similarity=0.071 Sum_probs=29.7
Q ss_pred eecEEEEeEEEecCCCc----E--EEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcC
Q 023585 20 SRSIIISNVIFQNSPFW----N--IHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTG 83 (280)
Q Consensus 20 ~~nv~I~gi~i~ns~~~----~--i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~g 83 (280)
.+++..++|+++|.... . +.+ ..+...+.+|.|.+-. |-+-.. ..+-..++|+|...
T Consensus 269 ~~~F~a~nitf~Ntag~~~~QAvAl~v-~~D~~~fy~c~~~G~Q-----DTLy~~-~~rqyy~~C~I~G~ 331 (497)
T PLN02698 269 GDGFIARDIGFKNAAGPKGEQAIALSI-TSDHSVLYRCSIAGYQ-----DTLYAA-ALRQFYRECDIYGT 331 (497)
T ss_pred CCCeEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEcceeeccc-----chheeC-CCcEEEEeeEEEec
Confidence 56666666666665431 1 222 2456666666666643 222222 22346666666643
No 80
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=76.38 E-value=63 Score=32.37 Aligned_cols=110 Identities=13% Similarity=0.101 Sum_probs=59.7
Q ss_pred eeeeEEEEeEEEEcCCCCCC--CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCc
Q 023585 42 YCSNVVIRYVTILAPADSPN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 119 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~~n--tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~ 119 (280)
..+++..+|++|.|...... .-.+.+ .+++..+.+|.|...-|-+-..++ .=.+++|++.|. -
T Consensus 358 ~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~Gt-V 422 (587)
T PLN02484 358 TGAGFIARDMTFENWAGPAKHQAVALRV-GADHAVVYRCNIIGYQDTLYVHSN-------------RQFFRECDIYGT-V 422 (587)
T ss_pred EcCCEEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeeEeccCcccccCCC-------------cEEEEecEEEec-c
Confidence 45667777777777542111 112333 357777777777766666543332 246777777663 2
Q ss_pred eEEEcceecCCEEeEEEEeeEEEeeC----cEEEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 120 GIAVGSETSGGVENVLAEHINLYNVG----VGIHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 120 gi~Igs~~~g~i~nI~~~n~~i~~~~----~gi~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
=+-+|. -...|+||++.-.. ..-.|... ++ ...-..+.|.|+++...
T Consensus 423 DFIFG~------a~avfq~C~i~~~~~~~~~~~~ITAq-~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 423 DFIFGN------AAVVLQNCSIYARKPMAQQKNTITAQ-NRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred ceeccc------ceeEEeccEEEEecCCCCCceEEEec-CCCCCCCCcEEEEEeeEEecC
Confidence 233432 45677888876431 11233321 21 12345778888888754
No 81
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=76.34 E-value=82 Score=30.96 Aligned_cols=111 Identities=7% Similarity=0.002 Sum_probs=59.4
Q ss_pred eeeEEEEeEEEEcCCCCCCCCeeeCC-CCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceE
Q 023585 43 CSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGI 121 (280)
Q Consensus 43 ~~nv~I~nv~I~~~~~~~ntDGid~~-~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi 121 (280)
.+++..+|++|.|.........+-+. .++...+.+|.|...-|-+-..+ ..-.+++|++.|. -=+
T Consensus 283 g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~-------------~RqyyrdC~I~Gt-VDF 348 (509)
T PLN02488 283 GDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR-------------DRQFYRECFITGT-VDF 348 (509)
T ss_pred cCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC-------------CCEEEEeeEEeec-cce
Confidence 45667777777775421111222221 35677777777776666654332 2356777777663 223
Q ss_pred EEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCC--CceEEEEEEEeEEEcccC
Q 023585 122 AVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENAR 174 (280)
Q Consensus 122 ~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~--~g~v~nV~f~ni~~~~~~ 174 (280)
-+|. -...|+||++..... .-.|... ++ ...-..+.|.|+++....
T Consensus 349 IFG~------a~avFq~C~I~sr~~~~~~~~~ITAq-~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 349 ICGN------AAAVFQFCQIVARQPMMGQSNVITAQ-SRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred Eecc------eEEEEEccEEEEecCCCCCCEEEEeC-CCCCCCCCcEEEEEeeEEecCC
Confidence 3443 567788888765321 1133322 22 122346778888887643
No 82
>PLN02671 pectinesterase
Probab=75.65 E-value=71 Score=29.93 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=85.1
Q ss_pred EEeeecEEEEeEEEecCCC----------cEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCce
Q 023585 17 FMNSRSIIISNVIFQNSPF----------WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDL 86 (280)
Q Consensus 17 ~~~~~nv~I~gi~i~ns~~----------~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~ 86 (280)
....+++..++|++.|... -.+.+. .+.+.+.+|++.+..| -+-.. ..+-..+||+|.-.=|=
T Consensus 150 ~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~-gDra~f~~c~f~G~QD-----TLy~~-~gR~yf~~CyIeG~VDF 222 (359)
T PLN02671 150 TIESDYFCATGITFENTVVAEPGGQGMQAVALRIS-GDKAFFYKVRVLGAQD-----TLLDE-TGSHYFYQCYIQGSVDF 222 (359)
T ss_pred EEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEc-CccEEEEcceEecccc-----ccEeC-CCcEEEEecEEEEeccE
Confidence 3457899999999999831 124444 6889999999998653 23222 34578999999866555
Q ss_pred EEEecCCCccCcccCCCeecEEEEeEEEeCCC---ceEEEcce-ecCCEEeEEEEeeEEEeeCcEEEEE-EEcCCCceEE
Q 023585 87 VAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF---SGIAVGSE-TSGGVENVLAEHINLYNVGVGIHVK-TNIGRGGFIR 161 (280)
Q Consensus 87 iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~---~gi~Igs~-~~g~i~nI~~~n~~i~~~~~gi~Ik-s~~g~~g~v~ 161 (280)
| . | .-...+++|.+.... ..|.--+- ....-.-..|.||++.... ..+++ .| +.-.
T Consensus 223 I-F--G-----------~g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g-~vyLGRPW----~~ya 283 (359)
T PLN02671 223 I-F--G-----------NAKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGTG-KIYLGRAW----GNYS 283 (359)
T ss_pred E-e--c-----------ceeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccCc-cEEEeCCC----CCCc
Confidence 4 2 2 234889999987531 22332221 1123356899999997642 23333 22 3346
Q ss_pred EEEEEeEEEcccCee
Q 023585 162 NITVSDVYMENARKG 176 (280)
Q Consensus 162 nV~f~ni~~~~~~~~ 176 (280)
.+.|.|..|.+.-.|
T Consensus 284 rvVf~~t~m~~~I~p 298 (359)
T PLN02671 284 RTVYSNCFIADIITP 298 (359)
T ss_pred eEEEEecccCCeEcC
Confidence 888999888875444
No 83
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=75.07 E-value=78 Score=31.59 Aligned_cols=111 Identities=11% Similarity=0.088 Sum_probs=69.1
Q ss_pred eeeeeEEEEeEEEEcCCCCCCCC--eeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCC
Q 023585 41 VYCSNVVIRYVTILAPADSPNTD--GIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF 118 (280)
Q Consensus 41 ~~~~nv~I~nv~I~~~~~~~ntD--Gid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~ 118 (280)
...+++..+|++|.|........ .+.+ .++...+.+|.|...-|-+-..++ .-.++||++.|.
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gt- 406 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMS-SADLSVFYRCTMDAFQDTLYAHAQ-------------RQFYRECNIYGT- 406 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEE-cCCcEEEEEeEEEeccchhccCCC-------------ceEEEeeEEecc-
Confidence 34588999999999865321112 3333 478899999999887777654432 246889999874
Q ss_pred ceEEEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 119 SGIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 119 ~gi~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
-=+-+|. -...|+||++.-... .-.|... ++ ...-..+.|.|+++...
T Consensus 407 vDFIFG~------a~avfq~c~i~~~~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 407 VDFIFGN------SAVVFQNCNILPRRPMKGQQNTITAQ-GRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred cceeecc------ceEEEeccEEEEecCCCCCCceEEec-CCCCCCCCceEEEEccEEecC
Confidence 3344543 567888888864321 1123322 21 23345688888888864
No 84
>PLN02314 pectinesterase
Probab=74.94 E-value=68 Score=32.14 Aligned_cols=111 Identities=9% Similarity=0.059 Sum_probs=60.4
Q ss_pred eeeeEEEEeEEEEcCCCCCCCC--eeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCc
Q 023585 42 YCSNVVIRYVTILAPADSPNTD--GIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 119 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~~ntD--Gid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~ 119 (280)
..+++..+|++|.|........ .+.+ .++...+.+|.|...-|-+-..++ .-.++||++.|. -
T Consensus 363 ~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~Gt-v 427 (586)
T PLN02314 363 AGKGFIAKDMGFINTAGAAKHQAVAFRS-GSDMSVFYQCSFDAFQDTLYAHSN-------------RQFYRDCDITGT-I 427 (586)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEe-cCCcEEEEeeEEEeccchheeCCC-------------CEEEEeeEEEec-c
Confidence 4566777777777754211111 2333 357777777777766666544332 246777777663 2
Q ss_pred eEEEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCC--CceEEEEEEEeEEEcccC
Q 023585 120 GIAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENAR 174 (280)
Q Consensus 120 gi~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~--~g~v~nV~f~ni~~~~~~ 174 (280)
=+-+|. -...|+||++.-... .-.|.. +++ ...-..+.|.|+++....
T Consensus 428 DFIFG~------a~avf~~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 428 DFIFGN------AAVVFQNCNIQPRQPLPNQFNTITA-QGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ceeccC------ceeeeeccEEEEecCCCCCCceEec-CCCCCCCCCCEEEEEeeEEecCC
Confidence 233442 456777787754310 012222 222 133456778888887643
No 85
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=74.88 E-value=65 Score=31.92 Aligned_cols=110 Identities=13% Similarity=0.046 Sum_probs=54.7
Q ss_pred eeeEEEEeEEEEcCCCCCCCCeeeCC-CCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceE
Q 023585 43 CSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGI 121 (280)
Q Consensus 43 ~~nv~I~nv~I~~~~~~~ntDGid~~-~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi 121 (280)
.+++..+|++|.|.........+-+. .++...+.+|.|...-|-+-..+ ..-.+++|++.|. -=+
T Consensus 311 ~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-VDF 376 (539)
T PLN02995 311 GLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS-------------QRQFYRECYIYGT-VDF 376 (539)
T ss_pred CCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC-------------CceEEEeeEEeec-cce
Confidence 45666666666665321111222221 35666666776666555543322 1236677777653 223
Q ss_pred EEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 122 AVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 122 ~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
-+|. -...|+||++.-... .-.|.. .++ ...-..+.|.|+++...
T Consensus 377 IFG~------a~avf~~C~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 377 IFGN------AAAVFQNCIILPRRPLKGQANVITA-QGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred Eecc------cceEEeccEEEEecCCCCCcceEec-CCCCCCCCCceEEEEeeEEecC
Confidence 3432 455677777754310 112222 121 12335677888887764
No 86
>PLN02176 putative pectinesterase
Probab=73.05 E-value=80 Score=29.35 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=86.0
Q ss_pred eEEEEeeecEEEEeEEEecCCC----------cE--EEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEE
Q 023585 14 LIEFMNSRSIIISNVIFQNSPF----------WN--IHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIS 81 (280)
Q Consensus 14 ~i~~~~~~nv~I~gi~i~ns~~----------~~--i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~ 81 (280)
.+.. .++++..++|+++|... .. +.+. .+...+.+|++.+.. |-+-.. ..+-..++|+|.
T Consensus 116 T~~v-~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~-gDr~~f~~C~f~G~Q-----DTLy~~-~gRqyf~~CyIe 187 (340)
T PLN02176 116 TFTS-YASNIIITGITFKNTYNIASNSSRPTKPAVAARML-GDKYAIIDSSFDGFQ-----DTLFDG-KGRHYYKRCVIS 187 (340)
T ss_pred EEEE-ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEec-CccEEEEccEEeccc-----ceeEeC-CcCEEEEecEEE
Confidence 4444 58999999999999632 22 3333 688999999999855 333332 456889999998
Q ss_pred cCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCC---------ceEEEcce-ecCCEEeEEEEeeEEEeeCcEEEEE
Q 023585 82 TGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF---------SGIAVGSE-TSGGVENVLAEHINLYNVGVGIHVK 151 (280)
Q Consensus 82 ~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~---------~gi~Igs~-~~g~i~nI~~~n~~i~~~~~gi~Ik 151 (280)
-.=|=| . | .-...++||.+.... ..|.--+- ....-.-..|.||++.... -..++
T Consensus 188 G~VDFI-F--G-----------~a~a~Fe~C~I~s~~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLG 252 (340)
T PLN02176 188 GGIDFI-F--G-----------YAQSIFEGCTLKLTLGIYPPNEPYGTITAQGRPSPSDKGGFVFKDCTVTGVG-KALLG 252 (340)
T ss_pred ecccEE-e--c-----------CceEEEeccEEEEecccCCCCCCcEEEEeCCCCCCCCCcEEEEECCEEccCc-ceeee
Confidence 765554 2 2 244889999987421 11222111 1123357899999997642 22222
Q ss_pred EEcCCC-ceEEEEEEEeEEEcccCee
Q 023585 152 TNIGRG-GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 152 s~~g~~-g~v~nV~f~ni~~~~~~~~ 176 (280)
+. ..-..+.|.|..|.+.-.|
T Consensus 253 ----RPW~~yarvVf~~t~m~~~I~p 274 (340)
T PLN02176 253 ----RAWGSYARVIFYRSRFSDVILP 274 (340)
T ss_pred ----cCCCCCceEEEEecCcCCeEcc
Confidence 21 3457888999888875444
No 87
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=72.43 E-value=39 Score=33.47 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=8.4
Q ss_pred EEEEEEeEEEccc
Q 023585 161 RNITVSDVYMENA 173 (280)
Q Consensus 161 ~nV~f~ni~~~~~ 173 (280)
..+.|.|+++...
T Consensus 416 tG~~~~~c~i~~~ 428 (538)
T PLN03043 416 TGISIINCTIEAA 428 (538)
T ss_pred ceEEEEecEEecC
Confidence 4566777777653
No 88
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=72.37 E-value=34 Score=33.92 Aligned_cols=110 Identities=15% Similarity=0.083 Sum_probs=57.3
Q ss_pred eeeeEEEEeEEEEcCCCCCC--CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCc
Q 023585 42 YCSNVVIRYVTILAPADSPN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 119 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~~n--tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~ 119 (280)
..+++..+|++|.|...... .-.+.+ .++++.+.+|.|...-|-+-..+ ..-.+++|++.|. -
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-V 379 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRV-NADLVALYRCTINGYQDTLYVHS-------------FRQFYRECDIYGT-I 379 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEE-cCccEEEEcceEecccchhccCC-------------CceEEEeeEEeec-c
Confidence 35667777777777543211 112223 35677777777766656544332 2346777777663 2
Q ss_pred eEEEcceecCCEEeEEEEeeEEEeeCc--E--EEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 120 GIAVGSETSGGVENVLAEHINLYNVGV--G--IHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 120 gi~Igs~~~g~i~nI~~~n~~i~~~~~--g--i~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
=+-+|. -...|+||++.-... | -.|. .+++ ...-..+.|.|+++...
T Consensus 380 DFIFG~------a~avfq~c~i~~~~~~~~~~~~iT-A~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 380 DYIFGN------AAVVFQACNIVSKMPMPGQFTVIT-AQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred ceeecc------ceEEEeccEEEEecCCCCCceEEE-CCCCCCCCCCCEEEEEeeEEecC
Confidence 233432 456677777754321 1 1222 1121 12234677888887653
No 89
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=71.72 E-value=38 Score=33.72 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=37.8
Q ss_pred CccEEEEeeEEEcCC-----ceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEee
Q 023585 70 SSNVCIEDSYISTGD-----DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNV 144 (280)
Q Consensus 70 s~nV~I~n~~i~~gD-----D~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~ 144 (280)
.+++..+|+.|.+.. -++|+... .....+.||.|.+..+-+-..+ ..-.|+||.|+++
T Consensus 344 ~~~f~a~~itf~Ntag~~~~QAVAl~v~-----------~D~~~fy~c~~~G~QDTLy~~~------~rq~y~~C~I~Gt 406 (565)
T PLN02468 344 GKGFMARDMGFRNTAGPIKHQAVALMSS-----------ADLSVFYRCTMDAFQDTLYAHA------QRQFYRECNIYGT 406 (565)
T ss_pred CCCeEEEEEEEEeCCCCCCCceEEEEEc-----------CCcEEEEEeEEEeccchhccCC------CceEEEeeEEecc
Confidence 467777777776642 24444432 5678888888887655555543 2356888888875
No 90
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=71.25 E-value=99 Score=31.52 Aligned_cols=144 Identities=11% Similarity=0.082 Sum_probs=87.7
Q ss_pred CCeeEEEEeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCc
Q 023585 11 RPNLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 85 (280)
Q Consensus 11 rP~~i~~~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD 85 (280)
+-..+.+ ..+++..++|+|+|... ..+-+. ..+...+.+|.|.+-. |-+-.. ..+-..++|+|...=|
T Consensus 328 ~SAT~~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVD 400 (670)
T PLN02217 328 KTATVAI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ-----DTLYAH-SHRQFYRDCTISGTID 400 (670)
T ss_pred ceEEEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-----chhccC-CCcEEEEeCEEEEecc
Confidence 3334444 48899999999999753 233333 4688999999999855 333333 3567899999986544
Q ss_pred eEEEecCCCccCcccCCCeecEEEEeEEEeCCC------ceEEEcc-eecCCEEeEEEEeeEEEeeCcEEE----EEEEc
Q 023585 86 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGIH----VKTNI 154 (280)
Q Consensus 86 ~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi~----Iks~~ 154 (280)
-| .| .-...++||.+.... ..|.--+ .....-.-+.|.||++......+. .+.+-
T Consensus 401 FI---FG-----------~a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yL 466 (670)
T PLN02217 401 FL---FG-----------DAAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYL 466 (670)
T ss_pred EE---ec-----------CceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccccceee
Confidence 44 22 244889999987531 1122211 111234569999999987532111 12332
Q ss_pred CCC-ceEEEEEEEeEEEcccCe
Q 023585 155 GRG-GFIRNITVSDVYMENARK 175 (280)
Q Consensus 155 g~~-g~v~nV~f~ni~~~~~~~ 175 (280)
|+. ..-..+.|-+..|.+.-.
T Consensus 467 GRPW~~ysrvVf~~t~l~~~I~ 488 (670)
T PLN02217 467 GRPWKEYSRTIIMNTFIPDFVP 488 (670)
T ss_pred ccCCCCCceEEEEecccCCeEc
Confidence 332 445778888888876533
No 91
>PLN02197 pectinesterase
Probab=70.64 E-value=49 Score=33.14 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=58.9
Q ss_pred eeeeEEEEeEEEEcCCCCCC--CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCc
Q 023585 42 YCSNVVIRYVTILAPADSPN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 119 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~~n--tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~ 119 (280)
..+++..+|++|.|...... .-.+.+ .++...+.+|.|...-|-+-..++ .-.+++|++.+. -
T Consensus 362 ~~~~F~a~nitf~Ntag~~~~QAVAlrv-~~D~~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~Gt-V 426 (588)
T PLN02197 362 ESEGFMAKWIGFKNTAGPMGHQAVAIRV-NGDRAVIFNCRFDGYQDTLYVNNG-------------RQFYRNIVVSGT-V 426 (588)
T ss_pred ECCcEEEEEeEEEeCCCCCCCceEEEEe-cCCcEEEEEeEEEecCcceEecCC-------------CEEEEeeEEEec-c
Confidence 45667777777777542111 122333 357777777777766666554432 236777777663 2
Q ss_pred eEEEcceecCCEEeEEEEeeEEEeeC--cE--EEEEEEcCCC---ceEEEEEEEeEEEccc
Q 023585 120 GIAVGSETSGGVENVLAEHINLYNVG--VG--IHVKTNIGRG---GFIRNITVSDVYMENA 173 (280)
Q Consensus 120 gi~Igs~~~g~i~nI~~~n~~i~~~~--~g--i~Iks~~g~~---g~v~nV~f~ni~~~~~ 173 (280)
=+-+|. ....|+||++.-.. .| -.| +.+++. ..-..+.|.|+++...
T Consensus 427 DFIFG~------a~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 427 DFIFGK------SATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred cccccc------eeeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccEEecC
Confidence 233332 33677788775321 11 122 222221 2235678888888764
No 92
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=68.47 E-value=1.3e+02 Score=29.86 Aligned_cols=139 Identities=9% Similarity=0.081 Sum_probs=87.3
Q ss_pred CCeeEEEEeeecEEEEeEEEecCCC----cE--EEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCC
Q 023585 11 RPNLIEFMNSRSIIISNVIFQNSPF----WN--IHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGD 84 (280)
Q Consensus 11 rP~~i~~~~~~nv~I~gi~i~ns~~----~~--i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gD 84 (280)
+...+. ...+++..++|+++|... -. +.+ ..+.+.+.+|.|.+-.| -+-.. ..+-..++|+|...=
T Consensus 310 ~saT~~-v~~~~F~a~nit~~Ntag~~~~QAVAl~v-~~D~~~fy~C~~~G~QD-----TLy~~-~~rqyy~~C~I~GtV 381 (537)
T PLN02506 310 RTATVA-VSGRGFIARDITFRNTAGPQNHQAVALRV-DSDQSAFYRCSMEGYQD-----TLYAH-SLRQFYRECEIYGTI 381 (537)
T ss_pred cceEEE-EEcCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEcceeecccc-----cceec-CCceEEEeeEEeccc
Confidence 333343 458999999999999753 22 333 36889999999998653 33333 345699999998654
Q ss_pred ceEEEecCCCccCcccCCCeecEEEEeEEEeCCC------ceEEEcc-eecCCEEeEEEEeeEEEeeCcEEEEE-EEcCC
Q 023585 85 DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGIHVK-TNIGR 156 (280)
Q Consensus 85 D~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi~Ik-s~~g~ 156 (280)
|-| .| .-...++||.+.... ..|.--+ .....-.-+.|.||++.... ..+++ .|
T Consensus 382 DFI---FG-----------~a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~-~~yLGRPW--- 443 (537)
T PLN02506 382 DFI---FG-----------NGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLATQ-PTYLGRPW--- 443 (537)
T ss_pred ceE---cc-----------CceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccCC-ceEEecCC---
Confidence 554 22 244889999987531 2233211 11123467899999987642 23333 22
Q ss_pred CceEEEEEEEeEEEcccCee
Q 023585 157 GGFIRNITVSDVYMENARKG 176 (280)
Q Consensus 157 ~g~v~nV~f~ni~~~~~~~~ 176 (280)
+.-..+.|-+..|.+.-.|
T Consensus 444 -~~~sr~v~~~t~l~~~I~p 462 (537)
T PLN02506 444 -KQYSRTVFMNTYMSQLVQP 462 (537)
T ss_pred -CCCceEEEEecCCCCeecC
Confidence 3457778888888765444
No 93
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=67.66 E-value=1.3e+02 Score=29.76 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=87.0
Q ss_pred EeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecC
Q 023585 18 MNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 92 (280)
Q Consensus 18 ~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg 92 (280)
...+++..++|++.|... ..+-+. ..+...+.+|+|.+-.| -+-.. ...-..++|+|...=|-| + |
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-F--G 379 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQD-----TLMVH-SQRQFYRECYIYGTVDFI-F--G 379 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccc-----hhccC-CCceEEEeeEEeeccceE-e--c
Confidence 458899999999999753 233333 36889999999999653 23333 345699999998654554 2 2
Q ss_pred CCccCcccCCCeecEEEEeEEEeCCC------ceEEEcc-eecCCEEeEEEEeeEEEeeCcEE----EEEEEcCCC-ceE
Q 023585 93 WDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GFI 160 (280)
Q Consensus 93 ~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi----~Iks~~g~~-g~v 160 (280)
.-...++||.+.... .-|.--+ .....-.-+.|.||++....... ..+.+-|+. +.-
T Consensus 380 -----------~a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 448 (539)
T PLN02995 380 -----------NAAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKF 448 (539)
T ss_pred -----------ccceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCC
Confidence 245788999986531 1122211 11123467899999998753211 122333332 345
Q ss_pred EEEEEEeEEEcccCeeE
Q 023585 161 RNITVSDVYMENARKGI 177 (280)
Q Consensus 161 ~nV~f~ni~~~~~~~~i 177 (280)
..+.|-+..|.+.-.|.
T Consensus 449 srvv~~~t~~~~~I~p~ 465 (539)
T PLN02995 449 SRTVVLQTYLDNVVSPV 465 (539)
T ss_pred cceEEEeccccCccccc
Confidence 67888888887765553
No 94
>PLN02634 probable pectinesterase
Probab=67.11 E-value=1.1e+02 Score=28.64 Aligned_cols=136 Identities=13% Similarity=0.106 Sum_probs=85.8
Q ss_pred eEEEEeeecEEEEeEEEecCCC---------c--EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEc
Q 023585 14 LIEFMNSRSIIISNVIFQNSPF---------W--NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYIST 82 (280)
Q Consensus 14 ~i~~~~~~nv~I~gi~i~ns~~---------~--~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~ 82 (280)
.+.+ ..+++..++|+++|... - .+.+. .+...+.+|.+.+.. |-+-.. ..+-..+||+|.-
T Consensus 143 Tv~V-~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~-gDra~f~~C~f~G~Q-----DTL~~~-~gR~yf~~CyIeG 214 (359)
T PLN02634 143 SVTV-YANYFTARNISFKNTAPAPMPGMQGWQAVAFRIS-GDKAFFFGCGFYGAQ-----DTLCDD-AGRHYFKECYIEG 214 (359)
T ss_pred EEEE-ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEec-CCcEEEEEeEEeccc-----ceeeeC-CCCEEEEeeEEcc
Confidence 3433 47899999999999742 1 24443 678999999999865 333332 3568899999986
Q ss_pred CCceEEEecCCCccCcccCCCeecEEEEeEEEeCCC---ceEEEcc-eecCCEEeEEEEeeEEEeeCcEEEEE-EEcCCC
Q 023585 83 GDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF---SGIAVGS-ETSGGVENVLAEHINLYNVGVGIHVK-TNIGRG 157 (280)
Q Consensus 83 gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~---~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi~Ik-s~~g~~ 157 (280)
.=|=| .| .-...++||.+.... ..|.--+ .....-.-..|.||++.... .++++ .|
T Consensus 215 ~VDFI---FG-----------~g~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~g-~~yLGRPW---- 275 (359)
T PLN02634 215 SIDFI---FG-----------NGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTG-PLYVGRAM---- 275 (359)
T ss_pred cccEE---cC-----------CceEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCCc-ceEecCCC----
Confidence 54554 22 234689999987532 1222221 11123456899999997642 23333 22
Q ss_pred ceEEEEEEEeEEEcccCee
Q 023585 158 GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 158 g~v~nV~f~ni~~~~~~~~ 176 (280)
+.-..+.|.+..|.+.-.|
T Consensus 276 ~~yarvVf~~t~l~~~I~p 294 (359)
T PLN02634 276 GQYSRIVYAYTYFDAVVAH 294 (359)
T ss_pred CCcceEEEEecccCCEEcc
Confidence 4467888999888875444
No 95
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=66.90 E-value=56 Score=32.61 Aligned_cols=112 Identities=13% Similarity=0.119 Sum_probs=59.4
Q ss_pred eeeeEEEEeEEEEcCCCCCCCCeeeCC-CCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCce
Q 023585 42 YCSNVVIRYVTILAPADSPNTDGIDPD-SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG 120 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~~ntDGid~~-~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~g 120 (280)
..+++..+|++|.|.........+-+. .++...+.+|.|...-|-+-..+ ..-.+++|++.|. -=
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~Gt-VD 410 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS-------------HRQFFRDCTVSGT-VD 410 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC-------------CcEEEEeeEEecc-cc
Confidence 346677777777775421111222221 35777777777776666544332 2246677777663 22
Q ss_pred EEEcceecCCEEeEEEEeeEEEeeCc----EEEEEEEcCCC--ceEEEEEEEeEEEcccC
Q 023585 121 IAVGSETSGGVENVLAEHINLYNVGV----GIHVKTNIGRG--GFIRNITVSDVYMENAR 174 (280)
Q Consensus 121 i~Igs~~~g~i~nI~~~n~~i~~~~~----gi~Iks~~g~~--g~v~nV~f~ni~~~~~~ 174 (280)
+-+|. ....|+||++.-... .-.|.. +++. ..-..+.|.|+++....
T Consensus 411 FIFG~------a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 411 FIFGD------AKVVLQNCNIVVRKPMKGQSCMITA-QGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred eEccC------ceEEEEccEEEEecCCCCCceEEEe-CCCCCCCCCceEEEEeeEEecCc
Confidence 33443 446778888764321 122332 1221 22346778888887643
No 96
>PLN02432 putative pectinesterase
Probab=65.62 E-value=1.1e+02 Score=27.89 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=84.3
Q ss_pred EeeecEEEEeEEEecCCC-----cEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecC
Q 023585 18 MNSRSIIISNVIFQNSPF-----WNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 92 (280)
Q Consensus 18 ~~~~nv~I~gi~i~ns~~-----~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg 92 (280)
...+++..++|+++|... -.+.+. .+...+.+|.+.+.. |-+-.. ...-..+||+|.-.=|-| .+.
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~-gDr~~f~~c~~~G~Q-----DTLy~~-~gr~yf~~c~I~G~VDFI-FG~- 161 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVA-GDRAAFYGCRILSYQ-----DTLLDD-TGRHYYRNCYIEGATDFI-CGN- 161 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEc-CCcEEEEcceEeccc-----ceeEEC-CCCEEEEeCEEEecccEE-ecC-
Confidence 457899999999999732 234443 588999999999855 334332 346799999998765555 222
Q ss_pred CCccCcccCCCeecEEEEeEEEeCC--C-ceEEEcce-ecCCEEeEEEEeeEEEeeCcEEEEEEEcCCC-ceEEEEEEEe
Q 023585 93 WDEYGIAYGHPSSGITIRRVTGSSP--F-SGIAVGSE-TSGGVENVLAEHINLYNVGVGIHVKTNIGRG-GFIRNITVSD 167 (280)
Q Consensus 93 ~~~~g~~~~~~~~nI~I~n~~~~~~--~-~gi~Igs~-~~g~i~nI~~~n~~i~~~~~gi~Iks~~g~~-g~v~nV~f~n 167 (280)
-...+++|.+... . ..|.--+- ....-.-..|.||++.... ...+ |+. +.-..+.|.|
T Consensus 162 ------------g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg~g-~~yL----GRpW~~~srvvf~~ 224 (293)
T PLN02432 162 ------------AASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTGAG-TTYL----GRPWGPYSRVVFAL 224 (293)
T ss_pred ------------ceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcccc-hhhc----cCCCCCccEEEEEe
Confidence 3488999998642 1 22332221 1123346899999997532 2222 221 3457888999
Q ss_pred EEEcccCee
Q 023585 168 VYMENARKG 176 (280)
Q Consensus 168 i~~~~~~~~ 176 (280)
..|...-.|
T Consensus 225 t~l~~~I~p 233 (293)
T PLN02432 225 SYMSSVVAP 233 (293)
T ss_pred cccCCeEcC
Confidence 888765333
No 97
>PLN02314 pectinesterase
Probab=65.59 E-value=1.5e+02 Score=29.68 Aligned_cols=144 Identities=12% Similarity=0.108 Sum_probs=89.1
Q ss_pred CCeeEEEEeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCc
Q 023585 11 RPNLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 85 (280)
Q Consensus 11 rP~~i~~~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD 85 (280)
+...+.+ ..+++..++|++.|... -.+-+. ..+...+.+|.+.+-. |-+-.. +..-..++|+|...=|
T Consensus 356 ~saT~~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtvD 428 (586)
T PLN02314 356 STATFAA-AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ-----DTLYAH-SNRQFYRDCDITGTID 428 (586)
T ss_pred ceEEEEE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc-----chheeC-CCCEEEEeeEEEeccc
Confidence 3334443 58999999999999743 222222 4688999999999965 333333 3456899999986545
Q ss_pred eEEEecCCCccCcccCCCeecEEEEeEEEeCCC------ceEEEcce-ecCCEEeEEEEeeEEEeeCcEEEEEEEcCCC-
Q 023585 86 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSE-TSGGVENVLAEHINLYNVGVGIHVKTNIGRG- 157 (280)
Q Consensus 86 ~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs~-~~g~i~nI~~~n~~i~~~~~gi~Iks~~g~~- 157 (280)
-| .| .-...++||.+.... ..|.--+- ....-.-+.|.||++.... .+..+++-|+.
T Consensus 429 FI---FG-----------~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~-~~~~~~yLGRpW 493 (586)
T PLN02314 429 FI---FG-----------NAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG-NLTAPTYLGRPW 493 (586)
T ss_pred ee---cc-----------CceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC-cccccccccCCC
Confidence 54 22 245889999986531 22222211 1233467899999998754 22333443332
Q ss_pred ceEEEEEEEeEEEcccCee
Q 023585 158 GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 158 g~v~nV~f~ni~~~~~~~~ 176 (280)
..-..+.|-+..|.+.-.|
T Consensus 494 ~~ysr~v~~~s~i~~~I~p 512 (586)
T PLN02314 494 KDFSTTVIMQSYIGSFLNP 512 (586)
T ss_pred CCCceEEEEecccCCcccc
Confidence 3455678888888776444
No 98
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=65.36 E-value=1.2e+02 Score=30.05 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=88.6
Q ss_pred CCeeEEEEeeecEEEEeEEEecCCCc------EEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCC
Q 023585 11 RPNLIEFMNSRSIIISNVIFQNSPFW------NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGD 84 (280)
Q Consensus 11 rP~~i~~~~~~nv~I~gi~i~ns~~~------~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gD 84 (280)
+...+.+ ..+++..++|+++|.... .+.+ ..+.+.+.+|+|.+-.| -+-.. +.+-..++|+|...=
T Consensus 308 ~saT~~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v-~~D~~~fy~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtV 379 (541)
T PLN02416 308 RSATLAV-SGEGFLARDITIENTAGPEKHQAVALRV-NADLVALYRCTINGYQD-----TLYVH-SFRQFYRECDIYGTI 379 (541)
T ss_pred ceEEEEE-ECCCeEEEeeEEEECCCCCCCceEEEEE-cCccEEEEcceEecccc-----hhccC-CCceEEEeeEEeecc
Confidence 3344544 489999999999997542 2333 36889999999999653 33333 456699999998765
Q ss_pred ceEEEecCCCccCcccCCCeecEEEEeEEEeCCCc-----e-EEEcc-eecCCEEeEEEEeeEEEeeCcEE----EEEEE
Q 023585 85 DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS-----G-IAVGS-ETSGGVENVLAEHINLYNVGVGI----HVKTN 153 (280)
Q Consensus 85 D~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~-----g-i~Igs-~~~g~i~nI~~~n~~i~~~~~gi----~Iks~ 153 (280)
|-| + | .-...++||.+..... + |.--+ .....-.-+.|.||++....... ..+++
T Consensus 380 DFI-F--G-----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~y 445 (541)
T PLN02416 380 DYI-F--G-----------NAAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILATEDLYSNSNSVKSY 445 (541)
T ss_pred cee-e--c-----------cceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecCCcccccccccccc
Confidence 554 2 2 2458899999865311 1 11111 11123467999999998643111 12333
Q ss_pred cCCC-ceEEEEEEEeEEEcccCee
Q 023585 154 IGRG-GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 154 ~g~~-g~v~nV~f~ni~~~~~~~~ 176 (280)
-|+. ..-..+.|-+..|.+.-.|
T Consensus 446 LGRPW~~~sr~v~~~s~i~~~I~p 469 (541)
T PLN02416 446 LGRPWRVYSRTVVLESYIDDFIDP 469 (541)
T ss_pred ccCCCCCCccEEEEecccCCeecc
Confidence 3332 3456778888888775444
No 99
>PLN02304 probable pectinesterase
Probab=64.69 E-value=1.3e+02 Score=28.46 Aligned_cols=134 Identities=10% Similarity=0.062 Sum_probs=84.0
Q ss_pred EeeecEEEEeEEEecCCC---------cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceE
Q 023585 18 MNSRSIIISNVIFQNSPF---------WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLV 87 (280)
Q Consensus 18 ~~~~nv~I~gi~i~ns~~---------~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~i 87 (280)
...+++..++|+++|... -.+-+. ..+...+.+|.+.+..| -+-.. ...-..+||+|.-.=|-|
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QD-----TLy~~-~gR~Yf~~CyIeG~VDFI 232 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQD-----TLHDD-RGRHYFKDCYIQGSIDFI 232 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccc-----eeEeC-CCCEEEEeeEEcccccEE
Confidence 347999999999999742 222222 36889999999999653 33332 346789999998655554
Q ss_pred EEecCCCccCcccCCCeecEEEEeEEEeCCCc-----------eEEEcc-eecCCEEeEEEEeeEEEeeCcEEEEE-EEc
Q 023585 88 AVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS-----------GIAVGS-ETSGGVENVLAEHINLYNVGVGIHVK-TNI 154 (280)
Q Consensus 88 aiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~-----------gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi~Ik-s~~ 154 (280)
++. -...+++|.+..... .|.--+ .....-.-..|.||++.... -++++ .|
T Consensus 233 -FG~-------------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~g-~vyLGRPW- 296 (379)
T PLN02304 233 -FGD-------------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGTG-RIWLGRAW- 296 (379)
T ss_pred -ecc-------------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEccCc-ceeecCCC-
Confidence 222 346899999875322 122211 11123456789999987632 23332 22
Q ss_pred CCCceEEEEEEEeEEEcccCee
Q 023585 155 GRGGFIRNITVSDVYMENARKG 176 (280)
Q Consensus 155 g~~g~v~nV~f~ni~~~~~~~~ 176 (280)
..-..+.|.+..|.+.-.|
T Consensus 297 ---~pysrvVf~~t~m~~~I~p 315 (379)
T PLN02304 297 ---RPYSRVVFAYTSMTDIIAP 315 (379)
T ss_pred ---CCcceEEEEecccCCEEcC
Confidence 3457888888888875444
No 100
>PLN02497 probable pectinesterase
Probab=64.67 E-value=1.2e+02 Score=28.10 Aligned_cols=133 Identities=9% Similarity=0.009 Sum_probs=85.1
Q ss_pred EeeecEEEEeEEEecCCCc-----------E--EEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCC
Q 023585 18 MNSRSIIISNVIFQNSPFW-----------N--IHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGD 84 (280)
Q Consensus 18 ~~~~nv~I~gi~i~ns~~~-----------~--i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gD 84 (280)
...+++..++|+++|...+ . +.+ ..+...+.+|++.+..| -+-. ...+-..+||+|.-.=
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v-~gDr~~fy~C~f~G~QD-----TLy~-~~gRqyf~~C~IeG~V 184 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMI-GGDKSAFYSCGFAGVQD-----TLWD-SDGRHYFKRCTIQGAV 184 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEe-cCCcEEEEeeEEecccc-----ceee-CCCcEEEEeCEEEecc
Confidence 4588999999999997432 2 333 36889999999999653 3322 2356789999998655
Q ss_pred ceEEEecCCCccCcccCCCeecEEEEeEEEeCCC--------ceEEEcc-eecCCEEeEEEEeeEEEeeCcEEEEE-EEc
Q 023585 85 DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF--------SGIAVGS-ETSGGVENVLAEHINLYNVGVGIHVK-TNI 154 (280)
Q Consensus 85 D~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~--------~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi~Ik-s~~ 154 (280)
|=| .| .-...++||.+.... ..|.--+ .....-.-..|.||++.... -.+++ .|
T Consensus 185 DFI---FG-----------~g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRPW- 248 (331)
T PLN02497 185 DFI---FG-----------SGQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGTG-SAYLGRPW- 248 (331)
T ss_pred cEE---cc-----------CceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccCC-CEEEeCCC-
Confidence 554 22 234789999987521 1222221 11223456799999998642 23333 22
Q ss_pred CCCceEEEEEEEeEEEcccCee
Q 023585 155 GRGGFIRNITVSDVYMENARKG 176 (280)
Q Consensus 155 g~~g~v~nV~f~ni~~~~~~~~ 176 (280)
..-..|.|.+..|.+.-.|
T Consensus 249 ---~~ysrvvf~~t~m~~~I~p 267 (331)
T PLN02497 249 ---RGYSRVLFYNSNLTDVVVP 267 (331)
T ss_pred ---CCCceEEEEecccCCeEcc
Confidence 3357888999888876444
No 101
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=64.20 E-value=67 Score=32.22 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=59.0
Q ss_pred eeeeEEEEeEEEEcCCCCCC--CCeeeCCCCccEEEEeeEEEcCCceEEEecCCCccCcccCCCeecEEEEeEEEeCCCc
Q 023585 42 YCSNVVIRYVTILAPADSPN--TDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFS 119 (280)
Q Consensus 42 ~~~nv~I~nv~I~~~~~~~n--tDGid~~~s~nV~I~n~~i~~gDD~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~ 119 (280)
..+++..+|++|.|...... .-.+.+ .++...+.+|.|...-|-+-..++ .-.+++|++.|. -
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv-~~D~~~fy~C~~~g~QDTLy~~~~-------------rq~y~~c~I~Gt-v 424 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRV-GSDFSAFYQCDMFAYQDTLYVHSN-------------RQFFVKCHITGT-V 424 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEe-cCCcEEEEeeeEecccchhccCCC-------------cEEEEeeEEeec-c
Confidence 34667777777777542211 112333 356777777777766666543332 236777777663 2
Q ss_pred eEEEcceecCCEEeEEEEeeEEEeeCc--E--EEEEEEcCC--CceEEEEEEEeEEEccc
Q 023585 120 GIAVGSETSGGVENVLAEHINLYNVGV--G--IHVKTNIGR--GGFIRNITVSDVYMENA 173 (280)
Q Consensus 120 gi~Igs~~~g~i~nI~~~n~~i~~~~~--g--i~Iks~~g~--~g~v~nV~f~ni~~~~~ 173 (280)
=+-+|. ....|+||++.-... | -.|.. .++ ...-..+.|.|+++...
T Consensus 425 DFIFG~------a~avfq~c~i~~r~~~~~~~~~iTA-qgr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 425 DFIFGN------AAAVLQDCDINARRPNSGQKNMVTA-QGRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred ceeccc------eeEEEEccEEEEecCCCCCcceEEe-cCCCCCCCCceEEEEecEEecC
Confidence 233332 556788888764321 1 12322 222 12345677888888754
No 102
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=63.80 E-value=1.7e+02 Score=29.49 Aligned_cols=144 Identities=8% Similarity=0.024 Sum_probs=89.3
Q ss_pred CeeEEEEeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCce
Q 023585 12 PNLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDL 86 (280)
Q Consensus 12 P~~i~~~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~ 86 (280)
...+.+ ..+++..++|+++|... -.+-+. .++...+.+|.|.+-.| -+-.. ..+-..++|+|...=|-
T Consensus 364 saT~~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDF 436 (596)
T PLN02745 364 TATFVA-LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQD-----TLYAQ-THRQFYRSCVITGTIDF 436 (596)
T ss_pred eEEEEE-EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccc-----ccccC-CCcEEEEeeEEEeeccE
Confidence 334444 58999999999999643 222222 46889999999999653 33333 34679999999876554
Q ss_pred EEEecCCCccCcccCCCeecEEEEeEEEeCCC------ceEEEcce-ecCCEEeEEEEeeEEEeeCcEE----EEEEEcC
Q 023585 87 VAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSE-TSGGVENVLAEHINLYNVGVGI----HVKTNIG 155 (280)
Q Consensus 87 iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs~-~~g~i~nI~~~n~~i~~~~~gi----~Iks~~g 155 (280)
| .| .-...++||.+.... ..|.--+- ....-.-+.|.||++....... ..+++-|
T Consensus 437 I---FG-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLG 502 (596)
T PLN02745 437 I---FG-----------DAAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLG 502 (596)
T ss_pred E---ec-----------ceeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCccccccccccceecc
Confidence 4 22 355889999986531 22332211 1123467999999998753211 1233333
Q ss_pred CC-ceEEEEEEEeEEEcccCee
Q 023585 156 RG-GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 156 ~~-g~v~nV~f~ni~~~~~~~~ 176 (280)
+. ..-..+.|.+..|.+.-.|
T Consensus 503 RPW~~ysrvv~~~s~l~~~I~p 524 (596)
T PLN02745 503 RPWKEFSRTIVMESTIEDVIDP 524 (596)
T ss_pred CCCCCCccEEEEecccCCeEcc
Confidence 32 4457788888888765443
No 103
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=61.07 E-value=1.8e+02 Score=28.94 Aligned_cols=139 Identities=16% Similarity=0.152 Sum_probs=86.6
Q ss_pred EeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecC
Q 023585 18 MNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 92 (280)
Q Consensus 18 ~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg 92 (280)
...+++..++|+++|... ..+-+. ..+...+.+|+|.+-.| -+-.. +..-..+||+|...=|-| .|
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI---FG 390 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD-----TLYAH-SLRQFYRDSYITGTVDFI---FG 390 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceec-CCcEEEEeeEEEecccee---cc
Confidence 457999999999999753 233222 46889999999999653 33333 345699999998765554 22
Q ss_pred CCccCcccCCCeecEEEEeEEEeCCC------ceEEEcc-eecCCEEeEEEEeeEEEeeCcEE----EEEEEcCCC-ceE
Q 023585 93 WDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GFI 160 (280)
Q Consensus 93 ~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi----~Iks~~g~~-g~v 160 (280)
.-...++||.+.... ..|..-+ .....-.-+.|.||++....... ..+++-|+. ..-
T Consensus 391 -----------~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 459 (548)
T PLN02301 391 -----------NAAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIASSDLEPVKGSFKTYLGRPWKEY 459 (548)
T ss_pred -----------cceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecCccccccccccceeeecCCCCC
Confidence 345888999986531 1233321 12234567999999998753211 122332332 345
Q ss_pred EEEEEEeEEEcccCee
Q 023585 161 RNITVSDVYMENARKG 176 (280)
Q Consensus 161 ~nV~f~ni~~~~~~~~ 176 (280)
..+.|-+..|.+.-.|
T Consensus 460 sr~V~~~s~l~~~I~p 475 (548)
T PLN02301 460 SRTVVMQSYIDDHIDP 475 (548)
T ss_pred ceEEEEecccCCeecc
Confidence 6777888887765444
No 104
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=60.34 E-value=1.9e+02 Score=28.93 Aligned_cols=145 Identities=12% Similarity=0.087 Sum_probs=89.0
Q ss_pred CCeeEEEEeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCc
Q 023585 11 RPNLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 85 (280)
Q Consensus 11 rP~~i~~~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD 85 (280)
+...+.+ ..+++..++|++.|... -.+-+. ..+...+.+|+|.+-. |-+-.. +..-..++|+|...=|
T Consensus 331 ~SaT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVD 403 (566)
T PLN02713 331 NSATFAV-VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQ-----DTLYTH-SLRQFYRECDIYGTVD 403 (566)
T ss_pred cceeEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCC-----cceEEC-CCCEEEEeeEEecccc
Confidence 3344544 46999999999999643 222222 4688999999999965 334443 3457999999976545
Q ss_pred eEEEecCCCccCcccCCCeecEEEEeEEEeCCC------ceEEEcc-eecCCEEeEEEEeeEEEeeCcEE----EEEEEc
Q 023585 86 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGI----HVKTNI 154 (280)
Q Consensus 86 ~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi----~Iks~~ 154 (280)
-| .| .-.+.++||.+.... ..|..-+ .....-.-+.|.||++....... ..+++-
T Consensus 404 FI---FG-----------~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yL 469 (566)
T PLN02713 404 FI---FG-----------NAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYL 469 (566)
T ss_pred ee---cc-----------cceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceee
Confidence 54 22 345889999986531 1233211 11233467899999998653210 122332
Q ss_pred CCC-ceEEEEEEEeEEEcccCee
Q 023585 155 GRG-GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 155 g~~-g~v~nV~f~ni~~~~~~~~ 176 (280)
|+. ..-..+.|.+..|.+.-.|
T Consensus 470 GRPW~~ysr~V~~~s~~~~~I~p 492 (566)
T PLN02713 470 GRPWKEYSRTVVMQSYIDGLIDP 492 (566)
T ss_pred ecCCCCcceEEEEecccCCeecc
Confidence 332 3456788888888775444
No 105
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=59.03 E-value=1.9e+02 Score=28.65 Aligned_cols=46 Identities=7% Similarity=-0.041 Sum_probs=24.5
Q ss_pred EEeEEEEeeEEEeeCcEE----EEEEEcCCC-ceEEEEEEEeEEEcccCee
Q 023585 131 VENVLAEHINLYNVGVGI----HVKTNIGRG-GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 131 i~nI~~~n~~i~~~~~gi----~Iks~~g~~-g~v~nV~f~ni~~~~~~~~ 176 (280)
-.-+.|.||++.....-. ..+++-|+. ..-..+.|-+..|.+.-.|
T Consensus 415 ~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~~I~p 465 (538)
T PLN03043 415 NTGISIINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGDLIQP 465 (538)
T ss_pred CceEEEEecEEecCCcccccccccceeccCCCCCCceEEEEecccCCeecc
Confidence 345788888887642110 112232332 3356777777777765444
No 106
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=57.34 E-value=13 Score=19.30 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=10.9
Q ss_pred eEEEEeeEEEeeCc-EEEEE
Q 023585 133 NVLAEHINLYNVGV-GIHVK 151 (280)
Q Consensus 133 nI~~~n~~i~~~~~-gi~Ik 151 (280)
+++|+++++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 45666666665544 55554
No 107
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=57.15 E-value=2.1e+02 Score=28.39 Aligned_cols=134 Identities=10% Similarity=0.080 Sum_probs=84.7
Q ss_pred EEeeecEEEEeEEEecCCC----cE--EEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEe
Q 023585 17 FMNSRSIIISNVIFQNSPF----WN--IHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVK 90 (280)
Q Consensus 17 ~~~~~nv~I~gi~i~ns~~----~~--i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaik 90 (280)
....+++..++|+++|... -. +.+ ..+...+.+|++.+-. |-+-.. +.+-..++|+|...=|=|
T Consensus 309 ~v~~~~F~a~nitf~Ntag~~~~QAVALrv-~gDr~~fy~C~f~GyQ-----DTLy~~-~~Rqyy~~C~I~GtVDFI--- 378 (529)
T PLN02170 309 AAMGDGFIARDITFVNSAGPNSEQAVALRV-GSDKSVVYRCSVEGYQ-----DSLYTH-SKRQFYRETDITGTVDFI--- 378 (529)
T ss_pred EEEcCCeEEEeeEEEecCCCCCCceEEEEe-cCCcEEEEeeeEeccC-----CcceeC-CCCEEEEeeEEcccccee---
Confidence 3458899999999999743 22 333 3688999999999965 333333 345688999998654554
Q ss_pred cCCCccCcccCCCeecEEEEeEEEeCCC-----ceEEEcc-eecCCEEeEEEEeeEEEeeCcEEEEEEEcCCC-ceEEEE
Q 023585 91 SGWDEYGIAYGHPSSGITIRRVTGSSPF-----SGIAVGS-ETSGGVENVLAEHINLYNVGVGIHVKTNIGRG-GFIRNI 163 (280)
Q Consensus 91 sg~~~~g~~~~~~~~nI~I~n~~~~~~~-----~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi~Iks~~g~~-g~v~nV 163 (280)
.| .-...++||.+.... .-|.--+ .....-.-+.|.||++.... ..+++ +. ..-..+
T Consensus 379 FG-----------~a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~-~~yLG----RPW~~ysrv 442 (529)
T PLN02170 379 FG-----------NSAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES-MTYLG----RPWKEYSRT 442 (529)
T ss_pred cc-----------cceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC-ceeee----CCCCCCceE
Confidence 22 244888999986532 1122211 11223457899999998753 22232 21 335678
Q ss_pred EEEeEEEcccCee
Q 023585 164 TVSDVYMENARKG 176 (280)
Q Consensus 164 ~f~ni~~~~~~~~ 176 (280)
.|.+..|.+.-.|
T Consensus 443 Vf~~t~l~~~I~p 455 (529)
T PLN02170 443 VVMQSFIDGSIHP 455 (529)
T ss_pred EEEecccCCeecc
Confidence 8888888765444
No 108
>PLN02916 pectinesterase family protein
Probab=54.46 E-value=2.2e+02 Score=27.96 Aligned_cols=140 Identities=10% Similarity=0.013 Sum_probs=87.1
Q ss_pred EEeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEec
Q 023585 17 FMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKS 91 (280)
Q Consensus 17 ~~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiks 91 (280)
....+++..++|++.|... -.+-+. ..+...+.+|.|.+-. |-+-.. +.+-..++|+|.-.=|-| .
T Consensus 273 ~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---F 343 (502)
T PLN02916 273 GVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQ-----DTLFVH-SLRQFYRDCHIYGTIDFI---F 343 (502)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccC-----ceeEeC-CCCEEEEecEEeccccee---c
Confidence 3457899999999999743 222222 4688999999999965 434433 345688999998765554 2
Q ss_pred CCCccCcccCCCeecEEEEeEEEeCCC------ceEEEcc-eecCCEEeEEEEeeEEEeeCcEE----EEEEEcCCC-ce
Q 023585 92 GWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GF 159 (280)
Q Consensus 92 g~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi----~Iks~~g~~-g~ 159 (280)
| .-...++||.+.... ..|.--+ .....-.-+.|.||++....... ..+++-|+. +.
T Consensus 344 G-----------~a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRPW~~ 412 (502)
T PLN02916 344 G-----------DAAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRPWKK 412 (502)
T ss_pred c-----------CceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCCCC
Confidence 2 345888999886531 2233221 11233467999999998753111 122332332 44
Q ss_pred EEEEEEEeEEEcccCee
Q 023585 160 IRNITVSDVYMENARKG 176 (280)
Q Consensus 160 v~nV~f~ni~~~~~~~~ 176 (280)
-..+.|-+..|.+.-.|
T Consensus 413 ysrvVf~~t~~~~~I~p 429 (502)
T PLN02916 413 YSRTVFLKTDLDGLIDP 429 (502)
T ss_pred CceEEEEecccCCeEcC
Confidence 57888888888876444
No 109
>PLN02197 pectinesterase
Probab=54.30 E-value=2.4e+02 Score=28.32 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=87.1
Q ss_pred eEEEEeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEE
Q 023585 14 LIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVA 88 (280)
Q Consensus 14 ~i~~~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~ia 88 (280)
.+. ...+++..++|+++|... ..+-+. ..+...+.+|.|.+-. |-+-.. ..+-..++|+|.-.=|-|
T Consensus 358 T~~-v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ-----DTLy~~-~~Rqyy~~C~I~GtVDFI- 429 (588)
T PLN02197 358 TVQ-VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ-----DTLYVN-NGRQFYRNIVVSGTVDFI- 429 (588)
T ss_pred EEE-EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC-----cceEec-CCCEEEEeeEEEeccccc-
Confidence 444 458999999999999643 233333 3688999999999965 334433 345689999998654444
Q ss_pred EecCCCccCcccCCCeecEEEEeEEEeCCC--ce----EEEcce-e-cCCEEeEEEEeeEEEeeCcE----EEEEEEcCC
Q 023585 89 VKSGWDEYGIAYGHPSSGITIRRVTGSSPF--SG----IAVGSE-T-SGGVENVLAEHINLYNVGVG----IHVKTNIGR 156 (280)
Q Consensus 89 iksg~~~~g~~~~~~~~nI~I~n~~~~~~~--~g----i~Igs~-~-~g~i~nI~~~n~~i~~~~~g----i~Iks~~g~ 156 (280)
.| ..-..++||.+.... .+ |.--+- . ...-.-+.|.||++...... ...+++-|+
T Consensus 430 --FG-----------~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGR 496 (588)
T PLN02197 430 --FG-----------KSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGR 496 (588)
T ss_pred --cc-----------ceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCC
Confidence 22 233889999986421 11 111110 0 12235689999999875321 122334343
Q ss_pred C-ceEEEEEEEeEEEcccCee
Q 023585 157 G-GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 157 ~-g~v~nV~f~ni~~~~~~~~ 176 (280)
. ..-..+.|-+..|.+.-.|
T Consensus 497 PW~~ysrvV~~~s~~~~~I~p 517 (588)
T PLN02197 497 PWKKFSTTVIISTEIGDLIRP 517 (588)
T ss_pred CCCCCceEEEEecccCCeecC
Confidence 2 4467788888888765444
No 110
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=53.80 E-value=2.3e+02 Score=27.98 Aligned_cols=139 Identities=13% Similarity=0.110 Sum_probs=87.1
Q ss_pred EeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecC
Q 023585 18 MNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 92 (280)
Q Consensus 18 ~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg 92 (280)
...+++..++|++.|... ..+-+. ..+...+.+|.+.+-. |-+-... .+-..++|+|...=|-| .|
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI---FG 360 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ-----DTLYTHT-MRQFYRECRITGTVDFI---FG 360 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC-----CeeEeCC-CCEEEEeeEEeecccEE---ec
Confidence 448899999999999753 233333 3688999999999965 4344433 45678999998765554 22
Q ss_pred CCccCcccCCCeecEEEEeEEEeCC------CceEEEcce-ecCCEEeEEEEeeEEEeeCcEEE----EEEEcCCC-ceE
Q 023585 93 WDEYGIAYGHPSSGITIRRVTGSSP------FSGIAVGSE-TSGGVENVLAEHINLYNVGVGIH----VKTNIGRG-GFI 160 (280)
Q Consensus 93 ~~~~g~~~~~~~~nI~I~n~~~~~~------~~gi~Igs~-~~g~i~nI~~~n~~i~~~~~gi~----Iks~~g~~-g~v 160 (280)
.-...++||.+... ...|..-+- ....-.-+.|.||++......+. .+.+-|+. +.-
T Consensus 361 -----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~y 429 (520)
T PLN02201 361 -----------DATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPWKLY 429 (520)
T ss_pred -----------CceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCCCCC
Confidence 24488999998752 122333221 12234569999999976432111 12222332 446
Q ss_pred EEEEEEeEEEcccCee
Q 023585 161 RNITVSDVYMENARKG 176 (280)
Q Consensus 161 ~nV~f~ni~~~~~~~~ 176 (280)
..+.|-+..|.+.-.|
T Consensus 430 srvv~~~t~l~~~I~p 445 (520)
T PLN02201 430 SRTVFMQNYMSDAIRP 445 (520)
T ss_pred ceEEEEecCcCCeEcc
Confidence 7888888888876444
No 111
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=52.11 E-value=48 Score=30.65 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=66.5
Q ss_pred CCeeEEEEeeecEEEEeEEEecCC-CcEEEeeeeeeEEEEeEEEEcCCC----CCCCCeeeC-CCCccEEEEeeEEEcCC
Q 023585 11 RPNLIEFMNSRSIIISNVIFQNSP-FWNIHPVYCSNVVIRYVTILAPAD----SPNTDGIDP-DSSSNVCIEDSYISTGD 84 (280)
Q Consensus 11 rP~~i~~~~~~nv~I~gi~i~ns~-~~~i~~~~~~nv~I~nv~I~~~~~----~~ntDGid~-~~s~nV~I~n~~i~~gD 84 (280)
.|....+..|.--+..-+...++. +|.. -.++..+|++|.+..+ ..|.-.+-+ ..++.+.++||.+...-
T Consensus 159 np~~~m~n~c~ss~~~tigt~~Sat~~v~----~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~Q 234 (405)
T COG4677 159 NPAGYMYNSCQSSRSATIGTLCSATFWVQ----NNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQ 234 (405)
T ss_pred Cccceeecccccchhhhhhhhhhhhheee----cCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeecc
Confidence 455555555553333333333333 3432 2456666666666542 111112222 14688999999998877
Q ss_pred ceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceecCCEEeEEEEeeEEEee
Q 023585 85 DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNV 144 (280)
Q Consensus 85 D~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~g~i~nI~~~n~~i~~~ 144 (280)
|-+-++.+.-..-+... -.-.-+++||++.+ +--+-+|+.+ ..|.+|.+.-.
T Consensus 235 dTlFv~~~~~~~~~~tn-~~~R~yftNsyI~G-dvDfIfGsgt------aVFd~c~i~~~ 286 (405)
T COG4677 235 DTLFVGNSGVQNRLETN-RQPRTYFTNSYIEG-DVDFIFGSGT------AVFDNCEIQVV 286 (405)
T ss_pred ceEEecCCCCccccccC-cchhhheecceecc-cceEEeccce------EEeccceEEEe
Confidence 77666654111100000 01145689999987 6677788753 57788887754
No 112
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=51.58 E-value=2.6e+02 Score=27.78 Aligned_cols=145 Identities=10% Similarity=0.067 Sum_probs=88.7
Q ss_pred CCeeEEEEeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCc
Q 023585 11 RPNLIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 85 (280)
Q Consensus 11 rP~~i~~~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD 85 (280)
+...+. ...+++..++|++.|... ..+-+. ..+...+.+|.|.+-. |-+-.. +..-..++|+|...=|
T Consensus 296 ~SaT~~-v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~IeGtVD 368 (530)
T PLN02933 296 QTATVG-VKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ-----DTLYVH-SAKQFYRECDIYGTID 368 (530)
T ss_pred cceEEE-EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-----cccccC-CCceEEEeeEEecccc
Confidence 333443 448899999999999753 233333 3688999999999965 333333 3456999999986544
Q ss_pred eEEEecCCCccCcccCCCeecEEEEeEEEeCCC------ceEEEcce-ecCCEEeEEEEeeEEEeeCcEEE----EEEEc
Q 023585 86 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSE-TSGGVENVLAEHINLYNVGVGIH----VKTNI 154 (280)
Q Consensus 86 ~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs~-~~g~i~nI~~~n~~i~~~~~gi~----Iks~~ 154 (280)
-| .| .-...++||.+.... ..|.--+- ....-.-+.|.||++........ .+.+-
T Consensus 369 FI---FG-----------~a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yL 434 (530)
T PLN02933 369 FI---FG-----------NAAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLIPVKENFKAYL 434 (530)
T ss_pred ee---cc-----------CceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceEe
Confidence 44 22 244788999986431 22322221 11234579999999987432111 12232
Q ss_pred CCC-ceEEEEEEEeEEEcccCee
Q 023585 155 GRG-GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 155 g~~-g~v~nV~f~ni~~~~~~~~ 176 (280)
|+. +.-..+.|.+..|.+.-.|
T Consensus 435 GRPW~~ysrvVf~~s~l~~~I~p 457 (530)
T PLN02933 435 GRPWRKYSRTVIIKSFIDDLIHP 457 (530)
T ss_pred ccCCCCCceEEEEecccCCeecc
Confidence 332 3457888888888876444
No 113
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=51.49 E-value=1.6e+02 Score=25.49 Aligned_cols=133 Identities=16% Similarity=0.096 Sum_probs=83.7
Q ss_pred eEEEEeeecEEEEeEEEecCCCcEEEeeeeeeEEEEeEEEEcCCCCCCCCeeeCCCCc-cEEEEeeEEEcCCceEEEecC
Q 023585 14 LIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSS-NVCIEDSYISTGDDLVAVKSG 92 (280)
Q Consensus 14 ~i~~~~~~nv~I~gi~i~ns~~~~i~~~~~~nv~I~nv~I~~~~~~~ntDGid~~~s~-nV~I~n~~i~~gDD~iaiksg 92 (280)
+|.+. +..+|+++.|-.+...+||..+ +-+|+||....- -.|.+.+.+.. .++|.+.-....+|-| +...
T Consensus 56 vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV-~Q~N 126 (215)
T PF03211_consen 56 VFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKV-FQHN 126 (215)
T ss_dssp SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEE-EEE-
T ss_pred EEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccE-EEec
Confidence 44443 6789999999777789999987 678888887662 24777776656 8888888888777765 3331
Q ss_pred CCccCcccCCCeecEEEEeEEEeCCCceEEEcce---ec--CCEEeEEEEeeEEEeeCcEEEEEEEcCCCceEEEEEEEe
Q 023585 93 WDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSE---TS--GGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSD 167 (280)
Q Consensus 93 ~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~---~~--g~i~nI~~~n~~i~~~~~gi~Iks~~g~~g~v~nV~f~n 167 (280)
..-.+.|+|-+.. +.|--.=|- .. +.=|.|.+++........-..|-...++...|+++.++.
T Consensus 127 ----------g~Gtv~I~nF~a~--d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 127 ----------GGGTVTIKNFYAE--DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp ----------SSEEEEEEEEEEE--EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred ----------CceeEEEEeEEEc--CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 1245888886553 333222221 11 244667777765544333345556677788888888776
No 114
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=49.78 E-value=1.3e+02 Score=25.44 Aligned_cols=13 Identities=31% Similarity=0.478 Sum_probs=6.1
Q ss_pred EEeEEEEeeEEEe
Q 023585 131 VENVLAEHINLYN 143 (280)
Q Consensus 131 i~nI~~~n~~i~~ 143 (280)
.+||++++..|+.
T Consensus 33 a~nVhIhhN~fY~ 45 (198)
T PF08480_consen 33 AKNVHIHHNIFYD 45 (198)
T ss_pred cccEEEECcEeec
Confidence 3344444444444
No 115
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=48.67 E-value=3e+02 Score=27.70 Aligned_cols=139 Identities=9% Similarity=0.067 Sum_probs=85.6
Q ss_pred EeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecC
Q 023585 18 MNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 92 (280)
Q Consensus 18 ~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg 92 (280)
...+++..++|+++|... ..+-+. ..+...+.+|.|.+-. |-+-.. +.+-..++|+|...=|-| .|
T Consensus 359 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q-----DTLy~~-~~rq~y~~c~I~GtvDFI---FG 429 (587)
T PLN02313 359 AVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ-----DTLYVH-SNRQFFVKCHITGTVDFI---FG 429 (587)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEeecccee---cc
Confidence 457899999999999753 233222 4688999999999855 333333 345689999998765554 22
Q ss_pred CCccCcccCCCeecEEEEeEEEeCCC------ceEEEcc-eecCCEEeEEEEeeEEEeeCcEE----EEEEEcCCC-ceE
Q 023585 93 WDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GFI 160 (280)
Q Consensus 93 ~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi----~Iks~~g~~-g~v 160 (280)
.-...++||.+.... ..|.--+ .....-.-+.|.||++....... ..+++-|+. ..-
T Consensus 430 -----------~a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 498 (587)
T PLN02313 430 -----------NAAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTSDLLAVKGTFPTYLGRPWKEY 498 (587)
T ss_pred -----------ceeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCCccccccccchhhccCCCCCC
Confidence 345889999986431 1233321 12234567999999998753211 122332332 334
Q ss_pred EEEEEEeEEEcccCee
Q 023585 161 RNITVSDVYMENARKG 176 (280)
Q Consensus 161 ~nV~f~ni~~~~~~~~ 176 (280)
..+.|-+..|.+.-.|
T Consensus 499 sr~v~~~s~i~~~I~p 514 (587)
T PLN02313 499 SRTVIMQSDISDVIRP 514 (587)
T ss_pred ccEEEEecccCCeEcC
Confidence 5667777777665333
No 116
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=44.37 E-value=2e+02 Score=27.66 Aligned_cols=66 Identities=27% Similarity=0.499 Sum_probs=37.2
Q ss_pred CeecEEEEeEEEeCC-CceEEEcceec--------C-----------CEEeEEEEeeEEEeeCcEEEEEEEcCCCceEEE
Q 023585 103 PSSGITIRRVTGSSP-FSGIAVGSETS--------G-----------GVENVLAEHINLYNVGVGIHVKTNIGRGGFIRN 162 (280)
Q Consensus 103 ~~~nI~I~n~~~~~~-~~gi~Igs~~~--------g-----------~i~nI~~~n~~i~~~~~gi~Iks~~g~~g~v~n 162 (280)
.+.|+.++|...... .+|+-+|+.+. + --.|=.++|+..+++ .|+.+.- .|.+++|+|
T Consensus 262 RnYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~~-DG~~~yvsn 339 (549)
T PF09251_consen 262 RNYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIGM-DGKGGYVSN 339 (549)
T ss_dssp -EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEE-ECCS-EEEE
T ss_pred ceeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeeee-cCCCceEee
Confidence 478999999986554 88999987521 1 124556666666665 3444442 467899999
Q ss_pred EEEEeEEE
Q 023585 163 ITVSDVYM 170 (280)
Q Consensus 163 V~f~ni~~ 170 (280)
|+.+++.-
T Consensus 340 i~~~d~~g 347 (549)
T PF09251_consen 340 ITVQDCAG 347 (549)
T ss_dssp EEEES-SS
T ss_pred EEeecccC
Confidence 98887653
No 117
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=43.83 E-value=1.2e+02 Score=28.09 Aligned_cols=64 Identities=14% Similarity=0.031 Sum_probs=39.2
Q ss_pred CccEEEEeeEEEcCC----ceEEEecCCCccCcccCCCeecEEEEeEEEeCCCceEEEcceec----C--CEEeEEEEee
Q 023585 70 SSNVCIEDSYISTGD----DLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETS----G--GVENVLAEHI 139 (280)
Q Consensus 70 s~nV~I~n~~i~~gD----D~iaiksg~~~~g~~~~~~~~nI~I~n~~~~~~~~gi~Igs~~~----g--~i~nI~~~n~ 139 (280)
++|++|+|..-.+-+ -++++.. ....+.++||.+.+..+-+-.|.... + ..-.-+|+||
T Consensus 193 ~~nlT~en~~gd~~lagn~~AVaL~~-----------dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNs 261 (405)
T COG4677 193 LQNLTIENTLGDGVLAGNHPAVALAT-----------DGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNS 261 (405)
T ss_pred cccceeecccCCccccCCceeEEEEe-----------cCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecc
Confidence 578888876543321 1233332 24668899999988877888775421 1 1224468888
Q ss_pred EEEee
Q 023585 140 NLYNV 144 (280)
Q Consensus 140 ~i~~~ 144 (280)
.|++-
T Consensus 262 yI~Gd 266 (405)
T COG4677 262 YIEGD 266 (405)
T ss_pred eeccc
Confidence 88763
No 118
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=40.88 E-value=3.9e+02 Score=26.86 Aligned_cols=139 Identities=12% Similarity=0.093 Sum_probs=87.4
Q ss_pred EeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecC
Q 023585 18 MNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 92 (280)
Q Consensus 18 ~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg 92 (280)
...+++..++|++.|... -.+-+. ..+...+.+|.+.+-. |-+-.. +..-..++|+|.-.=|-| .|
T Consensus 357 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI---FG 427 (587)
T PLN02484 357 ATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ-----DTLYVH-SNRQFFRECDIYGTVDFI---FG 427 (587)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC-----cccccC-CCcEEEEecEEEecccee---cc
Confidence 458899999999999743 233332 3688999999999965 333333 346689999998654544 22
Q ss_pred CCccCcccCCCeecEEEEeEEEeCCC------ceEEEcce-ecCCEEeEEEEeeEEEeeCcE----EEEEEEcCCC-ceE
Q 023585 93 WDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSE-TSGGVENVLAEHINLYNVGVG----IHVKTNIGRG-GFI 160 (280)
Q Consensus 93 ~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs~-~~g~i~nI~~~n~~i~~~~~g----i~Iks~~g~~-g~v 160 (280)
.-...++||.+.... ..|.--+- ....-.-+.|.||++...... -..+++-|+. +.-
T Consensus 428 -----------~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 496 (587)
T PLN02484 428 -----------NAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPWKLY 496 (587)
T ss_pred -----------cceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCCCCCC
Confidence 345889999987521 22222221 112346799999999864321 0223333332 446
Q ss_pred EEEEEEeEEEcccCee
Q 023585 161 RNITVSDVYMENARKG 176 (280)
Q Consensus 161 ~nV~f~ni~~~~~~~~ 176 (280)
..+.|-+..|.+.-.|
T Consensus 497 srvV~~~s~i~~~I~p 512 (587)
T PLN02484 497 SRTVYMMSYMGDHIHP 512 (587)
T ss_pred ceEEEEecccCCeEcc
Confidence 7888888888876444
No 119
>PF12251 zf-SNAP50_C: snRNA-activating protein of 50kDa MW C terminal; InterPro: IPR022042 This domain family is found in eukaryotes, and is typically between 196 and 207 amino acids in length. There is a conserved CEH sequence motif. SNAP50 is part of the snRNA-activating protein complex which activates RNA polymerases II and III. There is a cysteine-histidine cluster which contains two possible zinc finger motifs.
Probab=37.96 E-value=50 Score=28.10 Aligned_cols=44 Identities=16% Similarity=0.410 Sum_probs=35.0
Q ss_pred EEEEeeecEEEEeEEEe-cCCCcEEEeeeeee-EEEEeEEEEcCCC
Q 023585 15 IEFMNSRSIIISNVIFQ-NSPFWNIHPVYCSN-VVIRYVTILAPAD 58 (280)
Q Consensus 15 i~~~~~~nv~I~gi~i~-ns~~~~i~~~~~~n-v~I~nv~I~~~~~ 58 (280)
+....-.+.++.+++++ ..|++-+|-.+|++ ++++++++..+.+
T Consensus 76 ~~~~~m~~~~f~dL~irlG~py~y~HqG~CEH~ivf~diRl~~~~d 121 (196)
T PF12251_consen 76 FKVAKMEDTRFNDLNIRLGQPYLYCHQGNCEHLIVFSDIRLLHPDD 121 (196)
T ss_pred cccccccceEEeccEEccCCCEEEEEcCCccEEEEEEeeEeecCcc
Confidence 44455667788888875 77888899999998 7889999998765
No 120
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=33.06 E-value=5.2e+02 Score=25.94 Aligned_cols=142 Identities=12% Similarity=0.092 Sum_probs=86.8
Q ss_pred eEEEEeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEE
Q 023585 14 LIEFMNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVA 88 (280)
Q Consensus 14 ~i~~~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~ia 88 (280)
.+.+ ..+++..++|++.|... -.+-+. ..+...+.+|.|.+-.| -+-.. +.+-..++|+|...=|-|
T Consensus 341 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI- 412 (572)
T PLN02990 341 TVAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQD-----TLYVH-SHRQFFRDCTVSGTVDFI- 412 (572)
T ss_pred EEEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccc-----hhccC-CCcEEEEeeEEecccceE-
Confidence 3443 47899999999999754 233332 36889999999998553 33333 345688999998654554
Q ss_pred EecCCCccCcccCCCeecEEEEeEEEeCCC------ceEEEcc-eecCCEEeEEEEeeEEEeeCcEEE----EEEEcCCC
Q 023585 89 VKSGWDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGS-ETSGGVENVLAEHINLYNVGVGIH----VKTNIGRG 157 (280)
Q Consensus 89 iksg~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs-~~~g~i~nI~~~n~~i~~~~~gi~----Iks~~g~~ 157 (280)
.| .-...++||.+.... .-|.--+ .....-.-+.|.||++........ .+++-|+.
T Consensus 413 --FG-----------~a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRp 479 (572)
T PLN02990 413 --FG-----------DAKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRP 479 (572)
T ss_pred --cc-----------CceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCccccccccccceEeecC
Confidence 22 244888999986431 1122211 111234579999999987532111 12232332
Q ss_pred -ceEEEEEEEeEEEcccCee
Q 023585 158 -GFIRNITVSDVYMENARKG 176 (280)
Q Consensus 158 -g~v~nV~f~ni~~~~~~~~ 176 (280)
..-..+.|.+..|.+.-.|
T Consensus 480 W~~ysrvV~~~s~i~~~I~p 499 (572)
T PLN02990 480 WKEFSRTIIMGTTIDDVIDP 499 (572)
T ss_pred CCCCceEEEEecccCCeecc
Confidence 3456788888888775444
No 121
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=27.45 E-value=6.1e+02 Score=25.03 Aligned_cols=139 Identities=15% Similarity=0.123 Sum_probs=86.2
Q ss_pred EeeecEEEEeEEEecCCC----cEEEee-eeeeEEEEeEEEEcCCCCCCCCeeeCCCCccEEEEeeEEEcCCceEEEecC
Q 023585 18 MNSRSIIISNVIFQNSPF----WNIHPV-YCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 92 (280)
Q Consensus 18 ~~~~nv~I~gi~i~ns~~----~~i~~~-~~~nv~I~nv~I~~~~~~~ntDGid~~~s~nV~I~n~~i~~gDD~iaiksg 92 (280)
...+++..++|+++|... -.+-+. ..+...+.+|.|.+-. |-+-.. +.+-..++|+|...=|-| + |
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQ-----DTLy~~-~~RqyyrdC~I~GtVDFI-F--G 351 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQ-----DALYPH-RDRQFYRECFITGTVDFI-C--G 351 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccC-----cceeeC-CCCEEEEeeEEeeccceE-e--c
Confidence 347889999999999753 233333 3688999999999865 334333 456799999998765554 2 2
Q ss_pred CCccCcccCCCeecEEEEeEEEeCCC------ceEEEcce-ecCCEEeEEEEeeEEEeeCcEE----EEEEEcCCC-ceE
Q 023585 93 WDEYGIAYGHPSSGITIRRVTGSSPF------SGIAVGSE-TSGGVENVLAEHINLYNVGVGI----HVKTNIGRG-GFI 160 (280)
Q Consensus 93 ~~~~g~~~~~~~~nI~I~n~~~~~~~------~gi~Igs~-~~g~i~nI~~~n~~i~~~~~gi----~Iks~~g~~-g~v 160 (280)
.-.+.++||.+.... .-|.-.+- ....-.-+.|.||++....... ..+++-|+. ..-
T Consensus 352 -----------~a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~y 420 (509)
T PLN02488 352 -----------NAAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKY 420 (509)
T ss_pred -----------ceEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCC
Confidence 355889999987531 12222221 1123456999999998754211 123333332 345
Q ss_pred EEEEEEeEEEcccCee
Q 023585 161 RNITVSDVYMENARKG 176 (280)
Q Consensus 161 ~nV~f~ni~~~~~~~~ 176 (280)
+.+.|-+..|.+.-.|
T Consensus 421 SrvVf~~s~i~~~I~P 436 (509)
T PLN02488 421 STVAVLQSFIGDLVDP 436 (509)
T ss_pred ccEEEEeccCCCeecc
Confidence 6677777777765333
No 122
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=25.60 E-value=2.8e+02 Score=26.64 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=12.2
Q ss_pred CccEEEEeeEEEcCC---ceEEEecC
Q 023585 70 SSNVCIEDSYISTGD---DLVAVKSG 92 (280)
Q Consensus 70 s~nV~I~n~~i~~gD---D~iaiksg 92 (280)
..+.+|++..|..-| .-|++||+
T Consensus 198 ~s~t~Ve~NlFe~cdGE~EIISvKS~ 223 (425)
T PF14592_consen 198 DSNTTVENNLFERCDGEVEIISVKSS 223 (425)
T ss_dssp ----EEES-EEEEE-SSSEEEEEESB
T ss_pred ccceeeecchhhhcCCceeEEEeecC
Confidence 467888888776543 45888874
Done!