BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023586
(280 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/293 (82%), Positives = 259/293 (88%), Gaps = 14/293 (4%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS A S+G EMLGNPLN S A R++AP +S PST K VALFSKKKAAPP K+
Sbjct: 1 MASLAASRA-AGSLGVSEMLGNPLNFSGATRSAAPTSSTPSTLKTVALFSKKKAAPPPKA 59
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSPV++ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 60 KPAAVSPVDDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 119
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
+KYQAYELIHARWAMLGAAGFI+PEAFNKFGANCGPEAVWFKTGALLLDG TLNYFG +I
Sbjct: 120 AKYQAYELIHARWAMLGAAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSI 179
Query: 181 PINLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
PINLV AVIAE+V LDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIK
Sbjct: 180 PINLVVAVIAEVVLLGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIK 239
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
NGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTV++G+AERAPTL
Sbjct: 240 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVLAGSAERAPTL 292
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 233/279 (83%), Positives = 243/279 (87%), Gaps = 15/279 (5%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A RT AP AS+P+TFK VALFSKKKAAP VSP +EELAK
Sbjct: 14 GVSEMLGNPLNFSGASRT-APSASSPATFKTVALFSKKKAAPAKAKP-APVSPADEELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIP YLTGEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWA
Sbjct: 72 WYGPDRRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 131
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV- 193
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+FAV+AE+V
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVL 191
Query: 194 ------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
LDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGFF+
Sbjct: 192 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFFI 251
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
QAYVTGEGPVENLA HLSDPF NNLLTVI+G AERAPTL
Sbjct: 252 QAYVTGEGPVENLAAHLSDPFGNNLLTVIAGTAERAPTL 290
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust.
Identities = 237/293 (80%), Positives = 252/293 (86%), Gaps = 19/293 (6%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ E+LGNP+N+ A R SAP + P+TFK VALFSKKK APP K
Sbjct: 1 MASLAASTA-----AMSEILGNPVNLRCATR-SAPSPTTPATFKTVALFSKKKPAPPPKK 54
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 55 KPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 114
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
+KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK I
Sbjct: 115 AKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPI 174
Query: 181 PINLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
PINL+ AV+AEIV LDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIK
Sbjct: 175 PINLILAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIK 234
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
NGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 235 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 287
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 236/293 (80%), Positives = 251/293 (85%), Gaps = 19/293 (6%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ E+LGNP+N+ A R SAP + P+TFK VALFSKKK APP K
Sbjct: 1 MASLAASTA-----AMSEILGNPVNLRCATR-SAPSPTTPATFKTVALFSKKKPAPPPKK 54
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP AVSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF
Sbjct: 55 KPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDF 114
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
+KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK I
Sbjct: 115 AKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPI 174
Query: 181 PINLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
PIN + AV+AEIV LDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIK
Sbjct: 175 PINFILAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIK 234
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
NGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 235 NGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 287
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/279 (82%), Positives = 243/279 (87%), Gaps = 15/279 (5%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A R+++P AS P+TFK VALFSKKK A K KP AVSP + ELAK
Sbjct: 14 GVSEMLGNPLNFSGATRSASPAASTPATFKTVALFSKKKPA--PKPKPSAVSPADVELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV- 193
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVIL 191
Query: 194 ------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
L +DKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGFF
Sbjct: 192 VGGAEYFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFF 251
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAP+L
Sbjct: 252 QAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPSL 290
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/294 (80%), Positives = 249/294 (84%), Gaps = 20/294 (6%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MASLAAS+ EMLGNP+++ A R SAP S P TFK VALFSKKKAAPP
Sbjct: 1 MASLAASTA-----AMSEMLGNPVSLRGATR-SAPSPSTPVTFKTVALFSKKKAAPPPPK 54
Query: 61 KPVA-VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
K A VSP NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+D
Sbjct: 55 KKPAAVSPANEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPED 114
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
F+KYQA+ELIHARWAMLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK
Sbjct: 115 FAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKP 174
Query: 180 IPINLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEI 226
IPINL+ AV+AEIV LDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEI
Sbjct: 175 IPINLIVAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEI 234
Query: 227 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
KNGRLAMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+ ERAPTL
Sbjct: 235 KNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPTL 288
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/284 (78%), Positives = 241/284 (84%), Gaps = 14/284 (4%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPG-ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVN 69
A S+ EMLG+P+ S R +AP AS+P+TFK VALF KK AA P K+K A SP++
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPTPASSPATFKTVALFKKKSAAAPVKAKAAAASPLD 63
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
+ELAKWYGPDRRIFLPEGLLD+SEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELI
Sbjct: 64 DELAKWYGPDRRIFLPEGLLDKSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELI 123
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 189
HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTL YFGKNIPINLV AVI
Sbjct: 124 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLYYFGKNIPINLVLAVI 183
Query: 190 AEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
AE+V LDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMF+M
Sbjct: 184 AEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSM 243
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
LGFF+QAYVTG+GPVENLA HLSDPF NNLLTVI G ER PTL
Sbjct: 244 LGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVIGGATERVPTL 287
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/279 (79%), Positives = 233/279 (83%), Gaps = 17/279 (6%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EML NPL+ SS SAP S P+TFK VALF KK AAP A VN+ELAK
Sbjct: 14 GVSEMLRNPLSFSS---RSAPSPSTPATFKTVALFGKKPAAPAKPKPSAASP-VNDELAK 69
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWA
Sbjct: 70 WYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWA 129
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV- 193
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG NIPINL+ AVIAE+V
Sbjct: 130 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVL 189
Query: 194 ------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
L+ EDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMFAMLGF+
Sbjct: 190 VGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYF 249
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
QAYVTGEGPVENLAKHLSDPF NNLLTVISGNAER PTL
Sbjct: 250 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERVPTL 288
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust.
Identities = 215/283 (75%), Positives = 233/283 (82%), Gaps = 15/283 (5%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+G EMLG PLN + R SAP AS P+TFK VALFSKKK A K VS N+
Sbjct: 3 ATSLGVSEMLGTPLNFRAVSRPSAPLASIPATFKTVALFSKKKPA--PPPKAKTVSAAND 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIH
Sbjct: 61 ELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
ARWAMLGAAG IIPEA NK+GANCGPEAVWFKTGALLLDGNTL+YFGKNIPINLV AV+
Sbjct: 121 ARWAMLGAAGCIIPEALNKYGANCGPEAVWFKTGALLLDGNTLSYFGKNIPINLVLAVVG 180
Query: 191 EIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 237
E+V LD EDKLHPGGPFDPL LAKDP+Q ALLKVKEIKNGRLAMF+M
Sbjct: 181 EVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLDLAKDPEQGALLKVKEIKNGRLAMFSMF 240
Query: 238 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
FF+QAYVTGEGPVENL+KHLSDPF NNLLTVI+G AERAPTL
Sbjct: 241 AFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIAGTAERAPTL 283
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/279 (79%), Positives = 239/279 (85%), Gaps = 14/279 (5%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N S A R + AS+P++FK VALFSKKKA P K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINFSGATRPAPS-ASSPASFKTVALFSKKKATPTPPKKAAAAAPANDELAK 72
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DF+KYQA+ELIHARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWA 132
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV- 193
MLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIV
Sbjct: 133 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVL 192
Query: 194 ------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
L+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+
Sbjct: 193 VGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF 252
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+AERAPTL
Sbjct: 253 QAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSAERAPTL 291
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/279 (80%), Positives = 240/279 (86%), Gaps = 16/279 (5%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N+S A R + AS+P++FK VALFSKKKAA K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINLSGATRPAPS-ASSPASFKTVALFSKKKAA--PPKKAAAAAPANDELAK 70
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP+DFSKYQA+ELIHARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWA 130
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV- 193
MLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIV
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVL 190
Query: 194 ------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
L+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+
Sbjct: 191 VGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF 250
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
QAYVTGEGPVENLAKHLSDPF NNLLTVISG+AERAPTL
Sbjct: 251 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289
>gi|297809249|ref|XP_002872508.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
gi|297318345|gb|EFH48767.1| hypothetical protein ARALYDRAFT_489877 [Arabidopsis lyrata subsp.
lyrata]
Length = 280
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/282 (79%), Positives = 242/282 (85%), Gaps = 16/282 (5%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+P+TFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPATFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
RWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178
Query: 192 IV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 238
+V LD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLG
Sbjct: 179 VVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 238
Query: 239 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
FF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 239 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/279 (80%), Positives = 239/279 (85%), Gaps = 16/279 (5%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNP+N+S A R + AS+P++FK VALFSKKKAA K A +P N+ELAK
Sbjct: 14 GMSEMLGNPINLSGATRPAPS-ASSPASFKTVALFSKKKAA--PPKKAAAAAPANDELAK 70
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP GLSKKP+DFSKYQA+ELIHARWA
Sbjct: 71 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWA 130
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV- 193
MLGAAGFIIPEAFNK+GANCGPEAVWFKTGALLLDG TLNYFGK IPINL+ AVIAEIV
Sbjct: 131 MLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVL 190
Query: 194 ------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
L+ EDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMFAMLGF+
Sbjct: 191 VGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYF 250
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
QAYVTGEGPVENLAKHLSDPF NNLLTVISG+AERAPTL
Sbjct: 251 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGSAERAPTL 289
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/283 (77%), Positives = 238/283 (84%), Gaps = 13/283 (4%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+ EMLG+P+ S R +AP S+ +TFK VALF KK AA PAK+K AVSP ++
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPSPSSSATFKTVALFKKKAAAAPAKAKAAAVSPADD 63
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSEIPEYL GEVPG+YGYDPFGLSKKP+DF+KYQAYELIH
Sbjct: 64 ELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIH 123
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV----- 185
ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL+
Sbjct: 124 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLILAVVA 183
Query: 186 ------FAVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 237
A I+ LDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMF+ML
Sbjct: 184 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFSML 243
Query: 238 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
GFF+QAYVTG+GPVENLA HLSDPF NNLLTVI G +ER PTL
Sbjct: 244 GFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVIGGASERVPTL 286
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/288 (72%), Positives = 233/288 (80%), Gaps = 25/288 (8%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ ++LG LN + + R T+AP A K V+LFSKK P K KP AVS
Sbjct: 2 AALAPSKILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPAAVSSSS 55
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQA
Sbjct: 56 PDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQA 115
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185
YELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINLV
Sbjct: 116 YELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLV 175
Query: 186 FAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
AVIAE+V LDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLA
Sbjct: 176 VAVIAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLA 235
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
MF+M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 236 MFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/288 (72%), Positives = 233/288 (80%), Gaps = 25/288 (8%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ ++LG LN + + R T+AP A K V+LFSKK P K KP AVS
Sbjct: 2 AALAPSKILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPAAVSSSS 55
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQA
Sbjct: 56 PDISDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQA 115
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185
YELIHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINLV
Sbjct: 116 YELIHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLV 175
Query: 186 FAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
AVIAE++ LDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLA
Sbjct: 176 VAVIAEVILVGGAEYYRITNGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLA 235
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
MF+M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 236 MFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 220/282 (78%), Positives = 234/282 (82%), Gaps = 17/282 (6%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG+PL + A R S+ AS P+ K VALFSKKKAA P N+E
Sbjct: 2 ASLGVSEMLGSPLKFAVASRPSSASASTPA--KIVALFSKKKAA--PAKTKAPPPPANDE 57
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSE+P YL GEVPGDYGYDPFGL KKP+DF+KYQAYELIHA
Sbjct: 58 LAKWYGPDRRIFLPDGLLDRSEVPAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHA 117
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AVIAE
Sbjct: 118 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVIAE 177
Query: 192 IV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 238
+V LDLEDKLHPGGPFDPLGLA DPDQ A+LK KEIKNGRLAMFAMLG
Sbjct: 178 VVLLGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKAKEIKNGRLAMFAMLG 237
Query: 239 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
FFLQAYVTGEGPVENL+KHLSDPF NNLLTVIS +AER PTL
Sbjct: 238 FFLQAYVTGEGPVENLSKHLSDPFGNNLLTVISSSAERVPTL 279
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/282 (74%), Positives = 231/282 (81%), Gaps = 25/282 (8%)
Query: 18 EMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP----VNEE 71
++LG LN + + R T+AP A K V+LFSKK P K KPV VS +++E
Sbjct: 7 KILGTQLNFAGSSRYATAAPTAG---AQKIVSLFSKK---PAQKPKPVPVSSSSPDISDE 60
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQAYELIHA
Sbjct: 61 LAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHA 120
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
RWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINLV AVIAE
Sbjct: 121 RWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLVVAVIAE 180
Query: 192 IV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 238
+V LDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMF+ML
Sbjct: 181 VVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMLA 240
Query: 239 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 241 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 282
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/285 (72%), Positives = 232/285 (81%), Gaps = 19/285 (6%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ ++LG LN + + R T+AP A K V+LFSKK A P S + SP +
Sbjct: 2 AALAPSKILGTKLNFAGSSRYATAAPTAG---AQKIVSLFSKKPAQKPKPSAVSSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQAYEL
Sbjct: 59 SDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYEL 118
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AV
Sbjct: 119 IHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAV 178
Query: 189 IAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
IAE+V LDLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMF+
Sbjct: 179 IAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFS 238
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
M FF+QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 239 MFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 224/283 (79%), Positives = 244/283 (86%), Gaps = 14/283 (4%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNE 70
A S+ EMLG+P+ S R +AP S+P+TFK VALF KK AA PAK VA++P +E
Sbjct: 4 ATSLYVSEMLGSPVKFSGVARPAAPTPSSPATFKTVALFKKKAAAAPAKKA-VAIAPADE 62
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIH
Sbjct: 63 ELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIH 122
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
ARWAMLGAAGF+IPEAFNKFGA+CGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+A
Sbjct: 123 ARWAMLGAAGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVA 182
Query: 191 EIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 237
E+V LDLEDKLHPGGPFDPLGLAKDPDQ A+LKVKEIKNGRLAMFAML
Sbjct: 183 EVVLLGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAML 242
Query: 238 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
GFF+QAYVTG+GPVENLA HLSDPF NNLLTVI+G AERAPTL
Sbjct: 243 GFFIQAYVTGKGPVENLAAHLSDPFGNNLLTVIAGTAERAPTL 285
>gi|15235029|ref|NP_192772.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
gi|28558077|sp|Q9XF89.1|CB5_ARATH RecName: Full=Chlorophyll a-b binding protein CP26, chloroplastic;
AltName: Full=LHCB5; AltName: Full=LHCIIc; AltName:
Full=Light-harvesting complex II protein 5; Flags:
Precursor
gi|4741958|gb|AAD28776.1|AF134129_1 Lhcb5 protein [Arabidopsis thaliana]
gi|11908106|gb|AAG41482.1|AF326900_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642916|gb|AAK00400.1|AF339718_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|14190463|gb|AAK55712.1|AF380631_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|15983446|gb|AAL11591.1|AF424597_1 AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|4538963|emb|CAB39787.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|7267731|emb|CAB78157.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
gi|15809718|gb|AAL06787.1| AT4g10340/F24G24_140 [Arabidopsis thaliana]
gi|332657469|gb|AEE82869.1| chlorophyll a-b binding protein CP26 [Arabidopsis thaliana]
Length = 280
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/282 (79%), Positives = 242/282 (85%), Gaps = 16/282 (5%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+PSTFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
RWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178
Query: 192 IV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 238
+V LD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLG
Sbjct: 179 VVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 238
Query: 239 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
FF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 239 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|21593520|gb|AAM65487.1| chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
Length = 280
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 224/282 (79%), Positives = 242/282 (85%), Gaps = 16/282 (5%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
AS+G EMLG PLN + R+SAP AS+PSTFK VALFSKKK A +K AVS ++E
Sbjct: 2 ASLGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPA---PAKSKAVSETSDE 58
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
LAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHA
Sbjct: 59 LAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHA 118
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE 191
RWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE
Sbjct: 119 RWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAE 178
Query: 192 IV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 238
+V LD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNGRLAMFAMLG
Sbjct: 179 VVLLGGSEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLG 238
Query: 239 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
FF+QAYVTGEGPVENLAKHLSDPF NNLLTVI+G AERAPTL
Sbjct: 239 FFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPTL 280
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 210/303 (69%), Positives = 236/303 (77%), Gaps = 23/303 (7%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGLSKKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 NTLNYFGKNIPINLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQ 217
TL+YFG +IPINL+ AV+AE++ LD EDKLHPGGPFDPLGLAKDPDQ
Sbjct: 181 GTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQ 240
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 277
FALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTV+ G+ ERA
Sbjct: 241 FALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERA 300
Query: 278 PTL 280
PTL
Sbjct: 301 PTL 303
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 211/285 (74%), Positives = 229/285 (80%), Gaps = 19/285 (6%)
Query: 12 ASIGAKEMLGNPLN--VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ +MLG LN VSS T+AP K V+LFSKK A P + + SP +
Sbjct: 2 AALAPSKMLGTRLNFAVSSRYATAAP---TTGAQKIVSLFSKKPAPKPKPAAVTSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
+ELAKWYGPDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSKKP+DFSKYQAYEL
Sbjct: 59 GDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYEL 118
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF-- 186
IHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 119 IHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAV 178
Query: 187 ---------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
A I+ LDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+
Sbjct: 179 AAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFS 238
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
MLGFF+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 239 MLGFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 209/303 (68%), Positives = 236/303 (77%), Gaps = 23/303 (7%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGLSKKP++F KYQAYELIHARWAMLGAAGFI+PEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIMPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 NTLNYFGKNIPINLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQ 217
TL+YFG +IPINL+ AV+AE++ LD EDKLHPGGPFDPLGLAKDPDQ
Sbjct: 181 GTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQ 240
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 277
FALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTV+ G+ ERA
Sbjct: 241 FALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERA 300
Query: 278 PTL 280
PTL
Sbjct: 301 PTL 303
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 206/286 (72%), Positives = 225/286 (78%), Gaps = 21/286 (7%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP---- 67
A++ +MLG LN + + R AP A K V+LFSKK P K+KP S
Sbjct: 2 AALAPTKMLGTRLNFAGSSRY-APAAPTSGAQKIVSLFSKK---PAQKAKPATASSSGSD 57
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
+ +ELAKWYGPDRRIFLPEGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++YQAYE
Sbjct: 58 IGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYE 117
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF- 186
LIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLL+GNTLNYFG +IPINL
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVA 177
Query: 187 ----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
A I+ LDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF
Sbjct: 178 VVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMF 237
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
+MLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVIS AER P+L
Sbjct: 238 SMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISAGAERTPSL 283
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/303 (68%), Positives = 235/303 (77%), Gaps = 23/303 (7%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGLSKKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 NTLNYFGKNIPINLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQ 217
TL+YFG +I INL+ AV+AE++ LD EDKLHPGGPFDPLGLAKDPDQ
Sbjct: 181 GTLSYFGASIHINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQ 240
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 277
FALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTV+ G+ ERA
Sbjct: 241 FALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERA 300
Query: 278 PTL 280
PTL
Sbjct: 301 PTL 303
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 209/303 (68%), Positives = 235/303 (77%), Gaps = 23/303 (7%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGL KKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLIKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 NTLNYFGKNIPINLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQ 217
TL+YFG +IPINL+ AV+AE++ LD EDKLHPGGPFDPLGLAKDPDQ
Sbjct: 181 GTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQ 240
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 277
FALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTV+ G+ ERA
Sbjct: 241 FALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERA 300
Query: 278 PTL 280
PTL
Sbjct: 301 PTL 303
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 207/283 (73%), Positives = 227/283 (80%), Gaps = 15/283 (5%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF---- 186
ARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAA 180
Query: 187 -------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 237
A I+ LDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+ML
Sbjct: 181 EVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSML 240
Query: 238 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
GFF+QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 241 GFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 283
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/288 (72%), Positives = 228/288 (79%), Gaps = 22/288 (7%)
Query: 12 ASIGAKEMLGNPLNV--SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ +MLG LN SS+ T+AP A K V+LF P AK KP VS
Sbjct: 2 AALAPTKMLGTRLNFTGSSSYTTAAPTAGAK---KIVSLFGGFNKKPAAKPKPAPVSSSG 58
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRIFLP+GLLDRSE+PEYL GEVPGDYGYDPFGLSKKPDDF+KYQA
Sbjct: 59 ADIDDELAKWYGPDRRIFLPDGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPDDFTKYQA 118
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185
YELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 119 YELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLI 178
Query: 186 -----------FAVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
A I+ LDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLA
Sbjct: 179 LAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLA 238
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
MF+MLGFF+QAYVTGEGPVENL+ HLSDPF NNLLTVISG AER P+L
Sbjct: 239 MFSMLGFFIQAYVTGEGPVENLSAHLSDPFGNNLLTVISGAAERTPSL 286
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 202/249 (81%), Positives = 215/249 (86%), Gaps = 15/249 (6%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S A R+++P A+ P+TFK VALFSKKKAA K KP AVSP + ELAK
Sbjct: 14 GVSEMLGNPLNFSGATRSASPAATTPATFKTVALFSKKKAA--PKPKPSAVSPADVELAK 71
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF KYQA+ELIHARWA
Sbjct: 72 WYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWA 131
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV- 193
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE++
Sbjct: 132 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVIL 191
Query: 194 ------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
L +DKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRLAMFAMLGFFL
Sbjct: 192 VGGAEYFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFL 251
Query: 242 QAYVTGEGP 250
QAYVTG+ P
Sbjct: 252 QAYVTGDVP 260
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/225 (82%), Positives = 201/225 (89%), Gaps = 13/225 (5%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
+EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDPFGLSKKP++F KYQAYEL
Sbjct: 54 SEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYEL 113
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG TL+YFG +IPINL+ AV
Sbjct: 114 IHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAV 173
Query: 189 IAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
+AE++ LD EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF+
Sbjct: 174 VAEVILVGGAEYYRATNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFS 233
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTV+ G+ ERAPTL
Sbjct: 234 MLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL 278
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 204/286 (71%), Positives = 222/286 (77%), Gaps = 21/286 (7%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP---- 67
A++ +MLG LN + + R AP A K V+LFSKK P K+KP S
Sbjct: 2 AALAPTKMLGTRLNFAGSSRY-APAAPTSGAQKIVSLFSKK---PAQKAKPATASSSGSD 57
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
+ +ELAKWYGPDRRIFL EGLLDRSE+PEYL GEVPGDYGYDPFGLSK PD+F++YQAYE
Sbjct: 58 IGDELAKWYGPDRRIFLLEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYE 117
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF- 186
LIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLL+GNTLNYFG +IPINL
Sbjct: 118 LIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLEGNTLNYFGNSIPINLAVA 177
Query: 187 ----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
A I+ LDLE KLHPGGPFDPLGLA DPDQ A LKVKEIKNGRLAMF
Sbjct: 178 VVAEVVLVGGAEYYRIINGLDLEGKLHPGGPFDPLGLASDPDQAAPLKVKEIKNGRLAMF 237
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
MLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVIS AERAP+L
Sbjct: 238 PMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISAGAERAPSL 283
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 200/288 (69%), Positives = 227/288 (78%), Gaps = 22/288 (7%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-- 67
A++ +MLG L+ + + R T+AP A K V+LF + P K KP V+
Sbjct: 2 AALAPTKMLGTRLDFAGSSRYATAAPTAGAQ---KIVSLFDRFNKKPAPKPKPAPVATSS 58
Query: 68 --VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+++ELAKWYGPDRRI+LP GLLDRSE+PEYL GEVPGDYGYDPFGL KKP+DF+KYQA
Sbjct: 59 AGIDDELAKWYGPDRRIYLPNGLLDRSEVPEYLNGEVPGDYGYDPFGLGKKPEDFAKYQA 118
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185
+ELIHARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 119 FELIHARWAMLGAAGFIIPEALNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLI 178
Query: 186 FAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
AV+AE+V L+ +DKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLA
Sbjct: 179 LAVVAEVVLVGGAEYYRITNGLEFDDKLHPGGPFDPLGLATDPDQAALLKVKEIKNGRLA 238
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
MF+MLGFF+QAYVTGEGP ENL HLSDPF NNLLTVISG AER P+L
Sbjct: 239 MFSMLGFFIQAYVTGEGPFENLCAHLSDPFGNNLLTVISGAAERVPSL 286
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/303 (66%), Positives = 230/303 (75%), Gaps = 24/303 (7%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGA-----SNPSTFKPVALFS----- 50
MAS+ A + AA A ++L NPLN++ ++A ++PS + V+LF
Sbjct: 1 MASMRALGSTAALGRADQILWNPLNLNKLAASTAASRSSTRPTSPS-LQVVSLFGFKKKA 59
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
PP A +P EELAKWYGPDRRIFLPEGLLDR +IPEYL GEVPGDYGYDP
Sbjct: 60 APPPPPPKSKAKAAAAPATEELAKWYGPDRRIFLPEGLLDRDDIPEYLNGEVPGDYGYDP 119
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGL +KP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 120 FGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 179
Query: 171 NTLNYFGKNIPINLVFAVI-------------AEIVLDLEDKLHPGGPFDPLGLAKDPDQ 217
TL+YFG +IPINL+ AV+ A L+ +DKLHPGGPFDPLGLAKDPDQ
Sbjct: 180 GTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLNFDDKLHPGGPFDPLGLAKDPDQ 239
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 277
FALLKVKEIKNGRLAMF+MLGFFLQAYVTGEGPVENLA HLSDPF NN+LTV+ G+ ERA
Sbjct: 240 FALLKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVLGGSLERA 299
Query: 278 PTL 280
PTL
Sbjct: 300 PTL 302
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 176/220 (80%), Positives = 192/220 (87%), Gaps = 12/220 (5%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
N+ELAKWYG RRI+LPEG+LDRS++PEYLTGEVPGDYG+DPFGLSKKP DF KYQAYEL
Sbjct: 52 NDELAKWYGESRRIYLPEGILDRSDVPEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYEL 111
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAMLGAAGF+IPEAFNKFGA CGPEAVWFKTGALLLDG TLNYFG NIPINLV AV
Sbjct: 112 IHARWAMLGAAGFVIPEAFNKFGAQCGPEAVWFKTGALLLDGGTLNYFGANIPINLVLAV 171
Query: 189 IAEIVL-----------DLE-DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+AE++L +L D+LHPGGPFDPLGLAKDPD FALLKVKEIKNGRLAMFAM
Sbjct: 172 LAEVILVGGAEYYRSINNLGLDRLHPGGPFDPLGLAKDPDNFALLKVKEIKNGRLAMFAM 231
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAER 276
LGFF+QAY TGEGPVENL HLSDPF NNLL+VI+G E+
Sbjct: 232 LGFFIQAYATGEGPVENLTTHLSDPFGNNLLSVIAGGIEK 271
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 367 bits (941), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 178/232 (76%), Positives = 196/232 (84%), Gaps = 19/232 (8%)
Query: 67 PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 126
P NEELAKWYGPDRRI+LPEGLL + EIP YLTGEVPGDYGYDPFGLSKKP+DF +YQAY
Sbjct: 40 PSNEELAKWYGPDRRIYLPEGLLAKDEIPAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAY 99
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF 186
ELIHARWAMLGAAGF++PEAFNKFGA CGPEAVW+KTGALLL+G+++ YFG +PINL
Sbjct: 100 ELIHARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAA 159
Query: 187 AVIAEIVL------------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 228
AVIAE++L DL D+LHPGG FDPLGLAKDPDQFALLKVKEIKN
Sbjct: 160 AVIAEVILVGGAEYYRSTNKDVYGLQDL-DRLHPGGAFDPLGLAKDPDQFALLKVKEIKN 218
Query: 229 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
GRLAMF+MLGFF+QAYVTGEGPVENLA HLSDPF NNLLTVI G AER P+L
Sbjct: 219 GRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVIQGTAERTPSL 270
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 181/217 (83%), Positives = 191/217 (88%), Gaps = 13/217 (5%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
GPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHARWAML
Sbjct: 6 GPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAML 65
Query: 137 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF---------- 186
GAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 66 GAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVG 125
Query: 187 -AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 243
A I+ LDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QA
Sbjct: 126 GAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQA 185
Query: 244 YVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
YVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 186 YVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 222
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 176/228 (77%), Positives = 196/228 (85%), Gaps = 18/228 (7%)
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
EELAKWYGPDRRI+LPEGLL + EIPEYLTGEVPGDYGYDPFGLSKKP+DF +YQAYELI
Sbjct: 1 EELAKWYGPDRRIYLPEGLLAKDEIPEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELI 60
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI 189
HARWAMLGAAGF++PEAFNKFGA CGPEAVW+KTGALLL+G+++ YFG +P+NL AVI
Sbjct: 61 HARWAMLGAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVI 120
Query: 190 AEIVL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
AE++L DL D+LHPGG FDPLGLAKDPDQFALLKVKEIKNGRLA
Sbjct: 121 AEVILVGGAEYYRSTNKSPLGSDL-DRLHPGGAFDPLGLAKDPDQFALLKVKEIKNGRLA 179
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
MF+MLGFF+QAYVTGEGPVENL+ HLSDPF NNLLTVI G AERAP+L
Sbjct: 180 MFSMLGFFVQAYVTGEGPVENLSAHLSDPFGNNLLTVIQGTAERAPSL 227
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 332 bits (852), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 166/201 (82%), Positives = 175/201 (87%), Gaps = 13/201 (6%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E+PEYL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIHARWAMLGAAGFIIPEA NKFGA
Sbjct: 1 EVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGA 60
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF-----------AVIAEIV--LDLEDK 199
NCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ A I+ LDLEDK
Sbjct: 61 NCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIINGLDLEDK 120
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
LHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGPVENL+KHLS
Sbjct: 121 LHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENLSKHLS 180
Query: 260 DPFANNLLTVISGNAERAPTL 280
DPF NNLLTVISG AER P+L
Sbjct: 181 DPFGNNLLTVISGAAERTPSL 201
>gi|226358407|gb|ACO51066.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 240
Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 181/228 (79%), Positives = 186/228 (81%), Gaps = 14/228 (6%)
Query: 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK 74
G EMLGNPLN S R+SAP SN S FK VALFSKKKAAPP +EELAK
Sbjct: 14 GVSEMLGNPLNFSGGARSSAPTPSNSSIFKTVALFSKKKAAPPKPKAAAVAP-ADEELAK 72
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDRRIFLPEGLLDRSEIPEYL GEVPGDYGYDPFGLSKKP+DF+KYQAYELIHARWA
Sbjct: 73 WYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWA 132
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF-------- 186
MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV
Sbjct: 133 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVVL 192
Query: 187 ---AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
A I+ LDLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNG
Sbjct: 193 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNG 240
>gi|169743370|gb|ACA66263.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 261
Score = 326 bits (836), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 167/236 (70%), Positives = 184/236 (77%), Gaps = 21/236 (8%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+++P A S + WYGPDR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 GRARPTAASG-----SPWYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 85
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLG AGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG
Sbjct: 86 ETFAKNRELEVIHCRWAMLGVAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFG 145
Query: 178 KNIPINLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVK 224
+IPINL+ AVIAE+V LDLEDKLHPGGPFDPLGLA DPDQ ALLKVK
Sbjct: 146 NSIPINLILAVIAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVK 205
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
EIKNGRLAMF+MLGFF+QAYVTGEGPVENLAKHLSDPF NNLLTVIS AER P+L
Sbjct: 206 EIKNGRLAMFSMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISAGAERTPSL 261
>gi|62733870|gb|AAX95979.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|77549543|gb|ABA92340.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 225
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/270 (59%), Positives = 184/270 (68%), Gaps = 47/270 (17%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
ARW +L A +++ +++G
Sbjct: 121 ARWVVLVGG------------------AEYYR----IING-------------------- 138
Query: 191 EIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
LDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+QAYVTGEGP
Sbjct: 139 ---LDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFIQAYVTGEGP 195
Query: 251 VENLAKHLSDPFANNLLTVISGNAERAPTL 280
VENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 196 VENLSKHLSDPFGNNLLTVISGAAERTPSL 225
>gi|15487738|gb|AAL00912.1|AF398734_1 ASCAB9-C [Argyroxiphium sandwicense]
gi|15487744|gb|AAL00915.1|AF398737_1 ASCAB9-C [Dubautia laxa]
Length = 171
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/171 (81%), Positives = 146/171 (85%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVTEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487716|gb|AAL00901.1|AF398723_1 ASCAB9-A [Argyroxiphium caliginis]
gi|15487720|gb|AAL00903.1|AF398725_1 ASCAB9-A [Dubautia laevigata]
gi|15487726|gb|AAL00906.1|AF398728_1 ASCAB9-A [Dubautia plantaginea]
gi|15487730|gb|AAL00908.1|AF398730_1 ASCAB9-A [Dubautia sherffiana]
gi|15487732|gb|AAL00909.1|AF398731_1 ASCAB9-A [Wilkesia gymnoxiphium]
gi|15487734|gb|AAL00910.1|AF398732_1 ASCAB9-B [Argyroxiphium caliginis]
gi|15487736|gb|AAL00911.1|AF398733_1 ASCAB9-B [Argyroxiphium sandwicense]
gi|15487740|gb|AAL00913.1|AF398735_1 ASCAB9-B [Dubautia laevigata]
gi|15487742|gb|AAL00914.1|AF398736_1 ASCAB9-C [Dubautia latifolia]
gi|15487746|gb|AAL00916.1|AF398738_1 ASCAB9-B [Dubautia plantaginea]
gi|15487748|gb|AAL00917.1|AF398739_1 ASCAB9-C [Dubautia scabra]
gi|15487750|gb|AAL00918.1|AF398740_1 ASCAB9-B [Wilkesia gymnoxiphium]
gi|15487758|gb|AAL00922.1|AF398744_1 ASCAB9 [Harmonia nutans]
gi|15487760|gb|AAL00923.1|AF398745_1 ASCAB9 [Osmadenia tenella]
gi|15487764|gb|AAL00925.1|AF398747_1 ASCAB9 [Anisocarpus scabridus]
gi|156046244|gb|ABU42590.1| ASCAB9 [Dubautia arborea]
gi|156046246|gb|ABU42591.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/171 (81%), Positives = 146/171 (85%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487754|gb|AAL00920.1|AF398742_1 ASCAB9 [Centromadia pungens]
Length = 171
Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/171 (83%), Positives = 150/171 (87%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV AV+AE+V LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046250|gb|ABU42593.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/171 (80%), Positives = 145/171 (84%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+EL HARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046248|gb|ABU42592.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/171 (80%), Positives = 146/171 (85%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYVTG+GPVE+LA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVESLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487724|gb|AAL00905.1|AF398727_1 ASCAB9-A [Dubautia laxa]
Length = 171
Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/171 (80%), Positives = 146/171 (85%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF++AYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487752|gb|AAL00919.1|AF398741_1 ASCAB9-C [Wilkesia gymnoxiphium]
Length = 171
Score = 270 bits (689), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 138/171 (80%), Positives = 145/171 (84%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVI GN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVIYGNIERVPTL 171
>gi|15487762|gb|AAL00924.1|AF398746_1 ASCAB9 [Carlquistia muirii]
Length = 171
Score = 270 bits (689), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 138/171 (80%), Positives = 145/171 (84%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYV G+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVAGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|156046252|gb|ABU42594.1| ASCAB9 [Dubautia arborea]
Length = 171
Score = 269 bits (688), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 137/171 (80%), Positives = 145/171 (84%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+EL HARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELTHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYVTG+GPVENLA H+SDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHMSDPFGNNLLTVISGNIERVPTL 171
>gi|15487728|gb|AAL00907.1|AF398729_1 ASCAB9-A [Dubautia raillardioides]
Length = 171
Score = 269 bits (688), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 138/171 (80%), Positives = 145/171 (84%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNI I
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIHI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487756|gb|AAL00921.1|AF398743_1 ASCAB9 [Deinandra lobbii]
Length = 171
Score = 269 bits (688), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 138/171 (80%), Positives = 145/171 (84%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYVTG+ PVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQCPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487722|gb|AAL00904.1|AF398726_1 ASCAB9-A [Dubautia latifolia]
Length = 171
Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 137/171 (80%), Positives = 144/171 (84%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKTGALLLDGNTLNYFGKNI I
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTGALLLDGNTLNYFGKNIHI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLH GGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHHGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF+QAYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIQAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|15487718|gb|AAL00902.1|AF398724_1 ASCAB9-A [Argyroxiphium sandwicense]
Length = 171
Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 137/171 (80%), Positives = 145/171 (84%), Gaps = 13/171 (7%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAG IIPEAFNK+GA+CGPEAVWFKT ALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGCIIPEAFNKYGASCGPEAVWFKTRALLLDGNTLNYFGKNIPI 60
Query: 183 NLVF-----------AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV A I+ LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG
Sbjct: 61 NLVVAVVAEVVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
RLAMF+M FF++AYVTG+GPVENLA HLSDPF NNLLTVISGN ER PTL
Sbjct: 121 RLAMFSMFAFFIKAYVTGQGPVENLASHLSDPFGNNLLTVISGNIERVPTL 171
>gi|224034685|gb|ACN36418.1| unknown [Zea mays]
Length = 186
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 130/183 (71%), Positives = 150/183 (81%), Gaps = 6/183 (3%)
Query: 12 ASIGAKEMLGNPLNVSSAVR--TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-V 68
A++ ++LG LN + + R T+AP A K V+LFSKK A P S + SP +
Sbjct: 2 AALAPSKILGTKLNFAGSSRYATAAPTAG---AQKIVSLFSKKPAQKPKPSAVSSSSPDI 58
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
++ELAKWYGPDRRI+LP+GLLDRSE+PEYLTGEVPGDYGYDPFGL KKP+DF+KYQAYEL
Sbjct: 59 SDELAKWYGPDRRIYLPDGLLDRSEVPEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYEL 118
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAMLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AV
Sbjct: 119 IHARWAMLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAV 178
Query: 189 IAE 191
IAE
Sbjct: 179 IAE 181
>gi|154357560|gb|ABS78804.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 127/149 (85%), Positives = 132/149 (88%), Gaps = 13/149 (8%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV AVIAE+V LD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVIAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
RLAMFAMLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|108864185|gb|ABG22425.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 186
Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 131/181 (72%), Positives = 146/181 (80%), Gaps = 2/181 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA 190
ARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+ AV A
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAA 180
Query: 191 E 191
E
Sbjct: 181 E 181
>gi|223949713|gb|ACN28940.1| unknown [Zea mays]
Length = 159
Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 127/159 (79%), Positives = 135/159 (84%), Gaps = 13/159 (8%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGAAG +IPEA NKFGANCGPEAVWFKTGALLLDGNTL+YFG +IPINLV AVIAE+VL
Sbjct: 1 MLGAAGAVIPEACNKFGANCGPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVVL 60
Query: 195 -------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
DLEDKLHPGGPFDPLGLA DPDQ A+LKVKEIKNGRLAMF+M FF+
Sbjct: 61 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAAILKVKEIKNGRLAMFSMFAFFI 120
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
QAYVTGEGPVENLAKHLSDPF NNLLTVISG AER P+L
Sbjct: 121 QAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPSL 159
>gi|168068370|ref|XP_001786045.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662226|gb|EDQ49142.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/175 (70%), Positives = 140/175 (80%), Gaps = 18/175 (10%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQAYELIHARWA+L AAGF+ P AFNKFG+ CGPEA+W+KTGALLL+G+++ YFG +PI
Sbjct: 34 YQAYELIHARWAILRAAGFVPPNAFNKFGSVCGPEAMWWKTGALLLEGDSIKYFGATVPI 93
Query: 183 NLVFAVIAEIVL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 225
NL AVI+E+ L DL D+LHPGG FDPLGLAKDPDQFALLKVKE
Sbjct: 94 NLAAAVISEVNLVGGSEYYRSTNKSPLGSDL-DRLHPGGAFDPLGLAKDPDQFALLKVKE 152
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
I NGRLAMF+MLGFF++AYVTGEGPVENLA HLSDPF NNLLTVI G AER P+L
Sbjct: 153 IMNGRLAMFSMLGFFVKAYVTGEGPVENLAAHLSDPFGNNLLTVIQGTAERTPSL 207
>gi|62733871|gb|AAX95980.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864187|gb|ABA92339.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 245
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 127/175 (72%), Positives = 142/175 (81%), Gaps = 2/175 (1%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP-VNE 70
A++ +MLG LN + + R A A K V+LFSKK A P + + SP + +
Sbjct: 2 AALAPSKMLGTRLNFAGSSRY-ATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGD 60
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
ELAKWYGPDRRIFLPEGLLDRSE+P+YL GEVPGDYGYDPFGLSKKP+DFSKYQAYELIH
Sbjct: 61 ELAKWYGPDRRIFLPEGLLDRSEVPDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIH 120
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185
ARWAMLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 121 ARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLI 175
>gi|215740823|dbj|BAG96979.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 159
Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 127/159 (79%), Positives = 134/159 (84%), Gaps = 13/159 (8%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVF-------- 186
MLGAAGFIIPEA NKFGANCGPEAVWFKTGALLLDGNTLNYFG +IPINL+
Sbjct: 1 MLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVL 60
Query: 187 ---AVIAEIV--LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
A I+ LDLEDKLHPGGPFDPLGLA DPDQ ALLKVKEIKNGRLAMF+MLGFF+
Sbjct: 61 VGGAEYYRIINGLDLEDKLHPGGPFDPLGLASDPDQAALLKVKEIKNGRLAMFSMLGFFI 120
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
QAYVTGEGPVENL+KHLSDPF NNLLTVISG AER P+L
Sbjct: 121 QAYVTGEGPVENLSKHLSDPFGNNLLTVISGAAERTPSL 159
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 141/289 (48%), Positives = 166/289 (57%), Gaps = 59/289 (20%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVN-------------------EELAKWYGPDRRIFLPEG 87
ALF K A+ PAK + V +L KWYGPDR++FLP G
Sbjct: 5 ALFKKTGASAPAKKGTASTKVVKPSKAGGKATRGWLGGQGGAADLDKWYGPDRKLFLPSG 64
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L DRSEIPEYL GE+ GDYGYDP GL K P+ +KY+ EL+HARWAML AAG +IPE
Sbjct: 65 LYDRSEIPEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGL 124
Query: 148 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA----------- 190
GAN WF+TGA +L+G TLNYF +P +V FAVIA
Sbjct: 125 QANGANI-KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIAVEVGLMGAVEF 181
Query: 191 -------------------EIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 231
V D D L+PGGPFDPLGLA DP+ LKVKEIKNGRL
Sbjct: 182 YRRNGTGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADDPEVLQELKVKEIKNGRL 241
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
AM ++LGF +Q+YVTGEGP N KH++DPF NLLTV+ G ER PTL
Sbjct: 242 AMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL-GAEERTPTL 289
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/286 (48%), Positives = 166/286 (58%), Gaps = 56/286 (19%)
Query: 47 ALFSKKKAAPPAK---SKPVAVSPVNE-------------ELAKWYGPDRRIFLPEGLLD 90
ALF K A+ PAK S V P + L KWYGPDR +FLP GL D
Sbjct: 5 ALFKKTAASAPAKKGTSSTKVVKPSGKATKGWLGGQGGAVNLDKWYGPDRVLFLPSGLYD 64
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
RSE+P YL GE+ GDYGYDP GL K + +KY+ YEL+HARWAML AAG +IPE
Sbjct: 65 RSEVPAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAGILIPEGLQAN 124
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA-------------- 190
GAN VWF+TGA +L+G TLNYF +P +V FAVIA
Sbjct: 125 GANI-KGGVWFETGAEMLNGGTLNYFA--VPWGIVSNPLPLFAVIAIEVGLMGAVEFYRR 181
Query: 191 ----------------EIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
V + D ++PGGPFDPLGLA DP+ F LKVKEIKNGRLAM
Sbjct: 182 NGTGPAGYSPGIGKFDSSVFEGLDSIYPGGPFDPLGLADDPEVFQELKVKEIKNGRLAMV 241
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
++L F +Q+YVTGEGP N KH+ DPF NLLTV+ GN +R PTL
Sbjct: 242 SVLAFAIQSYVTGEGPYTNWIKHVQDPFGYNLLTVL-GNEDRVPTL 286
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 131/246 (53%), Positives = 155/246 (63%), Gaps = 40/246 (16%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
+L KWYGPDR++FLP GL DRSEIP+YL GE+ GDYGYDP GL K P+ +KY+ EL+H
Sbjct: 18 DLDKWYGPDRKLFLPSGLYDRSEIPDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLH 77
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV----- 185
ARWAML AAG +IPE GAN WF+TGA +L+G TLNYF +P +V
Sbjct: 78 ARWAMLAAAGILIPEGLQANGANI-KGGTWFETGAEMLNGGTLNYFA--VPWGIVSNPLP 134
Query: 186 -FAVIA------------------------------EIVLDLEDKLHPGGPFDPLGLAKD 214
FAVIA V D D L+PGGPFDPLGLA D
Sbjct: 135 LFAVIAVEVGLMGAVEFYRRNGSGPAGYSPGIGKFDSSVFDGLDPLYPGGPFDPLGLADD 194
Query: 215 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
P+ LKVKEIKNGRLAM ++LGF +Q+YVTGEGP N KH++DPF NLLTV+ G
Sbjct: 195 PEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL-GAE 253
Query: 275 ERAPTL 280
ER PTL
Sbjct: 254 ERTPTL 259
>gi|154357502|gb|ABS78775.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357504|gb|ABS78776.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357506|gb|ABS78777.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357508|gb|ABS78778.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357510|gb|ABS78779.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357512|gb|ABS78780.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357514|gb|ABS78781.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357516|gb|ABS78782.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357518|gb|ABS78783.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357520|gb|ABS78784.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357522|gb|ABS78785.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357524|gb|ABS78786.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357526|gb|ABS78787.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357528|gb|ABS78788.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357530|gb|ABS78789.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357532|gb|ABS78790.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357534|gb|ABS78791.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357536|gb|ABS78792.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357538|gb|ABS78793.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357540|gb|ABS78794.1| At4g10340-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154357542|gb|ABS78795.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357544|gb|ABS78796.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357546|gb|ABS78797.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357548|gb|ABS78798.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357550|gb|ABS78799.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357552|gb|ABS78800.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357554|gb|ABS78801.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357556|gb|ABS78802.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357558|gb|ABS78803.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357562|gb|ABS78805.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357566|gb|ABS78807.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357568|gb|ABS78808.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357572|gb|ABS78810.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
gi|154357574|gb|ABS78811.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 236 bits (602), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 126/149 (84%), Positives = 132/149 (88%), Gaps = 13/149 (8%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV AV+AE+V LD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
RLAMFAMLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|154357500|gb|ABS78774.1| At4g10340-like protein [Arabidopsis halleri subsp. halleri]
Length = 149
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/151 (80%), Positives = 126/151 (83%), Gaps = 17/151 (11%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAGFIIPEA NK+GA CGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGAKCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NL---------------VFAVIAEIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
NL + + E LD EDKLHPGGPFDPLGLAKDPDQ ALLKVKEIK
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNE--LDFEDKLHPGGPFDPLGLAKDPDQGALLKVKEIK 118
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
NGRLAMFAMLGFF+QAYVTGEGPVENLAKHL
Sbjct: 119 NGRLAMFAMLGFFIQAYVTGEGPVENLAKHL 149
>gi|154357564|gb|ABS78806.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/149 (83%), Positives = 131/149 (87%), Gaps = 13/149 (8%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV AV+AE+V LD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
RLAMF MLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFGMLGFFIQAYVTGEGPVENLAKHL 149
>gi|154357570|gb|ABS78809.1| At4g10340-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/149 (83%), Positives = 131/149 (87%), Gaps = 13/149 (8%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
YQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPI
Sbjct: 1 YQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 60
Query: 183 NLVFAVIAEIV-------------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
NLV AV+AE+V LD EDKLHPGGPFDPLGLAKDP+Q ALLKVKEIKNG
Sbjct: 61 NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNG 120
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
RLAMF MLGFF+QAYVTGEGPVENLAKHL
Sbjct: 121 RLAMFXMLGFFIQAYVTGEGPVENLAKHL 149
>gi|224284808|gb|ACN40134.1| unknown [Picea sitchensis]
Length = 208
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/194 (65%), Positives = 145/194 (74%), Gaps = 10/194 (5%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVS----------SAVRTSAPGASNPSTFKPVALFS 50
MAS+AA + AA A +MLGNPLN++ S+ R ++P S F +
Sbjct: 1 MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAA 60
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K+K A +P +EELAKWYGPDRRIFLPEGLLDR++IPEYL GEVPGDYGYDP
Sbjct: 61 APPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
FGLSKKP++F KYQAYELIHARWAMLGAAGFIIPEAFNKFGA CGPEAVWFKTGALLLDG
Sbjct: 121 FGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDG 180
Query: 171 NTLNYFGKNIPINL 184
TL+YFG +IPIN
Sbjct: 181 GTLSYFGASIPINF 194
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/245 (51%), Positives = 152/245 (62%), Gaps = 36/245 (14%)
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELI 129
+ L KWYGP R +FLP GLLD S++P YL G + GDYGYDP GL K KY+AYELI
Sbjct: 88 QGLDKWYGPSRALFLPGGLLDPSDVPTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELI 147
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-----NIPINL 184
HARWAML AAG IIPE GA WF+TGA +L+G TLNYF N P+ L
Sbjct: 148 HARWAMLAAAGIIIPEGLQANGAAI-KGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPL 206
Query: 185 VFAVIAEIVL--DLE---------------------------DKLHPGGPFDPLGLAKDP 215
V+ E+ L +E D L+PGGPFDPLGLA DP
Sbjct: 207 FLVVVIEVALLGAVERYRQSGEGPPGYSPGVGKFDSSIFSGLDNLYPGGPFDPLGLADDP 266
Query: 216 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAE 275
+ FA LKVKEIKNGRLA+ ++LGF +Q+YVTGEGP N +KH++DPF NLLT+I G +
Sbjct: 267 ETFAELKVKEIKNGRLALISVLGFAVQSYVTGEGPYANWSKHVADPFGYNLLTII-GAED 325
Query: 276 RAPTL 280
R PTL
Sbjct: 326 RVPTL 330
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 124/244 (50%), Positives = 152/244 (62%), Gaps = 36/244 (14%)
Query: 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIH 130
+L KWYGP+R++FLP GLLDR ++PEYL GE+ GDYGYDP GL K + KY+A EL+H
Sbjct: 42 DLEKWYGPERKLFLPGGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLH 101
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-----KNIPINLV 185
ARWAML AAG +IPE GA+ WF+TGA +L+G TLNYF P+ L
Sbjct: 102 ARWAMLAAAGILIPEGLQANGADI-KGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLA 160
Query: 186 FAVIAEIVL-----------------------------DLEDKLHPGGPFDPLGLAKDPD 216
+ EIVL D D+L+PGGPFDPL LA DP+
Sbjct: 161 AVTLIEIVLLGAVEKFRVDGTGPAGFSPGVGKFDSDIFDGLDQLYPGGPFDPLNLADDPE 220
Query: 217 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAER 276
FA L+VKE KNGRLAM +L F +Q+YVTGEGP N KH+SDPF NLLTV+ G+ +R
Sbjct: 221 VFAELQVKETKNGRLAMVGVLAFAIQSYVTGEGPYANFTKHISDPFGYNLLTVLQGD-DR 279
Query: 277 APTL 280
PTL
Sbjct: 280 VPTL 283
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 230 bits (586), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 127/243 (52%), Positives = 151/243 (62%), Gaps = 36/243 (14%)
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
L KWYGPDR +FLP GL+ R EI L G +PGDYGYDP GL+K + SKYQA EL+HA
Sbjct: 45 LDKWYGPDRALFLPGGLMARDEINPLLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHA 104
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI-----PINLVF 186
RWAML AAG IIPE GA+ A WF+TGA +L+G TLN+F I P+ L
Sbjct: 105 RWAMLAAAGAIIPEGLAANGADV-KGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFV 163
Query: 187 AVIAEIVL-----------------------------DLEDKLHPGGPFDPLGLAKDPDQ 217
V A + L D D L+PGGPFDPLGLA DP+
Sbjct: 164 VVAANVALMGAAENYRRTGEGPAGYSPGVGKFDESAYDSMDSLYPGGPFDPLGLADDPEV 223
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERA 277
A LKVKEIKNGRLAM + LGF +QA VTGEGP N +KH++DPF NLLT+++G +RA
Sbjct: 224 LAELKVKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYNLLTILAGE-DRA 282
Query: 278 PTL 280
PTL
Sbjct: 283 PTL 285
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 114/232 (49%), Positives = 139/232 (59%), Gaps = 20/232 (8%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
+ + PA + A V +WYGPDR FL G + P YLTGE PGDYG+D
Sbjct: 10 RSSVRPATASSRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTA 67
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 68 GLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAEG 127
Query: 172 TLNYFG-------KNIPINLVFAVIAEIVLDLE-----------DKLHPGGPFDPLGLAK 213
LNY G ++I L F V+ + + D LHPGG FDPLGLA
Sbjct: 128 GLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLAD 187
Query: 214 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 188 DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 239
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 139/233 (59%), Gaps = 22/233 (9%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+ P S+ V P +WYGPDR FL G ++P YLTGE PGDYG+D
Sbjct: 10 RSSVRPTVASRAARVVP--RAAIEWYGPDRPKFL--GPFSEGDVPSYLTGEFPGDYGWDT 65
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 66 AGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAE 125
Query: 171 NTLNYFG-------KNIPINLVFAVIAEIVLDLE-----------DKLHPGGPFDPLGLA 212
LNY G ++I L F V+ + + D LHPGG FDPLGLA
Sbjct: 126 GGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLA 185
Query: 213 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 186 DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 238
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 209 bits (533), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 141/238 (59%), Gaps = 20/238 (8%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
VA + + + PA A V +WYGPDR FL G + P YLTGE PGD
Sbjct: 4 VAKSALRSSVRPATVASRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGD 61
Query: 106 YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 165
YG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA
Sbjct: 62 YGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGA 121
Query: 166 LLLDGNTLNYFG-------KNIPINLVFAVIAEIVLDLE-----------DKLHPGGPFD 207
+ LNY G ++I L F V+ + + D LHPGG FD
Sbjct: 122 QIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFD 181
Query: 208 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
PLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 182 PLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 239
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 142/236 (60%), Gaps = 25/236 (10%)
Query: 53 KAAPPAKSKPVAVSP-----VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
K+A + +PV V+ V +WYGPDR FL G + P YLTGE PGDYG
Sbjct: 6 KSAARSSVRPVTVASRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYG 63
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 167
+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 64 WDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQI 123
Query: 168 LDGNTLNYFG-------KNIPINLVFAVIAEIVLDLE-----------DKLHPGGPFDPL 209
LNY G ++I L F V+ + + D LHPGG FDPL
Sbjct: 124 FAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPL 183
Query: 210 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 184 GLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 239
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 119/249 (47%), Positives = 144/249 (57%), Gaps = 22/249 (8%)
Query: 35 PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI 94
P PS F+ +L S P KS ++ WYGPDR FL G +
Sbjct: 14 PNPFTPSDFRVYSLGSATHHQHPTKSSGSTAPQLSSW--PWYGPDRPKFL--GPFSEGDT 69
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+
Sbjct: 70 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 129
Query: 155 GPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVFAVIAEIVLDLE---------- 197
EAVWFK GA + LNY G ++I L F V+ + +
Sbjct: 130 FGEAVWFKAGAQIFAEGGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEG 189
Query: 198 -DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 256
D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+
Sbjct: 190 LDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSD 249
Query: 257 HLSDPFANN 265
HL++P A N
Sbjct: 250 HLANPSAVN 258
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 144/237 (60%), Gaps = 25/237 (10%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+ ++P +K K V + + +WYGPDR FL G P YL GE PGDYG+D
Sbjct: 16 RTVSSPKSKGKQVTRASI-----EWYGPDRPKFL--GPYSDGATPSYLKGEYPGDYGWDT 68
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GLS P+ FS+Y+ E+IH+RWA+LG G + PE K+G EAVWFK GA +
Sbjct: 69 AGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKAGAQIFSA 128
Query: 171 NTLNYFGKNIPIN---LVFAVIAEIVL---------------DLEDKLHPGGPFDPLGLA 212
+ LNY G ++ ++ V +++L ++ D L+PGG FDPLGLA
Sbjct: 129 DGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYRVNGGPAGEITDPLYPGGAFDPLGLA 188
Query: 213 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 269
DPD FA LKVKEIKNGRLA FA LGFF+QA VTG+GP++NL HL+DPFA N T+
Sbjct: 189 DDPDTFAELKVKEIKNGRLAQFAALGFFVQAIVTGKGPIQNLEDHLADPFAVNGFTI 245
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 139/233 (59%), Gaps = 28/233 (12%)
Query: 59 KSKPVAVSPVNEELAK--------WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
+S V +PV A+ WYGPDR FL G + P YLTGE PGDYG+D
Sbjct: 10 RSTSVRPTPVGSRAARVVPRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDT 67
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+ EAVWFK GA +
Sbjct: 68 AGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVSFGEAVWFKAGAQIFAE 127
Query: 171 NTLNYFG-------KNIPINLVFAVIAEIVLDLE-----------DKLHPGGPFDPLGLA 212
LNY G ++I L F V+ + + D LHPGG FDPLGLA
Sbjct: 128 GGLNYLGNENLVHAQSIIATLAFQVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLA 187
Query: 213 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL++P A N
Sbjct: 188 DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLANPSAVN 240
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 143/236 (60%), Gaps = 22/236 (9%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK GA +
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 170 GNTLNYFG-------KNIPINLVFAVI-------------AEIVLDLEDKLHPGGPFDPL 209
LNY G ++I L V+ +E LD D L+PGGPFDPL
Sbjct: 126 AGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPL 185
Query: 210 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GLA DPD FA LKVKEIKNGRLAMF+ LGFF+QA VTG+GPV+NL HL+DP NN
Sbjct: 186 GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNN 241
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 143/236 (60%), Gaps = 22/236 (9%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK GA +
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 170 GNTLNYFG-------KNIPINLVFAVI-------------AEIVLDLEDKLHPGGPFDPL 209
LNY G ++I L V+ +E LD D L+PGGPFDPL
Sbjct: 126 DGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPL 185
Query: 210 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GLA DPD FA LKVKEIKNGRLAMF+ LGFF+QA VTG+GPV+NL HL+DP NN
Sbjct: 186 GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNN 241
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 141/223 (63%), Gaps = 21/223 (9%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 130 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 187
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 188 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 246
Query: 184 LVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
+ A++A ++VL + D L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 247 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 306
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
NGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 307 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 349
Score = 206 bits (525), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 141/223 (63%), Gaps = 21/223 (9%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 370 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 427
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 428 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 486
Query: 184 LVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
+ A++A ++VL + D L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 487 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 546
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
NGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 547 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 589
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 60/73 (82%)
Query: 198 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMFAM GF++QA VTGEGPVEN A H
Sbjct: 37 DALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAH 96
Query: 258 LSDPFANNLLTVI 270
++DPF N LT +
Sbjct: 97 VADPFNVNGLTAV 109
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 142/223 (63%), Gaps = 21/223 (9%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G + P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 353 TPASDKLAAWYGPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 410
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 411 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 469
Query: 184 LVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
+ A++A ++VL + D L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 470 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 529
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
NGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 530 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 572
Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 142/223 (63%), Gaps = 21/223 (9%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G + P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 593 TPASDKLAAWYGPNRNKWL--GPFSENSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 650
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 651 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 709
Query: 184 LVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
+ A++A ++VL + D L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 710 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 769
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
NGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 770 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 812
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 112/223 (50%), Positives = 141/223 (63%), Gaps = 21/223 (9%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P +++LA WYGP+R +L G P YLTGE PGDYG+D GL+ P F+KY+
Sbjct: 113 TPASDKLAAWYGPNRNKWL--GPFSEGSTPSYLTGEFPGDYGWDTAGLAADPITFAKYRE 170
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
ELIHARWAMLGA G + PEA K G E VWFK GA + L+Y G + +
Sbjct: 171 AELIHARWAMLGALGVVFPEALAKAGVPLA-EPVWFKAGAQIFSEGGLDYLGNSNLVHAQ 229
Query: 184 LVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
+ A++A ++VL + D L+PGG FDPLGLA DP+ FA LKVKE+K
Sbjct: 230 SILAILAFQVVLMGLAEAYRVNGGPLGEDSDALYPGGAFDPLGLADDPETFAELKVKELK 289
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
NGRLAMFAM GF++QA VTGEGPVEN A H++DPF N LT +
Sbjct: 290 NGRLAMFAMFGFYVQALVTGEGPVENWAAHVADPFNVNGLTAV 332
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 60/73 (82%)
Query: 198 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMFAM GF++QA VTGEGPVEN A H
Sbjct: 20 DALYPGGAFDPLGLADDPETFAELKVKELKNGRLAMFAMFGFYVQALVTGEGPVENWAAH 79
Query: 258 LSDPFANNLLTVI 270
++DPF N LT +
Sbjct: 80 VADPFNVNGLTAV 92
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/258 (45%), Positives = 149/258 (57%), Gaps = 37/258 (14%)
Query: 29 AVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL 88
AV+TS G + ST P +K V+V E WYGPDR +L G
Sbjct: 1 AVQTSLVGTTTKSTL-------------PKGNKRVSVQAAVE----WYGPDRAKWL--GP 41
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
+P YLTGE PGDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE
Sbjct: 42 YSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILA 101
Query: 149 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL----------- 194
K+G E+VWF+ GA + L+Y G I+ + VI++++L
Sbjct: 102 KYGGTSFGESVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNG 161
Query: 195 ----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+ D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG+GP
Sbjct: 162 GPAGEGLDPLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGP 221
Query: 251 VENLAKHLSDPFANNLLT 268
VEN A+H++DPF N +
Sbjct: 222 VENWAEHVADPFTANAFS 239
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 142/236 (60%), Gaps = 22/236 (9%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S KA +++ ++ V ++YGPDR FL G ++ PEYLTGE PGDYG+D
Sbjct: 8 SGLKALNIRQTRQQRMATVPRAAVEFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWD 65
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P F++Y+ ELIHARWA+LGA G + PE +++ E VWFK GA +
Sbjct: 66 TAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFA 125
Query: 170 GNTLNYFG-------KNIPINLVFAVI-------------AEIVLDLEDKLHPGGPFDPL 209
LNY G ++I L V+ +E LD D L+PGGPFDPL
Sbjct: 126 DGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPL 185
Query: 210 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GLA DPD FA LKVKEIKNGRLAMF+ LGFF+QA VTG+GPV+NL HL+DP N
Sbjct: 186 GLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNK 241
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 204 bits (519), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 139/217 (64%), Gaps = 24/217 (11%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGPDR FL ++ P YL GE PGDYG+D GLS P+ F++Y+ E
Sbjct: 29 VTRAAIEFYGPDRATFLGP----FTDTPSYLNGEFPGDYGWDTAGLSADPETFARYREIE 84
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---L 184
+IHARWAMLGA G + PE K G + G EAVWFK GA + + LNY G + ++ +
Sbjct: 85 VIHARWAMLGALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDGLNYLGNSSLVHAQSI 143
Query: 185 VFAVIAEIVL--------------DLE--DKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 228
+ + +++L LE D L+PGGPFDPLGLA DPD F+ LKVKEIKN
Sbjct: 144 IATLACQVILMGGAEAYRAAGEGPGLEGLDSLYPGGPFDPLGLADDPDTFSELKVKEIKN 203
Query: 229 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 204 GRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPGVNN 240
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 203 bits (517), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 151/252 (59%), Gaps = 21/252 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
ALF KKK AK+ P + + AKWYGPDR +LP GLLD ++IP Y+ GE+ GDY
Sbjct: 32 ALFGKKKGT--AKATPKKAAAPADGAAKWYGPDRPKYLPTGLLDPADIPAYMNGELAGDY 89
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
GYDP GL K KY+ YE++H RWAMLG G ++PE G AVW+ +GA+
Sbjct: 90 GYDPLGLGNK-GGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAV 148
Query: 167 LLD-GNTLNYFGKNIPINLVFAVIAEIVLDLE----------------DKLHPGGP-FDP 208
LLD TL + G P+ L AVI E+ + D L+PGG FDP
Sbjct: 149 LLDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENYRYQQDGPWGTGLDPLYPGGKYFDP 208
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
LGLA DP + LKVKEIKNGRLAM A LGF +Q +VT EGP N +KHL+DPF N LT
Sbjct: 209 LGLASDPSKADELKVKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFLT 268
Query: 269 VISGNAERAPTL 280
++ +ER PTL
Sbjct: 269 ILGSGSERVPTL 280
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 145/243 (59%), Gaps = 24/243 (9%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
+ V + + K A +K V+V E WYGPDR +L G +P YLTGE P
Sbjct: 6 QSVLVGATAKTALVKGNKRVSVQAAVE----WYGPDRAKWL--GPYSDGAVPSYLTGEFP 59
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE K+G E+VWF+
Sbjct: 60 GDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRA 119
Query: 164 GALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL---------------DLEDKLHPGGP 205
GA + L+Y G I+ + VI++++L + D L+PG
Sbjct: 120 GAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDPLYPGES 179
Query: 206 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG+GPVEN A+H++DPF N
Sbjct: 180 FDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHIADPFTAN 239
Query: 266 LLT 268
+
Sbjct: 240 AFS 242
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 131/210 (62%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 31 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 88
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G I PE K G G EAVWFK GA + LNY G ++I L F
Sbjct: 89 AMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAF 147
Query: 187 AVIAEIVLDLE-----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + + D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 148 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 207
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 208 MFGFFVQAIVTGKGPIQNLDDHLANPTAVN 237
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 134/219 (61%), Gaps = 25/219 (11%)
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
L+ WYGP+R +L G +P YLTGE+PGDYG+D GL P +Y+ ELIH
Sbjct: 465 LSAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHG 522
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVI 189
RWAMLGA G +PE N+F E +WFK GA + LNYFG+ I+ + A++
Sbjct: 523 RWAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAIL 582
Query: 190 AEIVL--------------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
A VL DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNG
Sbjct: 583 ATQVLLMGAVEAYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNG 641
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
RLAM AMLGF+ QA VTGEGPVEN HL DP A+N LT
Sbjct: 642 RLAMMAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLT 680
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/197 (53%), Positives = 123/197 (62%), Gaps = 23/197 (11%)
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
+P YLTGE+PGDYG+D GL P +Y+ ELIH RWAMLGA G +PE N+F
Sbjct: 1 VPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGV 60
Query: 154 CGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIAEIVL----------------- 194
E +WFK GA + LNYFG+ I+ + A++A VL
Sbjct: 61 QFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYRAGNTAPGQ 120
Query: 195 ---DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNGRLAM AMLGF+ QA VTGEGPV
Sbjct: 121 FGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMVAMLGFYAQAIVTGEGPV 179
Query: 252 ENLAKHLSDPFANNLLT 268
EN HL DP A+N LT
Sbjct: 180 ENWLYHLQDPSAHNGLT 196
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 136/244 (55%), Gaps = 36/244 (14%)
Query: 45 PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPG 104
PVA+F+ + PA L++WYGPDR +L G + P YL GE+PG
Sbjct: 207 PVAMFAAGGSKAPAG------------LSQWYGPDRSKWL--GPYSDALTPPYLNGELPG 252
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GL P +Y+ ELIH RWAMLGA G + PE ++ E VWFK G
Sbjct: 253 DYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFDIPIAEPVWFKAG 312
Query: 165 ALLLDGNTLNYFG--KNIPINLVFAVIAEIVL-------------------DLEDKLHPG 203
A + L+Y G + + + ++ VL DL D L+PG
Sbjct: 313 AQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNGLGNFGKDL-DSLYPG 371
Query: 204 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 263
GPFDPLGLA DPD A LKVKEIKNGRLAMFAM GF++QA VTGE P+ENL+ HL+ PF
Sbjct: 372 GPFDPLGLANDPDTLAELKVKEIKNGRLAMFAMFGFYVQAIVTGESPLENLSAHLASPFT 431
Query: 264 NNLL 267
N L
Sbjct: 432 VNGL 435
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/252 (48%), Positives = 152/252 (60%), Gaps = 21/252 (8%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
ALF KKK AK+ P + + AKWYGPDR +LP GLLD ++IP Y+ GE+ GDY
Sbjct: 39 ALFGKKKGT--AKATPKKAAAPADGAAKWYGPDRPKYLPTGLLDPADIPAYMNGELAGDY 96
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
GYDP GL K KY+ YE++H RWAMLG G ++PE G AVW+ +GA+
Sbjct: 97 GYDPLGLGNK-GGVEKYRPYEVLHGRWAMLGVVGMLVPEGLYANGNTNIKGAVWWDSGAV 155
Query: 167 LLDGN-TLNYFGKNIPINLVFAVIAEIVLDLE----------------DKLHPGGP-FDP 208
LLD + TL + G P+ L AVI E+ + D L+PGG FDP
Sbjct: 156 LLDPSATLTWAGIPNPVPLALAVIFEVAVFFLIENYRYQQDGPWGTGLDPLYPGGKYFDP 215
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
LGLA DP + LKVKEIKNGRLAM A LGF +Q +VT EGP N +KHL+DPF N LT
Sbjct: 216 LGLASDPSKADELKVKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWSKHLADPFGYNFLT 275
Query: 269 VISGNAERAPTL 280
++ +ER PTL
Sbjct: 276 ILGSGSERVPTL 287
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 134/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++ + P YLTGE PGDYG+D GLS +P+ F+K + E+IHARWA
Sbjct: 52 WYGPDRVKYMGP---FSGQTPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWA 108
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIAEI 192
MLG G I+PE + G G EAVWFK G+ + LNY G K I + AV+A
Sbjct: 109 MLGTVGCIVPELLERNGVKIG-EAVWFKAGSQIFRDEGLNYLGDPKLIHAQNILAVLAAQ 167
Query: 193 VLDL----------------EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPL LA DP++FA+LKVKEIKNGRLAMFAM
Sbjct: 168 VILMGAIEGYRISGGPLGEPTDPLYPGGNFDPLHLADDPEEFAILKVKEIKNGRLAMFAM 227
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LGF++QA VTG+GP+ENL HL+DPF NN
Sbjct: 228 LGFYVQAIVTGKGPLENLYDHLADPFKNN 256
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/219 (51%), Positives = 134/219 (61%), Gaps = 25/219 (11%)
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
L+ WYGP+R +L G +P YLTGE+PGDYG+D GL P +Y+ ELIH
Sbjct: 238 LSAWYGPNRNKWL--GPYSDRSVPSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHG 295
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVI 189
RWAMLGA G +PE N+F E +WFK GA + LNYFG+ I+ + A++
Sbjct: 296 RWAMLGAVGCFLPEYLNRFFGVQFGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAIL 355
Query: 190 AEIVL--------------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
A VL DL D+L+PGGPFDPLGLA DPD FA LKVKEIKNG
Sbjct: 356 ATQVLLMGAVEAYRAGNTAPGQFGEDL-DRLYPGGPFDPLGLADDPDTFAELKVKEIKNG 414
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
RLAM AMLGF+ QA VTGEGPVEN HL DP A+N LT
Sbjct: 415 RLAMVAMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLT 453
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 121/212 (57%), Gaps = 24/212 (11%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L G + P YL GE+PGDYG+D GL P +Y+ ELIH RWAMLG
Sbjct: 1 PDRSKWL--GPYSDALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLG 58
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIAEIVL- 194
A G + PE ++ E VWFK GA + L+Y G + + + ++ VL
Sbjct: 59 ALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLL 118
Query: 195 ------------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
DL D L+PGGPFDPLGLA DPD A LKVKEIKNGRLAMFAM
Sbjct: 119 MGAAEAYRTGNGLGNFGKDL-DSLYPGGPFDPLGLANDPDTLAELKVKEIKNGRLAMFAM 177
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
GF++QA VTGE P+ENL+ HL+ PF N L
Sbjct: 178 FGFYVQAIVTGESPLENLSAHLASPFTVNGLN 209
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 131/210 (62%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 28 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 85
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G I PE K G G EAVWFK G+ + LNY G ++I L F
Sbjct: 86 AMLGALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAF 144
Query: 187 AVIAEIVLDLE-----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + + D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 145 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 204
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 205 MFGFFVQAIVTGKGPIQNLDDHLANPTAVN 234
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 122/266 (45%), Positives = 158/266 (59%), Gaps = 31/266 (11%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
M + + +SS T P NPS+ + A F+ +K+A +K VA S + WYG
Sbjct: 1 MAASSMALSSPTLTGKPVKLNPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLG
Sbjct: 53 PDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL- 194
A G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A V+
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 168
Query: 195 ---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M GF
Sbjct: 169 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGF 228
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANN 265
F+QA VTG+GP+ENLA HLSDP NN
Sbjct: 229 FVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 112/210 (53%), Positives = 131/210 (62%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 31 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 88
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G I PE K G G EAVWFK GA + LNY G ++I L F
Sbjct: 89 AMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFAEGGLNYLGNENLIHAQSIIATLAF 147
Query: 187 AVIAEIVLDLE-----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + + D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 148 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 207
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 208 MFGFFVQAIVTGKGPIQNLDDHLANPTAVN 237
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 201 bits (510), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/266 (45%), Positives = 157/266 (59%), Gaps = 31/266 (11%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
M + + +SS T P NPS+ + A F+ +K+A +K VA S + WYG
Sbjct: 1 MAASSMALSSPTLTGKPVKLNPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLG
Sbjct: 53 PDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL- 194
A G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A V+
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 168
Query: 195 ---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GF
Sbjct: 169 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 228
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANN 265
F+QA VTG+GP+ENLA HLSDP NN
Sbjct: 229 FVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 114/234 (48%), Positives = 141/234 (60%), Gaps = 23/234 (9%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 125 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 181
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 182 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 241
Query: 184 ---LVFAVIAEIVLDLE---------------DKLHPGGPFDPLGLAKDPDQFALLKVKE 225
L F I+ +E D L+PGGPFDPLGLA DPD A LKVKE
Sbjct: 242 SVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKE 301
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPT 279
+KNGRLAM AMLGF++Q VT GPVENL HL+DP ANN+ + SG A A T
Sbjct: 302 LKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFAMFAAT 355
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 142/237 (59%), Gaps = 23/237 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A S + +P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P
Sbjct: 578 AASGRKSAAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDP 634
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
++Y+ E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G
Sbjct: 635 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 694
Query: 178 KNIPIN-----LVFAVIAEIVLDLE---------------DKLHPGGPFDPLGLAKDPDQ 217
I+ L F I+ +E D L+PGGPFDPLGLA DPD
Sbjct: 695 NPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDSGRELDTLYPGGPFDPLGLANDPDA 754
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
A LKVKE+KNGRLAM AMLGF++Q VT GPVENL HL+DP ANN+ + SG A
Sbjct: 755 LAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFA 811
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/230 (46%), Positives = 137/230 (59%), Gaps = 29/230 (12%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
SP+N K YGPDR +L G +PEYLTGE+PGDYG+D GL P ++Y+
Sbjct: 832 SPLN----KLYGPDRVKWL-GGF--TGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRV 884
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
++IH RWAMLG G PE N++G E VWFK GA + + LNY G+ I+
Sbjct: 885 AQVIHGRWAMLGVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQ 944
Query: 184 -LVFAVIAEIVL------------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVK 224
+V ++ +VL DL D L+PGGPFDPLGLA DP+ F LKVK
Sbjct: 945 SVVLTFLSTLVLMGAVEAYRSAGSVGDFGADL-DPLYPGGPFDPLGLADDPEAFLELKVK 1003
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
E+KNGRLAM A+ GFF+Q +TG+GPVEN HL+DPF NN+ + G A
Sbjct: 1004 EVKNGRLAMVAIFGFFVQGILTGKGPVENWVDHLTDPFVNNIFQLTPGFA 1053
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 129/212 (60%), Gaps = 23/212 (10%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+KWYGP+R +L G L +PEYL GE GDYG+D GL+ P F +Y+ EL + R
Sbjct: 357 SKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGR 414
Query: 133 WAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-------- 183
WAMLG G + PE N FG PE VWFKTGA +L+G +++Y I+
Sbjct: 415 WAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTL 473
Query: 184 ---LVFAVIAEIVLDL--------EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
LVF AE + +DK +PGG FDPLGL+KDP FA KVKE+KNGRLA
Sbjct: 474 VLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGRLA 533
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 264
M AMLG F+QA VTG+ P+ENL+ HL++P N
Sbjct: 534 MLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 565
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 61/82 (74%)
Query: 198 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
D L+PGGPFDPLGLA DP+ F LKVKE+KNGRLAM A+ GF +Q +TG+GPVEN H
Sbjct: 37 DPLYPGGPFDPLGLADDPEAFLELKVKEVKNGRLAMVAIFGFSVQGILTGKGPVENWVDH 96
Query: 258 LSDPFANNLLTVISGNAERAPT 279
L+DPF NNL + SG A A +
Sbjct: 97 LTDPFENNLFQLTSGFAMLATS 118
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 133/213 (62%), Gaps = 23/213 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + PEYLTGE PGDYG+D GLS P F++Y+ ELIHARW
Sbjct: 27 EWYGPDRPKFL--GPFSEGDTPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARW 84
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G ++PE K G VWFK GA + + LNY G ++I L F
Sbjct: 85 AMLGALGCVVPELLAKNGTPLPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAF 144
Query: 187 AVI----AEIV----------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
V+ AE L+ D+L+PG FDP+GLA+DPD FA LKVKEIKNGRLA
Sbjct: 145 QVVVMGAAESFRFNGGAPGGFLEGNDRLYPGDQFDPMGLAEDPDTFAELKVKEIKNGRLA 204
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ NL HL+DP NN
Sbjct: 205 MFSMFGFFVQAIVTGQGPIANLDAHLADPSVNN 237
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 142/237 (59%), Gaps = 23/237 (9%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A S + +P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P
Sbjct: 374 AASGRKSAAPKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDP 430
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
++Y+ E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G
Sbjct: 431 TTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 490
Query: 178 KNIPIN-----LVFAVIAEIVLDLE---------------DKLHPGGPFDPLGLAKDPDQ 217
I+ L F I+ +E D L+PGGPFDPLGLA DPD
Sbjct: 491 NPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDA 550
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
A LKVKE+KNGRLAM AMLGF++Q VT GPVENL HL+DP ANN+ + SG A
Sbjct: 551 LAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSANNIFSFTSGFA 607
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 129/212 (60%), Gaps = 23/212 (10%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+KWYGP+R +L G L +PEYL GE GDYG+D GL+ P F +Y+ EL + R
Sbjct: 153 SKWYGPNRPKWL--GPLSGGAVPEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGR 210
Query: 133 WAMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-------- 183
WAMLG G + PE N FG PE VWFKTGA +L+G +++Y I+
Sbjct: 211 WAMLGVLGCLAPEVLSNVFGVPY-PEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTL 269
Query: 184 ---LVFAVIAEIVLDL--------EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
LVF AE + +DK +PGG FDPLGL+KDP FA KVKE+KNGRLA
Sbjct: 270 VLELVFFFAAETWREAGEGPLGKAQDKSYPGGVFDPLGLSKDPAAFAEAKVKEVKNGRLA 329
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 264
M AMLG F+QA VTG+ P+ENL+ HL++P N
Sbjct: 330 MLAMLGLFVQAGVTGQSPLENLSAHLANPGVN 361
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 85/149 (57%), Gaps = 20/149 (13%)
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-----LVFAVIAEIVLDLE-------- 197
G G AVW+K GA + + LNY G I+ L F I+ +E
Sbjct: 3 GVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGV 62
Query: 198 -------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AMLGF++Q VT GP
Sbjct: 63 GDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGP 122
Query: 251 VENLAKHLSDPFANNLLTVISGNAERAPT 279
VENL HL+DP ANN+ + SG A A T
Sbjct: 123 VENLTFHLADPSANNIFSFTSGFAMFAAT 151
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 21/166 (12%)
Query: 94 IPEYLTGEVPGDYG-----------YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
+ Y G GD+G +DP GL+ PD ++ + EL + R AM+ GF
Sbjct: 53 VEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFY 112
Query: 143 IPEAFNKFG---------ANCGPEAVW-FKTGALLLDGNTLNYFGKNIPINLVFAVIAEI 192
+ K G A+ ++ F +G + ++G N P L +
Sbjct: 113 VQPLVTKAGPVENLTFHLADPSANNIFSFTSGFAMFAATGSKWYGPNRPKWLGPLSGGAV 172
Query: 193 VLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 238
L+ + FD GLA DP F + E++NGR AM +LG
Sbjct: 173 PEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAMLGVLG 218
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +FL E P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 34 WYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 90
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G I PE +G G EAVWFK GA + L+Y G + + + A++
Sbjct: 91 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQ 149
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
VL + DKL+PGG FDPLGLA DPD F+ LKVKEIKNGRLAMF+M
Sbjct: 150 VLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFSELKVKEIKNGRLAMFSM 209
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 210 FGFFVQAIVTGKGPLQNLSDHLANPGTNN 238
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 200 bits (509), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 142/237 (59%), Gaps = 29/237 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KAA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKAATKKVSVSASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A V+ ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 205
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP +NN
Sbjct: 206 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNN 262
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 131/210 (62%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR FL G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 11 EWYGPDRPKFL--GPFSEGDTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 68
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G I PE K G G EAVWFK G+ + LNY G ++I L F
Sbjct: 69 AMLGALGCITPELLAKNGIPFG-EAVWFKAGSQIFAEGGLNYLGNENLVHAQSIIATLAF 127
Query: 187 AVIAEIVLDLE-----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + + D LHPGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 128 QVVVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 187
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP++NL HL++P A N
Sbjct: 188 MFGFFVQAIVTGKGPIQNLDDHLANPTAVN 217
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 140/226 (61%), Gaps = 25/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 44 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 97
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 98 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 156
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A V+ ++ D ++PGG FDPLGLA DPD FA
Sbjct: 157 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFA 216
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP +NN
Sbjct: 217 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNN 262
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +FL E P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 41 WYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 97
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G I PE +G G EAVWFK GA + L+Y G + + A++
Sbjct: 98 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQ 156
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
VL + DKL+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 157 VLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 216
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 217 FGFFVQAIVTGKGPLQNLSDHLANPGTNN 245
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 200 bits (508), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 139/229 (60%), Gaps = 23/229 (10%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 36 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 92
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 93 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 152
Query: 184 ---LVFAVIAEIVLDLE---------------DKLHPGGPFDPLGLAKDPDQFALLKVKE 225
L F I+ +E D L+PGGPFDPLGLA DPD A LKVKE
Sbjct: 153 SVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKE 212
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
+KNGRLAM AMLGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 213 LKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 261
Score = 100 bits (250), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 65/100 (65%), Gaps = 3/100 (3%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 271 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 327
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 165
E+IHARWAMLGA G + PE G G AVW+K GA
Sbjct: 328 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGA 367
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 136/223 (60%), Gaps = 24/223 (10%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
KP A S + WYGPDR +FL E P YLTGE PGDYG+D GLS P+ F
Sbjct: 29 KPAAKSSTPDSF--WYGPDRPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETF 83
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 179
+Y+ ELIHARWAMLGA G I PE +G G E+VWFK GA + L+Y G
Sbjct: 84 KRYRELELIHARWAMLGALGCIFPELLGSYGVPFG-ESVWFKAGAQIFQEGGLDYLGNPS 142
Query: 180 -IPINLVFAVIAEIVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLK 222
+ + A++ V+ + DKL+PGG FDPLGLA DPD FA LK
Sbjct: 143 LVHAQSILAILGTQVILMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELK 202
Query: 223 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
VKEIKNGRLAMF+M GFF+QA VTG+GP++NL+ HL++P NN
Sbjct: 203 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLQNLSDHLANPGVNN 245
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 115/232 (49%), Positives = 142/232 (61%), Gaps = 26/232 (11%)
Query: 53 KAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFG 112
++A P K + V ++YGPDR FL +E P YL GE PGDYG+D G
Sbjct: 11 RSAVPTKGQ--GNKQVTRAAIEFYGPDRAGFLGP----FTESPSYLKGEFPGDYGWDTAG 64
Query: 113 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT 172
LS P+ F++Y+ E+IHARWAMLGA G + PE K G + G EAVWFK GA + +
Sbjct: 65 LSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVSFG-EAVWFKAGAQIFGSDG 123
Query: 173 LNYFG-------KNIPINLVFAVI----AEIV--------LDLEDKLHPGGPFDPLGLAK 213
LNY G ++I L VI AE ++ D L+PGGPFDPLGLA
Sbjct: 124 LNYLGNPSLVHAQSIIATLACQVILMGGAEAYRANGEGPGVEGLDSLYPGGPFDPLGLAD 183
Query: 214 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
DPD FA LK KEIKNGRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 184 DPDTFAELKTKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPGVNN 235
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 199 bits (507), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 141/243 (58%), Gaps = 24/243 (9%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S+ P L S K KP + + + WYGP+R +FL G E P YLTG
Sbjct: 8 SSLAPRCLASTVKVEARRTVKPASKASTPDSF--WYGPERPLFL--GAF-TGEPPSYLTG 62
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G I PE K G G EAVW
Sbjct: 63 EFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFG-EAVW 121
Query: 161 FKTGALLLDGNTLNYFG-------KNIPINLVFAVIAEIVLDLE-----------DKLHP 202
FK GA + L+Y G +NI L VI +++ D L+P
Sbjct: 122 FKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNGGPAGEGLDPLYP 181
Query: 203 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
G FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL HLS+P
Sbjct: 182 GESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPT 241
Query: 263 ANN 265
NN
Sbjct: 242 VNN 244
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 139/229 (60%), Gaps = 23/229 (10%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 88 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 144
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 145 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 204
Query: 184 ---LVFAVIAEIVLDLE---------------DKLHPGGPFDPLGLAKDPDQFALLKVKE 225
L F I+ +E D L+PGGPFDPLGLA DPD A LKVKE
Sbjct: 205 SVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKE 264
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
+KNGRLAM AMLGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 265 LKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 313
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 136/229 (59%), Gaps = 28/229 (12%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P ++ L++WYGPDR +L G L E+P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 323 APKSDNLSQWYGPDRAKWL--GPL-TGEVPSYLTGELPGDYGWDTAGLGSDPTTLARYRE 379
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAML + PE G G AVW+K GA + + LNY G I+
Sbjct: 380 AEVIHARWAML-----VTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 434
Query: 184 ---LVFAVIAEIVLDLE---------------DKLHPGGPFDPLGLAKDPDQFALLKVKE 225
L F I+ +E D L+PGGPFDPLGLA DPD A LKVKE
Sbjct: 435 SVVLTFLSTLAIMGAVEAYRYGGGVGDFGRELDTLYPGGPFDPLGLANDPDALAELKVKE 494
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
+KNGRLAM AMLGF++Q VT GPVENL HL+DP +NN+ + SG A
Sbjct: 495 LKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNNIFSFTSGFA 543
Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 60/77 (77%)
Query: 198 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
D L+PGGPFDPLGLA DPD A LKVKE+KNGRLAM AMLGF++Q VT GPVENL H
Sbjct: 2 DTLYPGGPFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFH 61
Query: 258 LSDPFANNLLTVISGNA 274
L+DP +NN+ + SG A
Sbjct: 62 LADPSSNNIFSFTSGFA 78
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 132/213 (61%), Gaps = 20/213 (9%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P+ F+ Y+ E+IHARW
Sbjct: 127 EWYGPDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARW 184
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 185 AMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 244
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 245 QVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 304
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
MLGF++QA TG+GPVEN A+H++DP N LT
Sbjct: 305 MLGFYVQAIATGKGPVENWAEHIADPAGVNGLT 337
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/265 (46%), Positives = 157/265 (59%), Gaps = 30/265 (11%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA
Sbjct: 53 DRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL- 194
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 168
Query: 195 --------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 169 GAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 228
Query: 241 LQAYVTGEGPVENLAKHLSDPFANN 265
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 229 VQAIVTGKGPLENLADHLADPVNNN 253
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 123/265 (46%), Positives = 156/265 (58%), Gaps = 35/265 (13%)
Query: 20 LGNPLNVSSAVRTSAPGASNPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
L +P V TSA NPS+ + A F+ +K+A +K VA S + WYGP
Sbjct: 8 LSSPTLTGKPVETSA----NPSSQELGGARFTMRKSA---TTKKVASSG-----SPWYGP 55
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA
Sbjct: 56 DRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGA 112
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL-- 194
G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A V+
Sbjct: 113 LGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILM 171
Query: 195 --------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF
Sbjct: 172 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF 231
Query: 241 LQAYVTGEGPVENLAKHLSDPFANN 265
+QA VTG+GP+ENLA HLSDP NN
Sbjct: 232 VQAIVTGKGPLENLADHLSDPVNNN 256
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 139/229 (60%), Gaps = 25/229 (10%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTGE PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIARNAVEWYGPDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLS 64
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 174
P+ F Y+ ELIHARWAMLGA G + PE +K+ E+VWFK G+ + L+
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLD 124
Query: 175 YFGKN--IPINLVFAVI-AEIVL---------------DLEDKLHPGGPFDPLGLAKDPD 216
Y G + + A++ ++VL + D LHPG FDPLGLA DPD
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPD 184
Query: 217 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
FA LKVKEIKNGRLAMF+M GF++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 185 TFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/239 (49%), Positives = 136/239 (56%), Gaps = 26/239 (10%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ K+A + A V +WYGPDR FL G + P YLTGE GDYG+
Sbjct: 3 FALKQAVATKAAATRATRQVTRAAIEWYGPDRPKFL--GPFSEGDTPAYLTGEFAGDYGW 60
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P F+KY+ E+IHARWAMLGA G I PE K G G EAVWFK GA +
Sbjct: 61 DTAGLSADPQTFAKYREIEVIHARWAMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIF 119
Query: 169 DGNTLNYFGKN--IPINLVFAVIAEIVL--------------------DLEDKLHPGGPF 206
LNY G + + A +A VL DL D L+PGG F
Sbjct: 120 QDGGLNYLGNENLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDL-DSLYPGGAF 178
Query: 207 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
DPLGLA DPD A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 179 DPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPSGNN 237
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 137/218 (62%), Gaps = 22/218 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
+V V+ +WYGPDR +L G ++P YLTGE PGDYG+D GLS P+ F Y
Sbjct: 1 SVRNVSRNAIEWYGPDRPKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 58
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKN--I 180
+ ELIHARWAMLGA G + PE K+ G +CG E+VWFK G+ + L+Y G +
Sbjct: 59 REQELIHARWAMLGALGCVTPEILAKYAGVSCG-ESVWFKAGSQIFQEGGLDYLGNPSLV 117
Query: 181 PINLVFAVI-AEIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVK 224
+ A++ ++VL + D LHPG FDPLGLA DPD FA LKVK
Sbjct: 118 HAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVK 177
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
EIKNGRLAMF+M GF++QA VTG+GP+EN A H++DPF
Sbjct: 178 EIKNGRLAMFSMFGFYVQAIVTGKGPIENWADHVADPF 215
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 146/244 (59%), Gaps = 27/244 (11%)
Query: 43 FKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ S+K A A+ K V+ S ++ + WYG DR FL E P YL
Sbjct: 19 LKPVSELSRKVNAGEARVTMRKTVSKSSGSDSI--WYGADRPKFLGP---FSGETPSYLN 73
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAV
Sbjct: 74 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAV 132
Query: 160 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLH 201
WFK GA + L+Y G + + A+ A +++L D+ D ++
Sbjct: 133 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDVTDPIY 192
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP
Sbjct: 193 PGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 252
Query: 262 FANN 265
ANN
Sbjct: 253 VANN 256
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 114/250 (45%), Positives = 146/250 (58%), Gaps = 42/250 (16%)
Query: 54 AAPPAKSKPVAVSPVNEELAK--------------------WYGPDRRIFLPEGLLDRSE 93
++P KPV +SP ++EL WYGPDR +L E
Sbjct: 9 SSPTLAGKPVKLSPSSQELGASRFTMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGE 65
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 125
Query: 154 CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------D 195
G EAVWFK G+ + L+Y G + + A+ A ++VL +
Sbjct: 126 FG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGE 184
Query: 196 LEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
+ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 185 VTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
Query: 256 KHLSDPFANN 265
HLSDP NN
Sbjct: 245 DHLSDPVNNN 254
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/265 (45%), Positives = 156/265 (58%), Gaps = 29/265 (10%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA
Sbjct: 53 DRVLYL--GPLSGREPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 110
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL- 194
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL
Sbjct: 111 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 169
Query: 195 --------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ D L+PGG FDPLGLA DP+ A LKVK+IKNGRLAMF+M GFF
Sbjct: 170 GAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEACAELKVKKIKNGRLAMFSMFGFF 229
Query: 241 LQAYVTGEGPVENLAKHLSDPFANN 265
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 VQAIVTGKGPLENLADHLADPVNNN 254
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 132/213 (61%), Gaps = 20/213 (9%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P+ F+ Y+ E+IHARW
Sbjct: 114 EWYGPDRALWL--GPFSEGSVPSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARW 171
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIAE 191
AMLGA G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 172 AMLGALGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 231
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 232 QVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 291
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
MLGF++QA TG+GPVEN A+H++DP N LT
Sbjct: 292 MLGFYVQAIATGKGPVENWAEHIADPAGVNGLT 324
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/243 (47%), Positives = 147/243 (60%), Gaps = 22/243 (9%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
K V S+K A A+ + +A + + WYG DR ++L G S P YLTG
Sbjct: 16 QQLKSVNELSRKVGAGEARVQMMAPKKASTSGSIWYGADRPLYL--GPFSGSP-PSYLTG 72
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E PGDYG+D GLS P+ F+K + ELIHARWAMLGA G + PE K G G EAVW
Sbjct: 73 EFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKFG-EAVW 131
Query: 161 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHP 202
FK G+ + L+Y G + + A+ A ++VL ++ED L+P
Sbjct: 132 FKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVAGGPLGEVEDPLYP 191
Query: 203 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
GG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP
Sbjct: 192 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPT 251
Query: 263 ANN 265
NN
Sbjct: 252 VNN 254
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 141/242 (58%), Gaps = 22/242 (9%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF AL KA + P + +WYGP+R +L G + P YLTGE
Sbjct: 6 TFSRKALQVSAKATGKKGTSKTVAKPAPSGI-EWYGPNRAKWL--GPYSENATPAYLTGE 62
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K G G EAVWF
Sbjct: 63 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQFG-EAVWF 121
Query: 162 KTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL---------------DLEDKLHPG 203
K GA + L+Y G + N+V + +++L + D L+PG
Sbjct: 122 KAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPG 181
Query: 204 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 263
FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL++P
Sbjct: 182 ESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLNDHLANPAV 241
Query: 264 NN 265
NN
Sbjct: 242 NN 243
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 139/229 (60%), Gaps = 25/229 (10%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTG+ PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIVRNAVEWYGPDRAKWL--GPFSEGDVPSYLTGQFPGDYGWDTAGLS 64
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 174
P+ F Y+ ELIHARWAMLGA G + PE +K+ E+VWFK G+ + L+
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLD 124
Query: 175 YFGKN--IPINLVFAVI-AEIVL---------------DLEDKLHPGGPFDPLGLAKDPD 216
Y G + + A++ ++VL + D LHPG FDPLGLA DPD
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDVLHPGEKFDPLGLADDPD 184
Query: 217 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
FA LKVKEIKNGRLAMF+M GF++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 185 TFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 108 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 166
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 167 VILMGAVEGYRVAGGPLGEITDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 141/245 (57%), Gaps = 31/245 (12%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF + SKK +++ +P + WYGPDR FL + P YLTGE
Sbjct: 8 TFVGTQVASKKMVTSMRRTQKKGSAPD----SVWYGPDRPQFLGP---FSGDTPSYLTGE 60
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+G E+VWF
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGVSFGESVWF 120
Query: 162 KTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE---------------------DKL 200
K G+ + L+Y G NLV A +L + D L
Sbjct: 121 KAGSQIFQEGGLDYLGN---ANLVHAQSILAILGCQVVLMGAIEAYRVNGGPLGEGLDPL 177
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 260
+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GFF+QA VTG+GP+EN A+H++D
Sbjct: 178 YPGDKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFFVQAVVTGKGPIENWAEHVAD 237
Query: 261 PFANN 265
PF+ N
Sbjct: 238 PFSVN 242
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 122/265 (46%), Positives = 156/265 (58%), Gaps = 30/265 (11%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + +SS V A +++ + F + +K AA P KP A S + WYG
Sbjct: 1 MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKP---KPAASSG-----SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + ELIH+RWAMLGA
Sbjct: 53 DRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGA 109
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL- 194
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLM 168
Query: 195 --------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ D L+PGG FDPLGLA DP+ FA LKVKEIK GRLAMF+M GFF
Sbjct: 169 GAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKKGRLAMFSMFGFF 228
Query: 241 LQAYVTGEGPVENLAKHLSDPFANN 265
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 229 VQAIVTGKGPLENLADHLADPVNNN 253
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 136/217 (62%), Gaps = 23/217 (10%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGPDR +L + P YLTGE PGDYG+D GLS P+ F+ Y+ E
Sbjct: 27 VTRAAVEFYGPDRAKWLGP---FSDDTPSYLTGEFPGDYGWDTAGLSADPETFASYRELE 83
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 185
LIHARWAMLGA G + PE +K+ EAVWFK GA + L+Y G + + +
Sbjct: 84 LIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVHAQSI 143
Query: 186 FAVI-AEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 228
A++ ++VL DL DKLHPGG FDPLGLA DPD F+ LKVKEIKN
Sbjct: 144 LAILGCQVVLMGGAEAFRVNGGPLGEDL-DKLHPGGAFDPLGLADDPDTFSELKVKEIKN 202
Query: 229 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GRLAMF+M GFF+QA VTG+GPVEN A+H++DP +N
Sbjct: 203 GRLAMFSMFGFFVQAIVTGKGPVENWAEHIADPSGSN 239
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 197 bits (502), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQ 177
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 237
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPIENLADHLADPVNNN 266
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 59 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 115
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 116 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 174
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 175 VILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSM 234
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 235 FGFFVQAIVTGKGPIENLADHLADPVTNN 263
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 137/226 (60%), Gaps = 27/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP A S + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPAAASG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 149
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
I + A+ A V+ ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 150 NPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFA 209
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 58 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 114
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 115 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 173
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 174 VILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSM 233
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 234 FGFFVQAIVTGKGPIENLADHLADPVTNN 262
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 135/223 (60%), Gaps = 22/223 (9%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K VA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 40 KSVAKSKAVSSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 96
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 179
+K + E+IH RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 97 AKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPN 155
Query: 180 -IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLK 222
+ + A+ A V+ ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 156 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELK 215
Query: 223 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 216 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 258
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 137/229 (59%), Gaps = 25/229 (10%)
Query: 60 SKPVAVSPVN-----EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
+KPV + N +WYGPDR +L G ++P YLTGE PGDYG+D GLS
Sbjct: 7 AKPVGFASSNVRNIARNAVEWYGPDRAKWL--GPFFEGDVPSYLTGEFPGDYGWDTAGLS 64
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN 174
P+ F Y+ ELIHARWAMLGA G + PE +K+ E+VWFK G+ + L+
Sbjct: 65 ADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVSLGESVWFKAGSQIFQEGGLD 124
Query: 175 YFGKN--IPINLVFAVIAEIVLDLE----------------DKLHPGGPFDPLGLAKDPD 216
Y G + + A++ V+ + D LHPG FDPLGLA DPD
Sbjct: 125 YLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNGGPLGKGLDVLHPGEKFDPLGLADDPD 184
Query: 217 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
FA LKVKEIKNGRLAMF+M GF++QA VTG+GP+EN A+H++DPF+ N
Sbjct: 185 TFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIENWAEHVADPFSVN 233
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 132/216 (61%), Gaps = 20/216 (9%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARW
Sbjct: 127 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 184
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIAE 191
AMLG G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 185 AMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 244
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 245 QVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 304
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
MLGF++QA TG+GPVEN A+H++DP N LT+ +
Sbjct: 305 MLGFYVQAISTGKGPVENWAEHIADPSGVNGLTLAT 340
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 113/244 (46%), Positives = 143/244 (58%), Gaps = 25/244 (10%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
S KPV S+K + A+ + V ++ + WYG DR +L E P YLT
Sbjct: 16 SLLKPVNELSRKVGSSEARVTMRRTVKSTSDSI--WYGADRPKYLGP---FSGETPSYLT 70
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAV
Sbjct: 71 GEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAV 129
Query: 160 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLH 201
WFK GA + L+Y G + + A+ A V+ ++ D ++
Sbjct: 130 WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVAGGPLGEITDPIY 189
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP
Sbjct: 190 PGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADP 249
Query: 262 FANN 265
ANN
Sbjct: 250 VANN 253
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 132/211 (62%), Gaps = 26/211 (12%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YGPDR FL +++P YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWA
Sbjct: 45 FYGPDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWA 100
Query: 135 MLGAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 193
MLG G +PEA K+ G N G E+VWFK G + L+Y G N + ++IA +
Sbjct: 101 MLGTLGCFLPEALEKYSGINFG-ESVWFKAGGQIFQEGGLDYLG-NPSLVHAQSIIATVF 158
Query: 194 L-------------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
+ + DK++PGG FDPLGL DPD A LKVKEIKNGRLAMF
Sbjct: 159 IQALLMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMF 218
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
+M G+F+QA VTG+GPVENL HL+DPF NN
Sbjct: 219 SMFGYFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLADPVANN 254
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/211 (49%), Positives = 132/211 (62%), Gaps = 26/211 (12%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YGPDR FL +++P YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARWA
Sbjct: 45 FYGPDRVTFLGP----FTDVPSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWA 100
Query: 135 MLGAAGFIIPEAFNKF-GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 193
MLG G +PEA K+ G N G E+VWFK G + L+Y G N + ++IA +
Sbjct: 101 MLGTLGCFLPEALEKYSGINFG-ESVWFKAGGQIFQEGGLDYLG-NPSLVHAQSIIATVF 158
Query: 194 L-------------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
+ + DK++PGG FDPLGL DPD A LKVKEIKNGRLAMF
Sbjct: 159 IQALLMGLVEGYRVGGGPLGEAGDKMYPGGSFDPLGLGDDPDTLAELKVKEIKNGRLAMF 218
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
+M G+F+QA VTG+GPVENL HL+DPF NN
Sbjct: 219 SMFGYFIQAIVTGKGPVENLDAHLADPFVNN 249
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 141/237 (59%), Gaps = 29/237 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K++ S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKSSTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A V+ ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDP 205
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 206 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 151/265 (56%), Gaps = 31/265 (11%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P KP A + WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL- 194
G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 167
Query: 195 --------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 168 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 227
Query: 241 LQAYVTGEGPVENLAKHLSDPFANN 265
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 228 VQAIVTGKGPIENLADHLTDPVNNN 252
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 138/237 (58%), Gaps = 29/237 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A V+ ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 205
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 206 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLTDHLADPVNNN 262
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 141/237 (59%), Gaps = 29/237 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA + + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKLTASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P++F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A V+ ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 205
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 206 LGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/225 (49%), Positives = 139/225 (61%), Gaps = 28/225 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE F + G G EAVWFK G+ + L+Y G
Sbjct: 91 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 149
Query: 179 N--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFAL 220
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAE 209
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/258 (43%), Positives = 149/258 (57%), Gaps = 25/258 (9%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLP 85
+++ T + + + K + S+K A+ V + + + WYG DR +L
Sbjct: 1 MAACTATHSTALAGQTALKSINELSRKVGNVQAR---VTMRKASSSDSIWYGADRPKYL- 56
Query: 86 EGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 145
G L E P YLTGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE
Sbjct: 57 -GPLS-GETPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPE 114
Query: 146 AFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL--------- 194
K G G EAVWFK G+ + L+Y G + + A+ A V+
Sbjct: 115 LLAKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYR 173
Query: 195 -------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 174 VAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 233
Query: 248 EGPVENLAKHLSDPFANN 265
+GP+ENL+ HL+DP ANN
Sbjct: 234 KGPLENLSDHLADPVANN 251
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 140/226 (61%), Gaps = 26/226 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKPKPAASSG-----SPWYGADRVLYL--GPLSGREPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH+RWAMLG G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 87 ETFAKNRELEVIHSRWAMLGGLGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 145
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
I + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 146 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGAFDPLGLADDPEAFA 205
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 196 bits (499), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/212 (49%), Positives = 133/212 (62%), Gaps = 20/212 (9%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARW
Sbjct: 111 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 168
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA- 190
AMLGA G + PE +K+ E VWFK G+ + L+Y G I + A++A
Sbjct: 169 AMLGALGCVTPELLSKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLIHAQSILAILAC 228
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 229 QVVLMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 288
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 267
MLGF++QA TG+GPVEN A+H++DP N L
Sbjct: 289 MLGFYVQAIATGKGPVENWAEHIADPSGVNGL 320
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 132/216 (61%), Gaps = 20/216 (9%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR ++L G +P YLTGE PGDYG+D GLS P F+ Y+ E+IHARW
Sbjct: 126 EWYGPDRALWL--GPFSEGAVPSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARW 183
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIAE 191
AMLG G + PE K+ E VWFK G+ + L+Y G + + A++A
Sbjct: 184 AMLGTLGCVTPELLAKYSGVPIAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILAC 243
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 244 QVILMGGAEAYRVNGGPAGEGLDAINPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 303
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
MLGF++QA TG+GPVEN A+H++DP N LT+ +
Sbjct: 304 MLGFYVQAISTGKGPVENWAEHIADPSGVNGLTLAT 339
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 45 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 160
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 161 VLLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 220
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 221 FGFFVQAIVTGKGPIENLADHLADPVTNN 249
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 196 bits (499), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 149/257 (57%), Gaps = 24/257 (9%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+SA++ SA S + KP KK + + + + + WYGPDR +L
Sbjct: 3 TSAIQQSAFAGS--AALKPQNELVKKTGSFTGGRFTMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
+ P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE
Sbjct: 61 ---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEV 117
Query: 147 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVLDLE------- 197
+K G G EAVWFK G+ + L+Y G I + A+ A V+ +
Sbjct: 118 LSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRV 176
Query: 198 ---------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+
Sbjct: 177 GGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 249 GPVENLAKHLSDPFANN 265
GP+ENL HLSDP ANN
Sbjct: 237 GPIENLFDHLSDPVANN 253
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 139/233 (59%), Gaps = 29/233 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S P + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKATTKKVSVPASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A V+ ++ D ++PGG FDP
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLREVTDPIYPGGSFDP 202
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 203 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|115818|sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor
gi|218019|dbj|BAA00449.1| light harvesting a/b binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVMYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQ 177
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA +KVKEIKNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFADVKVKEIKNGRLAMFSM 237
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPIENLADHLADPVNNN 266
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 54 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 110
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 111 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQ 169
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
++L ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 170 VILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSM 229
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 230 FGFFVQAIVTGKGPIENLADHLADPVNNN 258
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 111/225 (49%), Positives = 139/225 (61%), Gaps = 28/225 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KP + S + WYGPDR +L E P YLTGE P DYG+D GLS P+
Sbjct: 41 KAKPASSS------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPSDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE F + G G EAVWFK GA + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFAL 220
+ + A+ A ++VL ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAE 210
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 196 bits (498), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 149/244 (61%), Gaps = 30/244 (12%)
Query: 40 PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLT 99
PS+ A + +K A AK KP A + WYGPDR ++L G L E P YLT
Sbjct: 17 PSSLFGEARVTMRKTA--AKPKPAASG------SPWYGPDRVLYL--GPLS-GEPPSYLT 65
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAV
Sbjct: 66 GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAV 124
Query: 160 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLH 201
WFK G+ + L+Y G I + A+ A ++VL ++ D L+
Sbjct: 125 WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLY 184
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 185 PGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP 244
Query: 262 FANN 265
NN
Sbjct: 245 VNNN 248
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCVTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
+++L + D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQ 163
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + DKL+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGLIEGYRVGGGPLGEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 224 FGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 137/224 (61%), Gaps = 28/224 (12%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 180 --IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALL 221
I + A+ A V+ ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 150 SLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 222 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/254 (44%), Positives = 146/254 (57%), Gaps = 38/254 (14%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAK----------------WYGPDRRIFLPEGLL 89
+A S ++P K V +SP +E+ + WYGPDR +L
Sbjct: 1 MAASSMALSSPSLAGKAVKLSPSTQEVGRVSMRKTVTKQASSGSPWYGPDRVKYLGP--- 57
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE +
Sbjct: 58 FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 117
Query: 150 FGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL------------- 194
G G EAVWFK G+L+ L+Y G I + A+ A V+
Sbjct: 118 NGVKFG-EAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGG 176
Query: 195 ---DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 177 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 236
Query: 252 ENLAKHLSDPFANN 265
ENLA HLSDP +N
Sbjct: 237 ENLADHLSDPVNSN 250
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
+++L + D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPIENLADHLADPVTNN 252
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 143/243 (58%), Gaps = 25/243 (10%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S KPV S+K A+ V++ + + WYG DR FL E P YL G
Sbjct: 16 SLLKPVNELSRKVGTSEAR---VSMRKSSGSDSIWYGADRPKFLGP---FSGETPSYLNG 69
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAVW
Sbjct: 70 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFG-EAVW 128
Query: 161 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHP 202
FK GA + L+Y G + + A+ A +++L ++ D ++P
Sbjct: 129 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPIYP 188
Query: 203 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
GG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP
Sbjct: 189 GGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 248
Query: 263 ANN 265
ANN
Sbjct: 249 ANN 251
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
+++L + D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/283 (44%), Positives = 158/283 (55%), Gaps = 49/283 (17%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
M + A S+PA M G P+ VS A + F + +K AA P
Sbjct: 1 MTATMALSSPA-------MAGTPVKVSRA-----------TPFGEGRITMRKTAAKPK-- 40
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
V+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 41 -------VSASGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETF 90
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 179
+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPS 149
Query: 180 -IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLK 222
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 150 LVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELK 209
Query: 223 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 210 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
+++L + D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPIENLNDHLANPAVNN 242
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 137/224 (61%), Gaps = 28/224 (12%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 180 --IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALL 221
+ + A+ A V+ ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 150 SLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 222 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/223 (49%), Positives = 135/223 (60%), Gaps = 22/223 (9%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ A P + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 37 RKTAGKPAASSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETF 93
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 179
+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 94 AKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPS 152
Query: 180 -IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLK 222
I + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 153 LIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELK 212
Query: 223 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 138/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 SKAKPVSSGSL------WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A V+ ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 208
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 141/226 (62%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ S + WYGP+R +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 SKAKPVSSS------SPWYGPNRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGSQIFSQGGLDYLG 149
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFA 209
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IHARWA
Sbjct: 48 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G I PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MLGALGCIFPELLSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQ 163
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VVLMGFIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 224 FGFFVQAIVTGKGPLENLSDHLADPVANN 252
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 140/226 (61%), Gaps = 29/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK K + SP WYGPDR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKPKATSGSP-------WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 89 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYLG 147
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
I + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 148 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 207
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKE+KNGRLAMF+M GFF+QA VTG GP+ENLA HL+DP NN
Sbjct: 208 ELKVKELKNGRLAMFSMFGFFVQAIVTGNGPIENLADHLADPVNNN 253
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 145/245 (59%), Gaps = 27/245 (11%)
Query: 42 TFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYL 98
KPV S+K A+ + V+ S ++ + WYG DR FL E P YL
Sbjct: 17 VLKPVNELSRKVGNVEARVTMRRTVSKSAGSDSI--WYGADRPKFLGP---FSGETPSYL 71
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158
TGE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EA
Sbjct: 72 TGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EA 130
Query: 159 VWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKL 200
VWFK GA + L+Y G + + A+ A ++VL ++ D +
Sbjct: 131 VWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDPI 190
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 260
+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+D
Sbjct: 191 YPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLAD 250
Query: 261 PFANN 265
P ANN
Sbjct: 251 PVANN 255
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/246 (47%), Positives = 149/246 (60%), Gaps = 31/246 (12%)
Query: 39 NPSTFK-PVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEY 97
NPS+ + A F+ +K+A +K VA S + WYGPDR +L E P Y
Sbjct: 24 NPSSQELGAARFTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGESPSY 72
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
LTGE PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE ++ G G E
Sbjct: 73 LTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-E 131
Query: 158 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDK 199
AVWFK G+ + L+Y G + + A+ A V+ ++ D
Sbjct: 132 AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP 191
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+
Sbjct: 192 LYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA 251
Query: 260 DPFANN 265
DP NN
Sbjct: 252 DPVNNN 257
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 140/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 SKAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 209
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
++L ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/266 (45%), Positives = 152/266 (57%), Gaps = 36/266 (13%)
Query: 24 LNVSSAVRTSAPGASNPSTFKP------VALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
+ SS TS A P P VA F+ +K A +K VA S + WYG
Sbjct: 1 MAASSMALTSPALAGKPVKLTPSSQELGVAKFTMRKGA---TTKKVASSG-----SPWYG 52
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLG
Sbjct: 53 PDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL- 194
A G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A V+
Sbjct: 110 ALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVIL 168
Query: 195 ---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GF
Sbjct: 169 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGF 228
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANN 265
F+QA VTG+GP+ENLA HL+DP NN
Sbjct: 229 FVQAIVTGKGPLENLADHLADPVNNN 254
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 144/250 (57%), Gaps = 42/250 (16%)
Query: 54 AAPPAKSKPVAVSPVNEELAK--------------------WYGPDRRIFLPEGLLDRSE 93
++P KPV ++P ++EL WYGPDR +L E
Sbjct: 9 SSPTLAGKPVKLTPSSQELGAARFTMRKSATTKKVASSGSPWYGPDRVKYLGP---FSGE 65
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 125
Query: 154 CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------D 195
G EAVWFK G+ + L+Y G + + A+ A V+ +
Sbjct: 126 FG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGE 184
Query: 196 LEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
+ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 185 VVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
Query: 256 KHLSDPFANN 265
HL+DP NN
Sbjct: 245 DHLADPVNNN 254
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 140/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
+K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 39 SKAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 208
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 142/226 (62%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + ELIH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 208
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/250 (44%), Positives = 144/250 (57%), Gaps = 42/250 (16%)
Query: 54 AAPPAKSKPVAVSPVNEELAK--------------------WYGPDRRIFLPEGLLDRSE 93
++P KPV ++P ++EL WYGPDR +L E
Sbjct: 9 SSPTLAGKPVKLTPSSQELGAARFTMRKAATTKKVASSGSPWYGPDRVKYLGP---FSGE 65
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE ++ G
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 125
Query: 154 CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------D 195
G EAVWFK G+ + L+Y G + + A+ A V+ +
Sbjct: 126 FG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGE 184
Query: 196 LEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
+ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 185 VVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
Query: 256 KHLSDPFANN 265
HL+DP NN
Sbjct: 245 DHLADPVNNN 254
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/220 (50%), Positives = 136/220 (61%), Gaps = 22/220 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V + + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 39 AAGKVADSGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 95
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ E+IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 96 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIH 154
Query: 182 INLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 225
+ A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 155 AQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKE 214
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 142/226 (62%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ S + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSS------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 208
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/213 (50%), Positives = 130/213 (61%), Gaps = 23/213 (10%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
+ WYGPDR +FL G L E P YLTGE PGDYG+D G S P F++Y+ E+IHAR
Sbjct: 40 SAWYGPDRPLFL--GSLS-GEPPSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHAR 96
Query: 133 WAMLGAAGFIIPEAFNKFGAN-CGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI 189
WA+LGA G + PE + G G A+WFK G+ + LNY G I + A +
Sbjct: 97 WALLGALGIVTPEILAQNGVPFSGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATL 156
Query: 190 AEIVLDLE-----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
A V+ + D L+PGGPFDPLGLA DPD FA LKVKEIKNGRLA
Sbjct: 157 AVQVIVMGAAEGFRANGEAPGVEGLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLA 216
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MFA GFF+QA VTG+GP++NL HL+DP NN
Sbjct: 217 MFACFGFFVQAIVTGKGPIQNLEDHLADPGVNN 249
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/224 (49%), Positives = 136/224 (60%), Gaps = 28/224 (12%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNP 149
Query: 180 --IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALL 221
I + A+ A V+ ++ D L+PGG FDPLGLA DP+ FA L
Sbjct: 150 SLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAEL 209
Query: 222 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 141/226 (62%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 60 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 110
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 111 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 169
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 170 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 229
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 230 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 275
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 133/217 (61%), Gaps = 22/217 (10%)
Query: 67 PVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAY 126
P + WYGPDR +L G L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 41 PAASSGSPWYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNREL 97
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINL 184
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 98 EVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQS 156
Query: 185 VFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 228
+ A+ A V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKN
Sbjct: 157 ILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKN 216
Query: 229 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 217 GRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 139/225 (61%), Gaps = 28/225 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFAL 220
+ + A+ A ++VL ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 210
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|398599|emb|CAA52750.1| chlorophyll a/b binding protein [Amaranthus hypochondriacus]
Length = 264
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 134/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQ 163
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 224 FGFFVQAIVTGKGPIENLSDHLADPVANN 252
>gi|224284929|gb|ACN40194.1| unknown [Picea sitchensis]
Length = 274
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 141/237 (59%), Gaps = 29/237 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K++ S + SP WYGPDR ++L E P +LTGE PGDY
Sbjct: 37 ARVTMRKSSTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSHLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A V+ ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDP 205
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 206 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 147/259 (56%), Gaps = 25/259 (9%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A + + S KPV S+K A+ S S ++ + WYG DR +L
Sbjct: 1 MAAATAMHSTALAGQSLLKPVNELSRKVGNVEARISMRKTASKSSDSI--WYGADRPKYL 58
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + P
Sbjct: 59 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTP 115
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL-------- 194
E K G G EAVWFK GA + L+Y G + + A+ A V+
Sbjct: 116 ELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGY 174
Query: 195 --------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 246
D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 175 RVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 247 GEGPVENLAKHLSDPFANN 265
G+GP+ENL HL+DP ANN
Sbjct: 235 GKGPLENLNDHLADPVANN 253
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 104 MLGALGCVFPELLSKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQ 162
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSM 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 223 FGFFVQAIVTGKGPLENLSDHLADPVANN 251
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/224 (49%), Positives = 137/224 (61%), Gaps = 28/224 (12%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+KPVA S + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 AKPVASS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPET 90
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNP 149
Query: 180 --IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALL 221
+ + A+ A V+ ++ D L+PGG FDPLGLA+DP+ FA L
Sbjct: 150 SLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAEL 209
Query: 222 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
KVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 139/225 (61%), Gaps = 28/225 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 90
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 149
Query: 179 N--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFAL 220
+ + A+ A ++VL ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAE 209
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNN 254
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 138/237 (58%), Gaps = 29/237 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 37 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 86
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 87 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 145
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A V+ ++ D ++PGG FDP
Sbjct: 146 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 205
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LGLA DPD FA LKVKEIKNGRL MF+M GFF+QA VTG+GP+E+LA HL+DP NN
Sbjct: 206 LGLADDPDAFAELKVKEIKNGRLTMFSMFGFFVQAIVTGKGPIEDLADHLADPVNNN 262
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 147/241 (60%), Gaps = 22/241 (9%)
Query: 43 FKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEV 102
KPV S+K A A+ + +A + WYG DR ++L G S P YL+GE
Sbjct: 17 LKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYL--GPFSGSP-PSYLSGEF 73
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE K G G EAVWFK
Sbjct: 74 PGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFK 132
Query: 163 TGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHPGG 204
G+ + L+Y G + + A+ A +++L ++ED ++PGG
Sbjct: 133 AGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGG 192
Query: 205 PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 264
FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP N
Sbjct: 193 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVN 252
Query: 265 N 265
N
Sbjct: 253 N 253
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 141/226 (62%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 36 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 86
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 87 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 145
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 146 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 205
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 206 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 140/243 (57%), Gaps = 22/243 (9%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S F+ L SK ++ S VS + + WYG DR +L E P YL G
Sbjct: 16 SLFRFNELSSKVGSSQARVSMRKTVSKSSGSDSIWYGADRPKWLGP---FSGETPSYLNG 72
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAVW
Sbjct: 73 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVW 131
Query: 161 FKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHP 202
FK GA + L+Y G + + A+ A V+ D+ D ++P
Sbjct: 132 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVAGGPLGDVTDPIYP 191
Query: 203 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
GG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP
Sbjct: 192 GGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 251
Query: 263 ANN 265
ANN
Sbjct: 252 ANN 254
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 158/282 (56%), Gaps = 49/282 (17%)
Query: 2 ASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSK 61
A+ A S+PA M G P+ VS A + F + +K AA P
Sbjct: 3 AATMALSSPA-------MAGTPVKVSRA-----------TPFGEGRITMRKTAAKPK--- 41
Query: 62 PVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 121
V+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 42 ------VSASGSPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFA 92
Query: 122 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 179
K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 93 KNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 151
Query: 180 IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKV 223
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA LKV
Sbjct: 152 VHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKV 211
Query: 224 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
KEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 253
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/265 (44%), Positives = 150/265 (56%), Gaps = 31/265 (11%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P S F + +K A P KP A + WYG
Sbjct: 1 MAAATMALTSRALVGKPATSTRDVFGEGRITMRKTAGKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL- 194
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLM 167
Query: 195 --------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 168 GAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 227
Query: 241 LQAYVTGEGPVENLAKHLSDPFANN 265
+QA VTG+GPVENLA HL+DP NN
Sbjct: 228 VQAIVTGKGPVENLADHLADPVNNN 252
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 148/261 (56%), Gaps = 27/261 (10%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK---WYGPDRRI 82
+++A + + S F+PV S+K S+ VN+ WYG DR
Sbjct: 1 MAAATAMHSTALAGQSLFQPVNELSRKVG--NVDSRVTMRRTVNKSAGSDSIWYGADRPK 58
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
FL E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G +
Sbjct: 59 FLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCL 115
Query: 143 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL----- 194
PE K G G EAVWFK GA + L+Y G + + A+ A ++VL
Sbjct: 116 TPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 174
Query: 195 ----------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 175 GYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAI 234
Query: 245 VTGEGPVENLAKHLSDPFANN 265
VTG+GP+ENL HL+DP ANN
Sbjct: 235 VTGKGPLENLNDHLADPVANN 255
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 136/222 (61%), Gaps = 25/222 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 153
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A V+ ++ D ++PGG FDPLGLA DPD FA
Sbjct: 154 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFA 213
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|167997791|ref|XP_001751602.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697583|gb|EDQ83919.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 149/259 (57%), Gaps = 23/259 (8%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A+ + G + S KPV S++ A+ + VS + WYG DR FL
Sbjct: 1 MAAAIAMHSTGLAGQSLLKPVNELSRRVGNVDARVTMRRTVSKSARSDSIWYGADRPKFL 60
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
E P YL GE GDYG+D GLS + F++ + E+IHARWAMLGA G + P
Sbjct: 61 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDLETFARNRELEVIHARWAMLGALGCLTP 117
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVL------- 194
E K G G EAVWFK GA + L+Y G + + A+ A ++VL
Sbjct: 118 ELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 176
Query: 195 --------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 246
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 177 RVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 247 GEGPVENLAKHLSDPFANN 265
G+GP+ENL HL+DP ANN
Sbjct: 237 GKGPLENLNDHLADPVANN 255
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLSDPVNNN 252
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 134/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LGFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 LGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 136/217 (62%), Gaps = 23/217 (10%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
+E L+++YGP+R ++L G L S P YLTGE PGDYG+D GLS P+ F +Y+ E
Sbjct: 46 TSERLSQFYGPERALWL--GPLSGSA-PSYLTGEFPGDYGWDSAGLSSDPETFKRYRELE 102
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 185
LIHARWAMLGA G + PE K G E VWFK GA + L+Y G + +
Sbjct: 103 LIHARWAMLGALGCVTPELLAKNGTPIA-EPVWFKAGAQIFQEGGLDYLGNPGLVHAQSI 161
Query: 186 FAVIAEIVLDLE----------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKN 228
A +A V+ + DKLHPGGP FDPL LA+DPD FA LKVKEIKN
Sbjct: 162 LATLACQVILMGAIEGFRVNGGPAGEGLDKLHPGGPWFDPLALAEDPDAFAELKVKEIKN 221
Query: 229 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GRLAMF+M GFF+QA VTG+GP+ENL HL++P NN
Sbjct: 222 GRLAMFSMFGFFVQAIVTGQGPIENLESHLANPGVNN 258
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 151/265 (56%), Gaps = 31/265 (11%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P KP A + WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL- 194
G + PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLM 167
Query: 195 --------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 168 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 227
Query: 241 LQAYVTGEGPVENLAKHLSDPFANN 265
+QA VTG+GP+ENLA H++DP NN
Sbjct: 228 VQAIVTGKGPLENLADHIADPVNNN 252
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 151/261 (57%), Gaps = 27/261 (10%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRI 82
+++A + + S KPV S+K A+ + V+ S ++ + WYG DR
Sbjct: 1 MAAATAMHSTALAGQSLVKPVNELSRKVGNVEARVTMRRTVSKSAGSDSI--WYGADRPK 58
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
FL E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G +
Sbjct: 59 FLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCL 115
Query: 143 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL----- 194
PE K G G EAVWFK GA + L+Y G + + A+ A ++VL
Sbjct: 116 TPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 174
Query: 195 ----------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 244
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 175 GYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAI 234
Query: 245 VTGEGPVENLAKHLSDPFANN 265
VTG+GP+ENL HL+DP ANN
Sbjct: 235 VTGKGPLENLNDHLADPVANN 255
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 17 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 73
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + I + A+ A
Sbjct: 74 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQ 132
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 133 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 192
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 193 FGFFVQAIVTGKGPIENLADHIADPVNNN 221
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 141/226 (62%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L + P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 208
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSQGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLVDHLADPVANN 253
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 146/240 (60%), Gaps = 31/240 (12%)
Query: 47 ALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
ALF + + AK+K VA S + WYG DR ++L G L E P YLTGE P
Sbjct: 25 ALFGEARVTMRKTTAKAKQVASS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFP 75
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 76 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKA 134
Query: 164 GALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGP 205
G+ + L+Y G + + A+ A ++VL ++ D L+PGG
Sbjct: 135 GSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGS 194
Query: 206 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 195 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 137/226 (60%), Gaps = 29/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK K V+ SP WYGPDR +L E P YL+GE PGDYG+D GLS P
Sbjct: 6 AKPKTVSSSP-------WYGPDRVKYLGP---FSGEAPSYLSGEFPGDYGWDTAGLSADP 55
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 56 ETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLG 114
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A V+ ++ED L+PGG FDPLGLA DP+ FA
Sbjct: 115 NPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVEDPLYPGGSFDPLGLADDPEAFA 174
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+ A VTG+GP+ENLA HL+DP NN
Sbjct: 175 ELKVKEIKNGRLAMFSMFGFFVXAIVTGKGPLENLADHLADPVNNN 220
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 56 WYGPDRVKYLGP---FSGESPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 112
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 113 MLGALGCVFPELLSKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQ 171
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 172 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSM 231
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL+ HL+DP ANN
Sbjct: 232 FGFFVQAIVTGKGPLENLSDHLADPVANN 260
>gi|1345698|sp|P27518.2|CB21_GOSHI RecName: Full=Chlorophyll a-b binding protein 151, chloroplastic;
AltName: Full=LHCII type II CAB-151; Short=LHCP; Flags:
Precursor
gi|452314|emb|CAA38025.1| chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 134/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 139/233 (59%), Gaps = 29/233 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A +++L ++ D ++PGG FDP
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 202
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 203 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAIEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/247 (47%), Positives = 145/247 (58%), Gaps = 32/247 (12%)
Query: 39 NPSTFKPVA--LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
NPST + S +K+A KP VS + WYGPDR +L E P
Sbjct: 21 NPSTSDMIGEGRISMRKSA----GKPKNVS----SGSPWYGPDRVKYLGP---FSGEAPS 69
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
YLTGE PGDYG+D GLS P+ FSK + E+IH RWAMLGA G + PE + G G
Sbjct: 70 YLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG- 128
Query: 157 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLED 198
EAVWFK G+ + L+Y G + + A+ A V+ ++ D
Sbjct: 129 EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVD 188
Query: 199 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL
Sbjct: 189 PLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 248
Query: 259 SDPFANN 265
+DP NN
Sbjct: 249 ADPVNNN 255
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/209 (52%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 136/210 (64%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + ELIH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-NI----PINLVFAV 188
AMLGA G + PE +K G G EAVWFK GA + L+Y G N+ I ++AV
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 189 IAEIVLDLE-------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++ +E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVTDPVANN 251
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQ 177
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMFSM 237
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 139/238 (58%), Gaps = 22/238 (9%)
Query: 47 ALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGD 105
AL K +AA A +K +P +WYGPDR +L + P YLTGE PGD
Sbjct: 10 ALTVKVEAAKKAAGTKQTKAAPAKSAGIEWYGPDRAKWLGP---FSTNTPAYLTGEFPGD 66
Query: 106 YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 165
YG+D GLS P+ F KY+ E+IHARWA+LGA G + PE + + E VWFK GA
Sbjct: 67 YGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGA 126
Query: 166 LLLDGNTLNYFGKNIPI---NLVFAVIAEIVL---------------DLEDKLHPGGPFD 207
+ L+Y G I N+V + ++VL + D L+PG FD
Sbjct: 127 QIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFD 186
Query: 208 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
PLGLA DPD FA LKVKEIKNGRLAMF+ GFF+QA VTG+GP++NLA HL+DP NN
Sbjct: 187 PLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNN 244
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 150/260 (57%), Gaps = 31/260 (11%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ ++S P A F + +K AA P KP A + WYG DR ++
Sbjct: 1 MAITSRALVGKPAAGTRDVFGEGRITMRKTAAKP---KPAASG------SPWYGADRVLY 51
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G +
Sbjct: 52 L--GPLSGSP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVF 108
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL------ 194
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL
Sbjct: 109 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 167
Query: 195 ---------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 245
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 168 YRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 227
Query: 246 TGEGPVENLAKHLSDPFANN 265
TG+GP+ENLA H++DP NN
Sbjct: 228 TGKGPLENLADHIADPVNNN 247
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLSP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLSDPVNNN 254
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 135/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 103/212 (48%), Positives = 129/212 (60%), Gaps = 27/212 (12%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 37 WYGPDRPQFLGP---FSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWA 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G + PE +K+G E+VWFK G+ + L+Y G NLV A +L
Sbjct: 94 MLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGN---ANLVHAQSILAIL 150
Query: 195 DLE---------------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 233
+ D L+PG FDPLGLA DPD FA LK+KEIKNGRLAM
Sbjct: 151 GCQVVLMGAIEAYRVNGGPLGEGLDPLYPGDKFDPLGLADDPDTFAELKIKEIKNGRLAM 210
Query: 234 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
F+M GF++QA VTG+GP+EN A+H+++PF+ N
Sbjct: 211 FSMFGFYVQAVVTGKGPIENWAEHVANPFSVN 242
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQ 166
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VLLMGAVEGYRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 130/210 (61%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 39 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 96
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G I PE K G G EAVWFK GA + L+Y G +NI L
Sbjct: 97 AMLGALGCITPELLAKSGTQFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 155
Query: 187 AVIAEIVLDLE-----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
VI +++ D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 156 QVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 215
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP++NL HLS+P NN
Sbjct: 216 MFGFFVQAIVTGKGPIQNLDDHLSNPTVNN 245
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 194 bits (492), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 123/270 (45%), Positives = 155/270 (57%), Gaps = 34/270 (12%)
Query: 14 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELA 73
+ A L +P V AV+ AP AS F + +K A P KPV+ +
Sbjct: 1 MAASMALSSPSLVGKAVKL-APAASE--VFGEGRVSMRKTAGKP---KPVSSG------S 48
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR +L E P YLTGE GDYG+D GLS P+ F+K + E+IHARW
Sbjct: 49 PWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 106 AMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAT 164
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 165 QVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFS 224
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 MFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEQPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 139/234 (59%), Gaps = 30/234 (12%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S +K A P K P SP WYGPDR +L E P YLTGE PGDYG+D
Sbjct: 21 SMRKTAAPKKVAPSG-SP-------WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWD 69
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 70 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFS 128
Query: 170 GNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGL 211
L+Y G + + A+ A V+ ++ D L+PGG FDPLGL
Sbjct: 129 EGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGL 188
Query: 212 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
A DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA L+DP ANN
Sbjct: 189 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADRLADPVANN 242
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQ 177
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKELKNGRLAMFSM 237
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 135/222 (60%), Gaps = 25/222 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 153
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A V+ + D ++PGG FDPLGLA DPD FA
Sbjct: 154 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGXVTDPIYPGGSFDPLGLADDPDAFA 213
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A++A
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQ 177
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 146/259 (56%), Gaps = 23/259 (8%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFL 84
+++A + + S KPV S+K A+ S + S + WYG DR +L
Sbjct: 1 MAAATAMHSTALAGQSLLKPVNELSRKVGNVEARVSMRKSASKSAASDSIWYGADRPKYL 60
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + P
Sbjct: 61 GP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTP 117
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL-------- 194
E K G G EAVWFK GA + L+Y G + + A+ A V+
Sbjct: 118 ELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGY 176
Query: 195 --------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 246
D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 177 RVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 236
Query: 247 GEGPVENLAKHLSDPFANN 265
G+GP+ENL HL+DP ANN
Sbjct: 237 GKGPLENLNDHLADPVANN 255
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 101/213 (47%), Positives = 131/213 (61%), Gaps = 20/213 (9%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V+ +WYGPDR ++L G +P YL GE PGDYG+D GLS P+ F Y+ E
Sbjct: 1 VSRNAVEWYGPDRALWL--GPYSDGAVPSYLKGEFPGDYGWDTAGLSADPETFKAYREQE 58
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLV 185
LIHARWAMLGA G + PE +K+ E+VWFK G+ + L+Y G + +
Sbjct: 59 LIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSI 118
Query: 186 FAVI-AEIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
A++ ++VL + D LHPG FDPLGLA DPD FA LK+KEIKNG
Sbjct: 119 LAILGCQVVLMGLIEAYRVNGGPLGEGLDTLHPGESFDPLGLADDPDTFAELKIKEIKNG 178
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
RLAMF+M GF++QA VTG+GP+EN A H++DPF
Sbjct: 179 RLAMFSMFGFYVQAIVTGKGPIENWADHVADPF 211
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGADRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G I PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 105 MLGALGCIFPELLSKNGVQFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQ 163
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA H++DP ANN
Sbjct: 224 FGFFVQAIVTGKGPIENLADHIADPVANN 252
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 132/214 (61%), Gaps = 22/214 (10%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
S V+ + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 43 SVVSASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 99
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 100 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQ 158
Query: 184 LVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
+ A+ A V+ ++ D ++PGG FDPLGLA DPD FA LKVKEIK
Sbjct: 159 SILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIK 218
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 219 NGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 252
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQ 164
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VILMGAVEGYRIAGGPPGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPIENLADHLADPVNNN 253
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 128/205 (62%), Gaps = 22/205 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 171 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 230
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDP 261
GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 231 FGFFVQAIVTGKGPIENLADHLADP 255
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 132/214 (61%), Gaps = 22/214 (10%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
S V+ + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K +
Sbjct: 46 SVVSASPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRE 102
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPIN 183
E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G I
Sbjct: 103 LEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQ 161
Query: 184 LVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
+ A+ A V+ ++ D ++PGG FDPLGLA DPD FA LKVKEIK
Sbjct: 162 SILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIK 221
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
NGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 194 bits (492), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 137/225 (60%), Gaps = 28/225 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFAL 220
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAE 210
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLVDHLADPVNNN 255
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 164
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLTDPVNNN 253
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 135/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 165
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F++ + E+IH RWA
Sbjct: 48 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLG A DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGFADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 128/205 (62%), Gaps = 22/205 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 171 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 230
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDP 261
GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 231 FGFFVQAIVTGKGPIENLADHLADP 255
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 152/260 (58%), Gaps = 31/260 (11%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
L+ SS R + + F + +K AA K+K V+ + WYG DR ++
Sbjct: 8 LSSSSFARKMVENIPSSALFGEARVTMRKTAA---KAKQVSSG------SPWYGADRVLY 58
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAMLGA G +
Sbjct: 59 L--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVL------ 194
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL
Sbjct: 116 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQVVLMGAVEG 174
Query: 195 ---------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 245
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA V
Sbjct: 175 YRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIV 234
Query: 246 TGEGPVENLAKHLSDPFANN 265
TG+GP+ENLA H++DP NN
Sbjct: 235 TGKGPLENLADHIADPINNN 254
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/260 (45%), Positives = 152/260 (58%), Gaps = 31/260 (11%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
L+ SS R + + F + +K AA K+K V+ + WYG DR ++
Sbjct: 8 LSSSSFARKMVENIPSSALFGEARVTMRKTAA---KAKQVSSG------SPWYGADRVLY 58
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWAMLGA G +
Sbjct: 59 L--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVF 115
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL------ 194
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL
Sbjct: 116 PELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG 174
Query: 195 ---------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 245
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA V
Sbjct: 175 YRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSMFGFFVQAIV 234
Query: 246 TGEGPVENLAKHLSDPFANN 265
TG+GP+ENLA H++DP NN
Sbjct: 235 TGKGPLENLADHIADPINNN 254
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 132/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 48 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRW 103
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 104 AMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 162
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 163 QVVLMGFVEGYRVGGGPLGEGLDAIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFS 222
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 223 MFGFFVQAIVTGKGPIENLYDHLADPVANN 252
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 193 bits (491), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGWGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 135/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 86 WYGPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 142
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 143 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 201
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 202 VVLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 261
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 262 FGFFVQAIVTGKGPLENLADHLADPVNNN 290
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHIADPVNNN 254
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 113/226 (50%), Positives = 140/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKPKPAASG------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 84
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 85 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 143
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
I + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 144 NPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 203
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 204 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 249
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 138/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP + + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 AKAKPASSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 149
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 150 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 209
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 121/268 (45%), Positives = 152/268 (56%), Gaps = 36/268 (13%)
Query: 16 AKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKW 75
A L +P AV+ S P AS + V++ +K AA P S SP W
Sbjct: 4 ATMALSSPSFAGQAVKLS-PSASEITGNGRVSM--RKTAAKPVSSS----SP-------W 49
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YGPDR +L E P YLT E PGDYG+D GLS P+ F+K + E+IH RWAM
Sbjct: 50 YGPDRVKYLGP---FSGESPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAM 106
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIV 193
LGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A V
Sbjct: 107 LGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQV 165
Query: 194 L----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 237
+ ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 ILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMF 225
Query: 238 GFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 GFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 193 bits (491), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 136/234 (58%), Gaps = 21/234 (8%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S K K A S ++YGP+R +L G + P YLTGE PGDYG+D
Sbjct: 15 SAKATGKKGTGKTAAKSAPASSGIEFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWD 72
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P+ F +Y+ ELIHARWAMLGA G + PE K G G EAVWFK GA +
Sbjct: 73 TAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTQFG-EAVWFKAGAQIFS 131
Query: 170 GNTLNYFGKNIPI---NLVFAVIAEIVL---------------DLEDKLHPGGPFDPLGL 211
L+Y G + N+V + +++L + D L+PG FDPLGL
Sbjct: 132 EGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNGGPAGEGLDPLYPGESFDPLGL 191
Query: 212 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
A DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GPV+NL HLS+P NN
Sbjct: 192 ADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVQNLDDHLSNPTVNN 245
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 117/265 (44%), Positives = 150/265 (56%), Gaps = 30/265 (11%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M G + ++S P ++ + +K A AK KP A + WYG
Sbjct: 1 MAGATMALTSRALVGKPATTSTRDVFGEGRITMRKTA--AKPKPAASG------SPWYGA 52
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 53 DRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 109
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL- 194
G + PE + G G EAVWFK G+ + L+Y G I + A+ A ++VL
Sbjct: 110 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLM 168
Query: 195 --------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF
Sbjct: 169 GAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFF 228
Query: 241 LQAYVTGEGPVENLAKHLSDPFANN 265
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 229 VQAIVTGKGPLENLADHLADPVNNN 253
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 134/223 (60%), Gaps = 22/223 (9%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K V + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 2 KSATTKKVASSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETF 58
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 179
SK + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 59 SKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPS 117
Query: 180 -IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLK 222
+ + A+ A V+ ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 118 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELK 177
Query: 223 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
VKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 178 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 220
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 164
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G E+VWFK GA + L+Y G I + A+ A
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 164
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 113/246 (45%), Positives = 145/246 (58%), Gaps = 27/246 (10%)
Query: 41 STFKPVALFSKKKAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEY 97
S KPV S+K + A+ + V S ++ + WYG DR +L E P Y
Sbjct: 16 SLLKPVNELSRKVGSSQARVTMRRTVNKSAGSDSI--WYGADRPKYLGP---FSGETPSY 70
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
L GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G E
Sbjct: 71 LNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKFG-E 129
Query: 158 AVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDK 199
AVWFK GA + L+Y G + + A+ A +++L ++ D
Sbjct: 130 AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDP 189
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+
Sbjct: 190 IYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLA 249
Query: 260 DPFANN 265
DP ANN
Sbjct: 250 DPVANN 255
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ F+ LKVKEIKNGRLAMF+M
Sbjct: 164 VVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFSELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 128/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 142/226 (62%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KPV+ + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 6 AKAKPVSSG------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 56
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + ELIH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 57 ETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 115
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 116 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 175
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 176 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 221
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 134/223 (60%), Gaps = 22/223 (9%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K V + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F
Sbjct: 2 KSATTKKVASSGSPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETF 58
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN- 179
SK + E+IH+RWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 59 SKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPS 117
Query: 180 -IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLK 222
+ + A+ A V+ ++ D L+PGG FDPLGLA DP+ FA LK
Sbjct: 118 LVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELK 177
Query: 223 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
VKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 178 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 220
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 162
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 145/240 (60%), Gaps = 31/240 (12%)
Query: 47 ALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
ALF + + AK+K VA S + WYG DR ++L G L E P YLTGE P
Sbjct: 25 ALFGEARVTMRKTTAKAKQVASS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFP 75
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK
Sbjct: 76 GDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKA 134
Query: 164 GALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGP 205
G+ + L+Y G + + A+ A + VL ++ D L+PGG
Sbjct: 135 GSQIFSEGGLDYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIAGGPLGEIVDPLYPGGS 194
Query: 206 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 195 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 193 bits (490), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 136/210 (64%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-NI----PINLVFAV 188
AMLGA G + PE +K G G EAVWFK GA + L+Y G N+ I ++AV
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 189 IAEIVLDLE-------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++ +E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MLGALGSVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 134/210 (63%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLSKNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 163
Query: 192 IVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
+VL DL DKL+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 164 VVLMGFVEGYRVGGGPLGEDL-DKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFS 222
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GPVENL H++DP ANN
Sbjct: 223 MFGFFVQAIVTGKGPVENLVDHIADPVANN 252
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 142/243 (58%), Gaps = 25/243 (10%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S KPV S++ A A+ V + + WYG DR FL E P YL G
Sbjct: 16 SLLKPVNELSRRVGANEAR---VTMRKSAGSDSIWYGADRPKFLGP---FSGETPSYLNG 69
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E GDYG+D GLS P+ F++ + E+IHARWAMLGA G + PE K G G EAVW
Sbjct: 70 EFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVW 128
Query: 161 FKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHP 202
FK GA + L+Y G + + A+ A +++L ++ D ++P
Sbjct: 129 FKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVTDPIYP 188
Query: 203 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
GG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP
Sbjct: 189 GGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 248
Query: 263 ANN 265
ANN
Sbjct: 249 ANN 251
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + A++A +
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQ 177
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
++L ++ D ++PGG FDPLG A DPD FA LKVKE+KNGRLAMF+M
Sbjct: 178 VILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGWADDPDAFAELKVKELKNGRLAMFSM 237
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 238 FGFFVQAIVTGKGPLENLADHLADPVNNN 266
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 193 bits (490), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G E VWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EVVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ FSK + E+IH RWA
Sbjct: 50 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLGDHITDPVNNN 254
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 166
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 167 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/205 (51%), Positives = 129/205 (62%), Gaps = 22/205 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 112 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 171 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSM 230
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDP 261
GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 231 FGFFVQAIVTGKGPIENLADHLADP 255
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA+DP+ FA LKVK IKNGRLAMF+M
Sbjct: 167 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/210 (52%), Positives = 135/210 (64%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + ELIH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-NI----PINLVFAV 188
AMLGA G + PE +K G G EAVWFK GA + L+Y G N+ I ++AV
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 189 IAEIVLDLE-------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++ +E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA V G+GP+ENL H++DP ANN
Sbjct: 222 MFGFFVQAIVRGKGPIENLFDHVTDPVANN 251
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/280 (43%), Positives = 155/280 (55%), Gaps = 48/280 (17%)
Query: 4 LAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPV 63
+AAS+ SI + M G P+ V S F + +K AA P
Sbjct: 1 MAASTM---SISSTAMAGTPIKVGS--------------FGEGRITMRKTAAKPK----- 38
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
V + WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K
Sbjct: 39 ----VAASGSPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKN 91
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G I
Sbjct: 92 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIH 150
Query: 182 INLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 225
+ A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 151 AQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKE 210
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 250
>gi|386784577|gb|AFJ25031.1| chlorophyll a/b binding protein [Lonicera japonica]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGLIEGYRIGGGPLGEGLDSLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVENLYDHLADPVANN 253
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 106 MLGALGCVFPEILARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLYDHLADPVANN 253
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 135/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA +KVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAIEGYRVAGGPLGEVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 137/219 (62%), Gaps = 23/219 (10%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
NE+L+ +YGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F +Y+ EL
Sbjct: 46 NEKLSAFYGPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELEL 102
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 186
IHARWAMLGA G I PE K G E VWFK GA + L+Y G + +
Sbjct: 103 IHARWAMLGALGCITPELLAKNGTPI-VEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSIL 161
Query: 187 AVIAEIVLDLE----------------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNG 229
A +A V+ + DKLHPGG F DPLGLA+DPD FA LKVKEIKNG
Sbjct: 162 ATLAVQVILMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNG 221
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
RLAMF+M GFF+QA VTG+GP+ NL +HL+ PF +N T
Sbjct: 222 RLAMFSMFGFFVQAIVTGKGPLANLDEHLASPFTSNAFT 260
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGADRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQ 164
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + DK++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGLIEGYRVGGGPLGEGLDKIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVENLFDHLADPVANN 253
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 128/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPESFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLYDHLADPTANN 254
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 134/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 165
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEVKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 167 VVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 135/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLSGAP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 130/210 (61%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + LNY G I N+V +
Sbjct: 94 AMLGALGIVTPELLQKNGVQFG-EAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAV 152
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVVLLGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP++NL HLS+P NN
Sbjct: 213 SFGFFVQAIVTGKGPIQNLDDHLSNPGVNN 242
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 33 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 89
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 90 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 148
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 149 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 208
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 FGFFVQAIVTGKGPLENLADHLADPVNNN 237
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/225 (48%), Positives = 137/225 (60%), Gaps = 28/225 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFAL 220
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAE 210
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNN 255
>gi|56122690|gb|AAV74408.1| chloroplast chlorophyll A/B binding protein [Manihot esculenta]
Length = 243
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 27 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 83
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 84 MLGALGCVFPEVLSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 142
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 143 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 202
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 203 FGFFVQAIVTGKGPIENLFDHLADPVANN 231
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 127/208 (61%), Gaps = 23/208 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL G +P YLTGE PGDYG+D GLS P+ F +++ E+IHARWA
Sbjct: 36 WYGPDRPKFL--GPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWA 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVFA 187
MLGA G I PE K+ EAVWFK GA + LNY G ++I LV
Sbjct: 94 MLGALGCIFPEVLEKYSGVEFGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSIVATLVVQ 153
Query: 188 VIAEIVLDL--------------EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 233
V+ +++ +D L+PGG FDPLGLA DPD A LKVKE+KNGRLAM
Sbjct: 154 VLLMGAVEIYRANGEGPSGFGEGQDNLYPGGAFDPLGLADDPDTLAELKVKELKNGRLAM 213
Query: 234 FAMLGFFLQAYVTGEGPVENLAKHLSDP 261
+MLGFF+QA VTG+GP++NL HL +P
Sbjct: 214 MSMLGFFVQAIVTGKGPLDNLLTHLEEP 241
>gi|115789|sp|P04780.1|CB22_PETSP RecName: Full=Chlorophyll a-b binding protein 22L, chloroplastic;
AltName: Full=LHCII type I CAB-22L; Short=LHCP; Flags:
Precursor
gi|20475|emb|CAA26212.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 134/225 (59%), Gaps = 28/225 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE F + G G EAVW K G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIAEIVLDLE----------------DKLHPGGPFDPLGLAKDPDQFAL 220
+ + A+ A VL + D L+PGG FDPLGLA+DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAE 210
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKE KNGRLAMF+M GFF+QA VTG+GP+ENLA HL DP NN
Sbjct: 211 LKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNN 255
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/262 (44%), Positives = 150/262 (57%), Gaps = 28/262 (10%)
Query: 26 VSSAVRTSAPGASNPSTFKPVALFSKKK----AAPPAKSKPVAVSPVNEELAKWYGPDRR 81
+++A + + S KPV S+K A + V+ S ++ + WYG DR
Sbjct: 1 MAAATAMHSTALAGQSLVKPVNELSRKVLGNVEARVTMRRTVSKSAGSDTI--WYGADRP 58
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
FL E P YL GE GDYG+D GLS P+ F++ + E+IHARWAMLGA G
Sbjct: 59 KFLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGC 115
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---- 194
+ PE K G G EAVWFK GA + L+Y G + + A+ A ++VL
Sbjct: 116 LTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAV 174
Query: 195 -----------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 243
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 175 EGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQA 234
Query: 244 YVTGEGPVENLAKHLSDPFANN 265
VTG+GP+ENL HL+DP ANN
Sbjct: 235 IVTGKGPLENLNDHLADPVANN 256
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 137/233 (58%), Gaps = 29/233 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KAA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKAATKKVSVSASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A V+ ++ D ++PGG FDP
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 202
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
L LA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 203 LRLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADP 255
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|115774|sp|P04779.1|CB21_PETSP RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type I CAB-13; Short=LHCP; Flags:
Precursor
gi|20471|emb|CAA26210.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 137/225 (60%), Gaps = 28/225 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPA 90
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RW MLGA G + PE F + G G EAVWFK G+ + L+Y G
Sbjct: 91 TFAKNRKLEVIHCRWTMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFKEGGLDYLGN 149
Query: 179 N--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFAL 220
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 150 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAE 209
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
L+VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 LEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GPV+NL H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPVQNLYDHVADPVANN 253
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 129/210 (61%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|148514657|gb|ABQ81856.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 134/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE GDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVQFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR FL E P YL GE GDYG+D GLS P+ F++ + E+IHARWA
Sbjct: 51 WYGADRPKFLGP---FSGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 108 MLGALGCLTPELLAKSGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
++L D+ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 167 VILMGAVEGYRVAGGPLGDVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 227 FGFFVQAIVTGKGPLENLNDHLADPVANN 255
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 129/210 (61%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 138/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+KP + + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 6 AKAKPASSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 56
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 57 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 115
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 116 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 175
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 176 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 221
>gi|217072028|gb|ACJ84374.1| unknown [Medicago truncatula]
Length = 265
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 164 RVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GPV+NL H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPVQNLYDHVADPVANN 253
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 46 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 103 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 161
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 162 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 221
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 222 FGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 131/220 (59%), Gaps = 23/220 (10%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
V P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 39 VKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 95
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 182
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
Query: 183 NLVFAVIAEIVL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 225
+ A+ A V+ + ED L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 155 QSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 214
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 142/235 (60%), Gaps = 30/235 (12%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +KAA +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKAA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 169 DGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLG 210
L+Y G + + A+ A V+ ++ D L+PGG FDPLG
Sbjct: 113 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 172
Query: 211 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 173 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/226 (48%), Positives = 140/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 34 AKAKQVSSS------SPWYGSDRVLYL--GSLS-GEPPSYLTGEFPGDYGWDTAGLSADP 84
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWF G+ + L+Y G
Sbjct: 85 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFMAGSQIFSEGGLDYLG 143
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 144 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 203
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 204 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNN 249
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/210 (52%), Positives = 132/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 106 AMLGALGCLFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 165 QVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 224
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 134/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 44 WYGSDRVLYL--GPLS-GDPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 100
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 101 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 159
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 160 VVLMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSM 219
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 220 FGFFVQAIVTGKGPLENLADHLADPVNNN 248
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/225 (48%), Positives = 139/225 (61%), Gaps = 28/225 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L G + P YLTGE PGDYG+D GLS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYL--GPFSGNS-PSYLTGEFPGDYGWDTAGLSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFAL 220
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 210
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 129/210 (61%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 50 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGNEPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 225
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPIENLADHLADPVNNN 255
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 135/222 (60%), Gaps = 22/222 (9%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V ++YGPDR FL G +P YL GE PGDYG+D GLS P+ F++Y
Sbjct: 25 ARKQVTRASVEFYGPDRAKFL--GPFSEGAVPSYLKGEFPGDYGWDTAGLSADPETFARY 82
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
+ ELIH+RWA+LGA G + PE + GA + G AVWFK GA + + LNY G I
Sbjct: 83 REIELIHSRWALLGALGILTPEYLQRSGAVDFGEAAVWFKAGASIFGDDGLNYLGNPQLI 142
Query: 183 N---LVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKV 223
+ +V ++A+IVL DKL+PGG FDPLGL DP+ A LKV
Sbjct: 143 HAQSIVATLLAQIVLVGTAEAYRYAGEGPVDTSGDKLYPGGFFDPLGLGDDPEALAELKV 202
Query: 224 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
KEIKNGRLA ++ GFF+QA VTG+GP+ENL HL+DP+ NN
Sbjct: 203 KEIKNGRLAQVSVFGFFVQALVTGKGPLENLDDHLADPWNNN 244
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 138/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
K KPV+ S + WYGPDR +L E P YLTGE PGDYG+D GLS P
Sbjct: 2 GKPKPVSSS------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADP 52
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 53 ETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 111
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A V+ ++ D L+PGG FDPLGLA+DP+ FA
Sbjct: 112 NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFA 171
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 172 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/220 (48%), Positives = 131/220 (59%), Gaps = 23/220 (10%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
V P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ +
Sbjct: 39 VKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNR 95
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPI 182
E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 96 ELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHA 154
Query: 183 NLVFAVIAEIVL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 225
+ A+ A V+ + ED L+PGG FDPLGLA DP+ FA LKVKE
Sbjct: 155 QSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLAADPEAFAELKVKE 214
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
IKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|148909129|gb|ABR17665.1| unknown [Picea sitchensis]
Length = 266
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 128/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 165
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VGLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHLADPTANN 254
>gi|359806053|ref|NP_001241179.1| uncharacterized protein LOC100815789 [Glycine max]
gi|255638947|gb|ACU19775.1| unknown [Glycine max]
Length = 265
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/257 (43%), Positives = 149/257 (57%), Gaps = 24/257 (9%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+SA++ SA + + K + F +K + + + + WYGPDR +L
Sbjct: 3 TSAIQQSA--FTGQTALKQLNEFVRKTGGAGKGRTNMRRTVKSAPQSIWYGPDRPKYLGP 60
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
+IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAMLGA G PE
Sbjct: 61 ---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEI 117
Query: 147 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL--------- 194
K G G EAVWFK GA + L+Y G I + A+ A ++VL
Sbjct: 118 LEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRV 176
Query: 195 ------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M GFF+QA VTG+
Sbjct: 177 GGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 236
Query: 249 GPVENLAKHLSDPFANN 265
GP++NL H++DP ANN
Sbjct: 237 GPIQNLYDHVADPVANN 253
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + DK++PGG FDPLGLA DPD FA LKVKE+KN RLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNSRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 222 MFGFFVQAIVTGKGPIENLADHVADPVNNN 251
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQ 162
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIGGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|122831060|gb|ABM66819.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Bambusa oldhamii]
Length = 265
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 134/209 (64%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE GDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/225 (48%), Positives = 137/225 (60%), Gaps = 28/225 (12%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+KPV+ + WYGPDR +L E P YLTGE PGDYG+D LS P+
Sbjct: 41 KAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAELSADPE 91
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 TFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 150
Query: 179 N--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFAL 220
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 151 PSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAE 210
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|21419|emb|CAA78379.1| chlorophyll a/b-binding protein PS II-Type I [Solanum tuberosum]
Length = 267
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 143/235 (60%), Gaps = 30/235 (12%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K A AK+KPV+ + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 33 FTMRKTA--AKAKPVSSG------SPWYGPDRVKYLGP---FSGEAPSYLTGEKPGDYGW 81
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH RWA+L G + PE ++ G G EAVWFK G+ +
Sbjct: 82 DTAGLSADPETFAKNRELEVIHCRWAILERLGCVFPELLSRNGVKFG-EAVWFKVGSQIF 140
Query: 169 DGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLG 210
L+Y G + + A+ A ++VL ++ D L+PGG FDPLG
Sbjct: 141 SEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 200
Query: 211 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 201 LADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 191 bits (486), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 39 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 95
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 96 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 154
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 155 VVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 214
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 215 FGFFVQAIVTGKGPLENLADHLADPVNNN 243
>gi|388515841|gb|AFK45982.1| unknown [Lotus japonicus]
Length = 265
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 106 MLGALGCTFPEILERNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQ 164
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 129/210 (61%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 45 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 160
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 161 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 220
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 221 MFGFFVQAIVTGKGPIENLADHLADPVTNN 250
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 126/209 (60%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +L + P YLTGE GDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 40 WYGPERAKWLGP---FSTNTPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWA 96
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G I PE K G G EAVWFK GA + LNY G + I + A +A
Sbjct: 97 MLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQ 155
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 156 VILMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 215
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 216 FGFFVQAIVTGQGPIANLDAHLSDPSGNN 244
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 108/209 (51%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 30 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 86
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 87 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 145
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 146 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 205
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 206 FGFFVQAIVTGKGPIENLYDHLADPVANN 234
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 138/234 (58%), Gaps = 29/234 (12%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S + K +P SP WYGPDR +L E P YLTGE PGDYG+D
Sbjct: 43 SNRPRTTAGKLRPATSSP-------WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWD 92
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P+ F+K + E+IH+RWAMLGA G I PE + G G EAVWFK G+ +
Sbjct: 93 TAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGVKFG-EAVWFKAGSQIFS 151
Query: 170 GNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGL 211
L+Y G I + A+ A ++VL ++ D L+PG FDPLGL
Sbjct: 152 EGGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEITDPLYPGNSFDPLGL 211
Query: 212 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
A DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 212 ADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 265
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFREGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ + L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVNPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/227 (48%), Positives = 142/227 (62%), Gaps = 30/227 (13%)
Query: 58 AKSKPV-AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKK 116
AK+KPV + SP WYG DR ++L G L + P YLTGE PGDYG+D GLS
Sbjct: 39 AKAKPVPSGSP-------WYGADRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSAD 88
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 176
P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y
Sbjct: 89 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYL 147
Query: 177 GKN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQF 218
G + + A+ A ++VL ++ D L+PGG FDPLGLA DP+ F
Sbjct: 148 GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAF 207
Query: 219 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 208 AELKVKEVKNGRLAMFSMFGFFVQAIVTGKGPLENLADHITDPVNNN 254
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 7 WYGPERVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 63
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 64 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 122
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 123 VLLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 182
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 183 FGFFVQAIVTGKGPLENLADHLADPVNNN 211
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF++
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSI 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 135/211 (63%), Gaps = 22/211 (10%)
Query: 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHAR 132
++WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R
Sbjct: 47 SQWYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSR 103
Query: 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA 190
WAMLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 104 WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWA 162
Query: 191 -EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
+++L ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF
Sbjct: 163 VQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMF 222
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
+M GFF+QA VTG+GP++NLA H++DP NN
Sbjct: 223 SMFGFFVQAIVTGKGPLKNLADHIADPVNNN 253
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 139/234 (59%), Gaps = 30/234 (12%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S +K A AK KP A + WYGPDR +L E P YLTGE GDYG+D
Sbjct: 2 SMRKTA--AKPKPAASG------SPWYGPDRVKYLGP---FSGEAPSYLTGEFAGDYGWD 50
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
GLS P+ F+K + E+IHARWAMLGA G + PE + G G EAVWFK G+ +
Sbjct: 51 TAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFS 109
Query: 170 GNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGL 211
L+Y G + + A+ A V+ ++ D L+PGG FDPLGL
Sbjct: 110 EGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGL 169
Query: 212 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
A DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 170 ADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 223
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 104/205 (50%), Positives = 129/205 (62%), Gaps = 22/205 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK GA + L++ G I + A+ A
Sbjct: 112 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWACQ 170
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 171 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSM 230
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDP 261
GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 231 FGFFVQAIVTGKGPIENLADHLADP 255
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 140/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G I PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGSIFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFA 208
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA H+ DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIVDPVNNN 254
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 111/226 (49%), Positives = 137/226 (60%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK KP A + WYG DR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKPKPAASG------SPWYGADRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
I + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLIHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 208
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 129/210 (61%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 45 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 102 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 160
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 161 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 220
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 221 MFGFFVQAIVTGKGPIENLADHLADPVTNN 250
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 130/210 (61%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G + PE K G G EAVWFK GA + L+Y G +NI L
Sbjct: 94 AMLGALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 187 AVIAEIVLDLE-----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
VI +++ D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPVQNLDDHLANPTVNN 242
>gi|224131818|ref|XP_002321186.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|222861959|gb|EEE99501.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G E+VWFK G+ + L+Y G I + A+ A
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQ 164
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA +TG+GP+ENL HL+DP ANN
Sbjct: 225 FGFFVQAIITGKGPIENLLDHLADPVANN 253
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P F+K + E+IH+RWA
Sbjct: 46 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 103 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 161
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 162 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 221
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 222 FGFFVQAIVTGKGPLENLADHIADPVNNN 250
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 136/222 (61%), Gaps = 29/222 (13%)
Query: 62 PVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS 121
PV+ SP WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+
Sbjct: 42 PVSDSP-------WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFA 91
Query: 122 KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-- 179
K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 92 KNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSL 150
Query: 180 IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKV 223
+ + ++ A V+ ++ D L+PGG FDPLGLA+DP++ A LKV
Sbjct: 151 VHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKV 210
Query: 224 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
KE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 211 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|118489455|gb|ABK96530.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 265
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 128/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G E+VWFK GA + L+Y G I + A+ A
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-ESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 164
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D ++PGG FDPLGLA DPD FA LKVKE+KNGRLA F+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLATFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GPVENL HL+DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVENLLDHLADPVANN 253
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVI-AE 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 162
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 142/235 (60%), Gaps = 30/235 (12%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 169 DGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLG 210
L+Y G + + A+ A V+ ++ D L+PGG FDPLG
Sbjct: 113 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 172
Query: 211 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 173 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 135/226 (59%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
++KPV+ + WYG DR +L E P YLTGE PGDYG+D GLS P
Sbjct: 40 GRAKPVSSG------SPWYGTDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 90
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 91 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 149
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A V+ ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 150 NPNLVHAQSILAIWASQVILMGAVEGYRIGGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 209
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 210 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 108 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 166
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLG A DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 167 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGPADDPEAFAELKVKEIKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 227 FGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 142/235 (60%), Gaps = 30/235 (12%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 3 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 51
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 52 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 110
Query: 169 DGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLG 210
L+Y G + + A+ A V+ ++ D L+PGG FDPLG
Sbjct: 111 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 170
Query: 211 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 171 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 225
>gi|3126854|gb|AAC15992.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
Length = 263
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 135/210 (64%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-NI----PINLVFAV 188
AMLGA G + PE +K G G EAVWFK GA + L+Y G N+ I ++AV
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 189 IAEIVLDLE-------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++ +E DK++P G FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPSGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVANN 251
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 132/221 (59%), Gaps = 23/221 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 182 INLVFAVIAEIVL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVK 224
+ A+ A V+ + ED L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 154 AQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVK 213
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
E+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 104 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 162
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D L+PGG FDPLGLA DP+ FA LKVKEIKNGR AMF+M
Sbjct: 163 VVLMGAVEGYRIAGGPLGKVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRSAMFSM 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 104/224 (46%), Positives = 134/224 (59%), Gaps = 22/224 (9%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGPDR +L G +P YL GE PGDYG+D GLS P+ F++Y+ E
Sbjct: 24 VTRASVEFYGPDRAKWL--GPFSDGAVPSYLKGEFPGDYGWDSAGLSADPETFARYREIE 81
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKTGALLLDGNTLNYFGKNIPIN--- 183
+IHARWAMLGA G + PE GA + G AVWFK GA + + LNY G I+
Sbjct: 82 VIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDGLNYLGNPSLIHAQS 141
Query: 184 LVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
+V ++ ++V+ D L+PGG FDPLGLA DPD A LKVKE+K
Sbjct: 142 IVAVLLTQLVIMGAAEAYRYAGEGPVETSGDSLYPGGAFDPLGLADDPDTLAELKVKELK 201
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
NGRLAMF+M GFF+QA +TG+ P+ENLA HL+DP N V +
Sbjct: 202 NGRLAMFSMFGFFVQALITGKSPLENLADHLADPSTANGFAVAT 245
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 142/235 (60%), Gaps = 30/235 (12%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 169 DGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLG 210
L+Y G + + A+ A V+ ++ D L+PGG FDPLG
Sbjct: 113 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 172
Query: 211 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 173 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 130/210 (61%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 92
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G + PE K G G EAVWFK GA + L+Y G +NI L
Sbjct: 93 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 151
Query: 187 AVIAEIVLDLE-----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
VI +++ D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 152 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 211
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 212 MFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH RW
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G + PE +K G G EAVWFK G+ + L+Y G I + AV A
Sbjct: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWAS 163
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P+ L SE P YLTGE PGDYG+D GLS P+ F++ E+IH RW
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 163
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLSDHIADPVANN 253
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 132/221 (59%), Gaps = 23/221 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVEFG-EAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 182 INLVFAVIAEIVL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVK 224
+ A+ A V+ + ED L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 154 AQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVK 213
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
E+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 149/260 (57%), Gaps = 35/260 (13%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA--PPAKSKPVAVSPVNEELAKWYGPDRRIFL 84
SA A G S + V F + + KS P ++ WYG DR
Sbjct: 8 QSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSI---------WYGEDR---- 54
Query: 85 PEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH RWAMLGA G +
Sbjct: 55 PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVF 114
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL------ 194
PE +K G G EAVWFK G+ + L+Y G + + A+ A ++VL
Sbjct: 115 PEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEG 173
Query: 195 ---------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 245
+ DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA V
Sbjct: 174 YRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 233
Query: 246 TGEGPVENLAKHLSDPFANN 265
TG+GP+ENL+ H++DP ANN
Sbjct: 234 TGKGPIENLSDHINDPVANN 253
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH RW
Sbjct: 21 WYGEDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRW 76
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 77 AMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 135
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 136 QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 195
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct: 196 MFGFFVQAIVTGKGPIENLSDHIADPVANN 225
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 130/210 (61%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G + PE K G G EAVWFK GA + L+Y G +NI L
Sbjct: 94 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 187 AVIAEIVLDLE-----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
VI +++ D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 153 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 212
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPVQNLDDHLANPGVNN 242
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 142/235 (60%), Gaps = 30/235 (12%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 3 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 51
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 52 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 110
Query: 169 DGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLG 210
L+Y G + + A+ A V+ ++ D L+PGG FDPLG
Sbjct: 111 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 170
Query: 211 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 171 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 225
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 128/214 (59%), Gaps = 25/214 (11%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGP R FL G P YLTGE PGDYG+D GLS P F++Y+ E+IHARW
Sbjct: 37 SWYGPSRPKFL--GPYSDGATPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARW 94
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 190
AMLGA G ++PE + G N WF GA + + L Y G IN +V +I
Sbjct: 95 AMLGALGCVVPELLD--GTN---HIAWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIV 149
Query: 191 EIVLDLE---------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
+++L D ++PGG FDPLGLA DPD F+ LKVKEIKNGRLAM +
Sbjct: 150 QVILMSYVEGYRVNGGPAGTGLDAVYPGGSFDPLGLADDPDTFSELKVKEIKNGRLAMLS 209
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 269
M GFF+QA VTGEGP+ENL KHL+D ANN ++
Sbjct: 210 MFGFFIQAIVTGEGPIENLNKHLADASANNFYSL 243
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 129/210 (61%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 32 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 88
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 89 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 147
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 148 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 207
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 208 MFGFFVQAIVTGKGPIENLADHLADPVNNN 237
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH RW
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G + PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVTFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAA 163
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLYDHVADPVANN 253
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 73 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 131
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 132 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 191
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 192 FGFFVQAIVTGKGPLENLADHLADPVNNN 220
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQ 163
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA D + FA LKVKEIKNGRLAMF+M
Sbjct: 164 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YL GE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVKYLGP---FSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQ 164
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ F+ LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFSELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 132/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSDQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 106 MLGALGIVFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF++
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSV 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 107/220 (48%), Positives = 134/220 (60%), Gaps = 25/220 (11%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A +K V+VS + WYGPDR ++L E P YLTGE PGDYG+D GLS P
Sbjct: 41 ATTKKVSVS---ASTSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 94
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 95 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 153
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A V+ ++ D ++PGG FDPLGLA DPD FA
Sbjct: 154 NPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFA 213
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+
Sbjct: 214 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLA 253
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 17 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 73
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 74 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 132
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 133 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 192
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 193 FGFFVQAIVTGKGPLENLADHIADPVNNN 221
>gi|302810440|ref|XP_002986911.1| light-harvesting complex [Selaginella moellendorffii]
gi|300145316|gb|EFJ11993.1| light-harvesting complex [Selaginella moellendorffii]
Length = 267
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 127/209 (60%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 51 WYGPDRPKFLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 108 MLGALGCVTPELLAKNGIKFG-EAVWFKAGSQIFKEGGLDYLGNPNLVHAQSILAIWASQ 166
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 167 VILMGAVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSM 226
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF QA VTG+GP+ENL HL +P NN
Sbjct: 227 FGFFTQAIVTGKGPIENLLDHLDNPTVNN 255
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 190 bits (482), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P Y TGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+K+GRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKHGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 105/221 (47%), Positives = 130/221 (58%), Gaps = 21/221 (9%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V A++YGPDR FL P YL GE PGDYG+D GLS P+ FS+Y
Sbjct: 17 ATRQVTRASAEFYGPDRVKFLGP---FSGATPSYLKGEYPGDYGWDTAGLSADPETFSRY 73
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
+ E+IHARWAMLGA G + PE K GA EAVWFK GA + L+Y G ++
Sbjct: 74 RELEVIHARWAMLGALGCVTPELLQKNGAANFGEAVWFKAGAQIFQDGGLDYLGNANLVH 133
Query: 184 ---LVFAVIAEIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 225
+V ++ +IVL ++ D ++PG FDPLGLA DPD A LKVKE
Sbjct: 134 AQSIVAVLLTQIVLMGLIEGYRVNGGPAGEITDPIYPGEAFDPLGLADDPDTLAELKVKE 193
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNL 266
IKNGRLAM +M GFF+QA VTG+GP+ENL HL+ P N
Sbjct: 194 IKNGRLAMVSMFGFFIQAIVTGKGPIENLNDHLAAPGETNF 234
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 190 bits (482), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 129/210 (61%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 48 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 163
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 164 VILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 MFGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|16805332|gb|AAL29886.1|M97171_1 chlorophyll a/b binding protein type II [Glycine max]
Length = 265
Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|358248712|ref|NP_001240183.1| uncharacterized protein LOC100793702 [Glycine max]
gi|255635740|gb|ACU18219.1| unknown [Glycine max]
Length = 265
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L +IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCTFPEILEKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 189 bits (481), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G PE K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP++NL H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIQNLYDHVADPVANN 253
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 129/210 (61%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 16 WYGSDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 73 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 132 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 191
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 192 MFGFFVQAIVTGKGPIENLADHLADPVNNN 221
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 130/210 (61%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 27 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARW 84
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + LNY G I N+V +
Sbjct: 85 AMLGALGIVTPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAV 143
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
+++L + D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 144 QVILLGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFS 203
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP++NL HLS+P NN
Sbjct: 204 SFGFFVQAIVTGKGPIQNLDDHLSNPGVNN 233
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+ P NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLAGPVNNN 251
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/221 (47%), Positives = 132/221 (59%), Gaps = 23/221 (10%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G +
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVH 153
Query: 182 INLVFAVIAEIVL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVK 224
+ A+ A V+ + ED L+PGG FDPLGLA DP+ FA LKVK
Sbjct: 154 AQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVK 213
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
E+KNGRLAMF+M GFF+QA VTG+GP+ENL+ HL+DP NN
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPLENLSDHLADPVNNN 254
>gi|126566046|gb|ABO20852.1| chlorophyll a/b binding protein of LHCII type I [Lilium
longiflorum]
Length = 264
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGADRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-NI----PINLVFAVI 189
MLGA G + PE +K G G EAVWFK GA + L+Y G N+ I ++AV
Sbjct: 105 MLGALGCVFPELLSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 163
Query: 190 AEIVLDLE-------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
++ +E D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 164 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GPVENL HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPVENLYDHLADPATNN 252
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 166 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA L+DP NN
Sbjct: 226 FGFFVQAIVTGKGPLENLADPLADPVNNN 254
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 106 MLGALGCDFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFST 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHLADPVNNN 253
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 104 MLGALGIVFPEPLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 162
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D +PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF++
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPTYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSV 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F++ E+IH+RWA
Sbjct: 47 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 104 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 162
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 163 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 223 FGFFVQAIVTGKGPLENLADHLADPVNNN 251
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 128/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 29 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 85
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EA WFK G+ + L+Y G I + A+ A
Sbjct: 86 MLGALGCVFPELLARNGVKFG-EACWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQ 144
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPL LA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 145 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKELKNGRLAMFSM 204
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 205 FGFFVQAIVTGKGPLENLADHLADPVNNN 233
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 44 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 100
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 101 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 159
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 160 VVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSM 219
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 220 FGFFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQ 165
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 166 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHLADPANNN 254
>gi|149392272|gb|ABR25974.1| chloroplast chlorophyll a-b binding protein precursor [Oryza sativa
Indica Group]
Length = 253
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 135/210 (64%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDY +D GLS P+ F++ + E+IH+RW
Sbjct: 37 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYRWDTAGLSADPETFARNRELEVIHSRW 92
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-NI----PINLVFAV 188
AMLGA G + PE +K G G EAVWFK GA + L+Y G N+ I ++AV
Sbjct: 93 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 151
Query: 189 IAEIVLDLE-------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++ +E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 152 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 211
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 212 MFGFFVQAIVTGKGPIENLFDHVADPVANN 241
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 130/210 (61%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE IP YLTGE PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAT 163
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D L+PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VT +GPV+NL H++DP ANN
Sbjct: 224 MFGFFVQAIVTDKGPVQNLYDHVADPVANN 253
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 141/235 (60%), Gaps = 30/235 (12%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 169 DGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLG 210
L+Y G + + A+ A V+ ++ D L+PGG FDPLG
Sbjct: 113 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 172
Query: 211 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LA DP+ FA KVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 173 LADDPEAFAEXKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 227
>gi|413968458|gb|AFW90566.1| chlorophyll a/b-binding protein [Solanum tuberosum]
Length = 271
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 133/210 (63%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P+ L SE P Y TGE PGDYG+D GLS P+ F++ + E+IH RW
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYSTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAC 163
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL+ H++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLSDHINDPVANN 253
>gi|449453598|ref|XP_004144543.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
gi|449511798|ref|XP_004164056.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G E+VWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLAKNGVKFG-ESVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D ++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPIENLFDHVADPVANN 253
>gi|1006704|emb|CAA89823.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Pseudotsuga menziesii]
Length = 234
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 18 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 74
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 75 MLGALGCVFPELLAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQ 133
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 134 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSM 193
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 194 FGFFVQAIVTGKGPIENLFDHLADPTANN 222
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 44 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 100
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 101 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 159
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 160 VVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSM 219
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 220 FGFFVQAIVTGKGPIENLFDHVADPVANN 248
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 131/210 (62%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G + PE K G G EAVWFK GA + L+Y G + N+V +
Sbjct: 94 AMLGALGCLTPELLAKNGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAC 152
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
+++L + D L+PG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 153 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKELKNGRLAMFS 212
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPVQNLDDHLANPTVNN 242
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 46 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A +
Sbjct: 103 MLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 162 VVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSM 221
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 222 FGFFVQAIVTGKGPIENLFDHVADPVANN 250
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQ 163
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VVLMGFIEGYRVGGGPLGEGLDSIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+D ANN
Sbjct: 224 FGFFVQAIVTGKGPIENLFDHLADLAANN 252
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 52 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 108
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 109 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 167
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 168 VVLMGAVEGYRIAGGPLGEVVDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 227
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL DP NN
Sbjct: 228 FGFFVQAIVTGKGPLENLADHLFDPVNNN 256
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/226 (48%), Positives = 139/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L R E P YLTG+ PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGADRVLYL--GPLSR-EPPSYLTGDFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ FSK + E+IH RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A ++VL ++ D L+PGG FDPLGLA+ P F
Sbjct: 149 NPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEIVDPLYPGGRFDPLGLAERPQAFD 208
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GF +QA VTG+GP+ENLA H++DP NN
Sbjct: 209 ALKVKEIKNGRLAMFSMFGFLVQAIVTGKGPLENLADHIADPVNNN 254
>gi|365268967|gb|AEW70716.1| light harvesting chlorophyll a-b binding protein 2-1 [Phyllostachys
edulis]
Length = 263
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE GDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/203 (50%), Positives = 126/203 (62%), Gaps = 22/203 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 55 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 111
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 112 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 170
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 171 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 230
Query: 237 LGFFLQAYVTGEGPVENLAKHLS 259
GFF+QA VTG+GP+ENLA HL+
Sbjct: 231 FGFFVQAIVTGKGPIENLADHLA 253
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 130/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G + + + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA L+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADPLADPVNNN 253
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 129/210 (61%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L E P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWA
Sbjct: 28 WYGSDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWA 84
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 85 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQ 143
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+
Sbjct: 144 VILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFS 203
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 204 MFGFFVQAIVTGKGPLENLADHLADPVNNN 233
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 103/198 (52%), Positives = 123/198 (62%), Gaps = 22/198 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +FL E P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 41 WYGPERPLFLGA---FTGEPPSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWA 97
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G I PE +G G EAVWFK GA + L+Y G + + A++
Sbjct: 98 MLGALGCIFPELLGSYGVPFG-EAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQ 156
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
VL + DKL+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 157 VLLMGAIEGYRVNGGPLGEGLDKLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 216
Query: 237 LGFFLQAYVTGEGPVENL 254
GFF+QA VTG+GP++NL
Sbjct: 217 FGFFVQAIVTGKGPLQNL 234
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 128/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 29 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 85
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EA WFK G+ + L+Y G I + A+ A
Sbjct: 86 MLGALGCVFPELLARNGVKFG-EASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQ 144
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPL LA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 145 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSM 204
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL++P NN
Sbjct: 205 FGFFVQAIVTGKGPLENLADHLAEPVNNN 233
>gi|126362926|gb|ABO10493.1| light-harvesting chlorophyll a/b binding protein [Bambusa oldhamii]
Length = 263
Score = 188 bits (477), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + +IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELGVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFVEGYRIGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 129/210 (61%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EFYGPNRAKWL--GPYSENSTPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G + PE K G G EAVWFK GA + L+Y G +NI L
Sbjct: 94 AMLGALGCLTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAV 152
Query: 187 AVIAEIVLDLE-----------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
VI +++ D L+PG FDPLGLA DPD FA LKVKEIKNG LAMF+
Sbjct: 153 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGALAMFS 212
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 213 MFGFFVQAIVTGKGPVQNLDDHLANPGVNN 242
>gi|357121229|ref|XP_003562323.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Brachypodium distachyon]
Length = 263
Score = 187 bits (476), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 47 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 103
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE +K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 104 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 162
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + DK++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 163 VVLMGFIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSM 222
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GPVENL H++DP NN
Sbjct: 223 FGFFVQAIVTGKGPVENLFDHVADPVNNN 251
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ F LKVKE+K GRLAM +M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHIADPVNNN 253
>gi|312281813|dbj|BAJ33772.1| unnamed protein product [Thellungiella halophila]
Length = 266
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAS 164
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 165 QVVLMGLIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 224
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHLADPVANN 254
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 138/231 (59%), Gaps = 29/231 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K++ S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 34 ARVTMRKSSTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 83
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 84 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 142
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A +++L ++ D ++PGG FDP
Sbjct: 143 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDP 202
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
LGLA DPD FA LKVKE+KNGRLAMF+M GFF QA VTG+GP+ENLA HL+
Sbjct: 203 LGLADDPDAFAELKVKELKNGRLAMFSMFGFFXQAIVTGKGPIENLADHLA 253
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P+ L SE P YLTGE PGDYG+D GLS P+ F++ + E+IH RW
Sbjct: 49 WYGEDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 163
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + DK++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL ++DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDQINDPVANN 253
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 133/210 (63%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 133/210 (63%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 127/210 (60%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG +R +L E P YLTGE PGDYG+D GLS P+ F++ + ++IH RWA
Sbjct: 50 WYGSERVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 166 VILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFS 225
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFAQAIVTGKGPLENLADHLADPVNNN 255
>gi|297835814|ref|XP_002885789.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297331629|gb|EFH62048.1| Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 265
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 133/210 (63%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 133/210 (63%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 115/259 (44%), Positives = 152/259 (58%), Gaps = 27/259 (10%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE-LAKWYGPDRRIFLP 85
+SA++ S+ + +T KP +K A + + V + WYGPDR P
Sbjct: 3 TSAIQHSS--FAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDR----P 56
Query: 86 EGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G P
Sbjct: 57 KYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFP 116
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL------- 194
E +K G G EAVWFK G+ + L+Y G I + A+ A ++VL
Sbjct: 117 EILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGY 175
Query: 195 --------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 246
+ D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+M GFF+QA VT
Sbjct: 176 RIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVT 235
Query: 247 GEGPVENLAKHLSDPFANN 265
G+GP+ENL H++DP ANN
Sbjct: 236 GKGPIENLFDHIADPVANN 254
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 187 bits (474), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 133/210 (63%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 49 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 164 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
>gi|108709619|gb|ABF97414.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 219
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 105/208 (50%), Positives = 133/208 (63%), Gaps = 22/208 (10%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YGPDR +L + P YLTGE PGDYG+D GLS P+ F++ + E+IH+RWAM
Sbjct: 4 YGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAM 60
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-NI----PINLVFAVIA 190
LGA G + PE +K G G EAVWFK GA + L+Y G N+ I ++AV
Sbjct: 61 LGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQV 119
Query: 191 EIVLDLE-------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 237
++ +E DK++PGG FDPLGLA DPD FA LKVKE+KNGRLAMF+M
Sbjct: 120 VLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMF 179
Query: 238 GFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 180 GFFVQAIVTGKGPIENLFDHVADPVANN 207
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 186 bits (473), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 128/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
M GA G + PE ++ G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 105 MPGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA P+ FA LKVKEIKNGRLAMF+M
Sbjct: 164 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADVPEAFAELKVKEIKNGRLAMFSM 223
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 224 FGFFVQAIVTGKGPLENLADHLADPVNNN 252
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 186 bits (473), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 127/210 (60%), Gaps = 22/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L + P YLTGE GDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 38 EFYGPNRAKWLGP---FSTATPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARW 94
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G I PE K G G EAVWFK GA + LNY G + I + A +A
Sbjct: 95 AMLGALGCITPELLAKNGVPFG-EAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLAC 153
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 154 QVILMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFS 213
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 214 MFGFFVQAIVTGQGPIANLDAHLSDPSGNN 243
>gi|3560529|gb|AAC34983.1| light harvesting chlorophyll A/B binding protein [Prunus persica]
Length = 265
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K E+IH+RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNGELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-NI----PINLVFAVI 189
MLGA G + PE +K G G EAVWFK G+ + L+Y G N+ I ++AV
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWAVQ 164
Query: 190 AEIVLDLE-------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
++ +E D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAM +M
Sbjct: 165 VVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMTSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GPVENL H++DP ANN
Sbjct: 225 FGFFVQAIVTGKGPVENLYDHVADPVANN 253
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25
Length = 226
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K + E+IH RW
Sbjct: 10 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRW 65
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 66 AMLGALGCVFPELLVKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAC 124
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+
Sbjct: 125 QVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 184
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 185 MFGFFVQAIVTGKGPIENLYDHLADPVANN 214
>gi|162461878|ref|NP_001105427.1| light harvesting chlorophyll a /b binding protein [Zea mays]
gi|22230|emb|CAA37474.1| light harvesting chlorophyll a /b binding protein [Zea mays]
Length = 265
Score = 186 bits (472), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 133/209 (63%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAV FK G+ + L+Y G I + A+ A +
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVGFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 164
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+K GRLAMF+M
Sbjct: 165 VVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKKGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA H++DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENLADHIADPVNNN 253
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 130/210 (61%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L P YL+GE PGDYG+D GLS P+ F+KY+ E+IHARWA
Sbjct: 19 WYGEDRPKWLGP---FSGNTPSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWA 75
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G + G EAVW+K GA + L+Y G + + A++A
Sbjct: 76 MLGALGCLTPELLAKNGVSFG-EAVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAILASQ 134
Query: 193 VLDLE----------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
VL + DK++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 135 VLLMGAIEGYRVYGGPGGEGLDKVYPGGDYFDPLGLADDPDTFAELKVKEIKNGRLAMFS 194
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 195 MFGFFVQAIVTGKGPLENLESHLADPSVNN 224
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/207 (48%), Positives = 128/207 (61%), Gaps = 22/207 (10%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
+E + WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F++ + E+
Sbjct: 48 SESPSPWYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEV 104
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 186
IH+RWAMLGA G + PE + G G EAVWFK GA + L+Y G I +
Sbjct: 105 IHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSIL 163
Query: 187 AVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 230
A+ A V+ ++ D ++PGG FDPLGLA DPD FA LKVKE+KNGR
Sbjct: 164 AIWASQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKELKNGR 223
Query: 231 LAMFAMLGFFLQAYVTGEGPVENLAKH 257
LAMF+M GFF+QA VTG+GP+ENLA H
Sbjct: 224 LAMFSMFGFFVQAIVTGKGPIENLADH 250
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 132/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTG+ PGDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-----KNIPINLVFAV 188
AMLGA G PE +K G N G EAVWFK GA + L+Y G + I ++AV
Sbjct: 103 AMLGALGCFFPEILSKNGVNFG-EAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAV 161
Query: 189 IAEIVLDLE-------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++ +E DK++PGG FD LGLA+DPD FA KVKE NGRLAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDHLGLAEDPDTFAEFKVKEFNNGRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MLGFF+QA VTG+GP+EN H++DP ANN
Sbjct: 222 MLGFFVQAIVTGKGPIENFFDHVADPVANN 251
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/206 (47%), Positives = 127/206 (61%), Gaps = 20/206 (9%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
++ V+ +WYGPDR +L G ++P YLTGE PGDYG+D GLS P+ F Y
Sbjct: 17 SIRNVSRNAVEWYGPDRAKWL--GPFSEGDVPSYLTGEFPGDYGWDTAGLSADPETFKAY 74
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IP 181
+ ELIHARWAMLGA G + PE +K+G E+VWFK G+ + L+Y G + I
Sbjct: 75 REQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSNLIH 134
Query: 182 INLVFAVI-AEIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 225
+ A++ ++VL + D LHPG FDPLGLA DPD FA LKVKE
Sbjct: 135 AQSILAILGCQVVLMGLIEAYRVNGGPLGEGLDPLHPGDKFDPLGLADDPDTFAELKVKE 194
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPV 251
IKNGRLAMF+M GF++QA VTG+GP+
Sbjct: 195 IKNGRLAMFSMFGFYVQAIVTGKGPI 220
>gi|146150144|gb|ABQ02463.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 130/210 (61%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE GDYG+D GLS P+ F++ + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFAGDYGWDTAGLSADPETFARNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAE 191
AMLGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 103 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAS 161
Query: 192 IVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + DK++PGG FDPLGLA DPD FA LKVKE+KNG LAMF+
Sbjct: 162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGSLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP NN
Sbjct: 222 MFGFFVQAIVTGKGPIENLFDHVADPVNNN 251
>gi|116779839|gb|ABK21446.1| unknown [Picea sitchensis]
Length = 266
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDY +D GLS P+ F+K + E+IH+RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYRWDTAGLSADPETFAKNRELEVIHSRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQ 165
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 166 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP NN
Sbjct: 226 FGFFVQAIVTGKGPIENLFDHLADPANNN 254
>gi|297815030|ref|XP_002875398.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321236|gb|EFH51657.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 133/210 (63%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGSPNLIHAQSILAIWAC 164
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+
Sbjct: 165 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFS 224
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|115782|sp|P04784.1|CB21_WHEAT RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|170674|gb|AAA34260.1| chlorophyll a/b-binding protein precursor [Triticum aestivum]
Length = 266
Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 138/226 (61%), Gaps = 28/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
AK+K V+ S + WYG DR ++L G L E P YLTGE PGDYG+D GLS P
Sbjct: 39 AKAKQVSSS------SPWYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EA WFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAGWFKAGSQIFSDGGLDYLG 148
Query: 178 KNIPIN---LVFAVIAEIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
++ L+ ++VL ++ D L+PGG FDPLGLA+ P FA
Sbjct: 149 NPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLAERPQAFA 208
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E+LA H++DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 127/209 (60%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 106 MLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQ 164
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 165 VVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA V G+GP+ENL+ L+ P ANN
Sbjct: 225 FGFFVQAIVPGKGPIENLSDPLAAPVANN 253
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 103/216 (47%), Positives = 136/216 (62%), Gaps = 23/216 (10%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V ++YGP+R +L G +S P YL GE PGDYG+D GLS P+ F++Y+ E
Sbjct: 29 VTRAAIEFYGPNRAGYL--GPFTKS--PSYLNGEYPGDYGWDTAGLSADPETFARYREIE 84
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---L 184
+IHARWAMLGA G + PE K G + G EAVW+K G+ + L+Y G I+ +
Sbjct: 85 VIHARWAMLGALGCVTPELLAKNGVSFG-EAVWWKAGSQIFAPGGLDYLGNPSLIHAQSI 143
Query: 185 VFAVIAEIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
+ V ++++L + D L+PG FDPLGLA DPD FA L+VKEIKNG
Sbjct: 144 IAIVFSQVLLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFAELRVKEIKNG 203
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
RLAMF+M GFF+QA VTG+GP+ENLA HL++P NN
Sbjct: 204 RLAMFSMFGFFVQAIVTGKGPIENLADHLANPSVNN 239
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 128/210 (60%), Gaps = 21/210 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 92
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIA 190
AMLGA G PE K G G EAVWFK GA + L+Y G + N+V
Sbjct: 93 AMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAV 151
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
+++L + D L+PG FDPLGLA DPD FA LKVKEIKNGRLA F+
Sbjct: 152 QVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFS 211
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GPV+NL HL++P NN
Sbjct: 212 MFGFFVQAIVTGKGPVQNLDDHLANPTVNN 241
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 135/227 (59%), Gaps = 29/227 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 39 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 88
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 89 GWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 147
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A +++L ++ D ++PGG FDP
Sbjct: 148 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 207
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 208 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 254
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 132/227 (58%), Gaps = 29/227 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 39 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 88
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 89 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 147
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A V+ ++ D ++PGG FDP
Sbjct: 148 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 207
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 208 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 254
>gi|31323256|gb|AAP44089.1| chlorophyll a/b binding protein [Brassica oleracea]
Length = 273
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 126/210 (60%), Gaps = 23/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG +R +L E P YLTG+ PGDYG+D GLS P+ F + + E+IH RWA
Sbjct: 50 WYGSERVKYLGP---FSGEPPSYLTGQFPGDYGWDTAGLSAVPETFVRNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 165
Query: 193 VL-----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + ED L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 166 VILMGAVEGYRVPGDGPLGEAEDLLYPGGSFDPLGLATDPVAFAELKVKEIKNGRLAMFS 225
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 226 MFGFFVQAIVTGKGPLENLADHLADPVNNN 255
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 143/259 (55%), Gaps = 38/259 (14%)
Query: 52 KKAAPPAKSKPV--AVSPVNEE--LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
KK P K PV A PV+++ +AKWYGP+R+++LP GLL ++++P YL G + GDYG
Sbjct: 66 KKPTPATKRAPVKAARQPVDQKAAIAKWYGPNRKLYLPGGLLTKADLPSYLDGTLAGDYG 125
Query: 108 YDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 167
+DP GL Y+ E++HARWAML G +IPEA N P VW +TG +
Sbjct: 126 FDPLGLGAD-GKVKDYRVAEILHARWAMLAVPGVVIPEALNI------PGGVWTETGKVF 178
Query: 168 LDGNT-----LNYFGKNIPINLVF---------------------AVIAEIVLDLEDKLH 201
LDG T L ++ I +V E + D ++
Sbjct: 179 LDGETGRDSILEFWPIYAAIQVVLMGGAEKFRQDGVGPAGFVPFKGKFEESAFNGLDPVN 238
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
PGGP D +AK+P +LKVKEIKNGRLAM AMLG F+Q VTGEGP N KH+++P
Sbjct: 239 PGGPLDFFDVAKNPQDLQILKVKEIKNGRLAMIAMLGVFVQGAVTGEGPAANWGKHVANP 298
Query: 262 FANNLLTVISGNAERAPTL 280
F N +T+ SG +R P L
Sbjct: 299 FGYNFVTITSG-IDRTPVL 316
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 137/244 (56%), Gaps = 37/244 (15%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFL----PEGLLDRSEIPEYLTGEVPG 104
F+ K+A + A V ++YGPDR FL PE +YLTGE PG
Sbjct: 3 FALKQAVATKAAATRATRQVTRAAVEFYGPDRAKFLGPFTPE--------SDYLTGEFPG 54
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P FS+Y+ E+IHARWAMLGA G I PE K G G EAVWFK G
Sbjct: 55 DYGWDTAGLSADPQTFSRYREVEVIHARWAMLGALGCITPELLAKNGVPFG-EAVWFKAG 113
Query: 165 ALLLDGNTLNYFGKN--IPINLVFAVIAEIVL--------------------DLEDKLHP 202
A + LNY G + + A +A V+ DL D L+P
Sbjct: 114 AQIFQDGGLNYLGNENLVHAQSILATLAVQVILMGAAEAYRANGGAPGGFGEDL-DSLYP 172
Query: 203 GGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG F DPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ NL HL+DP
Sbjct: 173 GGKFFDPLGLADDPDTLAELKVKELKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLADP 232
Query: 262 FANN 265
NN
Sbjct: 233 SGNN 236
>gi|297815028|ref|XP_002875397.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
gi|297321235|gb|EFH51656.1| LHCB2:4 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 132/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 50 WYGPDR----PKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 106 AMLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAC 164
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF
Sbjct: 165 QVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFP 224
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPIENLFDHIADPVANN 254
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 101/199 (50%), Positives = 123/199 (61%), Gaps = 22/199 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 60 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 116
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 117 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 175
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 176 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSM 235
Query: 237 LGFFLQAYVTGEGPVENLA 255
GFF+QA VTG+GP+ENLA
Sbjct: 236 FGFFVQAIVTGKGPIENLA 254
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 110/251 (43%), Positives = 140/251 (55%), Gaps = 34/251 (13%)
Query: 46 VALFSKKKAAPPAKSKPVAVSPVNEELAK-------WYGPDRRIFLPEGLLDRSEIPEYL 98
VA +++ A A K AK +YGP+R +FL GL E P YL
Sbjct: 4 VAFRAQRAVAAKAGRKTTVSVQARRTQAKKAVPESPFYGPNRPLFL-GGL--SGEPPAYL 60
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158
GE PGDYG+D GLS P+ F +Y+ ELIHARWA+LGA G ++PE + G +
Sbjct: 61 NGEFPGDYGWDTAGLSADPETFKRYRQLELIHARWALLGALGCVVPELLARNGVAMPADG 120
Query: 159 VWFKTGALLLDGNTLNYFGKNIPINLVFA--VIAEIVLDLE------------------- 197
VWFK GA + LNY G NLV A ++A +++ L
Sbjct: 121 VWFKVGAEIFKEGGLNYLGNE---NLVHAQSIVATLLVQLVLMGWAEGYRINGGPLGEGL 177
Query: 198 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
D L+PGG FDPLGLA DPD A LKVKE+KNGR+AM AM GF +QA VT +GP+ENLA H
Sbjct: 178 DPLYPGGAFDPLGLADDPDTLAELKVKELKNGRMAMAAMFGFLVQAIVTQKGPLENLADH 237
Query: 258 LSDPFANNLLT 268
L+ P NN+ +
Sbjct: 238 LAAPGTNNVFS 248
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 140/257 (54%), Gaps = 31/257 (12%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 7 AATASSSTGLRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 63
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE------------- 197
E VWFK GA + L+Y G NLV A VL +
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVVLMGLVEGYRIN 180
Query: 198 --------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+ L+PGGP FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct: 181 GLPGVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
Query: 249 GPVENLAKHLSDPFANN 265
GP+ENL HL +P ANN
Sbjct: 241 GPLENLLDHLDNPVANN 257
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 114/256 (44%), Positives = 142/256 (55%), Gaps = 31/256 (12%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK--WYGPDRRIFLPEGLLDR 91
A AS+ + K ++K+A P + VA+ + WYGPDR +L
Sbjct: 5 AATASSATVVKQTPFLGQRKSANPLRDV-VAMGTSKFTMGNDLWYGPDRVKYLGP---FS 60
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 61 AQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWV 120
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE-------------- 197
E VWFK G+ + L+Y G NLV A VL +
Sbjct: 121 RVDFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAVLGFQIVLMGLVEGFRING 177
Query: 198 -------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+G
Sbjct: 178 LPDVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 237
Query: 250 PVENLAKHLSDPFANN 265
P+ENL HL +P ANN
Sbjct: 238 PLENLLDHLDNPVANN 253
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 184 bits (466), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 106/227 (46%), Positives = 132/227 (58%), Gaps = 29/227 (12%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +KA S + SP WYGPDR ++L E P YLTGE PGDY
Sbjct: 18 ARVTMRKATTKKVSASASTSP-------WYGPDRVLYLGP---FSGEPPSYLTGEFPGDY 67
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA
Sbjct: 68 GWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQ 126
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDP 208
+ L+Y G + + A+ A V+ ++ D ++PGG FDP
Sbjct: 127 IFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDP 186
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
LGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA
Sbjct: 187 LGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 233
>gi|115775|sp|P10049.1|CB21_PINTH RecName: Full=Chlorophyll a-b binding protein type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20935|emb|CAA31773.1| chlorophylla/b-binding preprotein (AA -37 to 229) [Pinus
thunbergii]
Length = 266
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 129/210 (61%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D +S P+ F+K + E+IH RW
Sbjct: 50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRW 105
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 106 AMLGALGCVFPELLAKNGLKFG-EAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWAC 164
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L PGG FDPLGLA DP+ A LKVKEIKNGRLAMF+
Sbjct: 165 QVVLMGLIEGYRVGGGTLGEGLDPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFS 224
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 225 MFGFFVQAIVTGKGPIENLYDHLADPVANN 254
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 113/254 (44%), Positives = 142/254 (55%), Gaps = 33/254 (12%)
Query: 37 ASNPSTFKPVALFSKKKAAPPAKSKPVAVSP---VNEELAKWYGPDRRIFLPEGLLDRSE 93
AS+ + K ++K+A P + +P + +L WYGPDR +L ++
Sbjct: 8 ASSATVVKQTPFLGQRKSANPLRDVVAMGTPKFTMGNDL--WYGPDRVKYLGP---FSAQ 62
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN 153
P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRV 122
Query: 154 CGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE---------------- 197
E VWFK G+ + L+Y G NLV A VL +
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAVLGFQIVLMGLVEGFRINGLP 179
Query: 198 -----DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 180 DVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
Query: 252 ENLAKHLSDPFANN 265
ENL HL +P ANN
Sbjct: 240 ENLLDHLDNPVANN 253
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 183 bits (465), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 140/257 (54%), Gaps = 31/257 (12%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 7 AATASSSTGLRPTQFVGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 63
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE------------- 197
E VWFK GA + L+Y G NLV A VL +
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVVLMGLVEGYRIN 180
Query: 198 --------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+ L+PGGP FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct: 181 GLPGVGEGNDLYPGGPYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 240
Query: 249 GPVENLAKHLSDPFANN 265
GP+ENL HL +P ANN
Sbjct: 241 GPLENLLDHLDNPVANN 257
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 97/193 (50%), Positives = 123/193 (63%), Gaps = 20/193 (10%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S P YL GE PGDYG+D GLS P+ F++Y+ E+IHARWAMLGA G + PE ++ G
Sbjct: 9 SATPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNG 68
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL-------------- 194
E VW+K GA +L L+Y GK ++ +V + +++L
Sbjct: 69 FTF-QEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAAGSAP 127
Query: 195 --DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 252
D DKL+PGGPFDPL A DPD A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E
Sbjct: 128 GVDGLDKLYPGGPFDPLEFASDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 187
Query: 253 NLAKHLSDPFANN 265
NL HL+ P+ANN
Sbjct: 188 NLNDHLASPYANN 200
>gi|452341|emb|CAA48641.1| type II light-harvesting chlorophyll a /b-binding protein [Zea
mays]
Length = 229
Score = 183 bits (464), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 133/210 (63%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG++ G+S P+ F++ + E+IH+RW
Sbjct: 13 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWETAGVSADPETFARNRELEVIHSRW 68
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE K G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 69 AMLGALGCVFPEILAKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAC 127
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + DK++PGG F+PLGLA DPD A LKVKE+KNGRLAMF+
Sbjct: 128 QVVLMGFVEGYGVGGGPLGEGLDKVYPGGAFEPLGLADDPDTAAELKVKELKNGRLAMFS 187
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 188 MFGFFVQAIVTGKGPIENLFDHVADPVANN 217
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 107 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 163
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 164 GFQVILMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 223
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 224 MFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 256
>gi|19423289|gb|AAL88458.1|AF479779_1 major light-harvesting complex II protein m7 [Chlamydomonas
reinhardtii]
Length = 258
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 138/243 (56%), Gaps = 29/243 (11%)
Query: 49 FSKK----KAAPPAK---SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
FS+K A PPA+ K A P ++YGP+R +L G + P Y +
Sbjct: 7 FSRKALQVSARPPARRGTGKTAASRPPPAPGIEFYGPNRAKWL--GPYSENATPAYRLAK 64
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G I PE K G G EAVWF
Sbjct: 65 FPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQFG-EAVWF 123
Query: 162 KTGALLLDGNTLNYFG-----------------KNIPINLV--FAVIAEIVLDLEDKLHP 202
K GA + L+Y G K I + LV + V + D L+P
Sbjct: 124 KAGAQIFSEGGLDYLGNPSLVHAQNIRRHPGRFKVILMGLVEGYRVNGGPAGEGLDPLYP 183
Query: 203 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
G FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP++NL HLS+P
Sbjct: 184 GESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIQNLDDHLSNPT 243
Query: 263 ANN 265
NN
Sbjct: 244 VNN 246
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 121/189 (64%), Gaps = 18/189 (9%)
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
LTGE PGDYG+D GLS P+ F KY+ ELIHARWAMLGA G + PE ++G E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 158 AVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAEIVL---------------DLEDK 199
+VWF+ GA + L+Y G I+ + VI++++L + D
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNGGPAGEGLDP 120
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG+GPVEN A+H++
Sbjct: 121 LYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAIVTGKGPVENWAEHVA 180
Query: 260 DPFANNLLT 268
DPF N +
Sbjct: 181 DPFTANAFS 189
>gi|225690804|gb|ACO06088.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 263
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 131/210 (62%), Gaps = 24/210 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH+RW
Sbjct: 47 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-NI----PINLVFAV 188
AMLGA G + PE +K G G EAVWFK GA + L+Y G N+ I ++AV
Sbjct: 103 AMLGALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAV 161
Query: 189 IAEIVLDLE-------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++ +E D ++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+
Sbjct: 162 QVVLMGFIEGYRVGGGPLDEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GPVENL L DP NN
Sbjct: 222 MFGFFVQAIVTGKGPVENLFDQLRDPGNNN 251
>gi|116789194|gb|ABK25154.1| unknown [Picea sitchensis]
Length = 240
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/194 (52%), Positives = 121/194 (62%), Gaps = 18/194 (9%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKT---GALLLDGNTLNYFGKNIPINLVFAVIAE 191
MLGA G + PE K G G EAVWFK ++L G Y P+
Sbjct: 107 MLGALGCVFPELLAKTGVKFG-EAVWFKAIWASQVVLMGLIEGYRVGGGPLG-------- 157
Query: 192 IVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
+ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+
Sbjct: 158 ---EGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 214
Query: 252 ENLAKHLSDPFANN 265
ENL HL+DP ANN
Sbjct: 215 ENLFDHLADPTANN 228
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 108 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 164
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 165 GFQVILMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 224
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 225 MFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 257
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 54 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 110
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 111 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 167
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 168 GFQVILMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 227
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 228 MFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 260
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 111/257 (43%), Positives = 138/257 (53%), Gaps = 31/257 (12%)
Query: 34 APGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + A P P+ WYGPDR +L
Sbjct: 4 AATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYLGP---F 60
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 61 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKW 120
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE------------- 197
E +WFK GA + L+Y G NLV A VL +
Sbjct: 121 LRVDFKEPIWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVVLMGLVEGFRIN 177
Query: 198 --------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct: 178 GLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 237
Query: 249 GPVENLAKHLSDPFANN 265
GP+ENL HL +P ANN
Sbjct: 238 GPLENLLDHLDNPVANN 254
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 137/238 (57%), Gaps = 29/238 (12%)
Query: 54 AAPPAKSKP---VAVSPVNEELAK----WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A PA + P VA + N ++ WYGPDR +L ++ P YL+GE PGDY
Sbjct: 21 GARPAVASPLRDVAAAASNGRISMSNELWYGPDRVKYLGP---FSAQTPSYLSGEFPGDY 77
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F++ +A E+IH RWAMLGA G + PE K+ E VWFK GA
Sbjct: 78 GWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGAQ 137
Query: 167 LLDGNTLNYFGKN--IPINLVFAVIAEIVLDLE----------------DKLHPGGP-FD 207
+ L+Y G + + AV+ VL + + L+PGG FD
Sbjct: 138 IFSEGGLDYLGNPNLVHAQSILAVLGSQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFD 197
Query: 208 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
PLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 198 PLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 255
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRLKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 106 MLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 162
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 163 GFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 222
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL H+ +P ANN
Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 255
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/258 (43%), Positives = 141/258 (54%), Gaps = 31/258 (12%)
Query: 32 TSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAK--WYGPDRRIFLPEGLL 89
+ A AS+ + K + K A P + VA+ ++ WYGPDR +L
Sbjct: 3 SMAATASSTTVVKATPFLGQTKNANPLRDV-VAMGSARFTMSNDLWYGPDRVKYLGP--- 58
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K
Sbjct: 59 FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEK 118
Query: 150 FGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE------------ 197
+ E VWFK G+ + L+Y G NLV A VL +
Sbjct: 119 WVKVDFKEPVWFKAGSQIFSDGGLDYLGNP---NLVHAQSILAVLGFQVVLMGLVEGFRI 175
Query: 198 ---------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG
Sbjct: 176 NGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 235
Query: 248 EGPVENLAKHLSDPFANN 265
+GP+ENL HL +P ANN
Sbjct: 236 KGPLENLLDHLDNPVANN 253
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/217 (48%), Positives = 128/217 (58%), Gaps = 31/217 (14%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYG +R +L +S P YLTGE PGDYG+D GLS P F Y+ E+IHARW
Sbjct: 88 EWYGENRPKYLGP---FQSYTPAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARW 144
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 193
AMLGA G I PE N G N VWFK G + + N ++Y G NLV A A V
Sbjct: 145 AMLGALGCIFPELLNSAGFNL---PVWFKAGGTIFE-NGIDYLGNP---NLVHAQSALAV 197
Query: 194 LDLE---------------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
L ++ D L+PGG FDPLG AKDP + A LKVKEIKNGRLA
Sbjct: 198 LSVQVVLMGASEAYRFNGGPLGEPADVLYPGGAFDPLGFAKDPSKAAELKVKEIKNGRLA 257
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 269
M AMLG+++QA TG+GP+ENL++HL+DP NN V
Sbjct: 258 MTAMLGYYVQALATGKGPIENLSEHLADPSKNNGFAV 294
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 45 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 158
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 159 GFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLA 218
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 219 MFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|115773|sp|P04159.1|CB21_PEA RecName: Full=Chlorophyll a-b binding protein AB96; AltName:
Full=LHCII type I CAB-AB96; Short=LHCP; AltName:
Full=Major 15
gi|169051|gb|AAA33650.1| polypeptide 15 precursor, partial [Pisum sativum]
Length = 228
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/209 (47%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
W+GPD +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWA
Sbjct: 12 WHGPDGVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWA 68
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 69 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 127
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M
Sbjct: 128 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSM 187
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+ A VTG+GP+ENLA HL+DP NN
Sbjct: 188 FGFFVPAIVTGKGPLENLADHLADPVNNN 216
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 45 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 102 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 158
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 159 GFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLA 218
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 219 MFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 251
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 129/226 (57%), Gaps = 21/226 (9%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A V +WYGP+R FL G S P YL GE PGDYG+D GLS P+ F++Y
Sbjct: 18 ATRQVTRASVEWYGPNRPQFL--GPFSGS-TPSYLKGEYPGDYGWDTAGLSADPETFARY 74
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
+ E+IHARWAMLGA G + PE G EAVWFK GA + L+Y G I+
Sbjct: 75 RELEVIHARWAMLGALGCVTPELLQNNGVASFGEAVWFKAGAQIFQEGGLDYLGNPSLIH 134
Query: 184 ---LVFAVIAEIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 225
+V ++ ++ L + D L+PG FDPLGLA DPD F+ LKVKE
Sbjct: 135 AQSIVAVLLTQLTLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFSELKVKE 194
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
+KNGRLAM +M GFF+Q VT +GP+ENL HL+ P A N + +
Sbjct: 195 LKNGRLAMVSMFGFFVQGIVTKKGPIENLNDHLASPDATNFWAIYA 240
>gi|1661160|gb|AAB18404.1| chlorophyll a/b binding protein [Oryza sativa Indica Group]
Length = 265
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 126/209 (60%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE GDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 49 WYGADRVLYL--GPLS-GEPPSYLTGEFSGDYGWDTAGLSADPETFAKNRELEVIHCRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+
Sbjct: 106 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQ 164
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG DPLGLA DP+ FA LKVKEIKNGRLAM +M
Sbjct: 165 VVFMGAVEGYRVAGGPLGEVVDPLYPGGSLDPLGLADDPEAFAELKVKEIKNGRLAMLSM 224
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+EN+ HL+DP NN
Sbjct: 225 FGFFVQAIVTGKGPLENITDHLADPVNNN 253
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 127/210 (60%), Gaps = 22/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +FL P YL GE PGDYG+D GLS P+ F++ +A ELIH RWA
Sbjct: 48 WYGPDRPLFLGP---FSGNTPSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-NI----PINLVFAVI 189
MLGA G I PE K+ E VWFK GA + L+Y G N+ I V+AV
Sbjct: 105 MLGALGCITPELLQKYSRVTLKEPVWFKAGAQIFSDGGLDYLGNPNLIHAQSILAVWAVQ 164
Query: 190 AEIVLDLE-------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++ +E L+PGG FDPLGLA DP+ A LKVKE+KNGRLAMF+
Sbjct: 165 VVLMGAVEAYRTNGLPGVGEGGDLYPGGKYFDPLGLADDPETLAELKVKELKNGRLAMFS 224
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL++P +NN
Sbjct: 225 MFGFFVQAIVTGKGPLENLLDHLANPVSNN 254
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNP---NLVHAQSILAVL 161
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 162 GFQVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 221
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 222 MFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 106 MLGALGCITPEVLQKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 162
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 163 GFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 222
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSDGGLDYLGNP---NLVHAQSILAVL 161
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 162 GFQVVLMGLVEGYRINGLPGVGDGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 221
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 222 MFSMFGFFVQAIVTGKGPLENLLDHLADPVANN 254
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 124/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 103 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 159
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 160 GFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 219
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 220 MFSMFGFFIQAIVTGKGPLENLLDHLDDPVANN 252
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 181 bits (458), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 130/240 (54%), Gaps = 39/240 (16%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
E LAKWYGPDR+++LP GLL ++++P YL G + GDYG+DP GL +Y+ E+
Sbjct: 96 KEALAKWYGPDRKLYLPGGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GAIKQYRVAEV 154
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV 188
IHARWAML G +IPEA P VW +TG + LDG T F PI VFA
Sbjct: 155 IHARWAMLAIPGVVIPEALGL------PGGVWTETGKVFLDGETGRPFFLENPI--VFAA 206
Query: 189 IA----------------------------EIVLDLEDKLHPGGPFDPLGLAKDPDQFAL 220
+ E D ++PGGP D +A +P AL
Sbjct: 207 VQVALMAGVEQFRSSGEGPAGFVPFKGKFDESAFKGLDPINPGGPLDFFNVASNPQDLAL 266
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
LKVKEIKNGRLAM AMLG F+Q TGEGP N KH++DPF N +T+ + +R P L
Sbjct: 267 LKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFGYNFVTLQA--VDRTPVL 324
>gi|326510279|dbj|BAJ87356.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 219
Score = 180 bits (456), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 129/208 (62%), Gaps = 22/208 (10%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH+RWAM
Sbjct: 4 YGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAM 60
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EI 192
LGA G + PE +K G G EAVWFK GA + L+Y G + + A+ A ++
Sbjct: 61 LGALGCVFPEILSKNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQV 119
Query: 193 VL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 237
VL + D ++PGG FDPLGLA DPD A LKVKE+KNGRLAMF+M
Sbjct: 120 VLMGFIEGYRVGGGPLGEGLDIIYPGGAFDPLGLADDPDTAAELKVKELKNGRLAMFSMF 179
Query: 238 GFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GPVENL H++DP NN
Sbjct: 180 GFFVQAIVTGKGPVENLFDHIADPVNNN 207
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 98/191 (51%), Positives = 120/191 (62%), Gaps = 19/191 (9%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE ++ G
Sbjct: 37 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGV 96
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL---------------- 194
G EAVWFK GA + L+Y G + + A+ A V+
Sbjct: 97 KFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLG 155
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
+ L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 156 KVTGPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 215
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 216 ADHLADPVNNN 226
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 6 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 62
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 63 MLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 119
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 120 GFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLA 179
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 180 MFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 212
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 124/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 43 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 99
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 100 MLGALGCITPEVLQKWVNVNFKEPVWFKAGAQIFSQGGLDYLGNP---NLVHAQSILAVL 156
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 157 GFQVLLMGAVEGFRINGLDGVGNGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 216
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+EN HL +P ANN
Sbjct: 217 MFSMFGFFVQAIVTGKGPLENWLDHLDNPVANN 249
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 106/214 (49%), Positives = 126/214 (58%), Gaps = 30/214 (14%)
Query: 75 WYGPDRRIFL-PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR +L P + + P YLTGE PGDYG+D GLS P+ F+K +A E+IH RW
Sbjct: 47 WYGPDRVKYLGPFSV----QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRW 102
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 193
AMLGA G I PE K+ E VWFK G+ + L+Y G NLV A V
Sbjct: 103 AMLGAFGCITPEVLQKWVRVEFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAV 159
Query: 194 LDLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRL 231
L + + L+PGG FDPLGLA DP FA LKVKEIKNGRL
Sbjct: 160 LGFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRL 219
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
AMF+M GFF+QA VTG+GP+ENL H+ DP ANN
Sbjct: 220 AMFSMFGFFVQAIVTGKGPLENLLDHIDDPVANN 253
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 141/257 (54%), Gaps = 37/257 (14%)
Query: 37 ASNPSTFKPVALFSKKKAAP--PAKSKPVAVSP---VNEELAKWYGPDRRIFL-PEGLLD 90
S+ S P + KA+ P + SP + +L WYGPDR +L P +
Sbjct: 6 TSSSSVLTPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDL--WYGPDRVKYLGPFSV-- 61
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
+ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 62 --QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 119
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE------------- 197
E VWFK G+ + L+Y G NLV A VL +
Sbjct: 120 VRVDFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVILMGLVEGFRIN 176
Query: 198 --------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct: 177 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 249 GPVENLAKHLSDPFANN 265
GP+ENL HL +P ANN
Sbjct: 237 GPLENLLDHLDNPVANN 253
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 124/209 (59%), Gaps = 27/209 (12%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L G RS P YL GE PGDYG+D GLS P+ FS+Y+ E+IHARWA
Sbjct: 66 WYGADRPGYL--GAFTRS--PSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWA 121
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 191
MLGA G ++PE ++ WF GA + + Y G IN ++ V +
Sbjct: 122 MLGALGIVVPELLDQTN-----HVAWFDAGATIFGPKGIQYLGVPGLINAKNIIATVAVQ 176
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
++L + DK++PG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 177 VILMGAIEGYRVNGGPAGEGLDKVYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSN 236
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ NL HL++P NN
Sbjct: 237 FGFFVQAIVTGKGPIANLNDHLANPTVNN 265
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 141/257 (54%), Gaps = 37/257 (14%)
Query: 37 ASNPSTFKPVALFSKKKAAP--PAKSKPVAVSP---VNEELAKWYGPDRRIFL-PEGLLD 90
S+ S P + KA+ P + SP + +L WYGPDR +L P +
Sbjct: 6 TSSSSVLSPTTFLGQTKASSFNPLRDVVSLGSPKYTMGNDL--WYGPDRVKYLGPFSV-- 61
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
+ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+
Sbjct: 62 --QTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKW 119
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE------------- 197
E VWFK G+ + L+Y G NLV A VL +
Sbjct: 120 VRVDFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVILMGLVEGFRIN 176
Query: 198 --------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct: 177 GLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 236
Query: 249 GPVENLAKHLSDPFANN 265
GP+ENL HL +P ANN
Sbjct: 237 GPLENLLDHLDNPVANN 253
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 124/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 51 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 107
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 108 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 164
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 165 GFQVVLMGLVEGFRINGLDGVGEGNNLYPGGQYFDPLGLADDPATFAELKVKEIKNGRLA 224
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 225 MFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 257
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 124/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G + PE K+ E VWFK G+ + L+Y G NLV A VL
Sbjct: 107 MLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAVL 163
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 164 GFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 223
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 224 MFSMFGFFVQAIVTGKGPLENLFDHLDDPVANN 256
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 113/263 (42%), Positives = 142/263 (53%), Gaps = 34/263 (12%)
Query: 29 AVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSP----VNEELAKWYGPDRRIFL 84
A A AS+ S +P ++ ++ V++ + EL WYGPDR +L
Sbjct: 2 ASTVMAATASSSSVLRPTPFLGQRGSSANPLKDVVSMGNGKYIMGNEL--WYGPDRVKYL 59
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
++ P YL GE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I P
Sbjct: 60 GP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITP 116
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE------- 197
E K+ E VWFK GA + L+Y G NLV A VL +
Sbjct: 117 EVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVVLMGLV 173
Query: 198 --------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 242
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+Q
Sbjct: 174 EGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQ 233
Query: 243 AYVTGEGPVENLAKHLSDPFANN 265
A VTG+GP+ENL HL +P ANN
Sbjct: 234 AIVTGKGPLENLLDHLDNPVANN 256
>gi|115784|sp|P08222.1|CB22_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|167525|gb|AAA33125.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 206
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 96/191 (50%), Positives = 124/191 (64%), Gaps = 19/191 (9%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+ WAMLGA G + PE ++ G
Sbjct: 5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGV 64
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL--------------- 194
G EAVWFK G+ + L+Y G + + A+ A ++VL
Sbjct: 65 KFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLG 123
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 124 EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 183
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 184 ADHLADPVNNN 194
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 130/217 (59%), Gaps = 26/217 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 49 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 104
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA- 190
AMLGA G + PE +K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 105 AMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAV 163
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 164 QVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFS 223
Query: 236 MLGFFLQAYVTGEGPVEN--LAKHLSDPFANNLLTVI 270
M GFF+QA VTG+GP+EN + + P L T +
Sbjct: 224 MFGFFVQAIVTGKGPIENSLITLRIQCPTCMGLRTTL 260
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 124/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 52 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 108
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK G+ + L+Y G NLV A VL
Sbjct: 109 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAVL 165
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 166 GFQVLLMGLVEGFRINGLPGVGEGNNLYPGDQYFDPLGLADDPATFAELKVKEIKNGRLA 225
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 226 MFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 258
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK G+ + L+Y G NLV A VL
Sbjct: 103 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAVL 159
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 160 GFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 219
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL H+ +P ANN
Sbjct: 220 MFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 252
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK G+ + L+Y G NLV A VL
Sbjct: 105 MLGALGCITPEVLEKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAVL 161
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 162 GFQVVLMGLVEGFRINGLPGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 221
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL H+ +P ANN
Sbjct: 222 MFSMFGFFVQAIVTGKGPLENLLDHIDNPVANN 254
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 127/210 (60%), Gaps = 22/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 50 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVFA 187
MLGA G I PE K+ E VWFK GA + L+Y G ++I L F
Sbjct: 107 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 166
Query: 188 VIAEIVLD-----------LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
VI +++ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 167 VILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 226
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 227 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 256
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 127/210 (60%), Gaps = 22/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVFA 187
MLGA G I PE K+ E VWFK GA + L+Y G ++I L F
Sbjct: 106 MLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 165
Query: 188 VIAEIVLD-----------LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
VI +++ + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 166 VILMGLVEGYRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 225
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 226 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 124/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YL GE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK G+ + L+Y G NLV A VL
Sbjct: 103 MLGALGCITPEVLEKWLKVDFKEPVWFKAGSQIFTEGGLDYLGNP---NLVHAQSILAVL 159
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 160 GFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 219
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL DP ANN
Sbjct: 220 MFSMFGFFVQAIVTGKGPLENLLDHLDDPVANN 252
>gi|543938|sp|Q00827.1|CB48_MAIZE RecName: Full=Chlorophyll a-b binding protein 48, chloroplastic;
AltName: Full=LHCII type I CAB-48; Short=LHCP; Flags:
Precursor
gi|22228|emb|CAA44888.1| chlorophyll a/b binding protein precursor [Zea mays]
Length = 264
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 110/265 (41%), Positives = 147/265 (55%), Gaps = 31/265 (11%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P A F + +K AA P ++ + SP WYG
Sbjct: 1 MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKPKPAR--SGSP-------WYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L S P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA+
Sbjct: 52 DRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVG 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL- 194
G + PE + G G E VWFK G+ + L++ G + + A+ A ++VL
Sbjct: 109 LGCVFPELLARNGVKFG-EGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLM 167
Query: 195 --------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ D L+ GG FDPLGL DP++FA LKVKEIKNGRLAMF+M GFF
Sbjct: 168 GAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFF 227
Query: 241 LQAYVTGEGPVENLAKHLSDPFANN 265
+QA VTG+GP+ENLA HL+DP NN
Sbjct: 228 VQAIVTGKGPIENLADHLTDPVNNN 252
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 125/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 13 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 69
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E +WFK GA + L+Y G NLV A VL
Sbjct: 70 MLGALGCITPEVLEKWLRVDFKEPIWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 126
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 127 GFQVVLMGLVEGFRINGLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 186
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 187 MFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 219
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 124/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F+K +A E+IH RWA
Sbjct: 46 WYGPDRVKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWA 102
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK G+ + L+Y G NLV A VL
Sbjct: 103 MLGAFGCITPEVLEKWVKVDFKEPVWFKAGSQIFTEGGLDYLGNP---NLVHAQSILAVL 159
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP A LKVKEIKNGRLA
Sbjct: 160 GFQVVLMGLVESFRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTLAELKVKEIKNGRLA 219
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 220 MFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 252
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 124/213 (58%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE GDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRVKYLGP---FSAQTPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 106 MLGALGCITPEVLEKWVRVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 162
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA L+VKEIKNGRLA
Sbjct: 163 GFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELRVKEIKNGRLA 222
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 255
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 113/294 (38%), Positives = 153/294 (52%), Gaps = 46/294 (15%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPV-------AVSPVNEELAKW 75
P+ ++ V+T A P P+ +K AAP K+ PV V+ + +KW
Sbjct: 50 PVKKTAPVKTVKKAAPAPKKTVPMKTVVRK-AAPVRKAAPVRKAGKASGVNQAGSDKSKW 108
Query: 76 YGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
YGP+RR++LP GLLD +++P Y+ G + GDYG+DP L K ++Y+ E+ HARWA
Sbjct: 109 YGPNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQLGKD-GKIAQYRIAEVQHARWA 167
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLN-------YFGKNIPINLVFA 187
ML G +IPEA G N W +TG + LDG Y I + L+
Sbjct: 168 MLAVPGVVIPEALGVPGGN------WTETGKVFLDGEAGRPEILGNPYLFTAIEVALLAG 221
Query: 188 VIAEIVLDLE--------------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIK 227
V LE D ++PGGP D L +A P+ A+LKVKEIK
Sbjct: 222 VEGYRSGKLEAPAGFAPIYGKFEGKDFKGLDPINPGGPLDFLNVASTPEDLAILKVKEIK 281
Query: 228 NGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
NGRLAM AMLG F+Q T GEGP N AKH++DPFA N +T+ + +R P L
Sbjct: 282 NGRLAMIAMLGVFVQGATTGGEGPATNWAKHVADPFAYNFVTISA--IDRTPVL 333
>gi|3417451|dbj|BAA32346.1| light-harvesting chlorophyll a/b-binding protein of photosystem II
[Cryptomeria japonica]
Length = 266
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 130/226 (57%), Gaps = 29/226 (12%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A PV+ SP WYGPDR +L E P YLTGE P G P P
Sbjct: 40 ATKAPVSSSP-------WYGPDRVKYLGP---FSGEPPSYLTGEFPVTTGGTPPVCQPDP 89
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IHARWAMLGA G + PE ++ G G EAVWFK G+ + L+Y G
Sbjct: 90 ETFAKNRELEVIHARWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLG 148
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A V+ ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 149 NPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEITDPLYPGGSFDPLGLADDPEAFA 208
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKEIKNGRLAMF+M GF++QA VTG+GP+ENLA HL+DP NN
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPLENLADHLADPVNNN 254
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 148/287 (51%), Gaps = 45/287 (15%)
Query: 27 SSAVRTSAPG-----ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
+ V+ +AP A P+ K + KK K+ PV + +L+KWYGP R+
Sbjct: 17 AKTVKKTAPAKKAVPAKKPTPAKKAPVTVKKTVK---KAAPVKTTVKTADLSKWYGPQRK 73
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
++LP GLL ++IP YL G++ GDYG+DP GL +Y+ E+IHARWAML G
Sbjct: 74 LYLPSGLLTTADIPSYLDGKLAGDYGFDPLGLGAD-GAIKQYRVAEVIHARWAMLAVPGI 132
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE---- 197
+IPEA N G + W +TG + L+G+T + + + + A + ++ E
Sbjct: 133 VIPEALNIAGGD------WRETGKVFLEGSTGRFGPAELWLGIAVAPLIVLMGGAEKFRS 186
Query: 198 ------------------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAM 233
D ++PGGP D +A P +LKVKEIKNGRLAM
Sbjct: 187 DPASAPSGFVPFKGSFTGKDFAKLDPINPGGPLDFYNVAATPQDLEILKVKEIKNGRLAM 246
Query: 234 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
AMLG F+Q TGEGP N KH++DPF N +T+ + +R P L
Sbjct: 247 IAMLGVFVQGATTGEGPAANWGKHVADPFGYNFVTLNA--VDRTPVL 291
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 123/213 (57%), Gaps = 28/213 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L ++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWA
Sbjct: 49 WYGPDRLKYLGP---FSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWA 105
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK GA + L+Y G NLV A VL
Sbjct: 106 MLGALGCITPEVLQKWVRVSFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVL 162
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 163 GFQVILMGLVEGYRINGLPGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 222
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M FF+QA VTG+G +ENL H+ +P ANN
Sbjct: 223 MFSMFRFFVQAIVTGKGSLENLLDHIDNPVANN 255
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/257 (42%), Positives = 137/257 (53%), Gaps = 39/257 (15%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGYDP 110
+KAAP KS V +L+KWYGP+RR++LP GLLD +++P YL G + GDYG+DP
Sbjct: 63 RKAAPVRKSSGKRGDGV--DLSKWYGPNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDP 120
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
L K +Y+A E+IHARWAML G +IPEA P VW +TG + LDG
Sbjct: 121 LQLGKD-GKVEQYRAAEVIHARWAMLAIPGIVIPEALGI------PGGVWTETGKVFLDG 173
Query: 171 NTLN-------YFGKNIPINLVFAV--------------------IAEIVLDLEDKLHPG 203
Y I I L AV + D ++PG
Sbjct: 174 EAGRPEILQNPYLFAAIQIGLFAAVEGYRAGKAPAPDGFVPFKGKFSGSDFSGLDPINPG 233
Query: 204 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 263
GP D +A PD A+LKVKEIKNGRLAM AMLG F+Q TGEGP N KH++DPF
Sbjct: 234 GPLDFFNVAATPDDLAVLKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVADPFG 293
Query: 264 NNLLTVISGNAERAPTL 280
N +T+ + ER P L
Sbjct: 294 YNFVTISA--IERTPVL 308
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/218 (44%), Positives = 132/218 (60%), Gaps = 24/218 (11%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR +LP+ L + +P+YLTGE PGDYG+D GLS P+ F+ Y+ EL+HARW
Sbjct: 124 EWYGPDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARW 181
Query: 134 AMLGAAGFIIPEAFN-KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVI 189
AMLGA G I PE +G E VWFK GAL+L+ +++Y G ++ ++
Sbjct: 182 AMLGALGCIFPEILAMNYGVGL-EEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAA 240
Query: 190 AEIVL----------------DLEDKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLA 232
A+++L + DK+HPGG F+PL KD A LKVKEIKNGRLA
Sbjct: 241 AQVLLMGGAEAYRASGVAPNGEEFDKMHPGGYYFNPLKFGKDEADLAELKVKEIKNGRLA 300
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
MF+MLGF++QA TG GP++NL H +D N+ +
Sbjct: 301 MFSMLGFYIQAATTGNGPLQNLVDHRADAANENIFKYV 338
>gi|195616522|gb|ACG30091.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 241
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 138/249 (55%), Gaps = 22/249 (8%)
Query: 19 MLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGP 78
M + ++S P S F + +K A P KP A + WYG
Sbjct: 1 MAAATMALTSRALVGKPATSTRDVFGEGRITMRKTAGKP---KPAASG------SPWYGA 51
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++L G L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA
Sbjct: 52 DRVLYL--GPLS-GQPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGA 108
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVLDL 196
G + PE + G G EAVWFK G+ + L+Y G I + A+ A V+ +
Sbjct: 109 LGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLM 167
Query: 197 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 256
G + +A DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GPVENLA
Sbjct: 168 -------GAVEGYRIADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENLAD 220
Query: 257 HLSDPFANN 265
HL+DP NN
Sbjct: 221 HLADPVNNN 229
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 127/210 (60%), Gaps = 22/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PG+YG+D GLS P+ F+K +A E+IH RWA
Sbjct: 3 WYGPDRVKYLGP---FSVQTPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWA 59
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVFA 187
MLGA G I PE K+ E VWFK G+ + L+Y G ++I L F
Sbjct: 60 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQ 119
Query: 188 VI-AEIVLDLE----------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
VI +V L + L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+
Sbjct: 120 VILMGLVEGLRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFS 179
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 180 MFGFFVQAIVTGKGPLENLLDHLDNPVANN 209
>gi|145079397|tpg|DAA05913.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Acetabularia acetabulum]
Length = 245
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 128/235 (54%), Gaps = 52/235 (22%)
Query: 38 SNPSTFKPVALFSKKKAAP---PAKSKPVAVSPVN----------EELAKWYGPDRRIFL 84
S K ALFSK K+AP P+ K A + + L KWYGP R +FL
Sbjct: 14 STSRVVKVNALFSKGKSAPKRSPSPKKSAAGTKKTGGWLGGEGGAQNLDKWYGPSRVLFL 73
Query: 85 PEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIP 144
P GLL+RS++P YLTG++ GDYGYDP GL K P+ KY+A+ELIHARWAML AAG IIP
Sbjct: 74 PSGLLERSDVPAYLTGDLAGDYGYDPLGLGKDPEQVQKYRAFELIHARWAMLAAAGMIIP 133
Query: 145 EAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV------FAVIA-------- 190
E GA+ A WF+TGA +L+G TLNYF +P +V FA++A
Sbjct: 134 EGLAANGADI-KGATWFETGAEMLNGGTLNYFA--VPWAIVSNPLPLFAIVAVEVGLMGA 190
Query: 191 ----------------------EIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKV 223
V D D LHPGGPFDPLGLA DP+ F LKV
Sbjct: 191 AENYRRTGTGPKGYSPGVGNFESSVFDGLDSLHPGGPFDPLGLADDPEVFQELKV 245
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 93/191 (48%), Positives = 115/191 (60%), Gaps = 21/191 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R FL + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 37 WYGPERPQFLGP---FSGDCPSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWA 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K+G E+VWFK G+ + L+Y G + + + A++
Sbjct: 94 MLGALGCVTPEILAKYGGVSFGESVWFKAGSQIFQEGGLDYLGNSSLVHAQYILAILGCQ 153
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
VL + D L+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M
Sbjct: 154 VLLMGAIEAYRVNGGPLGEGLDPLYPGGQFDPLGLADDPDTFAELKVKEIKNGRLAMFSM 213
Query: 237 LGFFLQAYVTG 247
GF++QA VTG
Sbjct: 214 FGFYVQALVTG 224
>gi|115828|sp|P20865.1|CB2_DUNSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167987|gb|AAA33278.1| major chlorophyll binding protein [Dunaliella salina]
Length = 273
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 125/211 (59%), Gaps = 23/211 (10%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGPD G + + P TGE PGDYG+D GLS P+ F +Y+ ELIHAR
Sbjct: 56 QFYGPDAT----SGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARC 111
Query: 134 AMLGAAGFIIPEAF-NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVI 189
+LGA G + PE ++ G G A+WFK GA + LNY G I N+V +
Sbjct: 112 GLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLA 171
Query: 190 AEIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
++VL + D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF
Sbjct: 172 VQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMF 231
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
A LGFF+QA VTG+GP+ENL HL++P NN
Sbjct: 232 ACLGFFVQAIVTGKGPIENLTDHLANPAENN 262
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 128/224 (57%), Gaps = 25/224 (11%)
Query: 42 TFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGE 101
TF + +KK +++ + +P N WYGPDR FL + P YLTGE
Sbjct: 8 TFIGSQVANKKMVTSMRRTQKKSSAPDN----VWYGPDRPQFLGP---FSGDCPSYLTGE 60
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F +Y+ ELIHARWAMLGA G + PE +K+G E+VWF
Sbjct: 61 FPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWF 120
Query: 162 KTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVLDLE----------------DKLHPG 203
K G+ + L+Y G + + + A++ VL + D L+PG
Sbjct: 121 KAGSQIFQEGGLDYLGNSNLVHAQSILAILGCQVLLMGAIEAYRVNGGPLGEGLDPLYPG 180
Query: 204 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247
FDPLGLA DPD FA LK+KEIKNGRLAMF+M GF++QA VTG
Sbjct: 181 DKFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTG 224
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 127/210 (60%), Gaps = 22/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL ++ P YL GE PGDYG+D GLS P+ F++ +A ELIH RWA
Sbjct: 45 WYGPDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE +K+ E VWFK G+ + L+Y G + + A+ A +
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 192 IVL-------------DLED--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++L D+ + L+PGG FDPLG A DP+ A LKVKEIKNGRLAMF+
Sbjct: 162 VILMGLVEGYRINGLPDVGEGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 222 MFGFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 127/210 (60%), Gaps = 22/210 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR FL ++ P YL GE PGDYG+D GLS P+ F++ +A ELIH RWA
Sbjct: 45 WYGPDRVKFLGP---FSAQTPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWA 101
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE +K+ E VWFK G+ + L+Y G + + A+ A +
Sbjct: 102 MLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQ 161
Query: 192 IVL-------------DLED--KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++L D+ + L+PGG FDPLG A DP+ A LKVKEIKNGRLAMF+
Sbjct: 162 VILMGLVEGYRINGLPDVGEGGDLYPGGQYFDPLGFADDPETLAELKVKEIKNGRLAMFS 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
M GFF+QA VTG+GP+ENL HL +P NN
Sbjct: 222 MFGFFVQAIVTGKGPLENLFDHLDNPVVNN 251
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 93/195 (47%), Positives = 118/195 (60%), Gaps = 22/195 (11%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P + L++WYGPDR +L G L ++P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 143 APAADNLSQWYGPDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADPVTLARYRE 199
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 200 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 259
Query: 184 ---LVFAVIAEIVLDLE--------------DKLHPGGPFDPLGLAKDPDQFALLKVKEI 226
L F I+ +E D+L+PGGPFDPLGLA DPD FA LKVKE+
Sbjct: 260 SVVLTFLSTLAIMGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEV 319
Query: 227 KNGRLAMFAMLGFFL 241
KNGRLAM AMLGF++
Sbjct: 320 KNGRLAMVAMLGFYV 334
>gi|356510907|ref|XP_003524175.1| PREDICTED: uncharacterized protein LOC100789010 [Glycine max]
Length = 320
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/109 (78%), Positives = 91/109 (83%), Gaps = 13/109 (11%)
Query: 185 VFAVIAEIVL-------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 231
+ AV+AEIVL DLEDKLHPGGPFDPLGLAKDPDQ ALLKVKEIKNGRL
Sbjct: 212 ILAVVAEIVLVGGAEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRL 271
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280
AMFAMLGF+ QAYVTGEGPVENLAKHLSDPF NNLLTVI+G+ ERAPTL
Sbjct: 272 AMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSTERAPTL 320
>gi|13265505|gb|AAG40044.2|AF324693_1 At2g34430 [Arabidopsis thaliana]
Length = 268
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 129/223 (57%), Gaps = 25/223 (11%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
A P + WYG DR +L G E P YLTGE PGDYG+D GLS P+ F++
Sbjct: 38 ASKPTGPSGSPWYGSDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFARN 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK----------------TGALL 167
+ E+IH+RWAMLGA G + PE + G G EAVW + T +L+
Sbjct: 95 RELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWVQGWFTDLQRRRIGPTWATPSLV 153
Query: 168 LDGNTLNYFGKNIPINLVFAVIAEI-----VLDLEDKLHPGGPFDPLGLAKDPDQFALLK 222
++ G + + + + + ED L+PGG FDPLGLA DP+ FA LK
Sbjct: 154 HAQEHFSHLGYSSYPHGSLLRATRVPGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELK 213
Query: 223 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
VKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 214 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 256
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 150/255 (58%), Gaps = 34/255 (13%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
KK +A SK A++ + + WYG +R +L D P+YLTGE+PGDYG+D
Sbjct: 89 KKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYD---YPKYLTGELPGDYGFDI 145
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GLS+ P F K+ +E++HARWAML + G ++PE + FGA E +W++ G L G
Sbjct: 146 AGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKG 205
Query: 171 NTLNYFGKNIP-INL-------VFAVIAEIVL------------DLE--------DKLHP 202
+TL+Y G IP ++L V A+ I++ LE D +P
Sbjct: 206 DTLDYLG--IPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYP 263
Query: 203 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG FDPL L+KD + F LKVKEIKNGRLAM A LGF+ QA +TG+GPV+NL H++DP
Sbjct: 264 GGVLFDPLNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLNHIADP 323
Query: 262 FANNLLTVISGNAER 276
F NN L++++ + R
Sbjct: 324 FHNNFLSLLNSSFSR 338
>gi|115791|sp|P09755.1|CB22_SOYBN RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18548|emb|CAA31418.1| chlorophyll a/b binding preprotein (AA -33 to 223) [Glycine max]
Length = 256
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 122/209 (58%), Gaps = 30/209 (14%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE GLS P+ F+K + E+IH+RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWA 96
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 97 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQ 155
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D ++PGG FDPLGLA DP+ A LKVKE+KNGRLAMF+M
Sbjct: 156 VILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSM 215
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 216 FGFFVQAIVTGKGPLENLADHLADPVNNN 244
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 128/223 (57%), Gaps = 34/223 (15%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L D PEYLTGE PGDYG+D GL + P F+ Y +E++H RWA
Sbjct: 95 WYGGDRPRWLGPVPYD---YPEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 151
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 187
ML A G ++PE + FG E VW+K G L G+ L+Y G IP +V
Sbjct: 152 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLG--IPGFRIAGGQGVVVI 209
Query: 188 VIAEIVLDL---------------------EDKLHPGGP-FDPLGLAKDPDQFALLKVKE 225
I + +L + D +PGGP FDPLGL+KDP F LKVKE
Sbjct: 210 AICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKE 269
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
IKNGRLAM A GF++QA VTG+GPV+NL +HLSDP NN+L+
Sbjct: 270 IKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILS 312
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 170 bits (430), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 139/261 (53%), Gaps = 46/261 (17%)
Query: 52 KKAAPPAKS--KPVAVSPVNEELAKWYGPDRRIFLPEGLLD-RSEIPEYLTGEVPGDYGY 108
KKAAP KS KP S +LAKWYG +RR +LP GLLD +++P Y+ G + GDYG+
Sbjct: 60 KKAAPVKKSSGKP---SQAGGDLAKWYGKNRRFYLPSGLLDPATDVPSYMDGTLAGDYGF 116
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
DP L + Y+A E+IHARWAML G +IPEA P VW +TG + L
Sbjct: 117 DPLKLGAD-GKINDYRAAEVIHARWAMLAIPGIVIPEALGI------PGGVWTETGKVFL 169
Query: 169 DG---------NTLNYFGKNIPINLVFAVIAEIVLDLE--------------------DK 199
DG N + + G I I L AV + D
Sbjct: 170 DGEAGRPEILQNPIIFAG--IQIALFAAVEGYRSGKVAPPEGFVPGKGKFSGSDFAGLDP 227
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
++PGGP D +A P+ A+LKVKEIKNGRLAM AMLG F+Q TGEGP N KH++
Sbjct: 228 INPGGPLDFFNVASTPEDLAILKVKEIKNGRLAMIAMLGVFVQGLTTGEGPAANWGKHVA 287
Query: 260 DPFANNLLTVISGNAERAPTL 280
DPF N +T+ + ER P L
Sbjct: 288 DPFGYNFVTISA--IERTPVL 306
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/220 (46%), Positives = 130/220 (59%), Gaps = 30/220 (13%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F+ +K+A +K VA S + WYGPDR +L E P YLTGE PGDYG+
Sbjct: 5 FTMRKSA---TTKKVASSG-----SPWYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGW 53
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 54 DTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIF 112
Query: 169 DGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLG 210
L+Y G + + A+ A V+ ++ D L+PGG FDPLG
Sbjct: 113 SEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 172
Query: 211 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
LA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 173 LADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 212
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/197 (51%), Positives = 120/197 (60%), Gaps = 23/197 (11%)
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
NE+L +YGPDR ++L G L + P YLTGE PGDYG+D GLS P+ F +Y+ EL
Sbjct: 40 NEKLGAFYGPDRGLWL--GPLSGT-TPAYLTGEFPGDYGWDSAGLSADPETFKRYRELEL 96
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVF 186
IHARWAMLGA G + PE K G E VWFK GA + L+Y G I +
Sbjct: 97 IHARWAMLGALGCVTPELLAKNGTPI-AEPVWFKAGAQIFQEGGLDYLGNAGLIHAQSIL 155
Query: 187 AVIAEIVLDLE----------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNG 229
A +A V+ + DKLHPGG FDPLGLA+DPD FA LKVKEIKNG
Sbjct: 156 ATLAVQVILMGAIEGYRVNGGPAGEGLDKLHPGGQFFDPLGLAEDPDAFAELKVKEIKNG 215
Query: 230 RLAMFAMLGFFLQAYVT 246
RLAMF+M GFF+QA VT
Sbjct: 216 RLAMFSMFGFFVQAIVT 232
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/255 (41%), Positives = 149/255 (58%), Gaps = 34/255 (13%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
KK +A SK A++ + + WYG +R +L D P+YLTGE+PGDYG+D
Sbjct: 89 KKNSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYD---YPKYLTGELPGDYGFDI 145
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GLS+ P F K+ +E++HARWAML + G ++PE + FGA E +W++ G L G
Sbjct: 146 AGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKG 205
Query: 171 NTLNYFGKNIP-INL-------VFAVIAEIVL------------DLE--------DKLHP 202
+TL+Y G IP ++L V A+ I++ LE D +P
Sbjct: 206 DTLDYLG--IPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYP 263
Query: 203 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG FDPL L+KD F LKVKEIKNGRLAM A LGF+ QA +TG+GPV+NL H++DP
Sbjct: 264 GGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADP 323
Query: 262 FANNLLTVISGNAER 276
F NN L++++ + R
Sbjct: 324 FHNNFLSLLNSSFSR 338
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/196 (48%), Positives = 119/196 (60%), Gaps = 22/196 (11%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR ++L G L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 50 WYGSDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 106
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 107 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQ 165
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 166 VVLMGAVEGYRIAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 225
Query: 237 LGFFLQAYVTGEGPVE 252
GFF+QA VTG P
Sbjct: 226 FGFFVQAIVTGGEPCR 241
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 129/223 (57%), Gaps = 34/223 (15%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG DR +L D PE+LTGE PGDYG+D GL + P F+ Y +E++H RWA
Sbjct: 94 WYGGDRPRWLGPVPYD---YPEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWA 150
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 187
ML A G +IPE + FG E VW+K G L G+TL+Y G IP ++
Sbjct: 151 MLAALGVVIPELLDLFGLVHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVI 208
Query: 188 VIAEIVLDL---------------------EDKLHPGGP-FDPLGLAKDPDQFALLKVKE 225
I + +L + D +PGG FDPLGL+KDP F LKVKE
Sbjct: 209 AICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKE 268
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
IKNGRLAM A LGF++QA VTG+GPV+NL +HLSDP NN+L+
Sbjct: 269 IKNGRLAMVAWLGFYIQAAVTGKGPVQNLVEHLSDPLHNNILS 311
>gi|116783114|gb|ABK22798.1| unknown [Picea sitchensis]
Length = 253
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 119/209 (56%), Gaps = 35/209 (16%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F A
Sbjct: 50 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETF-------------A 93
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 94 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 152
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 153 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 212
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 213 FGFFVQAIVTGKGPIENLFDHLADPTANN 241
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 110/253 (43%), Positives = 144/253 (56%), Gaps = 36/253 (14%)
Query: 48 LFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRS-EIPEYLTGEVPGDY 106
L +KK A SK A++ + + WYG +R P L S + P YL+GE+PGDY
Sbjct: 89 LEERKKLAVQQSSKFKALAQKARKESFWYGEER----PRWLGPISYQYPTYLSGELPGDY 144
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GL++ P F +Y +E++HARWAML A G +IPE + GA E VW++ G
Sbjct: 145 GFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGAFHFIEPVWWRVGYS 204
Query: 167 LLDGNTLNYFGKNIP--------INLVFAVIAEIVL------------DLE--------D 198
L G+TL+Y G IP LV A I++ LE D
Sbjct: 205 KLKGDTLDYLG--IPGLHFAGGQGVLVIAFCQAILMVGPEYARYCGIEALEPLGIYLPGD 262
Query: 199 KLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
+PGG FDPL L+KDP F LKVKEIKNGRLAM A LGF++QA +TG+GPVENL +H
Sbjct: 263 INYPGGILFDPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYIQAALTGKGPVENLVEH 322
Query: 258 LSDPFANNLLTVI 270
+SDP NNL + +
Sbjct: 323 ISDPLHNNLFSTL 335
>gi|169061|gb|AAA33655.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 194
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 115/183 (62%), Gaps = 19/183 (10%)
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
E PGDYG+D GLS P+ FSK + E+IH+RWAMLGA G + PE + G G EAVW
Sbjct: 1 EFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVW 59
Query: 161 FKTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHP 202
FK G+ + L+Y G + + V A V+ ++ D L+P
Sbjct: 60 FKAGSQIFSEGGLDYLGNPSLVHAQSILTVWATQVILMGAVEGYRIAGGPLGEVVDPLYP 119
Query: 203 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
GG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 120 GGSFDPLGLAEIPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPV 179
Query: 263 ANN 265
NN
Sbjct: 180 NNN 182
>gi|20218821|emb|CAC84495.1| putative chlorophyll A-B binding protein type I [Pinus pinaster]
Length = 195
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 115/181 (63%), Gaps = 19/181 (10%)
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE K G G EAVWFK
Sbjct: 4 PGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFK 62
Query: 163 TGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLHPGG 204
GA + L+Y G I + A+ A ++VL + D L+PGG
Sbjct: 63 AGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGG 122
Query: 205 PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFAN 264
FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL+DP AN
Sbjct: 123 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTAN 182
Query: 265 N 265
N
Sbjct: 183 N 183
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 131/223 (58%), Gaps = 34/223 (15%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYG R +L G L R + PE+L GE PGDYG+D GL + P F+ Y +E++H RWA
Sbjct: 90 WYGGARPRWL--GPL-RYDYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWA 146
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 187
ML A G ++PE + FG E VW+K G L G+TL+Y G IP ++
Sbjct: 147 MLAALGVVVPELLDLFGIVHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGIIVI 204
Query: 188 VIAEIVLDL---------------------EDKLHPGGP-FDPLGLAKDPDQFALLKVKE 225
I +++L + D +PGG FDPLGL+KDP F KVKE
Sbjct: 205 AICQVLLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLGLSKDPVAFEEFKVKE 264
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
IKNGRLAM A +GF++QA VTG+GPV+NLA+HLSDP NN+L+
Sbjct: 265 IKNGRLAMVAWIGFYIQAAVTGKGPVQNLAEHLSDPLHNNILS 307
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 166 bits (421), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 133/240 (55%), Gaps = 42/240 (17%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A+ A S +E +W GP +P E P +LTGE PGDYG+D GL + P
Sbjct: 92 ARQARTASSWYGDERPRWLGP-----VP------YEYPAHLTGEYPGDYGFDIAGLGRDP 140
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
F+ Y +E++H RWAML A G ++PE + FG E VW+K G L G+TL+Y G
Sbjct: 141 VAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVHFVEPVWWKVGYAKLQGDTLDYLG 200
Query: 178 KNIP-------INLVFAVIAEIVLDL---------------------EDKLHPGGP-FDP 208
IP ++ I + +L + D +PGG FDP
Sbjct: 201 --IPGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDP 258
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
LGL+KDP F LKVKEIKNGRLAM A LGF++QA VTG+GP++NL +HLSDP NN+L+
Sbjct: 259 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILS 318
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 127/221 (57%), Gaps = 32/221 (14%)
Query: 75 WYGPDRRIFLPEGLLDRS-EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYG DR P L S E P YLTGE+PGDYG+D GL + P KY +E++HARW
Sbjct: 105 WYGEDR----PRWLGPISYEYPSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARW 160
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-----IPINLVFAV 188
AML + G +IPE + GA E VW++ G L G+TL+Y G +V
Sbjct: 161 AMLASVGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIA 220
Query: 189 IAEIVL-------------DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEI 226
I + +L LE D +PGG FDPL L+ DP+ F LKVKEI
Sbjct: 221 ICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSNDPEAFEELKVKEI 280
Query: 227 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 267
KNGRLAM A LGF++QA +TG+GPV+NL H+SDPF NNLL
Sbjct: 281 KNGRLAMVAWLGFYVQAALTGKGPVQNLIDHISDPFHNNLL 321
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/279 (40%), Positives = 146/279 (52%), Gaps = 41/279 (14%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDR-R 81
P A+ S+ G S + KKK A S+ A + +KWYG +R R
Sbjct: 62 PFTAVKAIANSSLGESLRRRLE-----EKKKEAVENSSRFKAKAQEARNDSKWYGKERPR 116
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
F P + P YLTGE+PGDYG+D GL K F KY +E++HARWAML A G
Sbjct: 117 WFGPIPY----DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGA 172
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVL 194
+IPE + GA E VW++ G L G TL+Y G IP ++ I +++L
Sbjct: 173 LIPEVLDLTGAFHFAEPVWWRVGYSKLQGETLDYLG--IPGLHVAGSQGVIVIAICQVLL 230
Query: 195 -------------DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
LE D +PGG FDPL L++DP F LKVKEIKNGRLA
Sbjct: 231 MVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLA 290
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
M A LGF+ QA TG+GPV+NL H+SDP NNLL ++
Sbjct: 291 MVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLLAMLQ 329
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 105/248 (42%), Positives = 136/248 (54%), Gaps = 34/248 (13%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
K AA ++S A + + W+G DR +L D P++L G PGDYG+D
Sbjct: 76 KAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPYD---YPDHLQGSFPGDYGFDIA 132
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
GL K P F K+ +E++HARWAML A G +IPE KF E+VW++ G L+G+
Sbjct: 133 GLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVNFAESVWWRVGYAKLEGD 192
Query: 172 TLNYFGKNIP-------INLVFAVIAEIVL-------------DLE--------DKLHPG 203
TL+Y G IP ++ I + +L LE D +PG
Sbjct: 193 TLDYLG--IPGLHIVGAQGIIVIAICQFLLMVGPEYARYCGIEALEPLGIYLPGDINYPG 250
Query: 204 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
G FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA VT +GP+ENL HL DP
Sbjct: 251 GVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPL 310
Query: 263 ANNLLTVI 270
NN +T I
Sbjct: 311 HNNAVTSI 318
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 145/279 (51%), Gaps = 41/279 (14%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDR-R 81
P A+ S+ G S + KKK A S+ + + +KWYG +R R
Sbjct: 59 PFTAVKAIANSSIGVSLRRRLE-----EKKKEAVENSSRFKSKAQEARNDSKWYGKERPR 113
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
F P + P YLTGE+PGDYG+D GL K F KY +E++HARWAML A G
Sbjct: 114 WFGPIPY----DYPPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGA 169
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVL 194
+IPE F+ G E VW++ G L G TL Y G IP ++ I +++L
Sbjct: 170 LIPEVFDLTGTFHFAEPVWWRVGYSKLQGETLEYLG--IPGLHVAGSQGVIVIAICQVLL 227
Query: 195 -------------DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
LE D +PGG FDPL L++DP F LKVKEIKNGRLA
Sbjct: 228 MVGPEYARYCGIEALEPLGIYLPGDINYPGGTLFDPLNLSEDPVAFEDLKVKEIKNGRLA 287
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
M A LGF+ QA TG+GPV+NL H+SDP NNL+ ++
Sbjct: 288 MVAWLGFYAQAAFTGKGPVQNLVDHVSDPLHNNLIAMLQ 326
>gi|12582|emb|CAA48410.1| light harvesting chlorophyll a /b binding protein [Hedera helix]
Length = 193
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 116/182 (63%), Gaps = 20/182 (10%)
Query: 103 PGDYGYD-PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE + G G EAVWF
Sbjct: 1 PGDYGWDTSRGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWF 59
Query: 162 KTGALLLDGNTLNYFGKN--IPINLVFAVIAEIVL----------------DLEDKLHPG 203
K GA + L+Y G + + A+ A V+ ++ D L+PG
Sbjct: 60 KAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPG 119
Query: 204 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 263
G FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP
Sbjct: 120 GSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 179
Query: 264 NN 265
NN
Sbjct: 180 NN 181
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 113/190 (59%), Gaps = 25/190 (13%)
Query: 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
LTGE PGDYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 158 AVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE-------------------- 197
VWFK GA + L+Y G NLV A VL +
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGE 117
Query: 198 -DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 118 GNNLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLL 177
Query: 256 KHLSDPFANN 265
HL +P ANN
Sbjct: 178 DHLDNPVANN 187
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 107/248 (43%), Positives = 139/248 (56%), Gaps = 34/248 (13%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
K AA ++S A + + W+G DR +L D P++L G PGDYG+D
Sbjct: 76 KAAAENSRSAVDAARMRARDASVWFGQDRPKWLGPIPYD---YPDHLQGSFPGDYGFDIA 132
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
GL K P F K+ +E++HARWAML A G +IPE KF E+VW++ G L+G+
Sbjct: 133 GLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVKFAESVWWRVGYAKLEGD 192
Query: 172 TLNYFGKNIP-INLVFA------VIAEIVL-------------DLE--------DKLHPG 203
TL+Y G IP +++V A I + +L LE D +PG
Sbjct: 193 TLDYLG--IPGLHIVGAQGILVIAICQFLLMVGPEYARYCGIEALEPLGIYLPGDINYPG 250
Query: 204 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
G FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA VT +GP+ENL HL DP
Sbjct: 251 GVLFDPLGLSKDPATFEELKVKEIKNGRLAMVAWLGFYVQALVTKKGPLENLLDHLQDPL 310
Query: 263 ANNLLTVI 270
NN +T I
Sbjct: 311 HNNAVTSI 318
>gi|357157898|ref|XP_003577951.1| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Brachypodium distachyon]
Length = 318
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 123/203 (60%), Gaps = 27/203 (13%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ PE+L GE PGDYG+D GL + P F+ Y +E++H RWAML A G +IPE + FG
Sbjct: 113 DYPEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVIPELLDLFGI 172
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFG-KNIPIN-----LVFAVIAEIVL------------ 194
E VW+K G L G+TL+Y G + I +V A+ +++
Sbjct: 173 VHFVEPVWWKVGYAKLQGDTLDYLGITGLRIAGGQGVIVIAICQALLMVGPEYARYCGIE 232
Query: 195 DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 245
LE D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF+LQA V
Sbjct: 233 ALEPLGIYLPGDINYPGGALFDPLGLSKDPVGFEELKVKEIKNGRLAMVAWLGFYLQAAV 292
Query: 246 TGEGPVENLAKHLSDPFANNLLT 268
TG+GPV+NL +HLSDP NN+L+
Sbjct: 293 TGKGPVQNLVEHLSDPLHNNILS 315
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 133/240 (55%), Gaps = 42/240 (17%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
A+ A S +E +W GP +P E P +LTGE PGDYG+D GL + P
Sbjct: 92 ARQARTASSWYGDERPRWLGP-----VP------YEYPAHLTGEYPGDYGFDIAGLGRDP 140
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
F+ Y +E++H RWAML A G ++PE + F E VW+K G L G+TL+Y G
Sbjct: 141 VAFANYFNFEILHCRWAMLAALGVVVPELLDLFEVVHFVEPVWWKVGYAKLQGDTLDYLG 200
Query: 178 KNIP-------INLVFAVIAEIVL-------------DLE--------DKLHPGGP-FDP 208
IP ++ I + +L LE D +PGG FDP
Sbjct: 201 --IPGFRIAGGQGVIVIAICQALLMVGPEYARYCGIEALEPLGLYLPGDINYPGGALFDP 258
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
LGL+KDP F LKVKEIKNGRLAM A LGF++QA VTG+GP++NL +HLSDP NN+L+
Sbjct: 259 LGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNLVEHLSDPLHNNILS 318
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 121/205 (59%), Gaps = 31/205 (15%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
E P +LTGE PGDYG+D GL + P F+ Y +E++H RWAML A G ++PE + FG
Sbjct: 40 EYPAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGV 99
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLDL--------- 196
E VW+K G L G+TL+Y G IP ++ I + +L +
Sbjct: 100 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGFRIAGGQGVIVIAICQALLMVGPEYARYCG 157
Query: 197 ------------EDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 243
D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 158 IEALEPLGLYLPGDINYPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQA 217
Query: 244 YVTGEGPVENLAKHLSDPFANNLLT 268
VTG+GP++NL +HLSDP NN+L+
Sbjct: 218 AVTGKGPIQNLVEHLSDPLHNNILS 242
>gi|3386569|gb|AAC28490.1| photosystem II type II chlorophyll a/b binding protein [Sorghum
bicolor]
Length = 191
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/180 (50%), Positives = 115/180 (63%), Gaps = 19/180 (10%)
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GDYG+D GLS P+ F++ + E+IH+RWAMLGA G + PE K G G EAVWFK
Sbjct: 1 GDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVKFG-EAVWFKA 59
Query: 164 GALLLDGNTLNYFGK--NIPINLVFAVIA-EIVL---------------DLEDKLHPGGP 205
GA + L+Y G + + A+ A ++VL + DK++PGG
Sbjct: 60 GAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGPLGEGLDKVYPGGA 119
Query: 206 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
FDPLGLA DPD A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 120 FDPLGLADDPDTAAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANN 179
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/205 (45%), Positives = 122/205 (59%), Gaps = 31/205 (15%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ PE+L GE PGDYG+D GL + P F+ Y +E++H RWAMLGA G ++PE + FG
Sbjct: 1 DYPEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGI 60
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLDL--------- 196
E VW+K G L G+TL+Y G IP ++ I + +L +
Sbjct: 61 VHFVEPVWWKVGYAKLQGDTLDYLG--IPGLRIAGGQGIIVIAICQALLMVGPEYARYCG 118
Query: 197 ------------EDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 243
D +PGG FDPLGL+KDP F LKVKEIKNGRLAM A LGF++QA
Sbjct: 119 IEALEPLGIYLPGDLNYPGGALFDPLGLSKDPVAFEELKVKEIKNGRLAMVAWLGFYVQA 178
Query: 244 YVTGEGPVENLAKHLSDPFANNLLT 268
VTG+GPV+NL +HLSDP NN+L+
Sbjct: 179 AVTGKGPVQNLIEHLSDPLHNNILS 203
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/207 (45%), Positives = 119/207 (57%), Gaps = 28/207 (13%)
Query: 58 AKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP 117
++KPV+ + WYG DR +L E P YLTGE PGDYG+D GLS P
Sbjct: 38 GRAKPVSSG------SPWYGTDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADP 88
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA + L+Y G
Sbjct: 89 ETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLG 147
Query: 178 KN--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
+ + A+ A V+ ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 148 NPNLVHAQSILAIWASQVILMGAVEGYRIGGGPLGEVVDPLYPGGSFDPLGLADDPEAFA 207
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVT 246
LKVKEIKNGRLAMF+M GFF+QA VT
Sbjct: 208 ELKVKEIKNGRLAMFSMFGFFVQAIVT 234
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 115/188 (61%), Gaps = 23/188 (12%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G + P YLTGE PGDYG+D GLS P+ F +Y+ ELIHARW
Sbjct: 36 EWYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARW 93
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI----NLVFAVI 189
AMLGA G + P+ +K G EA+WFK GA + L+Y G N+ + N+V +
Sbjct: 94 AMLGALGCVTPKLLSKNGVQF-SEALWFKAGAQIFQEGGLDYLG-NLSLVHAQNIVATLA 151
Query: 190 AEIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
+++L + D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF
Sbjct: 152 CQVILMGLVEGYRVNGGPAGEGLDPLYPGKSFDPLGLADDPDTFAELKVKEIKNGRLAMF 211
Query: 235 AMLGFFLQ 242
+M GFF+Q
Sbjct: 212 SMFGFFVQ 219
>gi|116792703|gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/191 (49%), Positives = 116/191 (60%), Gaps = 13/191 (6%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR ++L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPDRVLYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G + PE + G G EAVWFK GA + L+Y G NLV A +L
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSP---NLVHAQSILAIL 174
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
+ L G + +A P L +VKE+KNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 175 ACQVILM--GAIEGYRVAGGP----LGEVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 228
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 229 ADHLADPVNNN 239
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 140/274 (51%), Gaps = 39/274 (14%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRI 82
P + A+ S+ G + L +KK A A A S V +E + WY R
Sbjct: 79 PFTLVKAIANSSIG----EQLQQRMLKTKKAAQEAAGEAREAQSNVRDE-SMWYREGRPK 133
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
+L D P++L GE PGDYG+D GLS+ P F +Y +E++HARWAML A G +
Sbjct: 134 WLGPIPYD---YPDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVV 190
Query: 143 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVLD 195
IPE ++FG E VW+K G L G+TL+Y G IP ++ +++L
Sbjct: 191 IPELLDRFGGVQFSEPVWWKVGYAKLQGDTLDYLG--IPGLHIAGAQGILVIAFCQVILM 248
Query: 196 L---------------------EDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 233
L D +PGG FDPLGL KD F LKVKE+KNGRLAM
Sbjct: 249 LGPEYARYCGIEALEPLGIFLPGDVNYPGGALFDPLGLTKDAAAFEDLKVKEMKNGRLAM 308
Query: 234 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 267
A LGF++QA VT +GP++NL L DP NL
Sbjct: 309 VAWLGFYVQALVTQKGPIDNLFDFLEDPLHQNLF 342
>gi|49473448|gb|AAT66413.1| chloroplast light-harvesting complex II, partial [Chlorella
pyrenoidosa]
Length = 179
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 92/176 (52%), Positives = 105/176 (59%), Gaps = 24/176 (13%)
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
GLS P F++Y+ E+IHARWAMLGA G I PE K G G EAVWFK GA +
Sbjct: 2 GLSADPQTFARYREIEVIHARWAMLGALGCITPELLAKNGIPFG-EAVWFKAGAQIFQDG 60
Query: 172 TLNYFGKN--IPINLVFAVIAEIVL--------------------DLEDKLHPGGPFDPL 209
LNY G + + A +A VL DL D L+PGG FDPL
Sbjct: 61 GLNYLGNESLVHAQSILATLAVQVLLMGAAESYRANGGAPGGFGEDL-DSLYPGGAFDPL 119
Query: 210 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GLA DPD A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ NL HLSDP NN
Sbjct: 120 GLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQAIVTGQGPIANLDAHLSDPTGNN 175
>gi|302144191|emb|CBI23318.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 159 bits (403), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 128/237 (54%), Gaps = 19/237 (8%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 7 AATASSSTGLRPTQFLGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 63
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 64 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 123
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKLHPGGPFDPLG 210
E VWFK GA + L+Y G NLV A VL + L +G
Sbjct: 124 VKVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVVL--------MG 172
Query: 211 LAKDPDQFAL--LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
L + L LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 173 LVEGYRINGLPGLKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 229
>gi|302144193|emb|CBI23320.3| unnamed protein product [Vitis vinifera]
Length = 236
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 128/237 (54%), Gaps = 19/237 (8%)
Query: 34 APGASNPSTFKPVALFSKKKAAPPAKSK---PVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + + + + P+ WYGPDR +L
Sbjct: 2 AATASSSTGLRPTQFVGQTRGSNANQLREVVPMGTGKFTMGNELWYGPDRVKYLGP---F 58
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
++ P YLTGE PGDYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 59 SAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKW 118
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKLHPGGPFDPLG 210
E VWFK GA + L+Y G NLV A VL + L +G
Sbjct: 119 VKVDFKEPVWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVVL--------MG 167
Query: 211 LAKDPDQFAL--LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
L + L LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 168 LVEGYRINGLPGLKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 224
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/212 (42%), Positives = 122/212 (57%), Gaps = 31/212 (14%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE PGD G+DPFGL+K P DF+K++ E+ H RWAMLG G ++PE F G
Sbjct: 158 AEAPTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGLVGCLVPEVFGNLG 217
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL-------------- 194
P W+ A + + + L+Y G + N+ F ++ ++L
Sbjct: 218 IAQLP--AWYDA-ATVANTSNLDYLGNPNLVHASNVSFIALSTLLLMGPVEAWRWNGALA 274
Query: 195 ----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
E +PGGPFDPL L P+ LK+KEIKNGRLAM M GF+ Q+YVTGEGP
Sbjct: 275 SEAKSAERTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMVGMFGFWAQSYVTGEGP 330
Query: 251 VENLAKHLSDPFANNLLTVI---SGNAERAPT 279
+ NLA HL+DP NNLL + + + E+ PT
Sbjct: 331 LANLAAHLADPAHNNLLNTVAMFAASGEKRPT 362
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/203 (44%), Positives = 118/203 (58%), Gaps = 32/203 (15%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE PGD G+DP GL+K P+DF+K + E+ H RWAMLG G ++PE F G
Sbjct: 367 AEAPAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGLVGCLVPEVFGNLG 426
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGK-------NIPINLVFAVIAEIVLDL-------- 196
P W++ GA+ G +L+Y G N+P L+F + L +
Sbjct: 427 IAQLP--AWYEAGAVANTG-SLDYLGNPNLVHASNVP--LIFFTTLLLFLPIEAWRWNGQ 481
Query: 197 --------EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
E +PGGPFDPL L P+ LK+KEIKNGRLAM M GF+ Q+YVTGE
Sbjct: 482 IAPEAKSAERTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMVGMFGFWAQSYVTGE 537
Query: 249 GPVENLAKHLSDPFANNLLTVIS 271
GP+ NLA HL+DP NNLL ++
Sbjct: 538 GPLANLAAHLADPAHNNLLNTVA 560
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/160 (40%), Positives = 86/160 (53%), Gaps = 31/160 (19%)
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK-------NIPINLVFAVI------- 189
PE F G P W++ GA+ G +L+Y G N+P+ ++
Sbjct: 1 PEVFGNLGIAQLP--AWYEAGAVANTG-SLDYLGNPNLVHASNVPLIFFTTLLLFLPIEA 57
Query: 190 ----AEIVLDLEDK---LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 242
+I D + K +PGGPFDPL L P+ LK+KEIKNGRLAM M GF+ Q
Sbjct: 58 WRWNGQIAPDAKSKEWTTYPGGPFDPLKLGASPE----LKLKEIKNGRLAMVGMFGFWAQ 113
Query: 243 AYVTGEGPVENLAKHLSDPFANNLLTVI---SGNAERAPT 279
+YVTGEGP+ NLA HL+DP NNLL + + + E+ PT
Sbjct: 114 SYVTGEGPLANLAAHLADPAHNNLLNTVAMFAASGEKRPT 153
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/186 (49%), Positives = 111/186 (59%), Gaps = 23/186 (12%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L G L E P YLTGE GDYG+D GLS P+ F +Y+ ELIHARWA
Sbjct: 42 WYGPDRPKYL--GWLS-GETPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWA 98
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIAE 191
MLGA G I PE G E VWFK GA + LNY G ++ ++ ++ +
Sbjct: 99 MLGALGCITPELLANNGTPIA-EPVWFKAGAQIFQDGGLNYLGNENLVHAQSIIVTLLVQ 157
Query: 192 IVL---------------DLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++L + DKL+PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+
Sbjct: 158 VILMGTVEGYRVNGGPAGEGLDKLYPGGDFFDPLGLADDPDTFAELKVKEIKNGRLAMFS 217
Query: 236 MLGFFL 241
M GFF+
Sbjct: 218 MFGFFV 223
>gi|357497757|ref|XP_003619167.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
gi|355494182|gb|AES75385.1| Chlorophyll a-b binding protein 3C-like protein [Medicago
truncatula]
Length = 229
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/209 (44%), Positives = 120/209 (57%), Gaps = 42/209 (20%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG++ GLS P+ F+K + E+IH+RWA
Sbjct: 33 WYGPDRVKYLGPFF---GEAPSYLTGEFPGDYGWNTAGLSADPETFAKNRELEVIHSRWA 89
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
M F++ WFK + + L+Y G + + A+ A +
Sbjct: 90 M-----------FDR----------WFKARSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 128
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
++L ++ D L+PGG FDPLGLA DP+ F LKVKEIKNGRLAMF+M
Sbjct: 129 VILMGAVEGYRIAGGPLGEVIDPLYPGGSFDPLGLADDPEAFVELKVKEIKNGRLAMFSM 188
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 189 FGFFVQAIVTGKGPLENLADHLADPVNNN 217
>gi|104763696|gb|ABF74606.1| chloroplast chlorophyll a/b-binding protein [Agave tequilana]
Length = 186
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/172 (50%), Positives = 109/172 (63%), Gaps = 19/172 (11%)
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK GA +
Sbjct: 4 GLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEG 62
Query: 172 TLNYFGK--NIPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAK 213
L+Y G + + A+ A ++VL ++ D L+PGG FDPLGLA
Sbjct: 63 GLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLAD 122
Query: 214 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 123 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|671737|emb|CAA52749.1| Chloropyll a/b binding protein [Amaranthus hypochondriacus]
Length = 186
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 109/175 (62%), Gaps = 19/175 (10%)
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G+ +
Sbjct: 1 DTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIF 59
Query: 169 DGNTLNYFGK--NIPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLG 210
L+Y G I + A+ A +++L ++ D L+PGG FDPLG
Sbjct: 60 SEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLG 119
Query: 211 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LA DPD FA LKVKEIKNG LAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 LADDPDAFAELKVKEIKNGMLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 174
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 109/181 (60%), Gaps = 20/181 (11%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGP+R +L G +P YLTGE PGDYG+D GLS P+ F KY+ ELIHAR+
Sbjct: 30 EWYGPNRAKWL--GPYSDGAVPSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARF 87
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN---LVFAVIA 190
AMLGA G + PE K+G E+VWF+ GA + L+Y G I+ + VI+
Sbjct: 88 AMLGALGCVTPELLAKYGGVSFGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAIVIS 147
Query: 191 EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
++VL + D L+PG FDPLGLA DPD FA LK+KEIKNGRLAMF+
Sbjct: 148 QVVLMGLVEGYRVNGGPAGEGLDSLYPGESFDPLGLADDPDTFAELKIKEIKNGRLAMFS 207
Query: 236 M 236
M
Sbjct: 208 M 208
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/223 (43%), Positives = 125/223 (56%), Gaps = 36/223 (16%)
Query: 73 AKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
+KWYGP R R+ P G E+L G + GD G+DP GLSK+ F+KYQ EL+HA
Sbjct: 175 SKWYGPSRPRLPGPLG------SAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHA 228
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFG-------KNIPIN 183
RWAMLG G ++PE G + G E VW+K GA L+ + TLN+ G I
Sbjct: 229 RWAMLGVVGCLVPELLALRGVDLG-EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIG 287
Query: 184 LVFAVIAEI-----------VLDLE--------DKLHP-GGPFDPLGLAKDPDQFALLKV 223
L+ A A + + LE D+ +P GGPFDPL A D D F V
Sbjct: 288 LIAACQAVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVEQAV 347
Query: 224 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNL 266
KE+KNGRLAM AMLGFF+QA VT GPV+N+ ++DP NN+
Sbjct: 348 KEVKNGRLAMLAMLGFFVQAAVTRVGPVQNVLDFVADPAHNNI 390
>gi|255539358|ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223551445|gb|EEF52931.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 329
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/248 (43%), Positives = 139/248 (56%), Gaps = 34/248 (13%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
KK A SK A++ + + WYG +R +L D P YLTGE+PGDYG+D
Sbjct: 84 KKVAVKESSKFQALTAKARKESLWYGEERPRWLGPIPYD---YPAYLTGELPGDYGFDVA 140
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN 171
GLSK F +Y +E++HARWAML A G + PE + GA E VW++ G L G+
Sbjct: 141 GLSKDSVAFQRYFNFEILHARWAMLAALGALAPEVLDLSGAFHFIEPVWWRVGYSKLKGD 200
Query: 172 TLNYFGKNIP--------INLVFAVIAEIVL------------DLE--------DKLHPG 203
TL+Y G IP LV A+ +++ LE D +PG
Sbjct: 201 TLDYLG--IPGLHFAGSQGVLVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPG 258
Query: 204 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
GP FDPL L+ D LKVKEIKNGRLAM A LGF+ QA +TG+GPV+NL +H+SDPF
Sbjct: 259 GPLFDPLNLSSDAVALEELKVKEIKNGRLAMVAWLGFYAQAALTGKGPVQNLVEHISDPF 318
Query: 263 ANNLLTVI 270
NNLL V+
Sbjct: 319 HNNLLCVL 326
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 107/183 (58%), Gaps = 25/183 (13%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P+ F+K +A E+IH RWAMLGA G I PE K+ E VWFK G
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 165 ALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE---------------------DKLHPG 203
A + L+Y G NLV A VL + + L+PG
Sbjct: 61 AQIFTEGGLDYLGNP---NLVHAQSILAVLGFQVVVMGLVEGFRINGLDGVGEGNDLYPG 117
Query: 204 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
G FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL +P
Sbjct: 118 GQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 177
Query: 263 ANN 265
ANN
Sbjct: 178 ANN 180
>gi|459020|gb|AAA16605.1| light harvesting chlorophyll a/b binding protein of PSII, partial
[Euglena gracilis]
Length = 322
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 107/183 (58%), Gaps = 22/183 (12%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+P + L++WYGPDR +L G L ++P YLTGE+PGDYG+D GL P ++Y+
Sbjct: 143 APAADNLSQWYGPDRAKWL--GPL-TGQVPAYLTGELPGDYGWDTAGLGADPVTLARYRE 199
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN-- 183
E+IHARWAMLGA G + PE G G AVW+K GA + + LNY G I+
Sbjct: 200 AEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLGNPSLIHAQ 259
Query: 184 ---LVFAVIAEIVLDLE--------------DKLHPGGPFDPLGLAKDPDQFALLKVKEI 226
L F I+ +E D+L+PGGPFDPLGLA DPD FA LKVKE+
Sbjct: 260 SVVLTFLSTLAIMGAVEGYRYGGGWPLGDDLDRLYPGGPFDPLGLANDPDAFAELKVKEV 319
Query: 227 KNG 229
KNG
Sbjct: 320 KNG 322
>gi|225457685|ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic [Vitis vinifera]
gi|297745621|emb|CBI40786.3| unnamed protein product [Vitis vinifera]
Length = 331
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/277 (41%), Positives = 149/277 (53%), Gaps = 39/277 (14%)
Query: 23 PLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRI 82
P A+ S G S S + KKAA SK A++ + + WYG +R
Sbjct: 62 PFTAVKAIANSPLGESLQSRME-----ENKKAAVKNSSKFKALAEKAKNESLWYGEERPR 116
Query: 83 FLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFI 142
+L D P YLTGE+PGDYG+D GL K P F KY +E++HARWAML A G +
Sbjct: 117 WLGPIPYD---YPAYLTGELPGDYGFDIAGLGKDPVAFQKYFNFEILHARWAMLAALGAL 173
Query: 143 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEIVL- 194
+PE + GA E VW++ G L G+TL+Y G IP ++ I + +L
Sbjct: 174 LPELLDLLGAFHFVEPVWWRVGYSKLKGDTLDYLG--IPGFHFAGSQGVIVIAICQALLM 231
Query: 195 ------------DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAM 233
LE D +PGG FDPL L+KDP F LKVKEIKNGRLAM
Sbjct: 232 VGPEYARYCGIEALEPLGIYLPGDINYPGGALFDPLNLSKDPVAFEELKVKEIKNGRLAM 291
Query: 234 FAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
A LGF++QA TG+GPV+NL HL+DPF NNLL++
Sbjct: 292 VAWLGFYIQAAATGKGPVQNLLDHLADPFHNNLLSIF 328
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/190 (43%), Positives = 109/190 (57%), Gaps = 21/190 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL++ P++F++Y+ ELIH RWAML G +IPEA N
Sbjct: 55 PAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEALGL--GNW 112
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKLH 201
W T G Y G +P + ++A L D E + +
Sbjct: 113 VSAQQWAAT-----PGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEEPDHEKRKY 167
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSD 260
PGGPFDPLG AKDP + K+KE+KNGRLA+ A LGF +QA G GP+ENLA HLS+
Sbjct: 168 PGGPFDPLGFAKDPKKLEEYKLKELKNGRLALLAFLGFSVQAIAYPGTGPLENLASHLSN 227
Query: 261 PFANNLLTVI 270
P+ANN+ +I
Sbjct: 228 PWANNIANII 237
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 105/170 (61%), Gaps = 19/170 (11%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G
Sbjct: 7 GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNG 66
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL-------------- 194
G EAVWFK GA + L+Y G I + A+ A ++VL
Sbjct: 67 VKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPL 125
Query: 195 -DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 243
++ D ++PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA
Sbjct: 126 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQA 175
>gi|384251912|gb|EIE25389.1| putative chlorophyll a/b-binding protein [Coccomyxa subellipsoidea
C-169]
Length = 287
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 131/247 (53%), Gaps = 32/247 (12%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYD 109
S+ K A + K +A + + + WYG +R +L G L + P YL G PGDY YD
Sbjct: 46 SEYKRAEQQREKELAAA---RDESPWYGEERPKWL--GPLS-YDYPAYLRGGAPGDYAYD 99
Query: 110 PFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD 169
P L++ D F +Y +EL+HARWAMLGA G IPE G + EA W+ G L
Sbjct: 100 PLQLAQDQDKFDQYFEFELLHARWAMLGALGAGIPEILQYSGVSDFLEARWWAVGGAKLQ 159
Query: 170 GNTLNYFG---------KNIPINLVFAVI---------AEIVLDLE--------DKLHPG 203
G LNY G + I I + V+ A + LE DK +PG
Sbjct: 160 GEDLNYLGVSGLRIAGGQGIAIIAICQVLLMFGPEYARACGIEALEPLGLYLPGDKNYPG 219
Query: 204 GPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 263
G FDPLGL+KDP FA L+VKEIKNGRLA+ A +GF QA VT +GP+ +L +DP
Sbjct: 220 GLFDPLGLSKDPASFADLQVKEIKNGRLALVAWVGFAAQAAVTRKGPIADLLDFAADPVH 279
Query: 264 NNLLTVI 270
NN+ +
Sbjct: 280 NNIFAYL 286
>gi|302584050|gb|ADL57411.1| chloroplast LHCII type I chlorophyll a-b binding precursor protein
[Ipomoea nil]
Length = 179
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 107/166 (64%), Gaps = 19/166 (11%)
Query: 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG 177
+ F+K + E+IH+RWAMLGA G + PE ++ G G EAVWFK GA + L+Y G
Sbjct: 3 ETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGAQIFSEGGLDYLG 61
Query: 178 K--NIPINLVFAVIA-EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFA 219
I + A+ A ++VL ++ D L+PGG FDPLGLA DP+ FA
Sbjct: 62 NPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEITDPLYPGGSFDPLGLADDPEAFA 121
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 122 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 167
>gi|115831|sp|P15773.1|CB2_MALDO RecName: Full=Chlorophyll a-b binding protein AB10, chloroplastic;
AltName: Full=LHCII type I CAB-AB10; Short=LHCP; Flags:
Precursor
gi|19541|emb|CAA35690.1| unnamed protein product [Malus x domestica]
Length = 268
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 136/261 (52%), Gaps = 37/261 (14%)
Query: 31 RTSAPGASNP--STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL 88
+ + P NP ST A F+ K A AKSK S + K+ GP
Sbjct: 19 KIAKPSKLNPISSTLIVTAGFTMLKHA--AKSK--VSSSTCDRRVKYLGPFS-------- 66
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
E P YLTGE PGDYG+D GLS P+ F+K + E+IH+R AM A G I PE +
Sbjct: 67 ---GEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLS 123
Query: 149 KFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIAEIVL------------ 194
G G EAVWFK GA + L+Y G + + A+ V+
Sbjct: 124 VMGQGFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRIAR 182
Query: 195 ----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
++ D L+PG FD LGLA+D + FA LKVKE+KNGRLAMF+M GFF+QA V+ +
Sbjct: 183 GPLGEVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDR 241
Query: 251 VENLAKHLSDPFANNLLTVIS 271
+ENLA HL NN L+ ++
Sbjct: 242 LENLADHLGWTVNNNALSNVT 262
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 123/213 (57%), Gaps = 21/213 (9%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 122
+V+P + +YGP+R ++ +G ++PEYL GE PGDYG D F L + P++++K
Sbjct: 2 SVAPSQDTRTAYYGPNRPLW--KGPFTSPKDVPEYLKGEYPGDYGCDIFKLVRLPENYAK 59
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
++ EL++ RWAMLG G ++PE N G E VWFKTGA + ++Y G I
Sbjct: 60 LRSQELMNGRWAMLGITGCLVPELINS-NPTPGFEPVWFKTGAQIFSEAGIDYLGVPGFI 118
Query: 183 N---LVFAVIAEIVL-------------DLEDKLHPGGP-FDPLGLAKDPDQFALLKVKE 225
N LV ++ + +L + D +PGG FDPLG + DP+ FA LKVKE
Sbjct: 119 NAHSLVAVIVVQALLMGVAEYARIKLSPEGNDAFYPGGKAFDPLGFSSDPESFAELKVKE 178
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
IKNGRLAM AM G F Q VTG P++NL L
Sbjct: 179 IKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDFL 211
>gi|157987283|gb|ABW07803.1| chlorophyll A-B binding protein [Solenostemon scutellarioides]
Length = 170
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 80/167 (47%), Positives = 105/167 (62%), Gaps = 19/167 (11%)
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+D GLS P+ F++ + E+IH+RWAMLGA G + PE +K G G EAVWFK G+
Sbjct: 1 GWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQ 59
Query: 167 LLDGNTLNYFGK--NIPINLVFAVIAEIVLDLE----------------DKLHPGGPFDP 208
+ L+Y G I + A+ A V+ + DK++PGG FDP
Sbjct: 60 IFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKVYPGGSFDP 119
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
LGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL+
Sbjct: 120 LGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLS 166
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 106/191 (55%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K + G Y G+ +P + ++A L D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKK 167
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
Query: 260 DPFANNLLTVI 270
DP+ NN+ VI
Sbjct: 228 DPWHNNIGDVI 238
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 109/204 (53%), Gaps = 21/204 (10%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
R+ + L P YL G PGD+G+DP GL + PD+ +++ ELIH RWAML G
Sbjct: 44 RVSMSAEWLPGQPRPAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPG 103
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIAEI- 192
+IPEA N W T G Y G +P I + F IA +
Sbjct: 104 CLIPEALGL--GNWVEAQQWAAT-----PGGQATYLGTPVPWGTLPVIIAIEFVAIAFVE 156
Query: 193 -----VLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT- 246
V E + +PGG FDPLG +KDP +F K+KE+KNGRLA+ A LGF QA
Sbjct: 157 SRRIGVPSAEKRKYPGGAFDPLGFSKDPKKFEEFKLKEVKNGRLALLAFLGFCAQAAAYP 216
Query: 247 GEGPVENLAKHLSDPFANNLLTVI 270
G GP++NLA HL+DP+ NN+ +I
Sbjct: 217 GTGPLQNLATHLADPWHNNIANII 240
>gi|238858956|dbj|BAH70299.1| chlorophyll a/b binding protein [Vicia cinerea]
Length = 266
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/256 (38%), Positives = 128/256 (50%), Gaps = 54/256 (21%)
Query: 54 AAPPAKSKPVAVSPVNEEL--------------------AKWYGPDRRIFLPEGLLDRSE 93
++P KPV ++P ++EL + WYGPDR +L E
Sbjct: 9 SSPTLAGKPVKLTPSSQELGASRFTTRKSATTKKVASSGSPWYGPDRVKYLGP---FSGE 65
Query: 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL------IHARWAMLGAAGFIIPEAF 147
P YLTGE PGDYG+D GLS P+ F+K + W + + F
Sbjct: 66 PPSYLTGEFPGDYGWDTAGLSADPETFAKNVSLRSSTPDGPCWVPWD-VSSQSFCPVTVL 124
Query: 148 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI--PINLVFAVIAEIVL----------- 194
N CG FK G+ + L+Y G + A+ A V+
Sbjct: 125 NSVKL-CG-----FKAGSQIFSEGGLDYLGNPSLGSRQSILAIWATQVILMGAVEGYRIA 178
Query: 195 -----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
++ D L+PGG FDPLGLA+DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+G
Sbjct: 179 GGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 238
Query: 250 PVENLAKHLSDPFANN 265
P+ENLA HLSDP NN
Sbjct: 239 PLENLADHLSDPVNNN 254
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 106/191 (55%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 56 PPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K + G Y G+ +P + ++A L D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKK 167
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 168 YPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
Query: 260 DPFANNLLTVI 270
DP+ NN+ VI
Sbjct: 228 DPWHNNIGDVI 238
>gi|297744047|emb|CBI37017.3| unnamed protein product [Vitis vinifera]
Length = 183
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 106/191 (55%), Gaps = 38/191 (19%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 19 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 75
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G + PE ++ G G EAVWFK ++A ++
Sbjct: 76 MLGALGCVFPELLSRNGVKFG-EAVWFKAA--------------------IWACQVILMG 114
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
+E GGP L +VKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 115 AVEGYRIGGGP--------------LGEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 160
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 161 ADHLADPVNNN 171
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 108/192 (56%), Gaps = 25/192 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+D GL + P + +Y+ ELIH RWAML G I+PEA
Sbjct: 56 PSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGL----- 110
Query: 155 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K + G Y G+ +P + ++A L D E K
Sbjct: 111 ---GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKK 167
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ--AYVTGEGPVENLAKHL 258
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A++GF +Q AY+ G GP+ENLA HL
Sbjct: 168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYL-GTGPLENLATHL 226
Query: 259 SDPFANNLLTVI 270
+DP+ NN+ VI
Sbjct: 227 ADPWHNNIGDVI 238
>gi|147860827|emb|CAN83151.1| hypothetical protein VITISV_031291 [Vitis vinifera]
Length = 244
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/257 (38%), Positives = 123/257 (47%), Gaps = 53/257 (20%)
Query: 34 APGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLD 90
A AS+ + +P + + A P P+ WYGPDR +L
Sbjct: 4 AATASSSTVLRPTPFLGQTRGANSNPLRDVVPMGTGKYTMGNELWYGPDRVKYL------ 57
Query: 91 RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
PF ++ P F++ +A E+IH RWAMLGA G I PE K+
Sbjct: 58 ------------------GPFS-AQTPFAFARNRALEVIHGRWAMLGALGCITPEVLEKW 98
Query: 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE------------- 197
E +WFK GA + L+Y G NLV A VL +
Sbjct: 99 LRVDFKEPIWFKAGAQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVVLMGLVEGFRIN 155
Query: 198 --------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+ L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+
Sbjct: 156 GLPGVGDGNNLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 215
Query: 249 GPVENLAKHLSDPFANN 265
GP+ENL HL +P ANN
Sbjct: 216 GPLENLLDHLDNPVANN 232
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/255 (39%), Positives = 127/255 (49%), Gaps = 34/255 (13%)
Query: 37 ASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIFL-PEGLLDRS 92
++ S F P + K++ P + N WYGPDR +L P +
Sbjct: 6 TNSSSVFCPTTFLGQTKSSSFNPLRDVVSLGSHKYNMGNYLWYGPDRVKYLGPFSV---- 61
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDD-FSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ P Y TGE PGDYG+D GLS P+ F+K A E+I+ RWAMLGA G I PE K+
Sbjct: 62 QTPSYPTGEFPGDYGWDTAGLSADPEKAFAKNIALEVIYGRWAMLGAFGCITPEVLQKWV 121
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE-------------- 197
E VWFK G+ + L+Y G NLV A VL +
Sbjct: 122 RVDFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVILMGLVEGFRINR 178
Query: 198 -------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
+ L+PGG FD L L D F LKVKEIKNG LAMF+M GFF+QA VTG+
Sbjct: 179 FDGVGEGNDLYPGGKYFDLLSLVDDQVTFVELKVKEIKNGMLAMFSMFGFFVQAIVTGKD 238
Query: 250 PVENLAKHLSDPFAN 264
P+E+L HL + AN
Sbjct: 239 PLESLLDHLDNFVAN 253
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/213 (41%), Positives = 122/213 (57%), Gaps = 21/213 (9%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDR-SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSK 122
+V+P + A +YGP+R ++ +G + ++PEYL GE PGDYG D F L++ P ++++
Sbjct: 14 SVAPDQDARAPYYGPNRPLW--KGPFTKPKDVPEYLKGEYPGDYGCDIFKLARLPANYAR 71
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
+ EL++ RWAMLG G + PE N + G E VWF TGA + ++Y G I
Sbjct: 72 LRTQELMNGRWAMLGITGCLTPELINS-NSTPGFEPVWFNTGAQIFSDAGIDYLGVPGFI 130
Query: 183 NL--VFAVIA--------------EIVLDLEDKLHPGG-PFDPLGLAKDPDQFALLKVKE 225
N +FAVI + V + D +PGG FDPLG + DP+ A LKVKE
Sbjct: 131 NAHSLFAVIVVQALLMGLAEYARIKFVPEGADPFYPGGKTFDPLGFSSDPEILAELKVKE 190
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
IKNGRLAM AM G F Q VTG P++NL L
Sbjct: 191 IKNGRLAMMAMAGLFAQGAVTGVSPLQNLHDWL 223
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 103/191 (53%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 57 PAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGL--GNW 114
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL--------------DLEDKL 200
W + G Y G +P F +I I DLE +
Sbjct: 115 VEAQKW-----AAIPGGQATYLGVPVPWGY-FPIILSIFFLKMAFAESQRNGEPDLEKRK 168
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLS 259
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HLS
Sbjct: 169 YPGGAFDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLS 228
Query: 260 DPFANNLLTVI 270
DP+ N+ +I
Sbjct: 229 DPWHKNIAEII 239
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 107/191 (56%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P++ +Y+ ELIH RWAML G ++PEA +G
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K L G Y G +P + ++A L D E K
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKK 166
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 167 YPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 226
Query: 260 DPFANNLLTVI 270
DP+ N+ ++
Sbjct: 227 DPWHKNIGDIV 237
>gi|454250|emb|CAA82853.1| light-harvesting chlorophyll a/b binding protein [Trifolium repens]
Length = 167
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 96/156 (61%), Gaps = 19/156 (12%)
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLV 185
+IH+RWAMLGA G PE K G G EAVWFK GA + L+Y G I +
Sbjct: 1 VIHSRWAMLGALGCTFPEILEKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSI 59
Query: 186 FAVIAEIVLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
A+ A V+ + D L+PGG FDPLGLA DPD FA LKVKE+KNG
Sbjct: 60 LAIWATQVVLMGFVEGYRIGGGPLGEGLDPLYPGGAFDPLGLADDPDAFAELKVKELKNG 119
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
RLAMF+M GFF+QA VTG+GPV+NL HL+DP ANN
Sbjct: 120 RLAMFSMFGFFVQAIVTGKGPVQNLYDHLADPVANN 155
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 113/211 (53%), Gaps = 32/211 (15%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL-SKKPDDFSKYQAYELIHARWA 134
YGP RR FLP+G PE+L G + GD G+DP GL S P D +Y+ EL+H RWA
Sbjct: 176 YGPTRRKFLPDGF--GYPFPEHLDGTLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWA 233
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN--TLNYFGK---NIPINLVFAVI 189
MLG G +PEA +FG E VW+K GA L+ L+Y G +I + AVI
Sbjct: 234 MLGVVGAAVPEALARFGGLELGEPVWWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVI 293
Query: 190 AEIVLDLE-----------------------DKLHPGG-PFDPLGLAKDPDQFALLKVKE 225
A L L D+ +PGG PFDP G++ D F KV E
Sbjct: 294 AACQLVLMGGPEYARKVGIDSLVPVGVYLPGDRDYPGGAPFDPFGVSADAAVFERQKVAE 353
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 256
+K+GRLAM AMLG F QA+ TG GPVENL +
Sbjct: 354 MKHGRLAMVAMLGCFAQAWATGVGPVENLTE 384
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 111/205 (54%), Gaps = 23/205 (11%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
RI + + P YL G PGD+G+DP GL + P++ +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL----- 194
++PEA +G W K + G Y G +P + ++A L
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 195 --------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYV 245
D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAY 212
Query: 246 TGEGPVENLAKHLSDPFANNLLTVI 270
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 213 PGTGPLENLATHLADPWHNNIGDIV 237
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 108/205 (52%), Gaps = 23/205 (11%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
R+ + L P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G
Sbjct: 41 RVTMSADWLPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 100
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA--------- 190
+IPEA W K G Y G+ +P + V+A
Sbjct: 101 ILIPEALGL--------GNWVKAQEWAAAPGGQATYLGQPVPWGTLPTVLAIEFVAIAFV 152
Query: 191 ----EIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYV 245
+ D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEKDPEKKKYPGGAFDPLGFSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAY 212
Query: 246 TGEGPVENLAKHLSDPFANNLLTVI 270
G GP+ENLA HL+DP+ NN+ +I
Sbjct: 213 PGTGPLENLATHLADPWHNNIGDII 237
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 106/191 (55%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K L G Y G +P + ++A L D E K
Sbjct: 112 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKK 166
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 167 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 226
Query: 260 DPFANNLLTVI 270
DP+ NN+ ++
Sbjct: 227 DPWHNNIGDIV 237
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 110/205 (53%), Gaps = 23/205 (11%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
RI + + P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL----- 194
++PEA +G W K L G Y G +P + ++A L
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 195 --------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYV 245
D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAY 212
Query: 246 TGEGPVENLAKHLSDPFANNLLTVI 270
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 213 PGTGPLENLATHLADPWHNNIGDIV 237
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 115/219 (52%), Gaps = 23/219 (10%)
Query: 66 SPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
SP + + + +G R+ + + P +L G PGD+G+DP L P++ +Y+
Sbjct: 29 SPTSSLVGRRHG--SRVSMSAEWMPGQPRPPHLDGSAPGDFGFDPLRLGVIPENLERYKE 86
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV 185
ELIH RWAML G +IPEA N W + G+ YFG +P +
Sbjct: 87 SELIHCRWAMLAVPGMLIPEALGL--GNWVEAQKW-----AAIPGSQATYFGVPVPWGYL 139
Query: 186 FAVIAEIVL-------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLA 232
V+A L D E + +PGG FDPLG +KDP +F KVKEIKNGRLA
Sbjct: 140 PIVLAVEFLAIAFVESQRNGEPDPEKRKYPGGAFDPLGFSKDPVKFKEYKVKEIKNGRLA 199
Query: 233 MFAMLGFFLQAYVT-GEGPVENLAKHLSDPFANNLLTVI 270
+ A +GF +QA G GP+ENLA HLSDP+ N+ +I
Sbjct: 200 LLAFVGFCVQASANPGTGPLENLATHLSDPWHRNIAEII 238
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 108/204 (52%), Gaps = 21/204 (10%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
R+ + + + P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G
Sbjct: 43 RVSMSDEWMPGQPRPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPG 102
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL------ 194
+IPEA N W + GN Y G +P + ++A L
Sbjct: 103 VLIPEALGL--GNWVEAQKW-----AAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVE 155
Query: 195 -------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT- 246
D E + +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA
Sbjct: 156 SQRNGEPDPEKRKYPGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANP 215
Query: 247 GEGPVENLAKHLSDPFANNLLTVI 270
G GP+ENLA HLSDP+ N+ +I
Sbjct: 216 GTGPLENLATHLSDPWHKNIAEII 239
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 103/190 (54%), Gaps = 21/190 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 57 PPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGL--GNW 114
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKLH 201
W + GN Y G +P + ++A L D E + +
Sbjct: 115 VEAQKW-----AAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQRNGEPDPEKRKY 169
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSD 260
PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HLSD
Sbjct: 170 PGGAFDPLGFSKDPAKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSD 229
Query: 261 PFANNLLTVI 270
P+ N+ +I
Sbjct: 230 PWHKNIAEII 239
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 139 bits (351), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 104/185 (56%), Gaps = 11/185 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQ 114
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA--------EIVLDLEDKLHPGGPF 206
E G GN + + N+P L +A + D E K +PGG F
Sbjct: 115 AQEWAAIPGGQATYLGNPVPW--GNLPTILAIEFLAIAFVEHQRSMEKDTEKKKYPGGAF 172
Query: 207 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANN 265
DPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ NN
Sbjct: 173 DPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNN 232
Query: 266 LLTVI 270
+ VI
Sbjct: 233 IGDVI 237
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 107/191 (56%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P++ +++ ELIH RWAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIP-------INLVFAVIA------EIVLDLEDKL 200
W K + G Y G+ +P + + F IA + D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKK 168
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP++ KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 169 YPGGAFDPLGYSKDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 228
Query: 260 DPFANNLLTVI 270
DP+ NN+ +I
Sbjct: 229 DPWHNNIGDII 239
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 109/192 (56%), Gaps = 25/192 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 109
Query: 155 GPEAVWFKTG--ALLLDGNTLNYFGKNIP-------INLVFAVIA------EIVLDLEDK 199
W K A L DG Y G +P + + F IA + D E K
Sbjct: 110 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKK 165
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 258
+PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 166 KYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHL 225
Query: 259 SDPFANNLLTVI 270
+DP+ NN+ ++
Sbjct: 226 ADPWHNNIGDIV 237
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 104/191 (54%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 109
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K L G Y G +P + V+A L D E K
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSMEKDPEKKK 166
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 167 YPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 226
Query: 260 DPFANNLLTVI 270
DP+ NN+ V+
Sbjct: 227 DPWHNNIGNVL 237
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/191 (41%), Positives = 104/191 (54%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 55 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 109
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K L G Y G +P + V+A L D E K
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQRSMEKDPEKKK 166
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 167 YPGGAFDPLGYSKDPKKFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 226
Query: 260 DPFANNLLTVI 270
DP+ NN+ V+
Sbjct: 227 DPWHNNIGNVL 237
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 107/193 (55%), Gaps = 25/193 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 80 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 134
Query: 155 GPEAVWFKTG--ALLLDGNTLNYFGKNIP-------INLVFAVIA------EIVLDLEDK 199
W K A L DG Y G +P + + F IA + D E K
Sbjct: 135 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKK 190
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 258
+PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 191 KYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHL 250
Query: 259 SDPFANNLLTVIS 271
+DP+ N T S
Sbjct: 251 ADPWHNTSATSSS 263
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 108/204 (52%), Gaps = 21/204 (10%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
R+ + + P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G
Sbjct: 40 RVTMSANWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPG 99
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFAVIA--- 190
++PEA N W T G Y G+ +P + + F IA
Sbjct: 100 ILVPEALGL--GNWVKAQEWAAT-----PGGQATYLGQPVPWGTLPIILAIEFVAIAFVE 152
Query: 191 ---EIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT- 246
+ D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +G +Q
Sbjct: 153 HQRSMEKDTEKKKYPGGAFDPLGYSKDPQKFEEYKVKEIKNGRLALLAFVGICVQQTAYP 212
Query: 247 GEGPVENLAKHLSDPFANNLLTVI 270
G GP+ENLA HL+DP+ NN+ V+
Sbjct: 213 GTGPLENLATHLADPWHNNIGDVL 236
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 105/191 (54%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIP---------INLVFAVIAE----IVLDLEDKL 200
W K + G Y G +P I V AE + D E K
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEHQRTMEKDPEKKK 167
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL+
Sbjct: 168 YPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLA 227
Query: 260 DPFANNLLTVI 270
DP+ NN+ +I
Sbjct: 228 DPWHNNIGDII 238
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/187 (42%), Positives = 104/187 (55%), Gaps = 23/187 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 63
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K L G Y G +P + ++A L D E K
Sbjct: 64 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKK 118
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 119 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 178
Query: 260 DPFANNL 266
DP+ NN+
Sbjct: 179 DPWHNNI 185
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 105/191 (54%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIP---------INLVFAVIAE----IVLDLEDKL 200
W K + G Y G +P I V AE + D E K
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKK 167
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL+
Sbjct: 168 YPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLA 227
Query: 260 DPFANNLLTVI 270
DP+ NN+ +I
Sbjct: 228 DPWHNNIGDII 238
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 105/191 (54%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 56 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIP---------INLVFAVIAE----IVLDLEDKL 200
W K + G Y G +P I V AE + D E K
Sbjct: 111 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKK 167
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL+
Sbjct: 168 YPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLA 227
Query: 260 DPFANNLLTVI 270
DP+ NN+ +I
Sbjct: 228 DPWHNNIGDII 238
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/192 (41%), Positives = 109/192 (56%), Gaps = 25/192 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 111
Query: 155 GPEAVWFKTG--ALLLDGNTLNYFGKNIP-------INLVFAVIA------EIVLDLEDK 199
W K A L DG YFG +P + + F IA + D E K
Sbjct: 112 ---GNWVKAQEWAALPDGQA-TYFGVPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKK 167
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 258
+PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENL HL
Sbjct: 168 KYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLGAHL 227
Query: 259 SDPFANNLLTVI 270
+DP+ NN+ ++
Sbjct: 228 ADPWHNNIGDIV 239
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 124/228 (54%), Gaps = 36/228 (15%)
Query: 73 AKWYGPDR-RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHA 131
+KWYG R R+ P G ++L GE GD G+DP L K P F++++ EL+HA
Sbjct: 53 SKWYGASRPRLPGPLG------GAQHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHA 106
Query: 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFG-------KNIPIN 183
RWAMLG G ++PE G G E VW+K GA L+ + TLN+ G I
Sbjct: 107 RWAMLGFVGCMVPELLALRGVELG-EPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIG 165
Query: 184 LVFAVIAEI-----------VLDLE--------DKLHP-GGPFDPLGLAKDPDQFALLKV 223
L+ A A + + LE D+ +P GGPFDPL A D D F V
Sbjct: 166 LIAACQAVLMGGPEYARYVGIRSLEPVGVFLPGDQNYPGGGPFDPLNYAADADGFVDQAV 225
Query: 224 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
+EIKNGRLAM AMLG F+QA VT +GPV+N+ + +SDP N+ T ++
Sbjct: 226 REIKNGRLAMVAMLGLFVQAAVTKKGPVQNVMEFVSDPAGENIFTNVA 273
>gi|296085004|emb|CBI28419.3| unnamed protein product [Vitis vinifera]
Length = 172
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/192 (44%), Positives = 106/192 (55%), Gaps = 45/192 (23%)
Query: 75 WYGPDRRIFLPEGLLDRSE-IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
WYGPDR P+ L SE P YLTGE PGDYG+D GLS P+ F+K + E+IH RW
Sbjct: 13 WYGPDR----PKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRW 68
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV 193
AMLGA G + PE +K G FG+ + I ++A ++V
Sbjct: 69 AMLGALGCVFPEILSKNGVK----------------------FGEAVCILAIWA--CQVV 104
Query: 194 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 253
L +G + LKVKEIKNGRLAMF+M GFF+QA VTG+GP+EN
Sbjct: 105 L--------------MGFVEGYR--VELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 148
Query: 254 LAKHLSDPFANN 265
L HL+DP ANN
Sbjct: 149 LVDHLADPVANN 160
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 104/190 (54%), Gaps = 21/190 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP L P++ +Y+ ELIH RWAML G +IPEA N
Sbjct: 17 PPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGL--GNW 74
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKLH 201
W + G+ YFG +P + V+A L D E + +
Sbjct: 75 VEAQKW-----AAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQRNGEPDPEKRKY 129
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSD 260
PGG FDPLG +KDP +F KVKEIKNGRLA+ A +GF +QA G GP+ENLA HLSD
Sbjct: 130 PGGAFDPLGFSKDPVKFKEYKVKEIKNGRLALLAFVGFCVQASANPGTGPLENLATHLSD 189
Query: 261 PFANNLLTVI 270
P+ N+ +I
Sbjct: 190 PWHRNIAEII 199
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 105/191 (54%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 106
Query: 155 GPEAVWFKTGALLLD-GNTLNYFGKNIP---------INLVFAVIAE----IVLDLEDKL 200
W + + G Y G +P I V AE + D E K
Sbjct: 107 ---GNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKK 163
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HLS
Sbjct: 164 YPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLS 223
Query: 260 DPFANNLLTVI 270
DP+ NN+ +I
Sbjct: 224 DPWHNNIGDII 234
>gi|28630973|gb|AAO45885.1| chlorophyll a/b-binding protein precursor [Citrus limon]
Length = 216
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/173 (47%), Positives = 99/173 (57%), Gaps = 22/173 (12%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRVKYLGP---FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK GA + L+Y G I + A+ A +
Sbjct: 105 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQ 163
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
+VL ++ D L+PGG FDPLGLA DP FA LKVKEIKNG
Sbjct: 164 VVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPKAFAELKVKEIKNG 216
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 104/185 (56%), Gaps = 11/185 (5%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +Y+ ELIH RWAML G ++PEA
Sbjct: 12 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWVQ 71
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA--------EIVLDLEDKLHPGGPF 206
E G GN + + N+P L +A + D E K +PGG F
Sbjct: 72 AQEWAAIPGGQATYLGNPVPW--GNLPTILAIEFLAIAFVEHQRSMEKDTEKKKYPGGAF 129
Query: 207 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANN 265
DPLG +KDP +F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ NN
Sbjct: 130 DPLGYSKDPVKFEEYKVKEIKNGRLAILAFVGFCVQQSAYPGTGPLENLASHLADPWHNN 189
Query: 266 LLTVI 270
+ VI
Sbjct: 190 IGDVI 194
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 103/191 (53%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 57 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K + G Y G +P + ++A L D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMEKDPEKKK 168
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP F KVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 169 YPGGAFDPLGYSKDPKTFHEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLA 228
Query: 260 DPFANNLLTVI 270
DP+ NN+ VI
Sbjct: 229 DPWHNNIGNVI 239
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 108/286 (37%), Positives = 144/286 (50%), Gaps = 59/286 (20%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AVR S S PS+ + S +K + A S PV + N +L W+ + +
Sbjct: 16 AEAVRQSFGARSLPSS-----IGSSRKGSFVVKAASSPPVKQNGANRQL--WFASKQSL- 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLG 137
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLG
Sbjct: 68 ------------SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLG 114
Query: 138 AAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAE-- 191
AAG I PE K G A+ WF+TG + G T NY+ N + + F AE
Sbjct: 115 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTLFVMEMAFMGFAEHR 173
Query: 192 --------------IVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNG 229
L LE L +PGGP F+PLG KD LK+KE+KNG
Sbjct: 174 RFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNG 233
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAE 275
RLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT + GN E
Sbjct: 234 RLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLKGNKE 279
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 138/278 (49%), Gaps = 55/278 (19%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ AVR S S PS+ S+K + + PV N +L W+ + +
Sbjct: 298 AEAVRQSFGARSLPSSIGS----SRKGSFVVKAAAPVKKGGANRQL--WFASKQSL---- 347
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAG 140
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG
Sbjct: 348 ---------SYLDGSLPGDFGFDPLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAAG 397
Query: 141 FIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAE----- 191
I PE K G A+ WF+TG + G T NY+ N + + F AE
Sbjct: 398 AIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTLFVMEMAFMGFAEHRRLQ 456
Query: 192 -----------IVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
L LE L +PGGP F+PLG KD LK+KE+KNGRLA
Sbjct: 457 DWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLA 516
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
M A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 517 MLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 554
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 113/217 (52%), Gaps = 36/217 (16%)
Query: 80 RRIFLPEGLLDRSEIPEYL----TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
R+ +LP S+IP +L + G++G+DP GL K P + YQ ELIH R AM
Sbjct: 21 RQSWLPG-----SQIPAHLDTPSAQALAGNFGFDPLGLGKDPVALAWYQQAELIHCRTAM 75
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI--- 192
G AG +IP K GA PE W+ G + ++ N+ +G + + L E+
Sbjct: 76 TGVAGILIPGLLTKAGALNVPE--WYDAGKVAIE-NSFAPWGTLLAVQLFLCGFVEVKRW 132
Query: 193 --------------VLDLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 231
L E L +PGGPFDPLGL+K+ D++A K+KE+KNGRL
Sbjct: 133 QDIRKPGSQGEPGSFLGFESSLKGTSEVGYPGGPFDPLGLSKEADKWADWKLKEVKNGRL 192
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
AM A LGF Q Y TG GPV+NL HL DP+ N T
Sbjct: 193 AMLAFLGFVAQKYATGAGPVDNLVAHLKDPWHVNYAT 229
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 137 bits (344), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 130/253 (51%), Gaps = 39/253 (15%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPV S+ AA P V SP +A +R +LP GL + P +L G +P
Sbjct: 21 KPVTALSRSMAAIPGHH--VFQSP-RARIAVRASTERATWLP-GL----DPPPHLDGTLP 72
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GD+G+DP GL ++P + Y EL+H R+AM G AG + + G N P VWF+
Sbjct: 73 GDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIRVSGINNLP--VWFEA 130
Query: 164 GALLLD-GNTLNYFGKNIPINLVFAVIAE-----------------IVLDLEDKL----- 200
GA D NT F + L+ AE L +E L
Sbjct: 131 GATKFDFANTTALFF----VQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQP 186
Query: 201 -HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
+PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +QA VT GP++NL HL
Sbjct: 187 GYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPIDNLLTHL 246
Query: 259 SDPFANNLLTVIS 271
SDPF N++ +S
Sbjct: 247 SDPFNKNIIHTLS 259
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/191 (40%), Positives = 105/191 (54%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 7 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGL----- 61
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIP---------INLVFAVIAE----IVLDLEDKL 200
W K + G Y G +P I V AE + D E K
Sbjct: 62 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKK 118
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL+
Sbjct: 119 YPGGAFDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLA 178
Query: 260 DPFANNLLTVI 270
DP+ NN+ +I
Sbjct: 179 DPWHNNIGDII 189
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 104/191 (54%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 52 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 106
Query: 155 GPEAVWFKTGALLLD-GNTLNYFGKNIP---------INLVFAVIAE----IVLDLEDKL 200
W + + G Y G +P I V AE + D E K
Sbjct: 107 ---GNWVQAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTMEKDPEKKK 163
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F K+KEIKNGRLAM A + F + Q+ G GP+ENLA HLS
Sbjct: 164 YPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVAFCVQQSAYPGTGPLENLASHLS 223
Query: 260 DPFANNLLTVI 270
DP+ NN+ +I
Sbjct: 224 DPWHNNIGDII 234
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/253 (39%), Positives = 130/253 (51%), Gaps = 39/253 (15%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPV S+ AA P V SP +A +R +LP GL + P +L G +P
Sbjct: 21 KPVTALSRSMAAIPGHH--VFQSP-RARIAVRASTERATWLP-GL----DPPPHLDGTLP 72
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GD+G+DP GL ++P + Y EL+H R+AM G AG + + G N P VWF+
Sbjct: 73 GDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDFIRVSGINNLP--VWFEA 130
Query: 164 GALLLD-GNTLNYFGKNIPINLVFAVIAE-----------------IVLDLEDKL----- 200
GA D NT F + L+ AE L +E L
Sbjct: 131 GATKFDFANTTALFF----VQLLLMGFAETKRYMDFINPGSQAEEGTFLGIEAALAGSQP 186
Query: 201 -HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
+PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +QA VT GP++NL HL
Sbjct: 187 GYPGGPLFNPLGLAKDIENADEAKLKEIKNGRLAMVAMLGFIVQASVTHVGPIDNLLTHL 246
Query: 259 SDPFANNLLTVIS 271
SDPF N++ +S
Sbjct: 247 SDPFNKNIIHTLS 259
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 110/209 (52%), Gaps = 23/209 (11%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
G RI + + P YL G PGD+G+DP L + P++ +++ ELIH RWAML
Sbjct: 37 GSSSRITMSADWMPGQPRPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAML 96
Query: 137 GAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIP-------INLVFAV 188
G ++PEA W K + G Y G+ +P + + F
Sbjct: 97 AVPGILVPEALGL--------GNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLA 148
Query: 189 IA------EIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL- 241
IA + D E K +PGG FDPLG +KDP +F KVKEIKNGRLA+ A +G +
Sbjct: 149 IAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGICVQ 208
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVI 270
Q+ G GP+ENLA HL+DP+ NN+ +I
Sbjct: 209 QSAYPGTGPLENLATHLADPWHNNIGDII 237
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/252 (39%), Positives = 133/252 (52%), Gaps = 31/252 (12%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S KP FS+ AA P P +A+ +R +LP GL + P YL G
Sbjct: 16 SLSKPPTAFSRSTAAMPGHH---VQPPRARVVARASAAERATWLP-GL----DPPPYLDG 67
Query: 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVW 160
+PGDYG+DP GL ++P D Y EL+H R+AM G AG + + G + P VW
Sbjct: 68 TLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGISNLP--VW 125
Query: 161 FKTGALLLD--GNTLNYFGKNIPINLV-FAVIAEIV-----------LDLEDKL------ 200
F+ GA D T +F + + + V +IV L +E L
Sbjct: 126 FEAGATKFDFANTTALFFVQLLLMGFVETKRYMDIVNPGSQAEEGTFLGIEASLEGLQPG 185
Query: 201 HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
+PGGP F+P+GLAKD +K+KEIKNGRLAM AMLGFF+QA VT GP++NL HLS
Sbjct: 186 YPGGPLFNPMGLAKDIKNAHEVKLKEIKNGRLAMVAMLGFFVQASVTHVGPIDNLLIHLS 245
Query: 260 DPFANNLLTVIS 271
DPF NN++ +
Sbjct: 246 DPFNNNIIHAFT 257
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 112/217 (51%), Gaps = 36/217 (16%)
Query: 80 RRIFLPEGLLDRSEIPEYL----TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
R+ +LP S+IP +L + G++G+DP GL K P YQ ELIH R AM
Sbjct: 27 RQSWLPG-----SQIPAHLDTPAAQALAGNFGFDPLGLGKDPVALRWYQQAELIHCRTAM 81
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI--- 192
G AG +IP K GA PE W+ G + ++ N+ +G + + L E
Sbjct: 82 AGVAGILIPGLLTKAGALNVPE--WYDAGKVAIE-NSFAPWGSLLAVQLFLCGFVEAKRW 138
Query: 193 --------------VLDLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRL 231
L E L +PGGPFDPLGL+K+ D++A K+KE+KNGRL
Sbjct: 139 QDIRKPGSQGEPGSFLGFEASLKGTSELGYPGGPFDPLGLSKEADKWADWKLKEVKNGRL 198
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
AM A LGF Q Y TG GPV+NLA HL DP+ N T
Sbjct: 199 AMLAFLGFVAQKYATGAGPVDNLAAHLKDPWHVNYAT 235
>gi|330318814|gb|AEC11067.1| chlorophyll a/b binding protein [Camellia sinensis]
Length = 107
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/87 (77%), Positives = 74/87 (85%)
Query: 194 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 253
L+LEDKLHP GPFDPLGLAKDPDQ A+LKVKEIKNGRL MF +LGFF+QA VTGEGPVE
Sbjct: 21 LNLEDKLHPSGPFDPLGLAKDPDQGAILKVKEIKNGRLTMFPILGFFIQASVTGEGPVEK 80
Query: 254 LAKHLSDPFANNLLTVISGNAERAPTL 280
LAKH+ DPFAN LT ++G ERA TL
Sbjct: 81 LAKHVRDPFANKDLTKLAGFEERASTL 107
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 103/187 (55%), Gaps = 23/187 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL P++F +++ E+ H RWAML G ++PEA
Sbjct: 25 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGL----- 79
Query: 155 GPEAVWFKTGALL-LDGNTLNYFGKNIP---------INLVFAVIAE----IVLDLEDKL 200
W K + G YFG +P I V AE + D E K
Sbjct: 80 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEHQRTMEKDPEKKK 136
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP +F K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL+
Sbjct: 137 YPGGAFDPLGFSKDPVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLA 196
Query: 260 DPFANNL 266
DP+ NN+
Sbjct: 197 DPWHNNI 203
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 105/191 (54%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGL----- 111
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIP-------INLVFAVIA------EIVLDLEDKL 200
W K + G YFG +P + + F IA + D E K
Sbjct: 112 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQRTMEKDPEKKK 168
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP + K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL+
Sbjct: 169 YPGGAFDPLGFSKDPVKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLA 228
Query: 260 DPFANNLLTVI 270
DP+ NN+ V+
Sbjct: 229 DPWHNNIGDVV 239
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 106/201 (52%), Gaps = 22/201 (10%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P YL G +PG +G+DPFGL P + ++Q EL+H+RWAM G A
Sbjct: 29 RVVMKAGNWLPGSDTPAYLDG-LPGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVA 87
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL----- 194
G + GA + W++ ++G Y G +P NL + E V
Sbjct: 88 GAL--------GAELLGQGDWYQAPLWAVNGGAPTYLGIPVPFNLSTLLAIEFVAIAGAE 139
Query: 195 -------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247
D E + +PGG FDPLG +KD K+KE+KNGRLAM A +GF Q TG
Sbjct: 140 AQRNAEPDAEKRKYPGGAFDPLGFSKDSKVLEENKLKELKNGRLAMLAFVGFIAQHAATG 199
Query: 248 EGPVENLAKHLSDPFANNLLT 268
+GP+E L HL+DP+ N T
Sbjct: 200 KGPLEALKLHLADPWGANFAT 220
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 113/211 (53%), Gaps = 37/211 (17%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSK--KPDDFS--KYQAY-ELIHARWAMLGAAGFIIPEA 146
S+ YL G +PGDYG+DP GLS +F + +Y E+I+ R+AMLGAAG I PE
Sbjct: 66 SQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEI 125
Query: 147 FNKFGANCGPEA-VWFKTGALLLDGNTLNYFGKNIPINLVFAVIA--------------- 190
F K G A VWFKTG G T NY+ P L F +A
Sbjct: 126 FGKIGIIPQQTAVVWFKTGVFPPAG-TYNYWAD--PYTLFFLEMALMGFAEHRRAQDYYK 182
Query: 191 ------EIVLDLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 237
+ L E L +PGG F+P G KD LK+KE+KNGRLAM A+L
Sbjct: 183 PGSMGKQYFLGFEKYLGGSGDPAYPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAMLAIL 242
Query: 238 GFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
G+F+QA TG GP +NL HL+DPFANN+LT
Sbjct: 243 GYFIQAPFTGVGPFQNLLDHLADPFANNILT 273
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 109/202 (53%), Gaps = 31/202 (15%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGDYG+DP GL ++P+D Y EL+H R+AM G AG + + G
Sbjct: 60 PAYLDGTLPGDYGFDPLGLGEQPEDLKWYVQAELVHCRFAMAGVAGILGTDLIRVSGIGN 119
Query: 155 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAE-----------------IVLDL 196
P VWF+ GA D NT F + L+ E L +
Sbjct: 120 LP--VWFEAGATKFDFANTTALFF----VQLLLMGFVETKRYMDFVSPGSQAKEGTFLGI 173
Query: 197 EDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
E L +PGGP F+P+GLAKD + +K+KEIKNGRLAM AMLGF +QA VT G
Sbjct: 174 EASLEGLQPGYPGGPLFNPMGLAKDIENANEVKLKEIKNGRLAMVAMLGFIVQASVTHAG 233
Query: 250 PVENLAKHLSDPFANNLLTVIS 271
P++NL HLSDPF N++ ++
Sbjct: 234 PIDNLLTHLSDPFNKNIIHALT 255
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/211 (43%), Positives = 113/211 (53%), Gaps = 37/211 (17%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSK--KPDDFS--KYQAY-ELIHARWAMLGAAGFIIPEA 146
S+ YL G +PGDYG+DP GLS +F + +Y E+I+ R+AMLGAAG I PE
Sbjct: 66 SQSLSYLDGTLPGDYGFDPLGLSDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEI 125
Query: 147 FNKFGANCGPEA-VWFKTGALLLDGNTLNYFGKNIPINLVFAVIA--------------- 190
F K G A VWFKTG G T NY+ P L F +A
Sbjct: 126 FGKIGIIPQETAVVWFKTGVFPPAG-TYNYWAD--PYTLFFLEMALMGFAEHRRAQDFYK 182
Query: 191 ------EIVLDLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 237
+ L E L +PGG F+P G KD LK+KE+KNGRLAM A+L
Sbjct: 183 PGSMGKQYFLGFEKYLGGSGDPAYPGGIFNPFGFGKDEKSMRTLKIKEVKNGRLAMLAIL 242
Query: 238 GFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
G+F+QA TG GP +NL HL+DPFANN+LT
Sbjct: 243 GYFIQAPFTGVGPFQNLLDHLADPFANNILT 273
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 105/191 (54%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 60 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGL----- 114
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-EIVL------------DLEDKL 200
W K + G Y G +P + ++A E V D E K
Sbjct: 115 ---GNWVKAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEHQRTMEKDPEKKK 171
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG ++DP + K+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL+
Sbjct: 172 YPGGAFDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAAHLA 231
Query: 260 DPFANNLLTVI 270
DP+ NN+ +I
Sbjct: 232 DPWHNNIGDII 242
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 134 bits (336), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 101/187 (54%), Gaps = 23/187 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +++ ELIH RWAML G ++PEA
Sbjct: 56 PSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL----- 110
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIP-------INLVFAVIA------EIVLDLEDKL 200
W K L G Y G +P + + F IA + D E K
Sbjct: 111 ---GNWVKAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK 167
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLS 259
+PGG FDPLG +KDP +F K+KE+KNGRLA+ A +G +Q G GP+ENLA HL+
Sbjct: 168 YPGGAFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQTAYPGTGPLENLATHLA 227
Query: 260 DPFANNL 266
DP+ NN+
Sbjct: 228 DPWHNNI 234
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 81/193 (41%), Positives = 109/193 (56%), Gaps = 28/193 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF------- 147
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEALGYGNWVS 70
Query: 148 -NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL--------DLED 198
K+ A G +A + GN + + N+PI L IA + D E
Sbjct: 71 AQKWAATPGGQATYL--------GNPVPW--GNLPIILAVEFIAIAFVESQRNGESDPEK 120
Query: 199 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKH 257
+ +PGGPFDPLG +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL H
Sbjct: 121 RKYPGGPFDPLGFSKGAN-LEELKLKEIKNGRLALVAFLGFVVQAVAYPGTGPLENLKTH 179
Query: 258 LSDPFANNLLTVI 270
L+DP+ N + V+
Sbjct: 180 LADPWHNTIAHVL 192
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 109/297 (36%), Positives = 151/297 (50%), Gaps = 55/297 (18%)
Query: 19 MLGNPLN-VSSAVRTSAPGASNPSTFKPVAL-----FSKKK---AAPPAKSKPVAVSPVN 69
++ NPL+ +++++ ++ A+ S P + F++KK A A ++P A S
Sbjct: 7 LIRNPLSFLNTSIHSTMATAALASVSVPAVVCGKPAFAEKKFLGARVAAAARPQA-SKAA 65
Query: 70 EELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQ 124
+ + K DR++F + YL G PGD+GYDP GL K P+ K+
Sbjct: 66 KFVVKAEKSDRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWL 119
Query: 125 AY-ELIHARWAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
AY E+IH R+AMLG AG + PE K G A G VWFKTG + +G +Y+ +
Sbjct: 120 AYSEVIHCRYAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGVIPSEGQ-YDYWASPL 176
Query: 181 P---INLVFAVIAEI----------------VLDLE-------DKLHPGGP-FDPLGLAK 213
I +V AE+ L LE D +PGG F+ LG K
Sbjct: 177 ALFWIEVVLMQFAELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGK 236
Query: 214 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
D LK+KE+KNGRLAM A LGFF+QA TGEGP +NL HL+DPF NN+LT
Sbjct: 237 DEKSMNDLKLKELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 293
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 135/269 (50%), Gaps = 46/269 (17%)
Query: 30 VRTSAPGASNPSTFKPVALFSKKKA-APPAKSKPVAVSPVNEELAKWY-GPDRRIFLPEG 87
RT++P +PVA +S ++ + PA SP +A G R +LP G
Sbjct: 18 TRTASP--------RPVAGWSCRRTLSTPAHHHHARSSPRARVVAVRAAGTQRATWLP-G 68
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L + P YL G +PGD+G+DP GL ++P+ Y EL+H R+AM G AG + +
Sbjct: 69 L----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLL 124
Query: 148 NKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEI-------------- 192
G + P VWF+ GA D NT F + L AE
Sbjct: 125 RVSGNSDLP--VWFEAGAAKFDFANTTALFF----VQLFLMGFAETKRYMDFKNPGSQAE 178
Query: 193 ---VLDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 242
+ LE L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +Q
Sbjct: 179 EGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQ 238
Query: 243 AYVTGEGPVENLAKHLSDPFANNLLTVIS 271
A VT GP++NL HLSDPF N++ S
Sbjct: 239 ASVTHAGPIDNLLTHLSDPFNKNIIHTFS 267
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 133 bits (334), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 115/212 (54%), Gaps = 33/212 (15%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAM 135
YG R FL + E P +L G + GD G+DP GL K DD + + EL+HARWAM
Sbjct: 158 YGARRVKFLGDA---EYEYPAHLDGSLCGDAGFDPLGLGK--DDLPRMRELELLHARWAM 212
Query: 136 LGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGN-TLNYFGK---NIPINLVFAVIA- 190
LG G +PE ++G E VW+K GA ++ + +L+YFG +I A+IA
Sbjct: 213 LGIVGVAVPELLERYGVADLGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAA 272
Query: 191 -EIVL-------------DLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIK 227
++VL LE DK +PGG PFDP ++ D D+F KV EIK
Sbjct: 273 CQVVLMGGPEYARYVGIDSLEPVGVYLPGDKDYPGGAPFDPFKISDDADEFEKQKVMEIK 332
Query: 228 NGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
+GRLAM AMLG QA+VT GP+ENLA S
Sbjct: 333 HGRLAMIAMLGVAAQAFVTRAGPIENLASVFS 364
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 147/300 (49%), Gaps = 47/300 (15%)
Query: 2 ASLAASSTPAASIGAKEMLGNPLNVSS-AVRTSAPGASNPSTFKPVALFSKKKA-APPAK 59
SL T A++ + N + S+ RT++P +PVA +S ++ + PA
Sbjct: 35 CSLPGKQTSPAAMASTVTAANSSHGSALRTRTASP--------RPVAGWSCRRTLSTPAH 86
Query: 60 SKPVAVSPVNEELAKWY-GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
SP +A G R +LP GL + P YL G +PGD+G+DP GL ++P+
Sbjct: 87 HHHARPSPRARVVAVRAAGTQRATWLP-GL----DPPPYLDGTLPGDFGFDPLGLGEEPE 141
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFG 177
Y EL+H R+AM G AG + + G + P VWF+ GA D NT F
Sbjct: 142 ALKWYVQAELVHCRFAMAGVAGILFTDLLRVSGNSDLP--VWFEAGAAKFDFANTTALFF 199
Query: 178 KNIPINLVFAVIAEI-----------------VLDLEDKL------HPGGP-FDPLGLAK 213
+ L AE + LE L +PGGP F+PLGLAK
Sbjct: 200 ----VQLFLMGFAETKRYMDFKNPGSQAEEGTFIGLEAALAGQQPGYPGGPLFNPLGLAK 255
Query: 214 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
D + K+KEIKNGRLAM AMLGF +QA VT GP++NL HLSDPF N++ S +
Sbjct: 256 DIENAHDEKLKEIKNGRLAMVAMLGFMVQASVTHAGPIDNLLTHLSDPFNKNIIHTFSSS 315
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/191 (39%), Positives = 102/191 (53%), Gaps = 23/191 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP L + P++ +++ ELIH WAML G ++PEA
Sbjct: 51 PPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGL----- 105
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K + G Y G +P + ++A L D E K
Sbjct: 106 ---GNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSMGKDPEKKK 162
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP F KVKE+KNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 163 YPGGAFDPLGYSKDPKTFHEYKVKELKNGRLALLAFVGFCVQQSAYPGTGPLENLAAHLA 222
Query: 260 DPFANNLLTVI 270
DP+ NN+ +I
Sbjct: 223 DPWHNNIGNII 233
>gi|338746088|emb|CCC15093.1| putative chloroplast light-harvesting complex II protein precursor
[Lepidodinium chlorophorum]
Length = 215
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 99/177 (55%), Gaps = 18/177 (10%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+D GLS P+ + + EL+HARWAMLGA G ++PE +
Sbjct: 37 PSYLDGSLVGDYGWDTSGLSTTPEALLRNRELELLHARWAMLGALGSLLPELLATYAGTP 96
Query: 155 GPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIAEIVL----------------DL 196
E VWFK GA + L+Y G + + A++ VL ++
Sbjct: 97 LLEPVWFKAGAQIFSPGGLDYLGNPSLVHAQSILAILGFQVLLMGLSEGYRLAGGPLGEV 156
Query: 197 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 253
D L+PG FDPLG ++DP+ L+ KEIKNGRLAM AMLG + QA VTG+GPV N
Sbjct: 157 GDALYPGASFDPLGFSEDPESLLELQTKEIKNGRLAMLAMLGMYTQALVTGKGPVSN 213
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 144/294 (48%), Gaps = 69/294 (23%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
A + +++LG P+ S+ R+SA + + ++PPAK
Sbjct: 5 ALLSGRQLLGRPVQ-SAVSRSSA---------RKAPFVVRASSSPPAKQ----------- 43
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY 126
G DR+++ + YL G +PGDYG+DP GLS P+ K+ AY
Sbjct: 44 -----GADRQLWFAS-----KQSLSYLDGTLPGDYGFDPLGLSD-PEGTGGFIEPKWLAY 92
Query: 127 -ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPI- 182
E+I+ R+AMLGA G I PE F K G PE WFKTG + G T NY+ + +
Sbjct: 93 GEVINGRYAMLGAVGAIAPEIFGKMGI-IPPETALPWFKTGVIPPAG-TYNYWADSYTLF 150
Query: 183 --NLVFAVIAE----------------IVLDLE-------DKLHPGGP-FDPLGLAKDPD 216
N+ AE L LE D +PGGP F+PLG K
Sbjct: 151 VFNMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKFLAGSGDPSYPGGPLFNPLGFGKTEK 210
Query: 217 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
+ LK+KEIKNGRLAM A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 211 EMNELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 264
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 104/190 (54%), Gaps = 25/190 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 57 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 111
Query: 155 GPEAVWFKTG--ALLLDGNTLNYFGKNIP-------INLVFAVIA------EIVLDLEDK 199
W K A L DG Y G +P + + F IA + D E K
Sbjct: 112 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKK 167
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 258
+PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+EN HL
Sbjct: 168 KYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENPGTHL 227
Query: 259 SDPFANNLLT 268
+DP+ N T
Sbjct: 228 ADPWHNTSAT 237
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 135/269 (50%), Gaps = 46/269 (17%)
Query: 30 VRTSAPGASNPSTFKPVALFSKKKA-APPAKSKPVAVSPVNEELAKWY-GPDRRIFLPEG 87
RT++P +PVA +S ++ + PA SP +A G R +LP G
Sbjct: 18 TRTASP--------RPVAGWSCRRTLSTPAHHHHARPSPRARVVAVRAAGTQRATWLP-G 68
Query: 88 LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147
L + P YL G +PGD+G+DP GL ++P+ Y EL+H R+AM G AG + +
Sbjct: 69 L----DPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGVAGILFTDLL 124
Query: 148 NKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEI-------------- 192
G + P VWF+ GA D NT F + L AE
Sbjct: 125 RVSGNSDLP--VWFEAGAAKFDFANTTALFF----VQLFLMGFAETKRYMDFKNPGSQAE 178
Query: 193 ---VLDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 242
+ LE L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +Q
Sbjct: 179 EGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHDEKLKEIKNGRLAMVAMLGFMVQ 238
Query: 243 AYVTGEGPVENLAKHLSDPFANNLLTVIS 271
A VT GP++NL HLSDPF N++ S
Sbjct: 239 ASVTHAGPIDNLLTHLSDPFNKNIIHTFS 267
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/282 (37%), Positives = 141/282 (50%), Gaps = 59/282 (20%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AVR S S PS+ S +K + A S PV + N +L W+ + +
Sbjct: 16 AEAVRQSFGARSLPSSIG-----SSRKGSFVVKAASSPPVKQNGANRQL--WFASKQSL- 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLG 137
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLG
Sbjct: 68 ------------SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLG 114
Query: 138 AAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAE-- 191
AAG I PE K G A+ WF+TG + G T NY+ N + + F AE
Sbjct: 115 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTLFVMEMAFMGFAEHR 173
Query: 192 --------------IVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNG 229
L LE L +PGGP F+PLG KD LK+KE+KNG
Sbjct: 174 RFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNG 233
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
RLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT ++
Sbjct: 234 RLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSLN 275
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 138/278 (49%), Gaps = 55/278 (19%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ AVR S S PS+ S+K + + PV N +L W+ + +
Sbjct: 314 AEAVRQSFGARSLPSSIGS----SRKGSFVVKAAAPVKKGGANRQL--WFASKQSL---- 363
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAG 140
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG
Sbjct: 364 ---------SYLDGSLPGDFGFDPLGLSD-PEGVGGFIEPEWLAYGEIINGRFAMLGAAG 413
Query: 141 FIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAE----- 191
I PE K G A+ WF+TG + G T NY+ N + + F AE
Sbjct: 414 AIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTLFVMEMAFMGFAEHRRLQ 472
Query: 192 -----------IVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
L LE L +PGGP F+PLG KD LK+KE+KNGRLA
Sbjct: 473 DWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLA 532
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
M A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 533 MLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 570
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 103/193 (53%), Gaps = 31/193 (16%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S P +LTG + GD G+DP L K P+ ++ EL+HARWAML G +PEA + G
Sbjct: 185 SSPPPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVPEALSIAG 244
Query: 152 A----NCGPEAVWFKTGALLLDGNTLNYFGKN---IPINLVFAVIAEI------------ 192
A E VW+K GA L+G +LNY G I AVIA
Sbjct: 245 ALPEGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLMGGPEYAR 304
Query: 193 ---VLDLE--------DKLHPGG-PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
+ LE D +PGG PFDP GL+ D D+FA KV EI++GRLAM AMLG F
Sbjct: 305 YVGIRSLEPVGVYLPGDANYPGGAPFDPFGLSDDADRFARQKVIEIEHGRLAMVAMLGCF 364
Query: 241 LQAYVTGEGPVEN 253
QA VTGEGPV N
Sbjct: 365 AQAIVTGEGPVAN 377
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 140/281 (49%), Gaps = 59/281 (20%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAA---PPAKSKPVAVSPVNEELAKWYGPDRRIF 83
+ AVR S S PS+ S +K + A S PV + N +L W+ + +
Sbjct: 16 AEAVRQSFGARSLPSSIG-----SSRKGSFVVKAASSPPVKQNGANRQL--WFASKQSL- 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLG 137
YL G +PGD+G+DP GLS P+ ++ AY E+I+ R+AMLG
Sbjct: 68 ------------SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLG 114
Query: 138 AAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAE-- 191
AAG I PE K G A+ WF+TG + G T NY+ N + + F AE
Sbjct: 115 AAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYNYWADNYTLFVMEMAFMGFAEHR 173
Query: 192 --------------IVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNG 229
L LE L +PGGP F+PLG KD LK+KE+KNG
Sbjct: 174 RFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNG 233
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
RLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 234 RLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNILTSL 274
>gi|12240089|gb|AAG49561.1| light-harvesting chlorophyll-binding protein [Citrus reticulata]
Length = 156
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 96/157 (61%), Gaps = 19/157 (12%)
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
GE PGDYG+D GLS P+ F+K + E+IH+RWAMLGA G + PE +K G G EAV
Sbjct: 1 GEFPGDYGWDTAGLSADPETFAKNREPEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAV 59
Query: 160 WFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLEDKLH 201
WFK GA + L+Y G I + A+ A ++VL + D L+
Sbjct: 60 WFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIGGGPLGEGLDPLY 119
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 238
PGG FDPLGLA PDQFA LKVKE+KNGRLAMF+M G
Sbjct: 120 PGGAFDPLGLADGPDQFAELKVKELKNGRLAMFSMFG 156
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 117/208 (56%), Gaps = 31/208 (14%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
W+G R ++L G L ++ P++L+GE+PGDYG+DP GL + P +Y EL+HARWA
Sbjct: 123 WFGAARPLWL--GPLS-TQPPQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWA 179
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTG-ALLLDGNTLNYFGK---NIPINLVFAVIA 190
MLGA G ++PE G+ E W+ G A L G L Y G + A+IA
Sbjct: 180 MLGALGAVVPELLQLAGSATFLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQGVAIIA 239
Query: 191 --EIVL-------------DLE--------DKLHPGGP-FDPLGLAKDPDQFALLKVKEI 226
+++L LE DK +PGG FDPL L+ D +++ ++V+EI
Sbjct: 240 FCQVLLMFGPEYARACGISALEPLGVFLPGDKNYPGGWLFDPLQLSGDAERYEAMRVREI 299
Query: 227 KNGRLAMFAMLGFFLQAYVTGEGPVENL 254
KNGRLAM A LGF QA VT +GPV+NL
Sbjct: 300 KNGRLAMVAWLGFAAQAAVTRQGPVQNL 327
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 104/198 (52%), Gaps = 18/198 (9%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 27 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 86
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL----- 194
G + E W+ ++G +FG +P +L + E V
Sbjct: 87 GSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 138
Query: 195 ----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q TG+GP
Sbjct: 139 GQRGDAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGP 198
Query: 251 VENLAKHLSDPFANNLLT 268
+ L +HL++P+ N T
Sbjct: 199 IAALGEHLANPWGANFAT 216
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 120/258 (46%), Gaps = 41/258 (15%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
SS + S GA+ S L +K +P S+ V V V + PDR ++ P
Sbjct: 19 SSQINGSTVGATKASFLSGKRLTVRKHTSPVVASRSVTVCAVAD-------PDRPLWFPG 71
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
S P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG IPE
Sbjct: 72 -----STPPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEF 126
Query: 147 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE--------------- 191
K G P W+ G L +T F I L+F AE
Sbjct: 127 LTKIGILNTPS--WYDAGKLEYFTDTTTLF----IIELIFIGWAEGRRWADILKPGCVNT 180
Query: 192 ------IVLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQA 243
L D +PGG FDPLG P++ L+ KEIKNGRLAM A++G + Q
Sbjct: 181 DPIFPNNRLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQH 240
Query: 244 YVTGEGPVENLAKHLSDP 261
TG GP++NL HL+DP
Sbjct: 241 IYTGTGPIDNLFAHLADP 258
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 104/198 (52%), Gaps = 18/198 (9%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL----- 194
G + E W+ ++G +FG +P +L + E V
Sbjct: 91 GSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 142
Query: 195 ----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q TG+GP
Sbjct: 143 GQRGDAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGP 202
Query: 251 VENLAKHLSDPFANNLLT 268
+ L +HL++P+ N T
Sbjct: 203 IAALGEHLANPWGANFAT 220
>gi|13676402|dbj|BAB41190.1| type I chlorophyll a/b-binding protein a [Amaranthus tricolor]
Length = 154
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 95/155 (61%), Gaps = 19/155 (12%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P+ F+K + E+IH RWAMLGA G I PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLARNGVKFG-EAVWFKAG 59
Query: 165 ALLLDGNTLNYFGKNIPINL--VFAVIA-EIVL---------------DLEDKLHPGGPF 206
+ + L+Y G I+ + A+ A +++L ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPTLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSF 119
Query: 207 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
DPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|15637137|gb|AAL04435.1| chlorophyll a/b binding protein [Beta vulgaris]
Length = 168
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 96/159 (60%), Gaps = 19/159 (11%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 165 ALLLDGNTLNYFG--KNIPINLVFAVIA-EIVL---------------DLEDKLHPGGPF 206
+ + L+Y G + + A+ A +++L ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSF 119
Query: 207 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV 245
DPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+QA V
Sbjct: 120 DPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIV 158
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/250 (37%), Positives = 126/250 (50%), Gaps = 48/250 (19%)
Query: 46 VALFSKKKA--APPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG--- 100
+AL K+ A A PA S+ V+ V R+ +LP SEIP++L
Sbjct: 1 MALMMKRSAVAARPAVSRKAVVTCVA----------RQSWLPG-----SEIPKHLDSPAA 45
Query: 101 -EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV 159
+ G++G+DP GL K + YQ EL+HAR AM AG +IP K GA PE
Sbjct: 46 LAMAGNFGFDPLGLGKDAEALRWYQQAELVHARTAMTAVAGILIPGLLTKAGALNVPE-- 103
Query: 160 WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI-----------------VLDLE----- 197
W+ G + ++ ++ FG + + L E L E
Sbjct: 104 WYDAGKVAIE-SSFAPFGALLAVQLFLTGFVEAKRWQDFKKPGSQAEKGSFLGFETAFAG 162
Query: 198 --DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
D +PGG FDPLGL+KD D+ A K+KEIKNGRLAM A LGF Q + TG+GP++NLA
Sbjct: 163 TGDNGYPGGIFDPLGLSKDADKLADWKLKEIKNGRLAMVAFLGFTAQKFATGKGPIDNLA 222
Query: 256 KHLSDPFANN 265
HL+DP+ N
Sbjct: 223 AHLADPWHVN 232
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 101/189 (53%), Gaps = 21/189 (11%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
SE EYL ++PG++ +DP L K+ +Y+ ELIH RWAMLGAAG + E
Sbjct: 41 SEPKEYLN-DLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGL-- 97
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDK 199
W+ + G+ +FG +P ++ + E+V D+E +
Sbjct: 98 ------GNWYDAPLWAVTGDKPTWFGIEVPFDIATILGVEVVAMAVAEGLRNDNQDMEKR 151
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
L+PGG FDPLG +KDP F K+KE+KNGRLAM A LGF Q TG+ +E L HLS
Sbjct: 152 LYPGGAFDPLGFSKDPKSFEDKKLKELKNGRLAMVACLGFAGQHAATGKPILEALGDHLS 211
Query: 260 DPFANNLLT 268
PF NN T
Sbjct: 212 SPFFNNFAT 220
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 107/193 (55%), Gaps = 28/193 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF------- 147
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA
Sbjct: 54 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGYGNWVS 113
Query: 148 -NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL--------DLED 198
K+ A G +A + GN + + N+P+ L +A D E
Sbjct: 114 AQKWAATPGGQATYL--------GNPVPW--GNLPVILAIEFLAIAFAESQRNGEPDPEK 163
Query: 199 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKH 257
+ +PGG FDPLG +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL H
Sbjct: 164 RKYPGGAFDPLGFSKGAN-LEELKLKEIKNGRLALVAFLGFAVQAIAYPGTGPLENLKTH 222
Query: 258 LSDPFANNLLTVI 270
L+DP+ N + VI
Sbjct: 223 LADPWHNTIAHVI 235
>gi|13676406|dbj|BAB41192.1| type I chlorophyll a/b-binding protein b [Amaranthus tricolor]
Length = 154
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 94/155 (60%), Gaps = 19/155 (12%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P+ F+K + E+IH RWAMLGA G + PE + G G EAVWFK G
Sbjct: 1 DYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAG 59
Query: 165 ALLLDGNTLNYFG--KNIPINLVFAVIA-EIVL---------------DLEDKLHPGGPF 206
+ + L+Y G I + A+ A +++L ++ D L+PGG F
Sbjct: 60 SQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDPLYPGGSF 119
Query: 207 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
DPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 120 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 154
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 118/228 (51%), Gaps = 45/228 (19%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHAR 132
DR++F + YL G PGD+GYDP GL K P+ K+ AY E+IH R
Sbjct: 53 DRQLFFSD-----KAAQSYLDGSKPGDFGYDPLGLYK-PEGAGGFIDPKWLAYSEVIHCR 106
Query: 133 WAMLGAAGFIIPEAFNKFG---ANCGPEAVWFKTGALLLDGNTLNYFGKNIP---INLVF 186
+AMLG AG + PE K G A G VWFKTG + +G +Y+ + I +V
Sbjct: 107 YAMLGMAGMVAPEILGKLGLIPAETG--LVWFKTGVIPSEGQ-YDYWASPLALFWIEVVL 163
Query: 187 AVIAEI----------------VLDLE-------DKLHPGGP-FDPLGLAKDPDQFALLK 222
AE+ L LE D +PGG F+ LG KD LK
Sbjct: 164 MQFAELRRWQDYRHPGSQSKQYFLGLEQFFGGSGDPSYPGGAIFNFLGYGKDEKSMNDLK 223
Query: 223 VKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
+KE+KNGRLAM A LGFF+QA TGEGP +NL HL+DPF NN+LT
Sbjct: 224 LKELKNGRLAMVATLGFFIQAMATGEGPFQNLTDHLADPFNNNILTTF 271
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 102/198 (51%), Gaps = 18/198 (9%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K P ++ E+IH RWAMLG A
Sbjct: 31 RVVMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVA 90
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL----- 194
G + E W+ + G +FG +P +L + E V
Sbjct: 91 GALAVELLGY--------GNWYDAPLWAVTGGKATWFGIEVPFDLNTLLAFEFVAMAAAE 142
Query: 195 ----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q TG+GP
Sbjct: 143 GQRNDAGGVIYPGGAFDPLGFAKDSSKAGELKLKEIKNGRLAMVAFLGFIAQHAATGKGP 202
Query: 251 VENLAKHLSDPFANNLLT 268
+ L +HL++P+ N T
Sbjct: 203 LAALGEHLANPWGANFAT 220
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 137/261 (52%), Gaps = 49/261 (18%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R +++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AAAPPVKQ------GANRPLWVAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
GDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 72 GDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAET 130
Query: 158 AV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA-------------------EIVLDLE 197
A+ WF+TG + G T Y+ N + ++ + + L LE
Sbjct: 131 ALPWFQTGVIPPAG-TYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLE 189
Query: 198 DKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG G
Sbjct: 190 KGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 249
Query: 250 PVENLAKHLSDPFANNLLTVI 270
P +NL HL+DP NN+LT +
Sbjct: 250 PYQNLLDHLADPVNNNVLTSL 270
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 99/261 (37%), Positives = 136/261 (52%), Gaps = 49/261 (18%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
GDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 72 GDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAET 130
Query: 158 AV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA-------------------EIVLDLE 197
A+ WF+TG + G T Y+ N + ++ + + L LE
Sbjct: 131 ALPWFQTGVIPPAG-TYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLE 189
Query: 198 DKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG G
Sbjct: 190 KGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 249
Query: 250 PVENLAKHLSDPFANNLLTVI 270
P +NL HL+DP NN+LT +
Sbjct: 250 PYQNLLDHLADPVNNNVLTSL 270
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 77/199 (38%), Positives = 105/199 (52%), Gaps = 28/199 (14%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
+R+++ P GL+ + P +L G +PGD+GYDP GL+K P ++Y+ E+++ RWAMLG
Sbjct: 37 ERKLWAP-GLV---KAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREAEVMNGRWAMLGV 92
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAV------IA 190
AG + PE + W + G Y G +P V AV
Sbjct: 93 AGMLAPELVG--------QGTWLSAQDWAVTGGKPTYLGNELPYGFGTVLAVEFFCLSWV 144
Query: 191 EIVLDLE----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 246
EI LE +++PGG FDPLG KD KVKE++NGRLAM A +G + Q
Sbjct: 145 EISRGLEKDPMKRIYPGGAFDPLGFGKDEVN----KVKELRNGRLAMVAFVGMWCQGIHV 200
Query: 247 GEGPVENLAKHLSDPFANN 265
G GPV NL HL+DP NN
Sbjct: 201 GGGPVSNLMDHLADPLHNN 219
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 130 bits (326), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 133/286 (46%), Gaps = 52/286 (18%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS+ ASS AA ++ SS S GA+ S L KK AP A +
Sbjct: 1 MASVCASSAMAAV--------ATISPSSQKTGSVVGATKASFLGGKRLSLKKFTAPAAGT 52
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ VS + P+R ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 53 RSFTVSAAAAD------PNRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPETL 101
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL--LLDGNTLNYFGK 178
E++H RWAMLGAAG IPE K G P W+ G L D TL
Sbjct: 102 KWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDKTTL----- 154
Query: 179 NIPINLVFAVIAE------IV---------------LDLEDKLHPGG-PFDPLGLAK-DP 215
+ ++F AE I+ L D +PGG FDPLG P
Sbjct: 155 -FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP 213
Query: 216 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
D+ L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 214 DKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADP 259
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 100/189 (52%), Gaps = 17/189 (8%)
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
L S+ P +L ++PG+YG+DP L K P ++ E+IH RWAMLG AG + E
Sbjct: 4 LPGSDAPAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLG 63
Query: 149 KFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL---------DLEDK 199
W+ ++G +FG ++P +L + E V D
Sbjct: 64 Y--------GNWYDAPLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQRGDAGGV 115
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
++PGG FDPLG AKD + LK+KE+KNGRLAM A LGF Q TG+GP+ L +HLS
Sbjct: 116 VYPGGAFDPLGFAKDASKSGELKLKEVKNGRLAMVAFLGFVAQHAATGKGPIAALGEHLS 175
Query: 260 DPFANNLLT 268
+P+ N T
Sbjct: 176 NPWGANFAT 184
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/262 (38%), Positives = 136/262 (51%), Gaps = 51/262 (19%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--TATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
GDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G PE
Sbjct: 72 GDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGL-IPPE 129
Query: 158 AV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIA-------------------EIVLDL 196
WF+TG + G T Y+ N + ++ + + L L
Sbjct: 130 TALPWFQTGVIPPAG-TYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGL 188
Query: 197 EDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
E L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG
Sbjct: 189 EKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 248
Query: 249 GPVENLAKHLSDPFANNLLTVI 270
GP +NL HL+DP NN+LT +
Sbjct: 249 GPYQNLLDHLADPVNNNVLTSL 270
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 112/205 (54%), Gaps = 31/205 (15%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD+G+DP GL + P+ Y EL+H+R+AMLG G ++ + G N
Sbjct: 68 PTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNS 127
Query: 155 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEI-----------------VLDL 196
P +WF+ GA+ + NT G + + L+ AE L
Sbjct: 128 IP--IWFEAGAVKYEFANT----GTLVVVQLLLMGYAETRRYMDFVSPGSQAKEGSFFGL 181
Query: 197 EDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
E L +PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+QA VT G
Sbjct: 182 EASLGGLEPGYPGGPLLNPLGLAKDIKSAREWKLKEIKNGRLAMVAILGIFVQASVTHVG 241
Query: 250 PVENLAKHLSDPFANNLLTVISGNA 274
P++NL +HLS+P+ ++ +++ ++
Sbjct: 242 PIDNLVEHLSNPWHKTIIQILASSS 266
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/200 (40%), Positives = 108/200 (54%), Gaps = 27/200 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GD+G+DP GL + P D Y EL+H+R+AM G AG + + G
Sbjct: 12 PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLLRASGRTD 71
Query: 155 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLDL--------EDKL----- 200
P VWF+ GA D +T F + + L+ V + +D+ ED
Sbjct: 72 IP--VWFEAGATKFDFADTTTLF--VVQLILMGFVETKRWMDIVKPGSQAAEDSFFGFEA 127
Query: 201 --------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
+PGGP F+PLG A DP + L+ KEIKNGRLAM AM+GF +QAYVT GP+
Sbjct: 128 AFEGLETGYPGGPLFNPLGFANDPTKPQPLRWKEIKNGRLAMVAMVGFMVQAYVTKTGPI 187
Query: 252 ENLAKHLSDPFANNLLTVIS 271
ENL HLSDP N ++ I+
Sbjct: 188 ENLLTHLSDPVHNTIIQRIA 207
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 147/307 (47%), Gaps = 76/307 (24%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
A +++SS A++ A+++LG SS+ R V+ + +A PPAK
Sbjct: 4 QALVSSSSITASAEAARQILGGRSFQSSSSRK-------------VSFAVRAEATPPAKQ 50
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
G DR+++ + YL G +PGDYG+DP GLS P+
Sbjct: 51 ----------------GADRQLWFAS-----KQSLSYLDGSLPGDYGFDPLGLSD-PEGT 88
Query: 121 S-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNT 172
+ AY E+I+ R+AMLGA G I PE K G PE WFKTG + G T
Sbjct: 89 GGFIEPSWLAYGEIINGRYAMLGAVGAIAPEILGKAGL-IPPETALPWFKTGVIPPAG-T 146
Query: 173 LNYFGKNIPINLVFAVIA---------------------EIVLDLE-------DKLHPGG 204
+Y+ P L +A + L E + ++PGG
Sbjct: 147 YDYWAD--PYTLFVFELALMGFAEHRRFQDFQKPGCLSKQYFLGFEKYFEGSGNPIYPGG 204
Query: 205 P-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFA 263
P F+PLG KD LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HLSDP
Sbjct: 205 PLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLSDPVN 264
Query: 264 NNLLTVI 270
NN+LT +
Sbjct: 265 NNILTSL 271
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 115/208 (55%), Gaps = 36/208 (17%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGRLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKA 123
Query: 151 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------- 190
G A+ WF+TG + G T NY+ N + ++ +
Sbjct: 124 GLIPQETALAWFQTGVIPPAG-TYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGK 182
Query: 191 EIVLDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 242
+ L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+LG+F+Q
Sbjct: 183 QYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQ 242
Query: 243 AYVTGEGPVENLAKHLSDPFANNLLTVI 270
A VTG GP +NL HL+DP NN+LT +
Sbjct: 243 ALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/284 (37%), Positives = 132/284 (46%), Gaps = 49/284 (17%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS ASST AA +P SS S GA+ S L K AP S
Sbjct: 1 MASACASSTIAAV-----AFSSP---SSQKNGSIVGATKASFLGGKRLRVSKFIAP-VGS 51
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
+ VAVS V + PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 52 RSVAVSAVAAD------PDRPLWFPG-----STPPEWLDGSLPGDFGFDPLGLGSDPESL 100
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
EL+H+RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 101 KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPS--WYTAGEQEYFTDTTTLF---- 154
Query: 181 PINLVFAVIAE------IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQ 217
I LV AE I+ L D +PGG FDPLG P +
Sbjct: 155 VIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAK 214
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 215 IKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 115/208 (55%), Gaps = 36/208 (17%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGAAG I PE K
Sbjct: 65 YLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKA 123
Query: 151 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------- 190
G A+ WF+TG + G T NY+ N + ++ +
Sbjct: 124 GLIPQETALAWFQTGVIPPAG-TYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGK 182
Query: 191 EIVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 242
+ L LE L +PGGP F+PLG KD LK+KEIKNGRLAM A+LG+F+Q
Sbjct: 183 QYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQ 242
Query: 243 AYVTGEGPVENLAKHLSDPFANNLLTVI 270
A VTG GP +NL HL+DP NN+LT +
Sbjct: 243 ALVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 101/187 (54%), Gaps = 23/187 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G PGD+G+DP GL+ P++ +++ E+ H RWAML G ++PEA
Sbjct: 26 PVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEALGL----- 80
Query: 155 GPEAVWFKTGALL-LDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKL 200
W K + G YFG +P + ++A L D E K
Sbjct: 81 ---GNWVKAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQRTMEKDPEKKK 137
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY-VTGEGPVENLAKHLS 259
+PGG FDPLG +KDP + K+KEI+NGRLAM A +GF +Q G GP+ENLA HL+
Sbjct: 138 YPGGAFDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCVQQSPYPGTGPLENLASHLA 197
Query: 260 DPFANNL 266
DP+ NN+
Sbjct: 198 DPWHNNI 204
>gi|148908677|gb|ABR17446.1| unknown [Picea sitchensis]
Length = 160
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 90/149 (60%), Gaps = 19/149 (12%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIAEI 192
MLGA G + PE K G G EAVWFK GA + L+Y G I + A+ A
Sbjct: 1 MLGALGCVFPELLAKTGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQ 59
Query: 193 VLDLE----------------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ + D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 60 VVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 119
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL HL+DP ANN
Sbjct: 120 FGFFVQAIVTGKGPIENLFDHLADPTANN 148
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 108/203 (53%), Gaps = 33/203 (16%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
SEIP YL GE+PGD+G+DP L + P YQ EL + RWAML AAG + + G
Sbjct: 45 SEIPSYLKGELPGDFGFDPLRLGEDPAALKWYQQAELQNGRWAMLAAAGILFVDLLGHLG 104
Query: 152 ANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKL--------- 200
A GP A WFK T F + L+FA + V +D +
Sbjct: 105 AG-GPAAATPWFKASDFTYFAPTSTLFIVEL---LLFAWVE--VRRYQDMVKPGSTNQDP 158
Query: 201 --------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 246
+PGG FDPLG +K A LK+KEIKN RLAM A+LGFF+QA T
Sbjct: 159 IFSQYSLPSGNEPGYPGGIFDPLGYSK--GNMAELKLKEIKNARLAMLAVLGFFVQAKTT 216
Query: 247 GEGPVENLAKHLSDPFANNLLTV 269
G+ P+++L+ HL+DP++NN+ +
Sbjct: 217 GKTPLDSLSSHLADPWSNNVFGI 239
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 102/190 (53%), Gaps = 22/190 (11%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P++ +++ ELIHARWAML G +IPEA N
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGY--GNW 68
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKLH 201
W T G Y G +P + ++A + D E + +
Sbjct: 69 VSAQKWAAT-----PGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQRNGESDPEKRKY 123
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSD 260
PGG FDP+G +K + LK+KEIKNGRLA+ A LGF +QA G GP+ENL HL+D
Sbjct: 124 PGGAFDPMGFSKGAN-LEELKLKEIKNGRLALVAFLGFAIQAIAYPGTGPLENLKTHLAD 182
Query: 261 PFANNLLTVI 270
P+ N + ++
Sbjct: 183 PWHNTIANIL 192
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 101/272 (37%), Positives = 135/272 (49%), Gaps = 44/272 (16%)
Query: 28 SAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY-GPDRRIFLPE 86
S +RT + PS+ + S++ A PA P SP +A G R +LP
Sbjct: 13 SVLRTH----TAPSSRQLAGWSSRRTLAMPAHHAP---SPRARVVAVRAAGTQRPTWLP- 64
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
GL + P +L G +PGD+G+DP GL + P Y EL+H R+AM G AG + +
Sbjct: 65 GL----DPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGVAGILFTDL 120
Query: 147 FNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAE-------------- 191
G + P VWF+ GA + NT F + L+ AE
Sbjct: 121 LRVSGNSDLP--VWFEAGAAKFEFANTTALFF----VQLLLMGFAETKRYMDFKNPGSQA 174
Query: 192 ---IVLDLEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
+ LE L +PGGP F+PLGLAKD + K+KEIKNGRLAM AMLGF +
Sbjct: 175 EEGTFIGLEAALAGQQPGYPGGPLFNPLGLAKDIENAHEEKLKEIKNGRLAMVAMLGFMV 234
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
QA VT GP++NL HLSDPF N++ S +
Sbjct: 235 QASVTHAGPIDNLLTHLSDPFNKNIIHAFSSS 266
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 135/261 (51%), Gaps = 49/261 (18%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
GDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 72 GDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAET 130
Query: 158 AV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA-------------------EIVLDLE 197
A+ WF+TG + G T Y+ N + ++ + + L LE
Sbjct: 131 ALPWFQTGVIPPAG-TYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLE 189
Query: 198 DKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG G
Sbjct: 190 KGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVG 249
Query: 250 PVENLAKHLSDPFANNLLTVI 270
P +NL HL+ P NN+LT +
Sbjct: 250 PYQNLLDHLAGPVNNNVLTSL 270
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 134/279 (48%), Gaps = 49/279 (17%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVA---VSPVNEELAKWYGPDR 80
LN +S+ +S P + K +L K + K + A VS V E L PDR
Sbjct: 3 LNFASSSLSSLPTRTRDKPQK--SLLGKIEKCQAVKVRVNATKGVSSVCEPLP----PDR 56
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
++ P S PE+L G +PGD+G+DP GL P+ + ELIH RWAML AAG
Sbjct: 57 PLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI---------AE 191
+IPE + G F D T YF + +V ++ A+
Sbjct: 112 ILIPEWLERLG---------FIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEGRRWAD 162
Query: 192 IV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
++ +D++ KL +PGG FDP + P+ ++ KEIKNGRLAM
Sbjct: 163 MIKPGCVDIDPKLPHKTKPKPDVGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAML 222
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
A +GF+ QA TGEGP++NL H++DP N+ + + +
Sbjct: 223 AFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
>gi|224034127|gb|ACN36139.1| unknown [Zea mays]
Length = 191
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 93/149 (62%), Gaps = 19/149 (12%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQ 59
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGAIEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 134/279 (48%), Gaps = 49/279 (17%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVA---VSPVNEELAKWYGPDR 80
LN +S+ +S P + K +L K + K + A VS V E L PDR
Sbjct: 3 LNFASSSLSSLPTRTRDKPQK--SLLGKIEKCQAVKVRVNATKGVSSVCEPLP----PDR 56
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
++ P S PE+L G +PGD+G+DP GL P+ + ELIH RWAML AAG
Sbjct: 57 PLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAG 111
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI---------AE 191
+IPE + G F D T YF + +V ++ A+
Sbjct: 112 ILIPEWLERLG---------FIDNFNWFDAGTREYFADPTTLFVVQLILMGWIEGRRWAD 162
Query: 192 IV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
++ +D++ KL +PGG FDP + P+ ++ KEIKNGRLAM
Sbjct: 163 MIKPGCVDIDPKLPHKTKPKPDIGYPGGLWFDPWNWGRGSPEPVMAIRTKEIKNGRLAML 222
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
A +GF+ QA TGEGP++NL H++DP N+ + + +
Sbjct: 223 AFVGFWFQAIYTGEGPIDNLMAHIADPGHCNIFSAFTSH 261
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 75/177 (42%), Positives = 100/177 (56%), Gaps = 23/177 (12%)
Query: 104 GDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT 163
GD+G+DP GL + P++ +Y+ ELIH RWAML G ++PEA FG W K
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALG-FGN-------WVKA 52
Query: 164 GALL-LDGNTLNYFGKNIP-------INLVFAVIA------EIVLDLEDKLHPGGPFDPL 209
+ G Y G +P + + F IA + D E + +PGG FDPL
Sbjct: 53 QEWAAVPGGQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKRKYPGGAFDPL 112
Query: 210 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANN 265
G +KDP +F LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ N
Sbjct: 113 GYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNK 169
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 82/216 (37%), Positives = 108/216 (50%), Gaps = 34/216 (15%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++LP SE P++L G +PGDYG+DP L+ +P + EL+H RWAMLGA
Sbjct: 13 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 67
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV----- 193
AG IPE K G P W+K G D G + L+ AE
Sbjct: 68 AGIFIPELLTKIGILNTPS--WYKAG----DATYFADQGTLFIVELLLMAWAESRRWADI 121
Query: 194 ----------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFA 235
L D +PGG FDPLG D+ ++ KE+KNGRLAM A
Sbjct: 122 ARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLA 181
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
+LG F+QA VT GP++NL HL+DP+ +L +S
Sbjct: 182 VLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSVS 217
>gi|388507164|gb|AFK41648.1| unknown [Lotus japonicus]
Length = 160
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 91/149 (61%), Gaps = 19/149 (12%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN----LVFAVIA 190
MLGA G + PE + G G EAVWFK G+ + L+Y G ++ LV
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILVIWATQ 59
Query: 191 EIVL--------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
I++ ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HLSDP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLSDPVNNN 148
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 100/267 (37%), Positives = 130/267 (48%), Gaps = 63/267 (23%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTG 100
S+ K + + +A PP K G DR+++ + YL G
Sbjct: 30 SSRKSASFVVRAEATPPVKQ----------------GADRQLWFAS-----KQSLSYLDG 68
Query: 101 EVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANC 154
+PGD+G+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE F G
Sbjct: 69 SLPGDFGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSLGL-I 126
Query: 155 GPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIA---------------------E 191
PE WFKTG + G T NY+ P L +A +
Sbjct: 127 PPETALPWFKTGVIPPAG-TYNYWAD--PYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQ 183
Query: 192 IVLDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 243
L LE D +PGGP F+PLG KD LK+KEIKNGRLAM A+LG+F+Q
Sbjct: 184 YFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQG 243
Query: 244 YVTGEGPVENLAKHLSDPFANNLLTVI 270
VTG GP +NL HLSDP NN+LT +
Sbjct: 244 LVTGVGPYQNLLDHLSDPVNNNVLTSL 270
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 140/272 (51%), Gaps = 33/272 (12%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
VS+ +S+ +N +T++ ++L K + PAKS+ + S R +
Sbjct: 10 FRVSALKDSSSIFTNNINTYQTLSL--NKVTSLPAKSRGIFHSHGRRLCTVVRAQQRPTW 67
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
LP GL + P YL G + GD+G+DP GL + P+ Y EL+H+R+AM G AG +
Sbjct: 68 LP-GL----DPPPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILF 122
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEIVLD------- 195
+ G + P VW++ GA NT F + + L+ V + +D
Sbjct: 123 TDLLRTTGLSNLP--VWYEAGATKFQFANTTTLF--IVQMLLMGFVETKRYMDFKNPGSQ 178
Query: 196 -------LEDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
LE L +PGGP +PLG+AKD K+KEIKNGRLAM A+LG F+
Sbjct: 179 GEASFFGLEAALEGLEPGYPGGPILNPLGIAKDIKNAPEWKLKEIKNGRLAMVAILGIFV 238
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
QA VT GP+ENL +HLSDP+ ++ ++S +
Sbjct: 239 QASVTHVGPLENLVEHLSDPWHTTIIQILSAS 270
>gi|308801082|ref|XP_003075322.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029299|gb|AAY27548.1| chloroplast light-harvesting complex I protein precursor Lhca1
[Ostreococcus tauri]
gi|116061876|emb|CAL52594.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 225
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 99/182 (54%), Gaps = 7/182 (3%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +L G++P DYG+DP L +KPD+ ++Y+ EL+HARWAM+G AG + E +
Sbjct: 38 AEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGVAGAVGVEIAGQGD 97
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDL---EDKLHPGGPFDP 208
W T L + F I +N V AE E +L+PGG FDP
Sbjct: 98 WASAQPTTWDATAKYLGNETHAPLFAV-IGVNGVLVAFAESQRQAATGEARLYPGGSFDP 156
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYV--TGEGPVENLAKHLSDPFANNL 266
GL+K D F LK KE+ NGR+AM A G Q +G GPV+ LA HL+DP+ N+
Sbjct: 157 AGLSKGKD-FETLKRKELANGRVAMMAFFGIMAQHQADPSGPGPVKQLANHLADPWHVNV 215
Query: 267 LT 268
T
Sbjct: 216 CT 217
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 108/217 (49%), Gaps = 34/217 (15%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++LP SE P++L G +PGDYG+DP L+ +P + EL+H RWAMLGA
Sbjct: 64 DRPLWLPG-----SEAPKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGA 118
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV----- 193
AG IPE K G P W+K G D G + L+ AE
Sbjct: 119 AGIFIPELLTKIGILNTPS--WYKAG----DATYFADQGTLFIVELLLMAWAESRRWADI 172
Query: 194 ----------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFA 235
L D +PGG FDPLG D+ ++ KE+KNGRLAM A
Sbjct: 173 ARPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSEDKLKEIRTKEVKNGRLAMLA 232
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 272
+LG F+QA VT GP++NL HL+DP+ +L + G
Sbjct: 233 VLGAFVQANVTHVGPIDNLFAHLADPYHTTILQSLFG 269
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 97/175 (55%), Gaps = 23/175 (13%)
Query: 103 PGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFK 162
PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G W K
Sbjct: 3 PGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-------WVK 54
Query: 163 TGALL-LDGNTLNYFGKNIPINLVFAVIAEIVL-------------DLEDKLHPGGPFDP 208
L G Y G +P + ++A L D E K +PGG FDP
Sbjct: 55 AQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDP 114
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPF 262
LG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+
Sbjct: 115 LGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 169
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 94/276 (34%), Positives = 134/276 (48%), Gaps = 49/276 (17%)
Query: 24 LNVSSAVRTSAPGASNPSTFKP--VALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
L++SS ++ P P A + ++ AK VS V E L PDR
Sbjct: 3 LSISSTALSTFPNTEKRHKVFPERTATWLPRRIHTNAKK---GVSDVCEPLP----PDRP 55
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
++ P S PE+L G +PGD+G+DP GL P+ EL+HARWAMLG +G
Sbjct: 56 LWFPG-----SSPPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGI 110
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI---------AEI 192
+IPE K G W++ G T YF + +V + A++
Sbjct: 111 LIPELLEKMGYV--ENYSWYEAG-------TQEYFADPTTLFIVQLALMGWVEGRRWADL 161
Query: 193 V----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFA 235
V +D+E KL +PGG FDP+ + P+ +L+ KEIKNGRLAM A
Sbjct: 162 VNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTKEIKNGRLAMLA 221
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
+GF+ QA TG+GP+ENL HL+DP N+ + +
Sbjct: 222 FVGFWFQAIYTGQGPIENLMAHLADPGHCNIFSAFT 257
>gi|242045514|ref|XP_002460628.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
gi|241924005|gb|EER97149.1| hypothetical protein SORBIDRAFT_02g032090 [Sorghum bicolor]
Length = 160
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/149 (49%), Positives = 93/149 (62%), Gaps = 19/149 (12%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ 59
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 119
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 120 FGFFVQAIVTGKGPLENLADHLADPVNNN 148
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 109/204 (53%), Gaps = 25/204 (12%)
Query: 78 PDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAML 136
P R + G L S+ P YL +P YG+DP GL+K+ +++ E+IH RWAML
Sbjct: 20 PRARTVMKAGNWLPGSDTPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAML 78
Query: 137 GAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL------VFAVIA 190
GAAG + E +G W+ L+ G + YFG +IP +L FA +A
Sbjct: 79 GAAGVLGVEVLG-YGN-------WYDAPLPLVQGGSATYFGASIPFDLGTLAAIEFAAMA 130
Query: 191 -----EIVLDLEDKLHPGGPFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 244
+ E +++PGGPFDP G++K + D+ L+ KEIKNGRLAM A LGF Q
Sbjct: 131 GAESFRGAAEPEKRVYPGGPFDPAGMSKGNQDE---LRTKEIKNGRLAMIACLGFVAQHA 187
Query: 245 VTGEGPVENLAKHLSDPFANNLLT 268
TG P+E L HL++P N T
Sbjct: 188 ATGASPLEALGAHLANPMVANFAT 211
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 141/290 (48%), Gaps = 55/290 (18%)
Query: 19 MLGNPLNVSSAVRTSAPGASN---PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKW 75
M L SS++ SA A P + + FS+K + K A PV +
Sbjct: 1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASF---LVKAAATPPVKQ----- 52
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELI 129
G DR ++ + YL G +PGDYG+DP GLS P+ K+ AY E+I
Sbjct: 53 -GSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEII 105
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAV 188
+ R+AMLGA G I PE K G A+ WF+TG G T NY+ + + VF +
Sbjct: 106 NGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-FVFEM 163
Query: 189 I--------------------AEIVLDLEDKL-------HPGGP-FDPLGLAKDPDQFAL 220
+ L LE L +PGGP F+PLG KD
Sbjct: 164 ALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKD 223
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 224 LKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/210 (40%), Positives = 113/210 (53%), Gaps = 33/210 (15%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
+YG +R FL G L+ E P +L G + GD G+DP L+ K +D +Y+ EL+H RWA
Sbjct: 31 FYGANRVKFL--GDLE-YEYPAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHGRWA 87
Query: 135 MLGAAGFIIPEAFNKFG-ANCGPEAVWFKTGALLLDGNT----LNYFGKNIPINLVFAVI 189
MLG G +PE ++FG AN G E VW+K GA ++ + L + G +I AVI
Sbjct: 88 MLGVVGAAVPETLDRFGVANLG-EPVWWKVGAAKMNSDIALDYLGFSGFHIAGGSGIAVI 146
Query: 190 AEIVLDLE-----------------------DKLHPGG-PFDPLGLAKDPDQFALLKVKE 225
A L L DK +PGG PFDP + D ++F KV E
Sbjct: 147 AACQLVLMGGPEYARYVGINSLEPVGVYLPGDKDYPGGAPFDPFKFSDDAEEFEKQKVME 206
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
IK+ RLAM A LG +QA VT +GP+ENLA
Sbjct: 207 IKHCRLAMIAALGCAIQAIVTRQGPIENLA 236
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 141/290 (48%), Gaps = 55/290 (18%)
Query: 19 MLGNPLNVSSAVRTSAPGASN---PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKW 75
M L SS++ SA A P + + FS+K + K A PV +
Sbjct: 1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASF---LVKAAATPPVKQ----- 52
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELI 129
G DR ++ + YL G +PGDYG+DP GLS P+ K+ AY E+I
Sbjct: 53 -GSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEII 105
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAV 188
+ R+AMLGA G I PE K G A+ WF+TG + T NY+ + + VF +
Sbjct: 106 NGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTG-FIPPAGTYNYWADSYTL-FVFEM 163
Query: 189 I--------------------AEIVLDLEDKL-------HPGGP-FDPLGLAKDPDQFAL 220
+ L LE L +PGGP F+PLG KD
Sbjct: 164 ALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKD 223
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 224 LKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 141/290 (48%), Gaps = 55/290 (18%)
Query: 19 MLGNPLNVSSAVRTSAPGASN---PSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKW 75
M L SS++ SA A P + + FS+K + K A PV +
Sbjct: 1 MAAQALVSSSSLTFSAEAARQSLGPRSLQSPFGFSRKASF---LVKAAATPPVKQ----- 52
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELI 129
G DR ++ + YL G +PGDYG+DP GLS P+ K+ AY E+I
Sbjct: 53 -GSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEII 105
Query: 130 HARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAV 188
+ R+AMLGA G I PE K G A+ WF+TG G T NY+ + + VF +
Sbjct: 106 NGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-FVFEM 163
Query: 189 I--------------------AEIVLDLEDKL-------HPGGP-FDPLGLAKDPDQFAL 220
+ L LE L +PGGP F+PLG KD
Sbjct: 164 ALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKD 223
Query: 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
LK+KE+KNGRLAM A+LG+F+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 224 LKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 119/253 (47%), Gaps = 46/253 (18%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
A + +K A++ P S A G RR++ P E P YL GE+ GDY
Sbjct: 13 AFLTGRKVVSKARAGPAPRSTFQVSAAASQG--RRLWAPG-----VEAPSYLNGELAGDY 65
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+DP GL KP+ Y+ EL+HARWAML AG + E V+F L
Sbjct: 66 GWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIVK--------PGVFFYNAGL 117
Query: 167 LLDGNTLNYFGKNIPINLVFAVIAEIVL----------DLEDK----------------- 199
+ +N+ G +NL + E +L D++ K
Sbjct: 118 PENLPGINFGGPEGKVNLGGLLAWEFLLFHWVEVRRWQDIKKKDSVNQDPIFKGNKVPNP 177
Query: 200 --LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
+PGG FDP G +K F ++ KEIKNGRLAM A +GF +QA TG+GP+ NL H
Sbjct: 178 ELGYPGGIFDPFGFSK--GNFKEVQTKEIKNGRLAMVAFVGFIIQAQATGQGPLANLGAH 235
Query: 258 LSDPFANNLLTVI 270
L++PF NN+ I
Sbjct: 236 LANPFGNNITKNI 248
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 113/209 (54%), Gaps = 38/209 (18%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 68 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 151 GANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVI-------------------- 189
G A+ WF+TG G T NY+ + + VF +
Sbjct: 127 GLIPQETALPWFRTGVFPPAG-TYNYWADSYTL-FVFEMALMGFAEHRRFQDWAKPGSMG 184
Query: 190 AEIVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
+ L LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+F+
Sbjct: 185 KQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFV 244
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLTVI 270
QA VTG GP +NL HL+DP NN+LT +
Sbjct: 245 QALVTGVGPYQNLLDHLADPVHNNILTSL 273
>gi|47026888|gb|AAT08668.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 237
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 94/169 (55%), Gaps = 22/169 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 36 WYGPDRVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 92
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 93 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 151
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 225
+VL ++ D L+PGG FDPLGLA DP FA LKV E
Sbjct: 152 VVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPKAFAELKVNE 200
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 104/201 (51%), Gaps = 30/201 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------------------IVLDL 196
P VW++ GA+ D + I + + AE L
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL---IVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGL 170
Query: 197 EDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
E L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+QA VT G
Sbjct: 171 EAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTG 230
Query: 250 PVENLAKHLSDPFANNLLTVI 270
P++NL +HLS+P+ ++ +
Sbjct: 231 PIDNLVEHLSNPWHKTIIQTL 251
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 104/201 (51%), Gaps = 30/201 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 48 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 107
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------------------IVLDL 196
P VW++ GA+ D + I + + AE L
Sbjct: 108 LP--VWYEAGAVKFDFASTKTL---IVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGL 162
Query: 197 EDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
E L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+QA VT G
Sbjct: 163 EAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTG 222
Query: 250 PVENLAKHLSDPFANNLLTVI 270
P++NL +HLS+P+ ++ +
Sbjct: 223 PIDNLVEHLSNPWHKTIIQTL 243
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 135/278 (48%), Gaps = 55/278 (19%)
Query: 27 SSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ AVR S S PS+ S+K A + PV V+ L W+ + +
Sbjct: 16 AEAVRQSFRARSLPSSVG----CSRKGLVRAAATPPVKQGGVDRPL--WFASKQSL---- 65
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAG 140
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGA G
Sbjct: 66 ---------SYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAVG 115
Query: 141 FIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA--------- 190
I PE K G A+ WF+TG + G T NY+ N + ++ +
Sbjct: 116 AIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADNYTLFVLEMALMGFAEHRRFQ 174
Query: 191 ----------EIVLDLEDKL-------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLA 232
+ L LE +PGGPF +PLG KD LK+KE+KNGRLA
Sbjct: 175 DWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLA 234
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
M A+LG+F+Q VTG GP +NL H++DP NN+LT +
Sbjct: 235 MLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVLTSL 272
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 103/201 (51%), Gaps = 30/201 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------------------IVLDL 196
P VW++ GA+ D I + + AE L
Sbjct: 116 LP--VWYEAGAVKFDFACTKTL---IVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGL 170
Query: 197 EDKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
E L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+QA VT G
Sbjct: 171 EAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTG 230
Query: 250 PVENLAKHLSDPFANNLLTVI 270
P++NL +HLS+P+ ++ +
Sbjct: 231 PIDNLVEHLSNPWHKTIIQTL 251
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 105/198 (53%), Gaps = 24/198 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G++ GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFKTGALLLD-----------------GNTLNYFGKNIPINLV----FAVIAEIV 193
P VW++ GA+ D T Y P + F E
Sbjct: 116 LP--VWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYVDYVSPGSQAKEGSFFFGIEAA 173
Query: 194 LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 252
L+ + +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+QA VT GP++
Sbjct: 174 LEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPID 233
Query: 253 NLAKHLSDPFANNLLTVI 270
NL +HLS+P+ ++ +
Sbjct: 234 NLVEHLSNPWHKTIIQTL 251
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 105/198 (53%), Gaps = 23/198 (11%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++LP + P +L G +PGDYGYDP GL+ PD + + E + RWAM G
Sbjct: 38 DRTLWLPN-----TVPPAHLNGTLPGDYGYDPIGLATDPDRLAWFVEAERTNGRWAMAGV 92
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLED 198
AG + +A + A WF GA L + + +G ++F + L+
Sbjct: 93 AGILFTDALHI------GSAPWFSIGAEL--ESPIPLWGLATIEFVIFGFLEMKRLEGWK 144
Query: 199 KLHPGG-----PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 253
K G PFDPLG+ + VKE+KNGRLAMFA GF +QA VT EGPV N
Sbjct: 145 KTGQNGLLNWFPFDPLGMNSKE-----MMVKEVKNGRLAMFAWCGFMVQALVTREGPVTN 199
Query: 254 LAKHLSDPFANNLLTVIS 271
L KH++DPF NN +T I+
Sbjct: 200 LEKHIADPFNNNFITSIA 217
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 101/197 (51%), Gaps = 35/197 (17%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YL G + GDYG+DP GL P+ + Y+ EL +ARWAMLG AG + E N
Sbjct: 46 PKYLDGNLAGDYGFDPMGLGANPERLTWYRQAELQNARWAMLGVAGILGQEIIN------ 99
Query: 155 GPEAVWFKTGA----LLLDGNTLNYFGKNIPINLVFAVIAEI--VLDLEDKL-------- 200
PE W+ G DGN +N G + + E+ D+ K
Sbjct: 100 -PEQWWYSAGMPENLPSFDGNKVN-MGGILAWEFLLMHFVEVRRWQDIRKKDSVNADPFN 157
Query: 201 -----------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
+PGGPFDPLG +K F ++ KEIKNGRLAM A + F +QA TG+G
Sbjct: 158 PNLKVPNPEMGYPGGPFDPLGFSK--GNFKEVQTKEIKNGRLAMVAFVAFTIQAQATGKG 215
Query: 250 PVENLAKHLSDPFANNL 266
P+ NL HL+ PF+NN+
Sbjct: 216 PLANLTDHLASPFSNNV 232
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 117/227 (51%), Gaps = 30/227 (13%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 44 GVSAVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWF 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA--LLLDGNTLNYFGKNIP 181
EL+HARWAML G ++PE K G W+ GA +D TL +
Sbjct: 95 AQAELMHARWAMLAVFGILVPELLEKIGYI--ENFSWYDAGAREYFVDPTTLFVVQMGLM 152
Query: 182 INLVFAVIAEIV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 224
+ A++V +D+E K+ +PGG FDP+ + P+ +L+ K
Sbjct: 153 GWVEGRRWADMVNPGSVDIEPKVPHITNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 212
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
EIKNGRLAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 213 EIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 126/245 (51%), Gaps = 49/245 (20%)
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
K A+ PV + G DR ++ + YL G +PGDYG+DP GLS P+
Sbjct: 43 KAAAIPPVKQ------GSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGLS-DPEGT 90
Query: 121 S-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTL 173
K+ AY E+I+ R+AMLGA G I PE K G A+ WF+TG G T
Sbjct: 91 GGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPAG-TY 149
Query: 174 NYFGKNIPINLVF--------------------AVIAEIVLDLEDKL-------HPGGP- 205
NY+ + + VF ++ + L LE L +PGGP
Sbjct: 150 NYWADSYTL-FVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYPGGPF 208
Query: 206 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
F+PLG KD LK+KE+KNGRLAM A+LG+F++A VTG GP +NL HL+DP NN
Sbjct: 209 FNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVRALVTGVGPYQNLLDHLADPVHNN 268
Query: 266 LLTVI 270
+LT +
Sbjct: 269 ILTSL 273
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 127/259 (49%), Gaps = 44/259 (16%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYL 98
+ F+P A S+ A P+K ++ +++ P+ P ++ +G L P YL
Sbjct: 11 AVFRPCAYKSRFLAGAPSKLNRELSIKPMASS-----SPSFKVEAKKGEWLPGLPSPSYL 65
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158
G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G P+
Sbjct: 66 NGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ- 124
Query: 159 VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV------------------------L 194
W+ D YF + + ++ ++ V L
Sbjct: 125 -WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSL 176
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
+ +PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP ENL
Sbjct: 177 PPNECGYPGGIFNPLNFAPTIEA----KEKELANGRLAMLAFLGFVIQHNVTGKGPFENL 232
Query: 255 AKHLSDPFANNLLTVISGN 273
+H+SDP+ N ++ SGN
Sbjct: 233 LQHISDPWHNTIVQTFSGN 251
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 104/201 (51%), Gaps = 30/201 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+H+R+AMLG AG + + G
Sbjct: 56 PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRN 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------------------IVLDL 196
P VW++ GA+ D + I + + AE +
Sbjct: 116 LP--VWYEAGAVKFDFASTKTL---IVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGI 170
Query: 197 EDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
E L +PGGP +PLGLAKD K+KEIKNGRLAM AMLGFF+QA VT G
Sbjct: 171 EAALEGLEPGYPGGPLLNPLGLAKDVKNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTG 230
Query: 250 PVENLAKHLSDPFANNLLTVI 270
P++NL +HLS+P+ ++ +
Sbjct: 231 PIDNLVEHLSNPWHXTIIQTL 251
>gi|544700|gb|AAB29485.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 221
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/192 (39%), Positives = 103/192 (53%), Gaps = 25/192 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G P P GL+ P++F +++ E+ H RWAML G ++PEA
Sbjct: 31 PAHLAGSSPRGLRVRPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGL----- 85
Query: 155 GPEAVWFKTG--ALLLDGNTLNYFGKNIP-------INLVFAVIA------EIVLDLEDK 199
W K A L DG Y G +P + + F IA + D E K
Sbjct: 86 ---GNWVKAQEWAALPDGQA-TYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKK 141
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHL 258
+PGG FDPLG +KDP +F LK+KEIKNGRLAM A +GF + Q+ G GP+ENLA HL
Sbjct: 142 KYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHL 201
Query: 259 SDPFANNLLTVI 270
+DP+ NN+ ++
Sbjct: 202 ADPWHNNIGDIV 213
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 119/244 (48%), Gaps = 48/244 (19%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+ VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 KAAKSGVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPE 93
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
+ EL+HARWAML AG ++PE F G W+ D + YF
Sbjct: 94 TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLI--QNFSWY-------DAGSREYFAD 144
Query: 179 NIPINLVFAVIA-----------------EIVLDLE---------DKLHPGG-PFDPLGL 211
P L+ A +A + +DL+ D +PGG FDP+
Sbjct: 145 --PTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAMADVGYPGGFWFDPMMW 202
Query: 212 AK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
+ P+ +L+ KEIKNGRLAM A +G + QA TG+GP+ENLA H++DP N+ +
Sbjct: 203 GRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF 262
Query: 271 SGNA 274
S +
Sbjct: 263 SSGS 266
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/217 (38%), Positives = 106/217 (48%), Gaps = 34/217 (15%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S P +L G +PGD+G+DPFGL P+ EL+H RWAMLG
Sbjct: 55 PDRPIWFPG-----SVPPPWLDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLG 109
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G +T F I L+ AE
Sbjct: 110 AAGIFIPEFLTKIGILSTPS--WYTAGEQQYFTDTTTLF----IIELILIGWAEGRRWAD 163
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG P++ L+ KEIKNGRLAM
Sbjct: 164 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKLKELRTKEIKNGRLAML 223
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
A++G + QA TG GP++NL HL+DP N+ +
Sbjct: 224 AVMGAWFQAEYTGTGPIDNLFAHLADPGHANIFQAFT 260
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/255 (36%), Positives = 126/255 (49%), Gaps = 52/255 (20%)
Query: 50 SKKKAAPPAKSKPVAVSPVNE-ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
S ++ + +S+ + PV + + W+ D+ + YL G +PGDYG+
Sbjct: 43 SSRRTSFTVRSQASSNKPVKQGDRQLWFASDQSL-------------SYLDGSLPGDYGF 89
Query: 109 DPFGLS--KKPDDFSK--YQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFK 162
DP GL + P F + + Y E+I+ R+AMLGA G I PE K G A+ WF+
Sbjct: 90 DPLGLMDPEGPGGFMEPGWLVYGEIINGRYAMLGAVGAIAPEILGKLGLIPQETALPWFQ 149
Query: 163 TGALLLDGNTLNYFGKNIPINLVFAVIA---------------------EIVLDLEDKL- 200
TG + G T NY+ P L +A + L LE L
Sbjct: 150 TGVIPPAG-TYNYWAD--PFTLFVLEMALMGFAEHRRLQDYRNPGSMGKQYFLGLEKFLG 206
Query: 201 ------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 253
+PGGP F+PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG GP +N
Sbjct: 207 GSGNPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQN 266
Query: 254 LAKHLSDPFANNLLT 268
L HL+DP NN LT
Sbjct: 267 LLDHLADPVHNNFLT 281
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 111/214 (51%), Gaps = 39/214 (18%)
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY-----QAY-ELIHARWAMLGAAG 140
G+ D+S YL G +PGDYG+DP GLS P+ + AY E+IH RWAMLG AG
Sbjct: 69 GVSDQSL--SYLDGTLPGDYGFDPLGLSD-PEGAGGFINPGWLAYAEVIHGRWAMLGVAG 125
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV------- 193
PE F + VWFK G + G + +++ + V + V
Sbjct: 126 ATAPETMKGFIPDS-TAVVWFKNGIIPAQG-SYDFWAPPTALFWVMVCMMNFVEINRLTE 183
Query: 194 ------------LDLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
LE + +PGG F+P+G+ K+ +KVKEIKNGRLAM
Sbjct: 184 YANPGFRTKQSLAGLEKGMGGTGNPAYPGGSFNPMGMGKN--DMDAMKVKEIKNGRLAMM 241
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
A G +QA +TGEGPV+NL H++DPFA+NLLT
Sbjct: 242 AFFGIMVQAIITGEGPVKNLTDHVTDPFAHNLLT 275
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 103/196 (52%), Gaps = 18/196 (9%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL----VFAVIAEIVLD 195
G + E W+ ++G +FG +P +L F +A +
Sbjct: 91 GSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 142
Query: 196 LEDKLH-----PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+ + PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q TG+ P
Sbjct: 143 GQRRRCRRRRLPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKAP 202
Query: 251 VENLAKHLSDPFANNL 266
+ L +HL++P+A L
Sbjct: 203 LAALGEHLANPWAPTL 218
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 102/202 (50%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F KFG
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 123 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 174 QYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFIVQHNVTGKGP 229
Query: 251 VENLAKHLSDPFANNLLTVISG 272
ENL +HLSDP+ N ++ I G
Sbjct: 230 FENLLQHLSDPWHNTIINTIRG 251
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 113/211 (53%), Gaps = 30/211 (14%)
Query: 73 AKWYGPDRRIFLPEGLLDR----SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
A YG RR FLP+ LL + +P YLTGE+PGD G+DP + + D +K + EL
Sbjct: 1313 ADLYGTTRRKFLPDSLLASLGPSTVVPAYLTGELPGDVGWDPLQMGAQ-RDLTKLREREL 1371
Query: 129 IHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-----LDGNTLNYFGKNIP-- 181
IH RWAML A G + PE K G P + W+ T L G L Y G+ IP
Sbjct: 1372 IHGRWAMLAAVGVLTPELTAKLGVFGAPGSHWWNTAINFPTEGGLAGAELTYLGETIPFG 1431
Query: 182 ------INLVFAVIAEIV----LDLE-----DKLHPGGP-FDPLGLAKDPDQFAL--LKV 223
I+L +AE++ ++E D+++PGG FDPLG+ +D D+ L LK
Sbjct: 1432 LFWLPIIHLPVFFVAEMLRTGKYEVERFRGLDRMYPGGSLFDPLGIGRDIDETELKVLKT 1491
Query: 224 KEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
EI + RLAM A GF ++A + G GP++ L
Sbjct: 1492 IEINHCRLAMTASFGFIVEAALWGAGPLDWL 1522
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 119/244 (48%), Gaps = 48/244 (19%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
K+ VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 43 KAAKSGVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPE 93
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
+ EL+HARWAML AG ++PE F G W+ D + YF
Sbjct: 94 TLKWFAQAELMHARWAMLAVAGILLPEWFESLGLI--QNFSWY-------DAGSREYFAD 144
Query: 179 NIPINLVFAVIA-----------------EIVLDLE---------DKLHPGG-PFDPLGL 211
P L+ A +A + +DL+ D +PGG FDP+
Sbjct: 145 --PTTLLVAQLALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAKADVGYPGGFWFDPMMW 202
Query: 212 AK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
+ P+ +L+ KEIKNGRLAM A +G + QA TG+GP+ENLA H++DP N+ +
Sbjct: 203 GRGSPEPVMVLRTKEIKNGRLAMLAFVGLWFQAIYTGQGPLENLAAHVADPGHCNIFSAF 262
Query: 271 SGNA 274
S +
Sbjct: 263 SSGS 266
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 94/260 (36%), Positives = 131/260 (50%), Gaps = 47/260 (18%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVP 103
KPVA S+KK++ K+ A PV + G +R ++ S+ YL G +P
Sbjct: 25 KPVASASQKKSSFVVKA--AATPPVKQ------GANRPLWFAS-----SQSLSYLDGSLP 71
Query: 104 GDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157
GDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 72 GDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAET 130
Query: 158 AVWFKTGALLLDGNTLNYFGKNIPINLVFAVI-------------------AEIVLDLED 198
A+ ++ T Y+ N + ++ + + L LE
Sbjct: 131 ALPXXQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEK 190
Query: 199 KL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG GP
Sbjct: 191 GLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGP 250
Query: 251 VENLAKHLSDPFANNLLTVI 270
+NL HL+DP NN+LT +
Sbjct: 251 YQNLLDHLADPVNNNVLTSL 270
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 112/229 (48%), Gaps = 30/229 (13%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 42 GVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWF 92
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI- 182
EL+H+RWAML AG +IPE + G W+ GA + F + +
Sbjct: 93 AQAELMHSRWAMLAVAGILIPECLERLGFI--ENFSWYDAGAQEFFADPTTLFVVQLALM 150
Query: 183 ---------NLVFAVIAEIVLDLEDKL-------HPGG-PFDPLGLAK-DPDQFALLKVK 224
+L+ +I L +K +PGG FDP + P+ +L+ K
Sbjct: 151 GWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTK 210
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
EIKNGRLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 211 EIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFTSQ 259
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/203 (38%), Positives = 109/203 (53%), Gaps = 27/203 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD+G+DP GL + P++ Y EL+HAR+AM G AG ++ + G +
Sbjct: 66 PPYLNGTLAGDFGFDPLGLGEDPENLRWYVQAELVHARFAMAGVAGILVTDLLRVTGISN 125
Query: 155 GPEAVWFKTGA---------------LLLDG--NTLNYF-----GKNIPINLVFAVIAEI 192
P VW++ GA L+L G T Y G F + E
Sbjct: 126 LP--VWYEAGAVKFEFASTEALFIVQLILMGFVETKRYMDFTNPGSQAKEGSFFGL--EA 181
Query: 193 VLDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
L+ + +PGGP +PLGLA+D K+KEIKNGRLAM AMLG F+QA VT GP+
Sbjct: 182 ALEGLEPGYPGGPLLNPLGLARDIKNAHDWKLKEIKNGRLAMVAMLGVFVQASVTHAGPI 241
Query: 252 ENLAKHLSDPFANNLLTVISGNA 274
ENL +HLS+P+ ++ IS +
Sbjct: 242 ENLVEHLSNPWHKTIIQTISSTS 264
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 105/207 (50%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL+ P+ Q EL+H RWAMLG
Sbjct: 64 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLG 118
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G L +T F + L+F AE
Sbjct: 119 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF----IVELIFIGWAEGRRWAD 172
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG P++ L+ KEIKNGRLAM
Sbjct: 173 ILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 232
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + Q TG GP++NL HL+DP
Sbjct: 233 AVMGAWFQHIYTGTGPIDNLFAHLADP 259
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 114/224 (50%), Gaps = 32/224 (14%)
Query: 52 KKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPF 111
K +A PA +KPV+ + KWY ++ P YL G +PGDYGYDP
Sbjct: 26 KASAKPAGAKPVSTVVRADLGKKWY-------------TGAKPPAYLDGSMPGDYGYDPL 72
Query: 112 GLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL---- 167
+ P+ YQ E+ + RWAM+G AG + +A +FG + P+ W++ GA+
Sbjct: 73 RMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGISDLPD--WYEAGAVAQASS 130
Query: 168 -LDGNTLNYFGKNIPINL-VFAVIAEIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKE 225
D TL I I + VFA + + K G D +G+ PD +++KE
Sbjct: 131 PFDLQTL------IAIEIFVFATVEGFRISTWKKTGKPGFLDIMGM-DSPD----MRLKE 179
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 269
IKNGRLAMFA +GF Q +V G GPVE L HL +P NN+ +
Sbjct: 180 IKNGRLAMFAFVGFVAQYFVNGMGPVEGLLNHLENPQQNNVFST 223
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/236 (35%), Positives = 111/236 (47%), Gaps = 44/236 (18%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 80 GVSTVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWF 130
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
EL+H+RWAML AG +IPE G F D YF +
Sbjct: 131 AQAELMHSRWAMLAVAGILIPEWLESLG---------FIENYNWFDAGAREYFADPTTLF 181
Query: 184 LVFAVIAEIV-------------LDLEDKL-----------HPGG-PFDPLGLAK-DPDQ 217
+V V+ V +D+E L +PGG FDPL + P+
Sbjct: 182 IVQLVLMGWVEGRRWADMIKPGCVDIEPTLPNKTKPKPDVGYPGGLWFDPLMWGRGSPEP 241
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
+L+ KEIKNGRLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 242 VMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHIADPGHCNIFSAFTSQ 297
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 107/201 (53%), Gaps = 29/201 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P++L G + GD+G+DP L K P+ Y EL+H+R+AM G AG ++ + G
Sbjct: 53 PQHLDGSLAGDFGFDPLELGKDPETLRWYVQAELVHSRFAMAGIAGILVTDLLRTVGGRD 112
Query: 155 GPEAVWFKTGA---------------LLLDG--NTLNYFGKNIPINLVFAVIAEIVLDLE 197
P VW++ GA L+L G T Y+ P + + L E
Sbjct: 113 LP--VWYEAGATEFEFADTRTLFVVQLILMGYAETRRYYDYISPGS---QAAQDTFLGFE 167
Query: 198 DKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
D L +PGGPF DP GL +D + LK KE+KNGRLAM A+LG F+QA+ T GP
Sbjct: 168 DALAGLQSGYPGGPFFDPAGLGRDINNARTLKEKELKNGRLAMVAILGVFVQAFFTKTGP 227
Query: 251 VENLAKHLSDPFANNLLTVIS 271
++NL H+SDP+ N ++ +S
Sbjct: 228 IDNLLTHVSDPWHNTIVQTLS 248
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 115/237 (48%), Gaps = 45/237 (18%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K KA+ PA S+ A+ V A P+R I+ P S PE+L G +PGD+G+DP
Sbjct: 27 KNKASVPAVSRSAAL--VRAVAAD---PERPIWFPG-----STPPEWLDGSLPGDFGFDP 76
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GLS PD EL+H RWAMLGAAG IPE K G P W+ G
Sbjct: 77 LGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAG------ 128
Query: 171 NTLNYFGKNIPINLVFAVI---------AEIV---------------LDLEDKLHPGG-P 205
YF + +V ++ A+I+ L D +PGG
Sbjct: 129 -EQEYFTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLW 187
Query: 206 FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
FDPLG P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 188 FDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 116/227 (51%), Gaps = 30/227 (13%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 44 GVSAVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWF 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA--LLLDGNTLNYFGKNIP 181
EL+H+RWAML G ++PE + G W+ G +D TL +
Sbjct: 95 AQAELMHSRWAMLAVFGILVPELLERIGYI--ENFSWYDAGTREYFVDPTTLFVVQMGLM 152
Query: 182 INLVFAVIAEIV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 224
+ A+IV +D+E K+ +PGG FDP+ + P+ +L+ K
Sbjct: 153 GWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 212
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
EIKNGRLAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 213 EIKNGRLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 130/271 (47%), Gaps = 54/271 (19%)
Query: 37 ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
P + P FS + A K + PV + G DR+++ +
Sbjct: 19 GGRPVQWTPTRSFSSSRKASFV-VKAASTPPVKQ------GADRQLWFAS-----KQSLS 66
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLG AG I PE K
Sbjct: 67 YLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKL 125
Query: 151 GANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------ 190
G PE WF+TG + G T +Y+ P L +A
Sbjct: 126 GL-IPPETALPWFQTGVIPPAG-TYSYWAD--PYTLFVLEMALMGFAEHRRFQDWAKPGS 181
Query: 191 ---EIVLDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
+ L E D +PGGP F+PLG KD LK+KE+KNGRLAM A+LGF
Sbjct: 182 MGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAILGF 241
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 242 FIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 272
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 98/287 (34%), Positives = 129/287 (44%), Gaps = 55/287 (19%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKS 60
MAS ASST AA V+ + +S S T K L ++ +
Sbjct: 1 MASACASSTIAA-------------VAFSSPSSRRNGSIVGTTKASFLGGRRLRVSKYST 47
Query: 61 KPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF 120
P A S +A PDR ++ P S P +L G +PGD+G+DP GL+ P+
Sbjct: 48 TPTARSATTVCVAA--DPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESL 100
Query: 121 SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNI 180
Q EL+H RWAMLGAAG IPE K G P W+ G YF
Sbjct: 101 RWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPS--WYTAGE-------QEYFTDTT 151
Query: 181 PINLVFAVI---------AEIV---------------LDLEDKLHPGG-PFDPLGLAK-D 214
+ +V V+ A+I+ L D +PGG FDPLG
Sbjct: 152 TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 211
Query: 215 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 212 PAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 124/263 (47%), Gaps = 42/263 (15%)
Query: 26 VSSAVRTSA----PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRR 81
VS++ T+A PGA+ S+F A S + A+S S A PDR
Sbjct: 4 VSASSSTTAVAALPGAARASSFLGGAGRSGRLLLRQAESSSARASFAVRAAA----PDRP 59
Query: 82 IFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGF 141
I+ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLGAAG
Sbjct: 60 IWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGI 114
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------IV-- 193
IPE K G P W+ G +T F I L+ AE I+
Sbjct: 115 FIPEFLTKIGILNTPS--WYTAGEQQYFTDTTTLF----IIELILIGWAEGRRWADIIKP 168
Query: 194 -------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLG 238
L D +PGG FDPLG P++ L+ KEIKNGRLAM A++G
Sbjct: 169 GCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGTGSPEKIKELRTKEIKNGRLAMLAVMG 228
Query: 239 FFLQAYVTGEGPVENLAKHLSDP 261
+ QA TG GP++NL HL+DP
Sbjct: 229 AWFQAEYTGTGPIDNLFAHLADP 251
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 127/259 (49%), Gaps = 44/259 (16%)
Query: 41 STFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPEG-LLDRSEIPEYL 98
+ F+P A S+ A P+K ++ +++ P+ P ++ +G L P YL
Sbjct: 11 AVFRPCAYKSRFLAGAPSKLNRELSIKPMASS-----SPSFKVEAKKGEWLPGLPSPSYL 65
Query: 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158
G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G P+
Sbjct: 66 NGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQ- 124
Query: 159 VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV------------------------L 194
W+ D YF + + ++ ++ V L
Sbjct: 125 -WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSL 176
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
+ +PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP +NL
Sbjct: 177 PPNECGYPGGIFNPLNFAPTIEA----KEKELANGRLAMLAFLGFVIQHNVTGKGPFDNL 232
Query: 255 AKHLSDPFANNLLTVISGN 273
+H+SDP+ N ++ SGN
Sbjct: 233 LQHISDPWHNTIVQTFSGN 251
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 115/213 (53%), Gaps = 36/213 (16%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPE 145
S+ YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE
Sbjct: 60 SQSLTYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPE 118
Query: 146 AFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA-------------- 190
K G A+ WF+TG + G T +Y+ N + ++ +
Sbjct: 119 ILGKAGLIPAETALPWFQTGVIPPAG-TYSYWADNYTLFVLEMALMGFAEHRRLQDWYNP 177
Query: 191 -----EIVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAML 237
+ L LE +PGGP F+PLG K+ LK+KEIKNGRLAM A+L
Sbjct: 178 GSMGKQYFLGLEKGFSGSGEPAYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAIL 237
Query: 238 GFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
G+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 238 GYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 105/201 (52%), Gaps = 29/201 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG AG + + G
Sbjct: 70 PPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAELVHARFAMLGIAGILFTDLLRVTGIRK 129
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI-----------------VLDLE 197
P VW++ GA+ + + + + L++ AE +E
Sbjct: 130 LP--VWYEAGAVKYEFASTRTL---LVVQLLWMGYAETRRYMDYVSPGSQNKEGSFFGME 184
Query: 198 DKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L +PGGP +P GLAKD K+KEIKNGRLAM AMLG F+QA VT GP
Sbjct: 185 AALEGLEPGYPGGPLLNPFGLAKDIRSARDWKLKEIKNGRLAMVAMLGIFVQAAVTHTGP 244
Query: 251 VENLAKHLSDPFANNLLTVIS 271
++NL +HLSDP+ ++ +S
Sbjct: 245 IDNLLEHLSDPWHKTIIQTLS 265
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 103/210 (49%), Gaps = 40/210 (19%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S PE+L G +PGD+G+DP GLS PD EL+H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCRWAMLG 104
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI-------- 189
AAG IPE K G P W+ G YF + +V ++
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVVELILIGWAEGRR 155
Query: 190 -AEIV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRL 231
A+I+ L D +PGG FDPLG P + L+ KEIKNGRL
Sbjct: 156 WADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRL 215
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
AM A++G + Q TG GP++NL HL+DP
Sbjct: 216 AMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 130/271 (47%), Gaps = 54/271 (19%)
Query: 37 ASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
P + P FS + A K + PV + G DR+++ +
Sbjct: 19 GGRPVQWTPSRSFSSSRKASFV-VKAASTPPVKQ------GADRQLWFAS-----KQSLS 66
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLG AG I PE K
Sbjct: 67 YLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKL 125
Query: 151 GANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------ 190
G PE WF+TG + G T +Y+ P L +A
Sbjct: 126 GL-IPPETALPWFQTGVIPPAG-TYSYWAD--PYTLFVLEMALMGFAEHRRFQDWAKPGS 181
Query: 191 ---EIVLDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
+ L E D +PGGP F+PLG KD LK+KE+KNGRLAM A+LGF
Sbjct: 182 MGKQYFLGFEKFLGGSGDPAYPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGF 241
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 242 FIQGLVTGVGPFQNLLDHLADPVNNNVLTSL 272
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 130/278 (46%), Gaps = 52/278 (18%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
++ VR + + PS VA + +A + VS V E L GPDR ++
Sbjct: 11 CSIQPRVRAALRAPTLPSQNAAVARMAGHRAG----ATKGGVSAVCEPL----GPDRPLW 62
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
P S P +L G +PGD+G+DP GL P+ + EL+H+RWAML AAG ++
Sbjct: 63 FPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAGILV 117
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI----------- 192
PE K+G F +D +YF P L + +A +
Sbjct: 118 PEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTLFVSQMALMGWAEGRRWADY 166
Query: 193 ----VLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFA 235
+ +E +L +PGG FD + P+ +L+ KEIKNGRLAM A
Sbjct: 167 LNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLA 226
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
+GF+ QA TGEGP++NL HL+DP N+ + + +
Sbjct: 227 FVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 112/227 (49%), Gaps = 30/227 (13%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 12 GVSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLRWF 62
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI- 182
EL+H+RWAML AG +IPE + G W+ GA + F + +
Sbjct: 63 AQAELMHSRWAMLAVAGILIPECLERLGFI--ENFSWYDAGAQEFFADPTTLFVVQLALM 120
Query: 183 ---------NLVFAVIAEIVLDLEDKL-------HPGG-PFDPLGLAK-DPDQFALLKVK 224
+L+ +I L +K +PGG FDP + P+ +L+ K
Sbjct: 121 GWVEGRRWADLINPGCVDIQLTFPNKAKPKPDVGYPGGLWFDPFMWGRGSPEPVMVLRTK 180
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
EIKNGRLAM A +GF QA TGEGP+ENL H++DP N+ + +
Sbjct: 181 EIKNGRLAMLAFVGFCFQAIYTGEGPIENLMAHIADPGHCNVFSAFT 227
>gi|16930763|gb|AAL32041.1|AF439282_1 chl a/b-binding protein [Retama raetam]
Length = 99
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/100 (71%), Positives = 78/100 (78%), Gaps = 7/100 (7%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFS---KKKAAPP 57
MASLAAS T A S+G EMLGNP+N+S R AP SNP+TFK VALFS KKKAAPP
Sbjct: 1 MASLAAS-TAAGSLGMSEMLGNPINLSGVTRL-APSPSNPATFKTVALFSNFNKKKAAPP 58
Query: 58 AKSKPVA--VSPVNEELAKWYGPDRRIFLPEGLLDRSEIP 95
K KP A VSP ++ELAKWYGPDRRIFLP+GLLDRSEIP
Sbjct: 59 PKQKPAAAAVSPADDELAKWYGPDRRIFLPDGLLDRSEIP 98
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 104/213 (48%), Gaps = 35/213 (16%)
Query: 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYE 127
V E WY IF LL + P+YL G + GDYG+DP GL P+ YQ E
Sbjct: 32 VFAERKLWYEFSFSIFF---LLPNIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAE 88
Query: 128 LIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFA 187
L++ARWAM+ AG EA G ++ W+ G +Y PIN A
Sbjct: 89 LMNARWAMMAVAGICTTEAL-------GIQSKWYMAG-------QEDY---GFPINAQLA 131
Query: 188 VIAEIVLDLEDKLHPGG------------PFDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
V+ + LE K G PFDPLG+ D D +K+KEIKNGR AM A
Sbjct: 132 VLFPTMGFLETKRITGWLATGKSGINETFPFDPLGMGADSDS---MKLKEIKNGRAAMIA 188
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
+G +QA V EGP+ L H+++PF NNL T
Sbjct: 189 FVGICVQALVLREGPLAALQDHVANPFGNNLAT 221
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 101/202 (50%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F K G
Sbjct: 63 PTYLNGTLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 123 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 174 QYSLPQHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFIVQHNVTGKGP 229
Query: 251 VENLAKHLSDPFANNLLTVISG 272
ENL +HLSDP+ N ++ I G
Sbjct: 230 FENLLQHLSDPWHNTIINTIRG 251
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 103/210 (49%), Gaps = 40/210 (19%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI-------- 189
AAG IPE K G P W+ G YF + +V ++
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVVELILIGWAEGRR 155
Query: 190 -AEIV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRL 231
A+I+ L D +PGG FDPLG P + L+ KEIKNGRL
Sbjct: 156 WADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRL 215
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
AM A++G + Q TG GP++NL HL+DP
Sbjct: 216 AMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|222618804|gb|EEE54936.1| hypothetical protein OsJ_02493 [Oryza sativa Japonica Group]
Length = 207
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 90/151 (59%), Gaps = 19/151 (12%)
Query: 133 WAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA 190
WAMLGA G + PE + G G EAVWFK G+ + L+Y G I + A+ A
Sbjct: 46 WAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA 104
Query: 191 -EIVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
++VL ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF
Sbjct: 105 VQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMF 164
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
+M GFF+QA VTG+GP + L+DP NN
Sbjct: 165 SMFGFFVQAIVTGKGPPREPRRPLADPVNNN 195
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 130/285 (45%), Gaps = 49/285 (17%)
Query: 1 MASLAASSTPAA-SIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAK 59
MAS+ ASS AA SI + + + +T S ++F KK P
Sbjct: 1 MASVCASSAIAAVSISSSRQV-------LSQKTGFLVGSTKASFLSGKKLRLKKYTAPTA 53
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
++ V V + PDR ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 54 ARSVTVCVAAD-------PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPET 101
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
EL+H RWAMLGAAG IPE K G P W+ G L +T F
Sbjct: 102 LRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF--- 156
Query: 180 IPINLVFAVIAE------IV---------------LDLEDKLHPGG-PFDPLGLAK-DPD 216
+ L F AE I+ L D +PGG FDPLG P+
Sbjct: 157 -IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 215
Query: 217 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 216 KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 260
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 103/210 (49%), Gaps = 40/210 (19%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 50 PDRPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 104
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI-------- 189
AAG IPE K G P W+ G YF + +V ++
Sbjct: 105 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVVELILIGWAEGRR 155
Query: 190 -AEIV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRL 231
A+I+ L D +PGG FDPLG P + L+ KEIKNGRL
Sbjct: 156 WADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRL 215
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
AM A++G + Q TG GP++NL HL+DP
Sbjct: 216 AMLAVMGAWFQHIYTGTGPIDNLFAHLADP 245
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 131/271 (48%), Gaps = 46/271 (16%)
Query: 28 SAVRTSAPGASNPSTFKPVALFSKKKAAPPAK-SKPVAVSPVNEELAKWYGPDRRIFLPE 86
+ V T A A F+P A S+ + P+K ++ VA P++ A + ++
Sbjct: 2 ATVTTQASAA----VFRPCASKSRFLSGSPSKLNREVAFKPMSSSPASFKVEAKKGEWLP 57
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
GL P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE
Sbjct: 58 GLPS----PAYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEV 113
Query: 147 FNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV------------- 193
F K G P+ W+ D YF + + ++ ++ V
Sbjct: 114 FTKIGIINVPK--WY-------DAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 164
Query: 194 -----------LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQ 242
L + +PGG F+PL A + K KE+ NGRLAM A LGF +Q
Sbjct: 165 VNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTLEA----KEKELANGRLAMLAFLGFVIQ 220
Query: 243 AYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
VTG+GP +NL +HLSDP+ N ++ SGN
Sbjct: 221 HNVTGKGPFDNLLQHLSDPWHNTIIQTFSGN 251
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 112/232 (48%), Gaps = 44/232 (18%)
Query: 55 APPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 114
AP A ++ VS + P+R ++ P S P +L G +PGD+G+DP GL
Sbjct: 48 APAAGTRSFTVSAAAAD------PNRPLWFP-----GSTPPPWLDGSLPGDFGFDPLGLG 96
Query: 115 KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL--LLDGNT 172
P+ E++H RWAMLGAAG IPE K G P W+ G L D T
Sbjct: 97 SDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDKTT 154
Query: 173 LNYFGKNIPINLVFAVIAE------IV---------------LDLEDKLHPGG-PFDPLG 210
L + ++F AE I+ L D +PGG FDPLG
Sbjct: 155 L------FIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLG 208
Query: 211 LAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
PD+ L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 209 WGSGSPDKIKELRTKEIKNGRLAMLAVMGAWFQAIYTGTGPIDNLFAHLADP 260
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/211 (41%), Positives = 111/211 (52%), Gaps = 42/211 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGA G I PE K
Sbjct: 65 YLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKL 123
Query: 151 GANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------ 190
G PE WFKTG G T NY+ P L +A
Sbjct: 124 GL-IPPETALPWFKTGVFPPAG-TYNYWAD--PYTLFVFEMALMGFAEHRRFQDWANPGS 179
Query: 191 ---EIVLDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
+ L LE D +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+
Sbjct: 180 MGKQYFLGLEKYLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGY 239
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
F Q VTG GP++NL HL+DP NN++T +
Sbjct: 240 FAQGPVTGVGPLQNLLDHLADPVNNNIITSL 270
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 110/207 (53%), Gaps = 38/207 (18%)
Query: 97 YLTGEVPGDYGYDPFGLS--KKPDDFSK--YQAY-ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGDYG+DP GL + P F + + AY E+I+ R+AMLGA G I PE K G
Sbjct: 80 YLDGSLPGDYGFDPLGLMDPEGPGGFIEPGWLAYGEIINGRYAMLGAVGAIAPEILGKLG 139
Query: 152 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA-------------------- 190
A+ WF+TG + G T +Y+ P L +A
Sbjct: 140 LIPQETALPWFRTGVIPPAG-TYDYWAD--PFTLFVLEMALMGFAEHRRLQDYRYPGSMS 196
Query: 191 -EIVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
+ L E L +PGGP F+PLG KD LK+KE+KNGRLAM A++G+F+
Sbjct: 197 KQYFLGFEKYLGGSGNPSYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAIVGYFI 256
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLLT 268
Q VTG GP +NL HL+DP NNLLT
Sbjct: 257 QGLVTGVGPFQNLLDHLADPVNNNLLT 283
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL+++RWAMLG AG ++PE F K G
Sbjct: 60 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 119
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 120 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 170
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 171 NYSLPPNEVGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGKGP 226
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +H+SDP+ N ++ + G
Sbjct: 227 FDNLLQHISDPWHNTIIQTLRG 248
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 105/202 (51%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL+++RWAMLG AG ++PE F K G
Sbjct: 63 PSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 123 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 174 NYSLPPNEVGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGKGP 229
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +H+SDP+ N ++ + G
Sbjct: 230 FDNLLQHISDPWHNTIIQTLRG 251
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 102/203 (50%), Gaps = 37/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F K G
Sbjct: 63 PMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 123 APQ--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+GP
Sbjct: 174 QYSLPPNECGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIVQHNVTGKGP 229
Query: 251 VENLAKHLSDPFANNLLTVISGN 273
+NL +H+SDP+ N ++ GN
Sbjct: 230 FDNLLQHISDPWHNTIVQTFGGN 252
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 125/265 (47%), Gaps = 49/265 (18%)
Query: 39 NPSTFKPVALFSKKKAAPPAKSKPV--AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
+P KP A + P ++ VS V E L GPDR I+ P S P
Sbjct: 26 SPPHLKPGAAAASFTRTPQRRANATKGGVSTVCEPL----GPDRPIWFPG-----SSPPP 76
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
+L G +PGD+G+DP GL +P+ + EL+H RWAML AAG ++P+ ++G
Sbjct: 77 WLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG----- 131
Query: 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI---------------VLDLEDKL- 200
+ G D + YF P L + +A + +D+E +
Sbjct: 132 ---FIDAGFSWFDAGSREYFAD--PWTLFVSQMALMGWAEGRRWADYLRPGCVDIEPRFP 186
Query: 201 ----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+PGG FD + P+ +L+ KEIKNGRLAM A +GF+ QA TG+
Sbjct: 187 NRRNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQ 246
Query: 249 GPVENLAKHLSDPFANNLLTVISGN 273
GP++NL HL+DP N+ + + +
Sbjct: 247 GPIDNLLAHLADPGHCNIFSAFTSH 271
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 120/251 (47%), Gaps = 72/251 (28%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------- 118
PDR ++ P ++ PEYL G + GDYG+DPFGL + +
Sbjct: 47 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAG 101
Query: 119 ------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
+++ ELIH RWAML G + E
Sbjct: 102 DIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG----- 156
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLH 201
W G + L++G++ Y G+ +P ++ ++ E++ LD E +L+
Sbjct: 157 ---VTWQDAGKVELVEGSS--YLGQPLPFSITTLILIEVLVIGYIEFQRNAELDPEKRLY 211
Query: 202 PGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 260
PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N A HLSD
Sbjct: 212 PGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSD 271
Query: 261 PFANNLLTVIS 271
P ++ +S
Sbjct: 272 PLHTTIIDTLS 282
>gi|388504276|gb|AFK40204.1| unknown [Lotus japonicus]
Length = 202
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 94/175 (53%), Gaps = 28/175 (16%)
Query: 59 KSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD 118
KSKPV+ + WYGPDR +L E P YLTGE PGDYG+D GLS P+
Sbjct: 38 KSKPVSSG------SPWYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPE 88
Query: 119 DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK 178
F+K + E+IH+RWAMLGA G + PE + G G EAVWFK G+ + L+Y G
Sbjct: 89 TFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGN 147
Query: 179 N--IPINLVFAVIAEIVL----------------DLEDKLHPGGPFDPLGLAKDP 215
+ + A+ A V+ ++ D L+PGG FDPLGLA DP
Sbjct: 148 PSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDP 202
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/265 (31%), Positives = 125/265 (47%), Gaps = 49/265 (18%)
Query: 39 NPSTFKPVALFSKKKAAPPAKSKPV--AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPE 96
+P KP A + P ++ VS V E L GPDR I+ P S P
Sbjct: 26 SPPHLKPGAAAASFTRTPQRRANATKGGVSTVCEPL----GPDRPIWFPG-----SSPPP 76
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
+L G +PGD+G+DP GL +P+ + EL+H RWAML AAG ++P+ ++G
Sbjct: 77 WLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWG----- 131
Query: 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI---------------VLDLEDKL- 200
+ G D + YF P L + +A + +D+E +
Sbjct: 132 ---FIDAGFSWFDAGSREYFAD--PWTLFVSQMALMGWAEGRRWADYLRPGCVDIEPRFP 186
Query: 201 ----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+PGG FD + P+ +L+ KEIKNGRLAM A +GF+ QA TG+
Sbjct: 187 NRKNPVPDVGYPGGLWFDWANWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQ 246
Query: 249 GPVENLAKHLSDPFANNLLTVISGN 273
GP++NL HL+DP N+ + + +
Sbjct: 247 GPIDNLLAHLADPGHCNIFSAFTSH 271
>gi|302854483|ref|XP_002958749.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
gi|300255924|gb|EFJ40205.1| hypothetical protein VOLCADRAFT_108288 [Volvox carteri f.
nagariensis]
Length = 2775
Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats.
Identities = 70/146 (47%), Positives = 88/146 (60%), Gaps = 19/146 (13%)
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL 194
A G + PE +K G G EAVWFK GA + L+Y G + N+V + +++L
Sbjct: 2614 ALGCLTPELLSKNGVQFG-EAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVIL 2672
Query: 195 ---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
+ D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GF
Sbjct: 2673 MGLVEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGF 2732
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANN 265
F+QA VTG+GP+ENL HL++P NN
Sbjct: 2733 FVQAIVTGKGPIENLNDHLANPAVNN 2758
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 120/251 (47%), Gaps = 72/251 (28%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------- 118
PDR ++ P ++ PEYL G + GDYG+DPFGL + +
Sbjct: 47 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSLDQNLAKNLAG 101
Query: 119 ------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
+++ ELIH RWAML G + E
Sbjct: 102 DIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG----- 156
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLH 201
W G + L++G++ Y G+ +P ++ ++ E++ LD E +L+
Sbjct: 157 ---VTWQDAGKVELVEGSS--YLGQPLPFSITTLILIEVLVIGYIEFQRNAELDPEKRLY 211
Query: 202 PGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 260
PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N A HLSD
Sbjct: 212 PGGNFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSD 271
Query: 261 PFANNLLTVIS 271
P ++ +S
Sbjct: 272 PLHTTIIDTLS 282
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 112/231 (48%), Gaps = 44/231 (19%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD +
Sbjct: 54 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 104
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
ELIH+RWAML G IIPE + G F D + YF + + +
Sbjct: 105 QAELIHSRWAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTLFV 155
Query: 185 VFAVI---------AEIV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQF 218
V+ A+++ +D+E K +PGG FD + + P+
Sbjct: 156 AQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPV 215
Query: 219 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 269
+L+ KEIKNGRLAM A LGF QA T + P+ENL HL+DP N+ +V
Sbjct: 216 MVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSV 266
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 129/278 (46%), Gaps = 52/278 (18%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
++ VR + + PS VA + +A + VS V E L GPDR ++
Sbjct: 11 CSIQPRVRAALRAPTLPSQNAAVARMAGHRAG----ATKGGVSAVCEPL----GPDRPLW 62
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
P S P +L G +PGD+G+DP GL P+ + EL+H+RWAML AG ++
Sbjct: 63 FPG-----SSPPPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILV 117
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI----------- 192
PE K+G F +D +YF P L + +A +
Sbjct: 118 PEVLEKWG---------FMEDYSWIDAGARDYFAD--PWTLFVSQMALMGWAEGRRWADY 166
Query: 193 ----VLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFA 235
+ +E +L +PGG FD + P+ +L+ KEIKNGRLAM A
Sbjct: 167 LNPGCVAVEPRLPNRRNPVPDVGYPGGLWFDWGNWGRGSPEPVMVLRTKEIKNGRLAMLA 226
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
+GF+ QA TGEGP++NL HL+DP N+ + + +
Sbjct: 227 FVGFWFQAVYTGEGPIDNLLHHLADPGHCNVFSAFTSH 264
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/287 (32%), Positives = 130/287 (45%), Gaps = 47/287 (16%)
Query: 1 MASLAASSTPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVAL-FSKKKAAPPAK 59
MAS AA ++S+ A ++ + + + GA+ S A+ + KAA P +
Sbjct: 1 MASGAAVVCASSSVTAAVVVAPSSSSQKTILANNVGAAKASFLVGRAVSLRQTKAAMPRR 60
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+ V E W+ + P +L G +PGD+G+DP GL P+
Sbjct: 61 AAVTVSQAVQTERPLWF-------------PGNTPPPWLDGSLPGDFGFDPLGLGSDPET 107
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL--LLDGNTLNYFG 177
EL+H RWAMLGAAG IPE K G P W+ G L D TL
Sbjct: 108 LKWMVQAELVHCRWAMLGAAGIFIPELCTKLGILNTPS--WYTAGELEYFTDKTTL---- 161
Query: 178 KNIPINLVFAVIAE------IV---------------LDLEDKLHPGG-PFDPLGLAK-D 214
+ ++F AE I+ L D +PGG FDPLG
Sbjct: 162 --FVVEMIFLGWAEGRRWADILEPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGS 219
Query: 215 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
P++ L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 220 PEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADP 266
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 110/234 (47%), Gaps = 41/234 (17%)
Query: 51 KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDP 110
K++AA +S V V E PDR ++ P S P +L G +PGD+G+DP
Sbjct: 40 KERAAIGGRSMGTTVCAVAE-------PDRPLWFPG-----STPPPWLDGTLPGDFGFDP 87
Query: 111 FGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDG 170
GL P+ EL+H RWAMLGAAG IPE K G P W+ G L
Sbjct: 88 LGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPS--WYSAGELEYFT 145
Query: 171 NTLNYFGKNIPINLVFAVIAE------IV---------------LDLEDKLHPGG-PFDP 208
+T F + L F AE I+ L D +PGG FDP
Sbjct: 146 DTTTLF----IVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDP 201
Query: 209 LGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
LG P + L+ KEIKNGRLAM A++G + Q T GP++NL HL+DP
Sbjct: 202 LGWGTGSPQKIKDLRTKEIKNGRLAMLAVMGAWFQHIYTATGPIDNLFAHLADP 255
>gi|227206230|dbj|BAH57170.1| AT3G27690 [Arabidopsis thaliana]
Length = 160
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 92/149 (61%), Gaps = 19/149 (12%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-E 191
MLGA G PE +K G G EAVWFK G+ + L+Y G I + A+ A +
Sbjct: 1 MLGALGCTFPEILSKNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQ 59
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
+VL + D L+PGG FDPL LA+DP+ F+ LKVKE+KNGRLAMF+M
Sbjct: 60 VVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSM 119
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENL H++DP ANN
Sbjct: 120 FGFFVQAIVTGKGPIENLFDHIADPVANN 148
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 76/199 (38%), Positives = 102/199 (51%), Gaps = 31/199 (15%)
Query: 80 RRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R +++P S P +LTG +P DYG+DP GL K+P + +++Q E+IH+RWAMLG A
Sbjct: 37 RAVWMPG-----STPPAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLGVA 91
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL----- 194
G EA W + A + D T Y G P L V E+ +
Sbjct: 92 GAAGQEAITGV--------TWIE--APVQDSQT--YLGAESPFPLPVVVAIEVFVMAFVE 139
Query: 195 -------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247
D +L+PGG FDP G +K D F LK KEI NGR+AM A G QA T
Sbjct: 140 QQRSNEKDPAKRLYPGGAFDPAGFSKGAD-FETLKKKEIANGRVAMLAFAGLIGQAQATN 198
Query: 248 -EGPVENLAKHLSDPFANN 265
EGP+ L +H++DP+ N
Sbjct: 199 LEGPLSALGRHVADPWHVN 217
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 106/201 (52%), Gaps = 37/201 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YLTG + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 65 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKLGIIN 124
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV-----LDL-------EDKL-- 200
PE W+ D YF + + ++ ++ V D+ +D +
Sbjct: 125 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 175
Query: 201 ----------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+GP
Sbjct: 176 QYSLPKGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFVVQHNVTGKGP 231
Query: 251 VENLAKHLSDPFANNLLTVIS 271
ENL +HLSDP+ N ++ +S
Sbjct: 232 FENLLQHLSDPWHNTIVQTLS 252
>gi|193875802|gb|ACF24537.1| light harvesting complex protein LHCII-2 [Gymnochlora stellata]
Length = 248
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/124 (47%), Positives = 83/124 (66%), Gaps = 5/124 (4%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
+WYGPDR +LP+ L + +P+YLTGE PGDYG+D GLS P +F+ Y+ EL+HARW
Sbjct: 119 EWYGPDRPKWLPDAFL--AGVPDYLTGEYPGDYGWDALGLSADPQNFANYREAELLHARW 176
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVI-A 190
AMLGA G + PE N + E VW+K GAL+L+G +++Y G K I + + A+ A
Sbjct: 177 AMLGALGCVFPEVINSYYNGNIAEPVWWKAGALVLNGQSIDYLGSDKFIHASSIIAIAGA 236
Query: 191 EIVL 194
++VL
Sbjct: 237 QVVL 240
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 108/206 (52%), Gaps = 31/206 (15%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GD+G+DP GL++ P Y EL+H R+AMLG G ++ + G +
Sbjct: 64 PPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGVFGILVTDLLRVTGISK 123
Query: 155 GPEAVWFKTGALLLD-GNTLNYFGKNIPINLVFAVIAEI-----------------VLDL 196
P VWF+ GA+ D NT F + LV E L
Sbjct: 124 IP--VWFEAGAVKYDFANTKTLF----LVQLVLMGFVETKRYMDFVSPGSQAKEGSFFGL 177
Query: 197 EDKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
E L +PGGP +PLGLAKD + K+KEIKNGRLAM AMLG F+QA VT G
Sbjct: 178 EASLKGLEPGYPGGPLLNPLGLAKDINNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVG 237
Query: 250 PVENLAKHLSDPFANNLLTVISGNAE 275
P++NL +HLS+P+ ++ ++ ++
Sbjct: 238 PIDNLVEHLSNPWHKTIIQTLANSSS 263
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL+ P+ EL+H RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLG 117
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G L +T F + L F AE
Sbjct: 118 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF----IVELFFIGWAEGRRWAD 171
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG P++ L+ KEIKNGRLAM
Sbjct: 172 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 231
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + Q TG GP++NL HL+DP
Sbjct: 232 AVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 129/264 (48%), Gaps = 42/264 (15%)
Query: 33 SAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEG-LLDR 91
S ++ + +P + + PAK +PV+ +P P R+ +G L
Sbjct: 3 SVTAQTSLAVIRPCSRSRFLTGSSPAKLRPVSRNPSASRAV----PAFRVSAKKGEWLPG 58
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
P+YL G +PGD G+DP GL++ P++ + EL + RWAMLG AG ++PE F K G
Sbjct: 59 LASPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFTKIG 118
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV-----LDLED-------- 198
P+ W+ D YF + + ++ ++ V D+++
Sbjct: 119 IINAPQ--WY-------DAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDP 169
Query: 199 -----KL------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247
+L +PGG F+PL A + K KEI NGRLAM A LGF +Q +TG
Sbjct: 170 IFKSYRLPPNEVGYPGGIFNPLNFAPSLEA----KEKEIANGRLAMLAFLGFLIQHNLTG 225
Query: 248 EGPVENLAKHLSDPFANNLLTVIS 271
+GP +NL +HLSDP+ N ++ +S
Sbjct: 226 KGPFDNLLQHLSDPWHNTIIQTLS 249
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 106/203 (52%), Gaps = 29/203 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD+G+DP GL + P Y EL+HAR+AM G AG + + G
Sbjct: 67 PPYLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHARFAMAGVAGILFTDLLRVTGIRK 126
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI-----------------VLDLE 197
P VW++ GA+ + + I + L+ AE LE
Sbjct: 127 LP--VWYEAGAVKFEFASTRTL---IVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLE 181
Query: 198 DKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L +PGGP +PLGLA+D + + K+KEIKNGRLAM AM+G F+QA VT GP
Sbjct: 182 SALEGLEPGYPGGPLLNPLGLARDIENAHVWKLKEIKNGRLAMVAMVGIFVQAAVTHAGP 241
Query: 251 VENLAKHLSDPFANNLLTVISGN 273
++NL +HLS+P+ ++ ++ +
Sbjct: 242 IDNLIEHLSNPWHRTIIQTLANS 264
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 115/252 (45%), Gaps = 71/252 (28%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP------------------- 117
G +R ++ P ++ P+YL G + GDYG+DP GL K P
Sbjct: 61 GANRPLWFPG-----AKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMP 115
Query: 118 --------DDFS-----------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+D S +++ ELIH RWAML G I E F
Sbjct: 116 GELLGERVEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTG--- 172
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKL 200
W G + LD +YFG ++P + V E++ LD E +L
Sbjct: 173 -----VTWQDAGKVELDQGP-SYFGFSLPFTITALVWIEVLVIGFIEFQRNTELDPEKRL 226
Query: 201 HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
+PGG FDPLGLA DP++ +LK+ EIK+ RLAM A GF +QA TG+GP++N HLS
Sbjct: 227 YPGGSYFDPLGLAADPERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLDNWVTHLS 286
Query: 260 DPFANNLLTVIS 271
DP ++ S
Sbjct: 287 DPLHTTIIDTFS 298
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 102/207 (49%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHCRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G +T F + L+F AE
Sbjct: 117 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF----IVELIFIGWAEGRRWAD 170
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG P + L+ KEIKNGRLAM
Sbjct: 171 ILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAML 230
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + Q TG GP++NL HL+DP
Sbjct: 231 AVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 102/207 (49%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 63 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 117
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G L +T F + L F AE
Sbjct: 118 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF----VVELFFIGWAEGRRWAD 171
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG P++ L+ KEIKNGRLAM
Sbjct: 172 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 231
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + Q TG GP++NL HL+DP
Sbjct: 232 AVMGAWFQHIYTGTGPIDNLFAHLADP 258
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 113/235 (48%), Gaps = 44/235 (18%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD +
Sbjct: 54 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 104
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
ELIH+RWAML G IIPE + G F D + YF + + +
Sbjct: 105 QAELIHSRWAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTLFV 155
Query: 185 VFAVI---------AEIV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQF 218
V+ A+++ +D+E K +PGG FD + + P+
Sbjct: 156 AQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPV 215
Query: 219 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
+L+ KEIKNGRLAM A LGF QA T + P+ENL HL+DP N+ + + +
Sbjct: 216 MVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>gi|47026929|gb|AAT08685.1| chloroplast chlorophyll a/b-binding protein [Hyacinthus orientalis]
Length = 156
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 70/144 (48%), Positives = 86/144 (59%), Gaps = 19/144 (13%)
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIAEIVL--- 194
G + PE + G G EAVWFK GA + L+Y G + + A+ A VL
Sbjct: 2 GCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMG 60
Query: 195 -------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+
Sbjct: 61 AVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMLSMFGFFV 120
Query: 242 QAYVTGEGPVENLAKHLSDPFANN 265
QA VTG+GP+ENLA HL+DP NN
Sbjct: 121 QAIVTGKGPLENLADHLADPVNNN 144
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 109/237 (45%), Gaps = 66/237 (27%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKP---------------------------DDFS--- 121
++ P+YL G + GDYG+DP GL K P +D S
Sbjct: 71 AKCPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLGERVEDLSTIR 130
Query: 122 --------------KYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL 167
+++ ELIH RWAML G I E F W G +
Sbjct: 131 ATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTG--------VTWQDAGKVE 182
Query: 168 LDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGP-FDPLGLAKD 214
LD +YFG ++P + V E++ LD E +L+PGG FDPLGLA D
Sbjct: 183 LDQGP-SYFGFSLPFTITALVWIEVLVIGFIEFQRNTELDPEKRLYPGGSYFDPLGLAAD 241
Query: 215 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
P++ +LK+ EIK+ RLAM A GF +QA TG+GP++N HLSDP ++ S
Sbjct: 242 PERKEVLKLAEIKHARLAMVAAFGFAVQAAATGKGPLDNWVTHLSDPLHTTIIDTFS 298
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/204 (42%), Positives = 109/204 (53%), Gaps = 36/204 (17%)
Query: 101 EVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+PGDYG+DP GLS K+ AY E+I+ R+AMLGA G I PE F K G
Sbjct: 5 RLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGI-IP 63
Query: 156 PEAV--WFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAE----------------IVL 194
PE WFKTG + G T NY+ + + N+ AE L
Sbjct: 64 PETALPWFKTGVIPPAG-TYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQYFL 122
Query: 195 DLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVT 246
LE D +PGGP F+PLG K + LK+KEIKNGRLAM A+LG+F+Q VT
Sbjct: 123 GLEKFLAGSGDPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQGLVT 182
Query: 247 GEGPVENLAKHLSDPFANNLLTVI 270
G GP +NL HL+DP NN+LT +
Sbjct: 183 GVGPFQNLLDHLADPVNNNVLTSL 206
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 100/202 (49%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ PD Y EL++ RWAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D + YF + + ++ ++ V
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFK 172
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL + + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 173 NYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNVTGKGP 228
Query: 251 VENLAKHLSDPFANNLLTVISG 272
ENL +HLSDP+ N ++ G
Sbjct: 229 FENLLQHLSDPWHNTIIQTFQG 250
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 116/238 (48%), Gaps = 48/238 (20%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L GPDR ++ P + P +L G +PGD+G+DP GL +P+ +
Sbjct: 55 GVSAVCEPL----GPDRPVWFPG-----TSPPPWLDGSLPGDFGFDPLGLGSEPETLRWF 105
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
EL+H+RWAML AG +IPE K+G E W+ G YF P
Sbjct: 106 AQAELMHSRWAMLAVAGILIPEILQKWGFM--EEFSWYTAG-------EREYFAD--PWT 154
Query: 184 LVFAVIAEI---------------VLDLEDKL-----------HPGG-PFDPLGLAK-DP 215
L A +A + +D+E + +PGG FD + P
Sbjct: 155 LFIAQMALMGWAEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSP 214
Query: 216 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
+ +L+ KEIKNGRLAM A +GF+ QA TG+GPV+NL HL+DP N+ + + +
Sbjct: 215 EPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPVDNLLAHLADPGHCNIFSAFTSH 272
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 113/235 (48%), Gaps = 44/235 (18%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD +
Sbjct: 54 VSSVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 104
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
ELIH+RWAML G IIPE + G F D + YF + + +
Sbjct: 105 QAELIHSRWAMLAVTGIIIPECLERLG---------FIENFSWYDAGSREYFADSTTLFV 155
Query: 185 VFAVI---------AEIV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQF 218
V+ A+++ +D+E K +PGG FD + + P+
Sbjct: 156 AQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPV 215
Query: 219 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
+L+ KEIKNGRLAM A LGF QA T + P+ENL HL+DP N+ + + +
Sbjct: 216 MVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 270
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 93/281 (33%), Positives = 128/281 (45%), Gaps = 88/281 (31%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F KKAAP SKP A P+ WY ++ PEYL G + GDYG+
Sbjct: 35 FRTKKAAPKKFSKPSADRPL------WY-------------PGAKAPEYLDGSLVGDYGF 75
Query: 109 DPFGLSKKPDDFSKY--------------------------------QAY---------- 126
DPFGL K P ++ +Y Q Y
Sbjct: 76 DPFGLGK-PVEYLQYDLDSLDQNLAKNMAGDIIGTRVESSEVKSTPFQPYTEVFGLQRFR 134
Query: 127 --ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPIN 183
ELIH RWAML G + E W G + L++G++ Y G+ +P +
Sbjct: 135 ECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVEGSS--YLGQPLPFS 184
Query: 184 LVFAVIAEIVL------------DLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGR 230
+ + E++L D E +L+PGG F DPLGLA DP++ A L++ EIK+ R
Sbjct: 185 ISTLIWIEVLLIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEKKATLQLAEIKHAR 244
Query: 231 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
LAM LGF +QA VTG+GP+ N A HLSDP ++ ++
Sbjct: 245 LAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTLT 285
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 109/214 (50%), Gaps = 41/214 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGD+G+DP GL + K+ Y E+IHARWAMLGAAG I PE
Sbjct: 56 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 113
Query: 152 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------ 190
A P+A WF++G + G+ Y+ P + F I
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWAD--PYTIFFVEIVAMQFAELRRLQDFRYPGS 171
Query: 191 ---EIVLDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
+ L LE D +PGGPF + L K LK+KEIKNGRLAM AMLG+
Sbjct: 172 MGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGY 231
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
QA +TG+GP +NL +HL+DP NN+LT +G
Sbjct: 232 GAQAVMTGKGPFQNLVEHLADPVNNNILTNFAGR 265
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 105/204 (51%), Gaps = 29/204 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG G ++ + G +
Sbjct: 67 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 126
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI-----------------VLDLE 197
P VWF+ GA+ + I + L+ AE LE
Sbjct: 127 IP--VWFEAGAVKYEFTNTQTL---IIVQLLLMGFAETKRYMDFIGPGSQAKEGSFFGLE 181
Query: 198 DKL------HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+QA VT GP
Sbjct: 182 ASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGP 241
Query: 251 VENLAKHLSDPFANNLLTVISGNA 274
++NL +HLS+P+ ++ ++ +
Sbjct: 242 IDNLVEHLSNPWHKTVIQTLASSG 265
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 112/238 (47%), Gaps = 36/238 (15%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
+ S KK + P A V +A PDR ++ P S P +L G +PGD+
Sbjct: 33 SFLSGKKLRLKKYTAPTAARSVTVCVAA--DPDRPLWFPG-----STPPPWLDGSLPGDF 85
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+DP GL P+ EL+H RWAMLGAAG IPE K G P W+ G L
Sbjct: 86 GFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYTAGEL 143
Query: 167 LLDGNTLNYFGKNIPINLVFAVIAE------IV---------------LDLEDKLHPGG- 204
+T F + L F AE I+ L D +PGG
Sbjct: 144 EYFTDTTTLF----IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL 199
Query: 205 PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
FDPLG P++ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 200 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/219 (37%), Positives = 111/219 (50%), Gaps = 42/219 (19%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P YL ++PG YG+DP L + P Y EL+H+R+AM A
Sbjct: 30 RVCMKAGNWLPGSKTPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVA 88
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV------IAEI- 192
G +IPE FGA P VW++ G + + IP N + A+ EI
Sbjct: 89 GILIPEVLKAFGAVNLP--VWYEAGKYAQESSP-------IPFNTLIALEIFAFNFVEIK 139
Query: 193 ----------------VLDLE-------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNG 229
+ LE + +PGG FDPLGL+K P + +K++EIKNG
Sbjct: 140 RWQDFKKPGSQGEEGSFVGLEGFFKGTGENGYPGGVFDPLGLSKGPG-YEAMKLREIKNG 198
Query: 230 RLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
RLAM A +GF Q TG+GP+ENL HLS+P ANN T
Sbjct: 199 RLAMLAFIGFASQYLATGKGPIENLLDHLSNPLANNFTT 237
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 104/203 (51%), Gaps = 37/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ G YF + + ++ +++ V
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+GP
Sbjct: 174 QYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGP 229
Query: 251 VENLAKHLSDPFANNLLTVISGN 273
+NL +H+SDP+ N ++ + GN
Sbjct: 230 FDNLLQHISDPWHNTIVQTLGGN 252
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 126/280 (45%), Gaps = 86/280 (30%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
F KK+AP +KP + P+ WY ++ PE+L G + GDYG+
Sbjct: 34 FGTKKSAPKRSAKPTSDRPL------WY-------------PGAKAPEWLDGSLVGDYGF 74
Query: 109 DPFGLSKKPD-------------------------------------------DFSKYQA 125
DPFGL K + +++
Sbjct: 75 DPFGLGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFGLQRFRE 134
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINL 184
ELIH RWAML G + E W G + L++G++ Y G+ +P ++
Sbjct: 135 CELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVELVEGSS--YLGQPLPFSI 184
Query: 185 VFAVIAEIV------------LDLEDKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRL 231
+ E++ LD E +L+PGG F DPLGLA+DP++ A L++ EIK+ RL
Sbjct: 185 TTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKFFDPLGLAEDPEKKATLQLAEIKHARL 244
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
AM A LGF +QA VTG+GP+ N A HLSDP ++ S
Sbjct: 245 AMVAFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDNFS 284
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 115/227 (50%), Gaps = 30/227 (13%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+ +
Sbjct: 44 GVSAVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWF 94
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA--LLLDGNTLNYFGKNIP 181
EL+H+RWAML G ++PE + G W+ G +D TL +
Sbjct: 95 AQAELMHSRWAMLAVFGILVPELLERIGYI--ENFSWYDAGTREYFVDPTTLFVVQMGLM 152
Query: 182 INLVFAVIAEIV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 224
+ A+IV +D+E K+ +PGG FDP+ + P+ +L+ K
Sbjct: 153 GWVEGRRWADIVNPGSVDIEPKVPHVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMVLRTK 212
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
EIKNG LAM A +GF+ QA TGEGP+ENL HL+DP N+ + +
Sbjct: 213 EIKNGGLAMLAFVGFWFQAIYTGEGPIENLMAHLADPGHCNIFSAFT 259
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/231 (39%), Positives = 120/231 (51%), Gaps = 47/231 (20%)
Query: 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIH 130
G DR+++ + YL G +PGD+G+DP GLS P+ K+ AY E+I+
Sbjct: 50 GADRQLWFAS-----KQSLTYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIIN 103
Query: 131 ARWAMLGAAGFIIPEAFNKFGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAV 188
R+AMLGAAG I PE K G PE WF+TG + G T +Y+ P L
Sbjct: 104 GRFAMLGAAGAIAPEILGKAGL-IPPETALPWFQTGVIPPAG-TYDYWAD--PYTLFVFE 159
Query: 189 IA---------------------EIVLDLE-------DKLHPGGP-FDPLGLAKDPDQFA 219
+A + L LE D +PGGP F+PLG KD
Sbjct: 160 MALMGFAEHRRFQDWAKPGSMGKQYFLGLEKFLGGSGDPAYPGGPLFNPLGFGKDEKSMK 219
Query: 220 LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
LK+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 220 ELKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 102/207 (49%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H RWAMLG
Sbjct: 61 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLG 115
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G +T F + L+F AE
Sbjct: 116 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF----IVELIFIGWAEGRRWAD 169
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG P + L+ KEIKNGRLAM
Sbjct: 170 ILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAML 229
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + Q TG GP++NL HL+DP
Sbjct: 230 AVMGAWFQHIYTGTGPIDNLFAHLADP 256
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 107/201 (53%), Gaps = 37/201 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YLTG + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV-----LDL-------EDKL-- 200
PE W+ D YF + + ++ ++ V D+ +D +
Sbjct: 124 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 174
Query: 201 ----------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+PGG F+PL A P Q A K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 175 QYSLPKGEVGYPGGIFNPLNFA--PTQEA--KEKELANGRLAMLAFLGFVVQHNVTGKGP 230
Query: 251 VENLAKHLSDPFANNLLTVIS 271
ENL +HLSDP+ N ++ +
Sbjct: 231 FENLLQHLSDPWHNTIVQTFN 251
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 133/271 (49%), Gaps = 31/271 (11%)
Query: 9 TPAASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPV 68
+P +S + G P ++ S+ + S +A +S AA S AV
Sbjct: 1176 SPQSSKASAGTEGRPRDLVSSSMNANAATSLGGDQGSMAYWSNGSAALVVTS---AVRNT 1232
Query: 69 NEELAKWYGPDRRIFLPEGLLD---RSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQA 125
+ YG R+ FLP LL+ + +P YLTGE+PGD G+DP + + D K +
Sbjct: 1233 GARVDDLYGERRKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQ-RDIMKLRE 1291
Query: 126 YELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT----LNYFGKNIP 181
ELIH RWAML A G ++PE+ + P W+ T N+ L Y G+NIP
Sbjct: 1292 RELIHGRWAMLAAIGVLVPESTARLSLFGTPGQHWWNTHIEWTGTNSGIPELTYLGENIP 1351
Query: 182 --------INLVFAVIAEIV----LDLE-----DKLHPGGP-FDPLGLAK--DPDQFALL 221
I+L +AE++ L++E D+L+PGG FDPLG+ ++ +L
Sbjct: 1352 WGVFWLPIIHLPLFFVAEMLRTGRLEVEAFKDLDRLYPGGKLFDPLGIGGGVSDEELKIL 1411
Query: 222 KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 252
K EI++ RLAM A GF ++A G GP++
Sbjct: 1412 KTIEIQHCRLAMIASFGFIVEALAWGAGPLD 1442
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 131/302 (43%), Gaps = 86/302 (28%)
Query: 29 AVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGL 88
R + +SN S F F KKA+P K+K V DR ++ P
Sbjct: 15 GTRVVSDISSNSSRFTARFGFGTKKASP-KKAKTVI-------------SDRPLWFPG-- 58
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------------------ 118
++ PEYL G + GDYG+DPFGL K +
Sbjct: 59 ---AKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVD 115
Query: 119 -------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGA 165
+++ ELIH RWAML G I E W G
Sbjct: 116 PKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG--------VTWQDAGK 167
Query: 166 L-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGPF-DPLGL 211
+ L+DG++ Y G+ +P ++ + E++ LD E +L+PGG F DPLGL
Sbjct: 168 VELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGL 225
Query: 212 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
A DP + A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP ++ S
Sbjct: 226 ASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285
Query: 272 GN 273
+
Sbjct: 286 SS 287
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/205 (40%), Positives = 106/205 (51%), Gaps = 32/205 (15%)
Query: 96 EYLTGEVPGDYGYDPFGLSKKPD-----DFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS D + + E+I+ R+AMLGAAG I PE F K
Sbjct: 70 SYLDGSLPGDYGFDPLGLSDPQGAGGFIDPNWLRYAEIINGRFAMLGAAGAIAPEIFGKI 129
Query: 151 GANCGPEAV-WFKTGAL--------LLDGNTL-----------------NYFGKNIPINL 184
G A+ WF+TG + D TL +Y+
Sbjct: 130 GLIPQETAIPWFQTGVIPPLGQYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQ 189
Query: 185 VFAVIAEIVLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 243
F +++ D +PGGP F+ LG +D LKVKE+KNGRLAM A+LG+F+QA
Sbjct: 190 YFLGFEKVLGGSGDPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVLGYFIQA 249
Query: 244 YVTGEGPVENLAKHLSDPFANNLLT 268
TG GP +NL HLSDP NN+LT
Sbjct: 250 IFTGVGPFQNLLDHLSDPANNNVLT 274
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 117/249 (46%), Gaps = 73/249 (29%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY------------ 123
+ DR ++ P ++ PEYL G + GDYG+DPFGL K P ++ +Y
Sbjct: 7 FSTDRPLWYP-----GAKAPEYLDGSLVGDYGFDPFGLGK-PAEYLQYDYDGLDQNLAKN 60
Query: 124 --------------------QAY------------ELIHARWAMLGAAGFIIPEAFNKFG 151
Q Y ELIH RWAML G + E
Sbjct: 61 LAGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI- 119
Query: 152 ANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLED 198
W G + L++G++ Y G+ +P ++ + E++ LD E
Sbjct: 120 -------TWQDAGKVELIEGSS--YLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEK 170
Query: 199 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
+L+PGG FDPLGLA DP++ +L++ EIK+ RLAM LGF +QA VTG+GP+ N HL
Sbjct: 171 RLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHL 230
Query: 259 SDPFANNLL 267
SDP +L
Sbjct: 231 SDPLHTTIL 239
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 128/268 (47%), Gaps = 46/268 (17%)
Query: 41 STFKPVALFSKKKAAPPAKSKPVAV---SPVNEELAKWYGPDRRIFLPEGL---LDRSEI 94
++F VAL + + PA+ V V ELAK R+ GL S+
Sbjct: 5 TSFSGVALRPAQSVSRPARRSSVVVRSEGSEGSELAK----VERVAKAGGLYQNFTSSQA 60
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFN 148
YL G +PGD+G+DP GL P+ ++ AY E+IH RWAMLG AGF+ PE
Sbjct: 61 LGYLDGTLPGDFGFDPLGLCD-PEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLA 119
Query: 149 KFGA--NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA---------------- 190
GA EAVWF++G + G Y+ + V A++
Sbjct: 120 TIGAIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNFAELKRWQDYQSPGS 179
Query: 191 ---EIVLDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
+ L LE + +PGG F+ L L K P+ L+ EI+NGRLAM A LG
Sbjct: 180 QGKQYFLGLEAVFGGSGNPAYPGGQFFNMLNLGKTPEAMKKLQTNEIRNGRLAMIACLGC 239
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANNLL 267
F QA +T +GP NL HL+DP +NN+L
Sbjct: 240 FGQAVMTTKGPFANLLDHLADPISNNVL 267
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 100/207 (48%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GLS P+ EL+H RWAMLG
Sbjct: 61 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLG 115
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G +T F + L+F AE
Sbjct: 116 AAGIFIPEFLTKIGILNTPS--WYTAGEQEYFTDTTTLF----IVELIFIGWAEGRRWAD 169
Query: 192 ---------------IVLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
L D +PGG FDPLG P + L+ KEIKNGRLAM
Sbjct: 170 ILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAML 229
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + Q TG GP++NL HL+DP
Sbjct: 230 AVMGAWFQHIYTGTGPIDNLFAHLADP 256
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL+ P+ EL+H RWAMLG
Sbjct: 74 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLG 128
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G L +T F + L F AE
Sbjct: 129 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF----IVELFFIGWAEGRRWAD 182
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG P++ L+ KEIKNGRLAM
Sbjct: 183 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 242
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + Q TG GP++NL HL+DP
Sbjct: 243 AVMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G +T F + LVF AE
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF----IVELVFIGWAEGRRWAD 170
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG + P + L+ KEIKNGRLAM
Sbjct: 171 ILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAML 230
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + Q TG GP++NL HL+DP
Sbjct: 231 AVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 102/207 (49%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H RWAMLG
Sbjct: 74 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLG 128
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G L +T F + L F AE
Sbjct: 129 AAGIFIPEFLTKIGILNTPS--WYTAGELEYFTDTTTLF----VVELFFIGWAEGRRWAD 182
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG P++ L+ KEIKNGRLAM
Sbjct: 183 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 242
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + Q TG GP++NL HL+DP
Sbjct: 243 AVMGAWFQHIYTGTGPIDNLFAHLADP 269
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 99/198 (50%), Gaps = 27/198 (13%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S P +L G +P DYG+DP L P++ + EL+H RWAMLG AG + PE K G
Sbjct: 49 SPAPAHLDGTLPCDYGFDPLNLGADPENLKWFVQAELMHCRWAMLGLAGMVGPELLTKIG 108
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI--VLDL-------EDKL-- 200
P W G DG L G + + AE+ D+ ED L
Sbjct: 109 MADLPN--WIDAGKW--DGYWLGA-GPLFFVQMAMMNWAEVRRWQDMKAPGTMNEDPLTG 163
Query: 201 -----------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
+P G FDP+G AKDP + LK KEI NGRLAM A++G F QA TG G
Sbjct: 164 ANKGDTNTDVGYPKGLFDPMGYAKDPKKAEELKRKEIANGRLAMVAIVGCFAQAISTGTG 223
Query: 250 PVENLAKHLSDPFANNLL 267
PV+NL HL+DP NN+
Sbjct: 224 PVDNLFTHLADPGHNNIF 241
>gi|115777|sp|P12332.2|CB21_SILPR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169886|gb|AAB42157.1| chlorophyl-a/b-binding protein precursor, partial [Silene latifolia
subsp. alba]
Length = 205
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 91/162 (56%), Gaps = 22/162 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L + P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 48 WYGPDRPKYLGP---FSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 104
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-E 191
MLGA G + PE K G G EAVWFK G+ + L+Y G + + A+ A +
Sbjct: 105 MLGALGCVFPELLAKNGVKFG-EAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQ 163
Query: 192 IVL---------------DLEDKLHPGGPFDPLGLAKDPDQF 218
+VL + D+L+PGG FDPLGLA+DP+ F
Sbjct: 164 VVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 51 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 105
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G +T F + L+ AE
Sbjct: 106 AAGIFIPELLTKIGILNTPS--WYTAGEQTYFADTTTLF----IVELILIGWAEGRRWAD 159
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG P++ L+ KEIKNGRLAM
Sbjct: 160 IIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGSGSPEKIKELRTKEIKNGRLAML 219
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + QA TG GP++NL HL+DP
Sbjct: 220 AVMGAWFQAEYTGTGPIDNLFAHLADP 246
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 105/204 (51%), Gaps = 29/204 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GDYG+DP GL + P+ Y EL+HAR+AMLG G ++ + G +
Sbjct: 14 PAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAMLGVFGILVTDLLRVTGLSK 73
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI-----------------VLDLE 197
P VWF+ GA+ + I + L+ AE LE
Sbjct: 74 IP--VWFEAGAVKYEFTNTQTL---IIVQLLLMGFAETKRYMDFISPGSQAKEGSFFGLE 128
Query: 198 DKL------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+PGGP +PLGLAKD K+KEIKNGRLAM A+LG F+QA VT GP
Sbjct: 129 ASFEGLEPGYPGGPLLNPLGLAKDIKNARESKLKEIKNGRLAMVAILGIFVQASVTHVGP 188
Query: 251 VENLAKHLSDPFANNLLTVISGNA 274
++NL +HLS+P+ ++ ++ +
Sbjct: 189 IDNLVEHLSNPWHKTVIQTLASSG 212
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 100/193 (51%), Gaps = 32/193 (16%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +P DYG+DP GL K+PD+ +++Q ELIHARWAMLG +G
Sbjct: 46 PSYLDGSMPCDYGFDPLGLGKEPDNLARFQEAELIHARWAMLGVSG------------AA 93
Query: 155 GPEAVWFKTGALLLDG---NTLNYFGKNIPINL-VFAVIAEIVL-----------DLEDK 199
G E + TG ++ + Y G IP L A I V+ D +
Sbjct: 94 GAEII---TGINWVEAPVQSQQTYLGNTIPFPLPAIAAIEVFVMAYVESKRGSETDRSKR 150
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG-EGPVENLAKHL 258
++PGG FDP G +K D F LK KE+ NGR+AM A G +A EGPV LA+HL
Sbjct: 151 MYPGGAFDPAGFSKGAD-FEKLKRKELANGRVAMLAFAGIIGEAQANNLEGPVAALARHL 209
Query: 259 SDPFANNLLTVIS 271
+DP+ N T ++
Sbjct: 210 ADPWHVNAATNVA 222
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 118/251 (47%), Gaps = 72/251 (28%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------- 118
PDR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 49 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNLAG 103
Query: 119 ------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
+++ ELIH RWAML G + E
Sbjct: 104 DIIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG----- 158
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLH 201
W G + L++G++ Y G+ +P ++ + E V LD E +L+
Sbjct: 159 ---VTWQDAGKVELVEGSS--YLGQPLPFSITALIWIEAVIIGYIEFQRNAELDPEKRLY 213
Query: 202 PGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSD 260
PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA+VTG+GP+ N A HLSD
Sbjct: 214 PGGQFFDPLGLASDPEKKATLQLAEIKHARLAMVAFLGFAVQAWVTGKGPLNNWATHLSD 273
Query: 261 PFANNLLTVIS 271
P ++ +S
Sbjct: 274 PLHTTIIDNLS 284
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 104/203 (51%), Gaps = 37/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 123 VPK--WY-------DAGKEEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A + K KEI NGRLAM A LGF +Q VTG+GP
Sbjct: 174 QYSLPKGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGP 229
Query: 251 VENLAKHLSDPFANNLLTVISGN 273
+NL +HLSDP+ N ++ +SG+
Sbjct: 230 FDNLLQHLSDPWHNTIVQTLSGS 252
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 104/210 (49%), Gaps = 40/210 (19%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 48 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 102
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI-------- 189
AAG IPE K G P W+ G YF + +V ++
Sbjct: 103 AAGIFIPELLTKIGILNTPS--WYTAG-------EQEYFTDTTTLFIVELILIGWAEGRR 153
Query: 190 -AEIV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRL 231
A+I+ L D +PGG FDPLG P++ L+ KEIKNGRL
Sbjct: 154 WADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGTGSPEKLKELRTKEIKNGRL 213
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
AM A++G + QA TG GP++NL HL+DP
Sbjct: 214 AMLAVMGAWFQAEYTGTGPIDNLFAHLADP 243
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/207 (38%), Positives = 103/207 (49%), Gaps = 34/207 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 53 PNRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 107
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G +T F I L+ AE
Sbjct: 108 AAGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF----IIELILIGWAEGRRWAD 161
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG P++ L+ KEIKNGRLAM
Sbjct: 162 IIKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAML 221
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + QA TG GP++NL HL+DP
Sbjct: 222 AVMGAWFQAEYTGTGPIDNLFAHLADP 248
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 95/185 (51%), Gaps = 18/185 (9%)
Query: 81 RIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAA 139
R+ + G L S+ P +L ++PG+YG+DP L K+P ++ E+IH RWAMLG A
Sbjct: 31 RVTMKAGNWLPGSDAPAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVA 90
Query: 140 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL----- 194
G + E W+ ++G +FG +P +L + E V
Sbjct: 91 GSLAVELLGY--------GNWYDAPLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAE 142
Query: 195 ----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
D ++PGG FDPLG AKD + LK+KEIKNGRLAM A LGF Q TG+GP
Sbjct: 143 GQRGDAGGVVYPGGAFDPLGFAKDSSKSGELKLKEIKNGRLAMVAFLGFVAQHAATGKGP 202
Query: 251 VENLA 255
+ A
Sbjct: 203 IAAWA 207
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 115/238 (48%), Gaps = 47/238 (19%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L GPDR I+ P S P +L G +PGD+G+DP GL +P+ +
Sbjct: 14 GVSTVCEPL----GPDRPIWFPG-----SSPPPWLDGSLPGDFGFDPLGLGSEPELLRWF 64
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
EL+H RWAML AAG ++P+ ++G G D + YF P
Sbjct: 65 AQAELMHGRWAMLAAAGILVPDLLARWGF--------IDAGFSWFDAGSREYFAD--PWT 114
Query: 184 LVFAVIAEI---------------VLDLEDKL-----------HPGG-PFDPLGLAK-DP 215
L + +A + +D+E + +PGG FD + P
Sbjct: 115 LFVSQMALMGWAEGRRWADYLRPGCVDIEPRFPNRKNPVPDVGYPGGLWFDWANWGRGSP 174
Query: 216 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
+ +L+ KEIKNGRLAM A +GF+ QA TG+GP++NL HL+DP N+ + + +
Sbjct: 175 EPVMVLRTKEIKNGRLAMLAFVGFWFQAVYTGQGPIDNLLAHLADPGHCNIFSAFTSH 232
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 27/203 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GD+G+DP GL + P Y EL+H R+AMLG +G ++ + G +
Sbjct: 60 PPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTGISE 119
Query: 155 GPEAVWFKTGA---------------LLLDG--NTLNYF-----GKNIPINLVFAVIAEI 192
P VW+ GA LLL G T Y G F + E
Sbjct: 120 LP--VWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGL--EA 175
Query: 193 VLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
+ +PGGP +PLG+AKD K+KEIKNGRLAM AMLG F+QAYVT GP+
Sbjct: 176 AFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPI 235
Query: 252 ENLAKHLSDPFANNLLTVISGNA 274
+NL +HLS+P+ ++ +S ++
Sbjct: 236 DNLVEHLSNPWHKTIIQTLSSSS 258
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 98/183 (53%), Gaps = 32/183 (17%)
Query: 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARW 133
++YGPDR +L + P YLTGE PGDYG+D GLS P+ F++Y+ E+IHARW
Sbjct: 31 EFYGPDRAKWLGP---FSDDTPSYLTGEFPGDYGWDTAGLSADPETFARYREIEVIHARW 87
Query: 134 AMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG-------KNIPINLVF 186
AMLGA G I PE A E VWFK GA + L+Y G ++I L
Sbjct: 88 AMLGALGCITPELIGGDIA----EPVWFKAGAQIFSEGGLDYLGNPSLVHAQSIIATLAV 143
Query: 187 AVI----------AEIVL------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGR 230
VI A V+ DL D L+PG FDPL PD FA LKVKEIKNGR
Sbjct: 144 QVILMGQAEAFRAAGYVVPGGFGEDL-DNLYPGDAFDPLAWLI-PDTFAELKVKEIKNGR 201
Query: 231 LAM 233
LA
Sbjct: 202 LAC 204
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 107/214 (50%), Gaps = 33/214 (15%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++ P S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGA
Sbjct: 64 DRPLWFPG-----SQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 118
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAV-----IAEIV 193
AG IPEA K G P D TL F I ++FA A+I+
Sbjct: 119 AGIFIPEALTKAGILNTPSWTVAGDQQYFTDATTL--FVIEI---ILFAWAEGRRWADII 173
Query: 194 ---------------LDLEDKLHPGG-PFDPLGLAKDPDQFAL--LKVKEIKNGRLAMFA 235
L D +PGG FDPLG + D L L+ +EIKNGRLAM A
Sbjct: 174 NPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTGDAAKLKDLRTREIKNGRLAMLA 233
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 269
+LG +QA T GP++NL HL+DP N + +
Sbjct: 234 VLGAVVQANYTHTGPIDNLLAHLADPGHNTIFAL 267
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 104/210 (49%), Gaps = 40/210 (19%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLG
Sbjct: 46 PERPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLG 100
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI-------- 189
AAG IPE K G P W+ G YF + +V ++
Sbjct: 101 AAGIFIPELLTKIGILNTPS--WYTAGE-------QEYFTDTTTLFVVELILIGWAEGRR 151
Query: 190 -AEIV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRL 231
A+I+ L D +PGG FDPLG P++ L+ KEIKNGRL
Sbjct: 152 WADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGYGNGSPEKLKELRTKEIKNGRL 211
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
AM A++G + QA TG GP++NL HL+DP
Sbjct: 212 AMLAVMGAWFQAEYTGTGPIDNLFAHLADP 241
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 102/206 (49%), Gaps = 34/206 (16%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR I+ P S P +L G +PGD+G+DP+GL P+ EL+H RWAMLGA
Sbjct: 64 DRPIWFPG-----STPPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGA 118
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------I 192
AG IPE K G P W+ G +T F I L+ AE I
Sbjct: 119 AGIFIPEFLTKIGVLNTP--FWYTAGEQQYFTDTTTLF----IIELILIGWAEGRRWADI 172
Query: 193 V---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFA 235
+ L D +PGG FDPLG P++ L+ KEIKNGRLAM A
Sbjct: 173 IKPGSVNTDPIFPSNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLA 232
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDP 261
++G + QA TG GP++NL HL+DP
Sbjct: 233 VMGAWFQAEYTGTGPIDNLFAHLADP 258
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 105/211 (49%), Gaps = 35/211 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G +T F + LVF AE
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF----IVELVFIGWAEGRRWAD 170
Query: 192 IV---------------LDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMF 234
I+ L D +PGG FDPLG + P + L+ KEIKNGRLAM
Sbjct: 171 ILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAML 230
Query: 235 AMLGFFLQAYVTGEGPVENL-AKHLSDPFAN 264
A++G + Q TG GP++NL A HL+DP A
Sbjct: 231 AVMGAWFQHIYTGTGPIDNLFAAHLADPHAT 261
>gi|13676408|dbj|BAB41193.1| type III chlorophyll a/b-binding protein [Amaranthus tricolor]
Length = 156
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 88/159 (55%), Gaps = 25/159 (15%)
Query: 105 DYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG 164
DYG+D GLS P+ F++ +A E+IH RWAMLGA G I PE K+ E VWFK G
Sbjct: 1 DYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRVSFKEPVWFKAG 60
Query: 165 ALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE---------------------DKLHPG 203
A + L+Y G NLV A VL + + L+PG
Sbjct: 61 AQIFSEGGLDYLGNP---NLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPG 117
Query: 204 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
G FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+
Sbjct: 118 GQYFDPLGLADDPVPFAELKVKEIKNGRLAMFSMFGFFV 156
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 111/212 (52%), Gaps = 42/212 (19%)
Query: 96 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 149
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 65 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 123
Query: 150 FGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIA----------------- 190
G PE WF+TG + G T +Y+ P L +A
Sbjct: 124 AGL-IPPETALPWFRTGVIPPAG-TYSYWAD--PYTLFVFEMALMGFAEHRRFQDWAKPG 179
Query: 191 ----EIVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 238
+ L E L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG
Sbjct: 180 SMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG 239
Query: 239 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 240 YFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 111/212 (52%), Gaps = 42/212 (19%)
Query: 96 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 149
YL G +PGD+G+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 65 SYLDGSLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 123
Query: 150 FGANCGPEAV--WFKTGALLLDGNTLNYFGKNIPINLVFAVIA----------------- 190
G PE WF+TG + G T +Y+ P L +A
Sbjct: 124 AGL-IPPETALPWFRTGVIPPAG-TYSYWAD--PYTLFVFEMALMGFAEHRRLQDWAKPG 179
Query: 191 ----EIVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLG 238
+ L E L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG
Sbjct: 180 SMGKQYFLGFEKYLGGSGEPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILG 239
Query: 239 FFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
+F+Q VTG GP +NL HL+DP NN+LT +
Sbjct: 240 YFVQGLVTGVGPYQNLLDHLADPVHNNILTSL 271
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 101/202 (50%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G++PGD G+DP GL++ P++ Y EL++ RWAMLG AG + PE K G
Sbjct: 56 PAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPELLTKIGLIN 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
PE W+ D YF + + +V ++ V
Sbjct: 116 APE--WY-------DAGKSTYFASSSTLFVVEFILFHYVEIRRWQDIKEPGCVNQDPIFK 166
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL A + K KEI NGRLAM A LGF +Q VTG+GP
Sbjct: 167 SYSLPPHECGYPGSVFNPLNFAPTLEA----KEKEIANGRLAMLAYLGFSVQHAVTGKGP 222
Query: 251 VENLAKHLSDPFANNLLTVISG 272
++NL +HLSDP+ N ++ SG
Sbjct: 223 LDNLFQHLSDPWHNTIIQTFSG 244
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 100/202 (49%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE FG
Sbjct: 62 PTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSFGFID 121
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D + YF + + ++ ++ V
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPVFK 172
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL + + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 173 NYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNVTGKGP 228
Query: 251 VENLAKHLSDPFANNLLTVISG 272
ENL +HLSDP+ N ++ G
Sbjct: 229 FENLLQHLSDPWHNTIIQTFQG 250
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/196 (40%), Positives = 100/196 (51%), Gaps = 26/196 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF-NKFGAN 153
P++L G +PGDYG+DP GL + Y+ EL HARWAMLG G PE N F
Sbjct: 52 PKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQNPFVEG 111
Query: 154 CGPEAVWFKTGALLLDG-----NTL---NYFGKNIPINLVFAVIAEIVLDLEDKL----- 200
P W + A L DG NTL F N + + ED L
Sbjct: 112 AMPN--WAE--APLWDGYMASPNTLFVVQMFMMNWAEVRRWQDMKNPGTMNEDPLTGANK 167
Query: 201 --------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 252
+P G FDP+G+AKDP++ +LKVKEI NGRLAM A++G +Q TG GP+
Sbjct: 168 GDTNTDVGYPKGLFDPMGMAKDPEKVKVLKVKEIANGRLAMVAVMGCIIQNEATGVGPIA 227
Query: 253 NLAKHLSDPFANNLLT 268
NL HL+DP N + T
Sbjct: 228 NLKAHLADPAHNTIFT 243
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 130/291 (44%), Gaps = 52/291 (17%)
Query: 11 AASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAV--SPV 68
A+++ AK +G+ SS+ + ++ S F AL K AA ++ +P
Sbjct: 2 ASAVCAKPCVGSIAATSSSKFETNVASTKASFFSGRALRMTKVAAYTNGDMTISAVAAPQ 61
Query: 69 NEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGL------SKKPDDFSK 122
NE R ++ P S+ PE+L G +PGD+G+DP GL P+
Sbjct: 62 NE---------RPLWFPG-----SQAPEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKW 107
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI 182
+ EL+H RWAMLGAAG IPEA K G P D TL I
Sbjct: 108 FVQAELVHCRWAMLGAAGIFIPEALTKMGILNTPSWTVAGDADYFTDKTTL------FVI 161
Query: 183 NLVFAVIAE------IV---------------LDLEDKLHPGG-PFDPLGLAKDPDQFAL 220
L+ AE IV L D +PGG FDPLG + D L
Sbjct: 162 ELILFAWAEGRRWADIVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTSDAAKL 221
Query: 221 --LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 269
L+ +EIKNGRLAM A+LG +QA T GP++NL HL DP N + +
Sbjct: 222 KDLRTREIKNGRLAMLAVLGAIVQANYTHTGPIDNLVAHLVDPGHNTIFAL 272
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 98/193 (50%), Gaps = 29/193 (15%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S PE+L G +PGD+G+DP GL +P+ + E++H RWAMLGAAG IPE K G
Sbjct: 68 STAPEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIG 127
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------IV------------ 193
P W+ G + F + L+F AE I+
Sbjct: 128 ILNTPS--WYTAGEQTYFADQTTLF----IVELLFMGWAEGRRWADILKPGSVNTDPVFP 181
Query: 194 ---LDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
L D +PGG FDPLG A + L+ KEIKNGRLAM A++G + QA TG
Sbjct: 182 NNKLTGTDVGYPGGFWFDPLGWGAGGAAKVKELRTKEIKNGRLAMLAVMGAWFQAVYTGT 241
Query: 249 GPVENLAKHLSDP 261
GP++NL HL+DP
Sbjct: 242 GPIDNLFAHLADP 254
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 102/203 (50%), Gaps = 37/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE F G
Sbjct: 61 PAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 120
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 121 VPK--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFK 171
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 172 NYSLPPNECGYPGGIFNPLNFAATEEA----KEKELANGRLAMLAFLGFIVQHNVTGKGP 227
Query: 251 VENLAKHLSDPFANNLLTVISGN 273
+NL +HLSDP+ N ++ +S N
Sbjct: 228 FDNLLQHLSDPWHNTIIQTLSSN 250
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 102/210 (48%), Gaps = 40/210 (19%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S PE+L G +PGD+G+DP GLS PD E++H RWAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLG 103
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI-------- 189
AAG IPE K G P W+ G YF + +V ++
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVVELILIGWAEGRR 154
Query: 190 -AEIV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRL 231
A+I+ L D +PGG FDPLG P + L+ KEIKNGRL
Sbjct: 155 WADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRL 214
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
M A++G + Q TG GP++NL HL+DP
Sbjct: 215 TMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 111/238 (46%), Gaps = 36/238 (15%)
Query: 47 ALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDY 106
+ KK + P A V +A PDR ++ P S P +L G +PGD+
Sbjct: 33 SFLRGKKLRLRTYTSPTAARSVTVCVAA--DPDRPLWFPG-----STPPPWLDGSLPGDF 85
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL 166
G+DP GL P+ EL+H RWAMLGAAG IPE K G P W+ G +
Sbjct: 86 GFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYSAGEV 143
Query: 167 LLDGNTLNYFGKNIPINLVFAVIAE------IV---------------LDLEDKLHPGG- 204
+T F + L F AE I+ L D +PGG
Sbjct: 144 EYFTDTTTLF----IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGL 199
Query: 205 PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
FDPLG P++ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 200 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 60 SKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDD 119
+ P A V +A PDR ++ P S P +L G +PGD+G+DP GL P+
Sbjct: 46 TSPTAARSVTVCVAA--DPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPET 98
Query: 120 FSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN 179
EL+H RWAMLGAAG IPE K G P W+ G + +T F
Sbjct: 99 LRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPS--WYSAGEVEYFTDTTTLF--- 153
Query: 180 IPINLVFAVIAE------IV---------------LDLEDKLHPGG-PFDPLGLAK-DPD 216
+ L F AE I+ L D +PGG FDPLG P+
Sbjct: 154 -IVELFFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPE 212
Query: 217 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
+ L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 213 KIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 257
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 97/190 (51%), Gaps = 29/190 (15%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
PE+L G +PGD+G+DP GLS P+ EL+H+RWAMLGAAG IPE K G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------IV--------------- 193
P W+ G +T F + LVF AE I+
Sbjct: 61 TPS--WYTAGEQEYFTDTTTLF----IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNK 114
Query: 194 LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
L D +PGG FDPLG P + L+ KEIKNGRLAM A++G + Q TG GP+
Sbjct: 115 LTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 174
Query: 252 ENLAKHLSDP 261
+NL HL+DP
Sbjct: 175 DNLFAHLADP 184
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 107/209 (51%), Gaps = 41/209 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGD+G+DP GL + K+ Y E+IHARWAMLGAAG I PE
Sbjct: 56 YLDGSLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 113
Query: 152 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------ 190
A P+A WF++G + G+ Y+ P + F I
Sbjct: 114 AGLIPDATNIKWFESGVIPPAGSYNGYWAD--PYTIFFVEIVAMQFAELRRLQDFRYPGS 171
Query: 191 ---EIVLDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
+ L LE D +PGGPF + L K LK+KEIKNGRLAM AMLG+
Sbjct: 172 MGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGY 231
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANNLLT 268
QA +TG+GP +NL +HL+DP NN+LT
Sbjct: 232 GAQAVMTGKGPFQNLVEHLADPVNNNILT 260
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 103/210 (49%), Gaps = 40/210 (19%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
P+R I+ P S PE+L G +PGD+G+DP GLS P+ E++H RWAMLG
Sbjct: 49 PERPIWFPG-----STPPEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLG 103
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI-------- 189
AAG IPE K G P W+ G YF + +V ++
Sbjct: 104 AAGIFIPEFLTKIGILNTPS--WYTAGE-------QEYFTDKTTLFVVELILIGWAEGRR 154
Query: 190 -AEIV---------------LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRL 231
A+I+ L D +PGG FDPLG P + L+ KEIKNGRL
Sbjct: 155 WADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRL 214
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
AM A++G + Q TG GP++NL HL+DP
Sbjct: 215 AMLAVMGAWFQHIYTGTGPIDNLFAHLADP 244
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE G
Sbjct: 62 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 121
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV-----LDL-------EDKL-- 200
P+ W+ D + YF + + ++ ++ V D+ +D L
Sbjct: 122 VPK--WY-------DAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFK 172
Query: 201 ----------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+PGG F+PL + + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 173 QYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNVTGKGP 228
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ + G
Sbjct: 229 FDNLLQHLSDPWHNTIIQTLQG 250
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 109/238 (45%), Gaps = 46/238 (19%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
+ KAA P ++ + V E W+ + P +L G +P D+G+
Sbjct: 50 LRQSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGF 96
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-- 166
DP GL P+ EL+H RWAMLGAAG IPE K G P W+ G L
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGELEY 154
Query: 167 LLDGNTLNYFGKNIPINLVFAVIAE------IV---------------LDLEDKLHPGG- 204
D TL + ++F AE I+ L D +PGG
Sbjct: 155 FTDKTTL------FVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGL 208
Query: 205 PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
FDPLG P++ L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 209 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADP 266
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/203 (40%), Positives = 110/203 (54%), Gaps = 36/203 (17%)
Query: 102 VPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+PGDYG+DP GLS P+ ++ AY E+I+ R+AMLGAAG I PE K G
Sbjct: 15 LPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPA 73
Query: 156 PEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA-------------------EIVLD 195
A+ WF+TG + G T Y+ N + ++ + + L
Sbjct: 74 ETALPWFQTGVIPPAG-TYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFLG 132
Query: 196 LEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247
LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+F+Q VTG
Sbjct: 133 LEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTG 192
Query: 248 EGPVENLAKHLSDPFANNLLTVI 270
GP +NL HL+DP NN+LT +
Sbjct: 193 VGPYQNLLDHLADPVNNNVLTSL 215
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 101/190 (53%), Gaps = 25/190 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +P DYG+DP L PD + + EL+H RWAM+G AG ++P K GA
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMN 68
Query: 155 GPEAVWFKTGALLLDGNTL-------------------NYFGKNIPINLVFAVIAEIVLD 195
P VWF+ G + D +++ ++ P + I I D
Sbjct: 69 VP--VWFEAGKVANDNSSVPFSALLMVEFLAMGFVETKRWYDIKSPGSQGDGSIFGITDD 126
Query: 196 LEDKL--HPGGPF-DPLGLAKDPDQ-FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
+ K +PGG F DP G +K ++ + L+VKEI NGRLAM AM+GF+ Q TG+GPV
Sbjct: 127 FKGKSVGYPGGTFFDPFGFSKGSEESYKTLQVKEIANGRLAMVAMVGFWAQYAATGKGPV 186
Query: 252 ENLAKHLSDP 261
+NL H++DP
Sbjct: 187 DNLFDHIADP 196
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 104/210 (49%), Gaps = 54/210 (25%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YL GE+ GDYG+DP GL P Y+ EL+HARWAMLG AG ++ E
Sbjct: 42 PDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVAGVLVQEVVK------ 95
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIVLDL------------- 196
P+ +++ G +N+P +N+ + E +L
Sbjct: 96 -PDVYFYEAG-----------LPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNF 143
Query: 197 ----EDKL------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
ED + +PGG FDPLG +K L+ KEIKNGRLAM A +GF
Sbjct: 144 GSVNEDPIFKGNKVPNPEMGYPGGIFDPLGFSKG--NLKELQTKEIKNGRLAMVAYMGFV 201
Query: 241 LQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 202 LQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 111/224 (49%), Gaps = 44/224 (19%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL P+
Sbjct: 50 GVSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWL 100
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
EL+HARWAMLG +G +IPE K G W+ G ++ YF +
Sbjct: 101 AQAELMHARWAMLGVSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFADPTTLF 151
Query: 184 LVFAVI---------AEIV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQ 217
+V + A+IV +D+E KL +PGG FDP+ + P+
Sbjct: 152 IVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEP 211
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
+L+ KEIKNGRLAM A LGF QA G P++NL HL+DP
Sbjct: 212 VMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADP 255
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG +IPE K G
Sbjct: 56 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 116 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 166
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL A + K KE+ NGRLAM A L F +Q VTG+GP
Sbjct: 167 SYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLAFLIQHNVTGKGP 222
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ +SG
Sbjct: 223 FDNLLQHLSDPWHNTIIQTLSG 244
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 115/234 (49%), Gaps = 44/234 (18%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
VS V E L PDR ++ P S PE+L G +PG++G+DP GL P+
Sbjct: 50 GVSDVCEPLP----PDRPLWFPG-----SSPPEWLDGSLPGNFGFDPLGLGSDPELLKWL 100
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPIN 183
EL+HARWAMLG +G +IPE K G W+ G ++ YF +
Sbjct: 101 AQAELMHARWAMLGVSGILIPEILEKIGYV--KNFSWYNAG-------SVEYFADPTTLF 151
Query: 184 LVFAVI---------AEIV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQ 217
+V + A+IV +D+E KL +PGG FDP+ + P+
Sbjct: 152 IVQLALMGWVEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEP 211
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
+L+ KEIKNGRLAM A LGF QA G P++NL HL+DP N+ + +
Sbjct: 212 VMVLRTKEIKNGRLAMLAFLGFCFQAVYVGGSPIDNLMAHLADPGHVNIFSAFT 265
>gi|375152106|gb|AFA36511.1| light harvesting chlorophyll a/b-binding protein Lhcb1, partial
[Lolium perenne]
Length = 155
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 87/141 (61%), Gaps = 19/141 (13%)
Query: 143 IPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL----- 194
PE + G G EAVWFK G+ + L+Y G + + A+ A ++VL
Sbjct: 4 FPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVE 62
Query: 195 ----------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 244
++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA
Sbjct: 63 GYRVAGGPLGEIVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 122
Query: 245 VTGEGPVENLAKHLSDPFANN 265
VTG+GP+ENLA HL+DP NN
Sbjct: 123 VTGKGPLENLADHLADPVNNN 143
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 97/198 (48%), Gaps = 29/198 (14%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ +P YL G +PGD+G+DP L +P Y EL+HAR+AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 152 ANC-GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI------------------ 192
+ G W+ G + FG + ++ AE+
Sbjct: 125 FSWPGAGVAWYDAGKFQYFAPASSLFG----VQMLLFAWAELRRYQDFVKPGSANQDPIF 180
Query: 193 ----VLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+ D + +PGG FDP G +K LK KEIKNGRLAM A GF QAY TG
Sbjct: 181 SNNKLPDGNEPGYPGGIFDPFGWSK--GDMKSLKTKEIKNGRLAMLAFAGFAAQAYTTGT 238
Query: 249 GPVENLAKHLSDPFANNL 266
P++NLA HL+DP+A +
Sbjct: 239 TPLKNLATHLADPWATTV 256
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 102/202 (50%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ARWAMLG AG ++PE K G
Sbjct: 56 PAYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGMLLPEVLTKIGIIN 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P +W+ D YF + + ++ ++ V
Sbjct: 116 AP--LWY-------DAGKSTYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFK 166
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL +P A K KE+ NGRLAM A L F +Q +TG+GP
Sbjct: 167 NYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLAFMVQHGITGKGP 222
Query: 251 VENLAKHLSDPFANNLLTVISG 272
ENL +HLSDP+ N ++ +SG
Sbjct: 223 FENLLQHLSDPWHNTIIQTLSG 244
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 93/197 (47%), Gaps = 32/197 (16%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +PGDYG+DP L + D Y EL HARWAMLG AG PE FG +
Sbjct: 46 PSHLKGMLPGDYGFDPLNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELLTMFGVSD 105
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKN---IPINLVFAVIAEIV------------------ 193
P W A +G YF + + + AEI
Sbjct: 106 LPN--WHD--APFYNG----YFASSTTLFTVQMFMMNWAEIRRWQDIKNPGSVSEDPAFP 157
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L D +PGG F+P+ K D+ LK KEI NGRLAM A LG F+Q TG GP
Sbjct: 158 GNKLPAGDVGYPGGIFNPMNYGKSTDELKALKAKEIANGRLAMVAALGCFIQYDHTGVGP 217
Query: 251 VENLAKHLSDPFANNLL 267
VENL HLS+P NN+
Sbjct: 218 VENLTSHLSNPGVNNVF 234
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 103/202 (50%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P+ Y EL++ RWAMLG AG +IPE G
Sbjct: 55 PSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLIN 114
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV-----LDL-------EDKL-- 200
P+ W+ D + YF + + ++ ++ V D+ +D L
Sbjct: 115 VPK--WY-------DAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFK 165
Query: 201 ----------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+PGG F+PL + + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 166 QYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNVTGKGP 221
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ + G
Sbjct: 222 FDNLLQHLSDPWHNTIIQTLQG 243
>gi|149392733|gb|ABR26169.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 144
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 82/127 (64%), Gaps = 18/127 (14%)
Query: 157 EAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVL---------------DLED 198
EAVWFK G+ + L+Y G I + A+ A ++VL ++ D
Sbjct: 6 EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVD 65
Query: 199 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL
Sbjct: 66 PLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHL 125
Query: 259 SDPFANN 265
+DP NN
Sbjct: 126 ADPVNNN 132
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 97/198 (48%), Gaps = 29/198 (14%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+ +P YL G +PGD+G+DP L +P Y EL+HAR+AML AG ++PE G
Sbjct: 65 ATLPGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIG 124
Query: 152 ANC-GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI------------------ 192
+ G W+ G + FG + ++ AE+
Sbjct: 125 FSWPGAGVAWYDAGKFQYFAPASSLFG----VQMLLFAWAELRRYQDFVKPGSANQDPIF 180
Query: 193 ----VLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+ D + +PGG FDP G +K LK KEIKNGRLAM A GF QAY TG
Sbjct: 181 SNNKLPDGNEPGYPGGIFDPFGWSK--GDMKSLKTKEIKNGRLAMLAFAGFAAQAYTTGT 238
Query: 249 GPVENLAKHLSDPFANNL 266
P++NLA HL+DP+A +
Sbjct: 239 TPLKNLATHLADPWATTV 256
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 100/205 (48%), Gaps = 37/205 (18%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P YL G + GD G+DP L++ P+D + EL++ RWAMLG AG +IPE K G
Sbjct: 54 QSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 113
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV------------------- 193
PE W+ D YF + + ++ ++ V
Sbjct: 114 LNAPE--WY-------DAGKETYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 164
Query: 194 -----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 165 FKSYSLPPHECGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVTGK 220
Query: 249 GPVENLAKHLSDPFANNLLTVISGN 273
GP ENL +HL+DP+ N ++ ISG
Sbjct: 221 GPFENLQQHLADPWHNTIIQTISGQ 245
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 101/201 (50%), Gaps = 37/201 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F K G
Sbjct: 64 PGYLNGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 123
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
PE W+ D YF + + ++ ++ V
Sbjct: 124 VPE--WY-------DAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 174
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 175 QYSLPPNEVGYPGGIFNPLNFAPTVEA----KEKELANGRLAMLAFLGFVIQHNVTGKGP 230
Query: 251 VENLAKHLSDPFANNLLTVIS 271
ENL +HLSDP+ N ++ +S
Sbjct: 231 FENLLQHLSDPWHNTIVQTLS 251
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 107/218 (49%), Gaps = 41/218 (18%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++ P S+ PE+L G +PGD+G+DP GL P+ + EL+H RWAMLGA
Sbjct: 1 DRPLWFPG-----SKAPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGA 55
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI--------- 189
AG IPEA K G P W G YF + ++ ++
Sbjct: 56 AGIFIPEALTKAGILNTPS--WNVAG-------DQQYFADPTTLFVIELILFAWAEGRRW 106
Query: 190 AEIV---------------LDLEDKLHPGG-PFDPLGLA--KDPDQFALLKVKEIKNGRL 231
A+IV L D +PGG FDPLG KD + L+ KEIKNGRL
Sbjct: 107 ADIVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRL 166
Query: 232 AMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 269
AM A+LG +QA T GP++NL HL+DP N + +
Sbjct: 167 AMLAVLGAVVQANYTHTGPIDNLLAHLADPGHNTIFAL 204
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 107/209 (51%), Gaps = 41/209 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGD+G+DP GL + K+ Y E+IHARWAMLGAAG I PE
Sbjct: 43 YLDGTLPGDFGFDPLGLLDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLG--A 100
Query: 152 ANCGPEAV---WFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------ 190
A P+A WF++G + G+ Y+ P + F I
Sbjct: 101 AGLIPDATNIKWFESGVIPPAGSYDGYWAD--PYTIFFVEIVAMQFAELRRLQDFRYPGS 158
Query: 191 ---EIVLDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
+ L LE D +PGGPF + L K LK+KEIKNGRLAM AMLG+
Sbjct: 159 MGQQYFLGLEAIFKGSGDAAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGY 218
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANNLLT 268
QA +TG+GP +NL +HL+DP NN+LT
Sbjct: 219 GAQAVLTGKGPFQNLVEHLADPVNNNILT 247
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG +IPE K G
Sbjct: 64 PAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 123
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 124 APQ--WY-------DAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 174
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL A + K KE+ NGRLAM A L F +Q VTG+GP
Sbjct: 175 SYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLAFLIQHNVTGKGP 230
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ +SG
Sbjct: 231 FDNLLQHLSDPWHNTIIQTLSG 252
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 127/284 (44%), Gaps = 89/284 (31%)
Query: 50 SKKKAAPPAKSKPVAVSPVNEELAKWYGP--DRRIFLPEGLLDRSEIPEYLTGEVPGDYG 107
SKKKAAP SK GP DR ++ P ++ PE+L G + GDYG
Sbjct: 37 SKKKAAPKKVSK---------------GPSTDRPLWYPG-----AKAPEWLDGSLVGDYG 76
Query: 108 YDPFGLSKKPD-------------------------------------------DFSKYQ 124
+DPFGL K + +++
Sbjct: 77 FDPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYSEVFGLQRFR 136
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPIN 183
ELIH RWAML G + E W G + L++G++ Y G+ +P +
Sbjct: 137 ECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVEGSS--YLGQPLPFS 186
Query: 184 LVFAVIAEIV------------LDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGR 230
+ + E++ LD E +L+PGG FDPLGLA DP++ A L++ EIK+ R
Sbjct: 187 ITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKATLQLAEIKHAR 246
Query: 231 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
LAM LGF +QA TG+GP+ N A HLSDP ++ S ++
Sbjct: 247 LAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 109/236 (46%), Gaps = 67/236 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
PE+L G + GDYG+DPFGL K +
Sbjct: 122 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPF 181
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L++G
Sbjct: 182 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVELVEG 233
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGPF-DPLGLAKDPDQ 217
+T Y G+ +P ++ + E++ LD E +L+PGG F DPLGLA DP++
Sbjct: 234 ST--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEK 291
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 292 KATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 347
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 115/252 (45%), Gaps = 72/252 (28%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 118
DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 51 DRPLWFP-----GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGD 105
Query: 119 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+++ ELIH RWAML G I E
Sbjct: 106 VIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTG------ 159
Query: 156 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHP 202
W G + L+DG++ Y G+ +P ++ + E++ LD E +L+P
Sbjct: 160 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVVGYIEFQRNAELDSEKRLYP 215
Query: 203 GGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG F DPLGLA DP++ A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP
Sbjct: 216 GGKFFDPLGLASDPEKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDP 275
Query: 262 FANNLLTVISGN 273
++ S +
Sbjct: 276 LHTTIIDTFSSS 287
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 111/226 (49%), Gaps = 59/226 (26%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR+++ P G++ PEYL GE+ GDYG+DP GL P Y+ EL HARWAMLG
Sbjct: 19 DRKLWAP-GVV----APEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 73
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIV 193
AG ++ E P+ +++ G +N+P IN+ + E +
Sbjct: 74 AGVLVQEIVK-------PDVYFYEAG-----------LPQNLPEPFTNINMGGLLAWEFI 115
Query: 194 LDL-----------------EDKL------------HPGGPFDPLGLAKDPDQFALLKVK 224
L ED + +PGG FDP G +K F L+ K
Sbjct: 116 LMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSKG--DFKELQTK 173
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
EIKNGRLAM A + F LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 174 EIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 219
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 109/236 (46%), Gaps = 67/236 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
PE+L G + GDYG+DPFGL K +
Sbjct: 64 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEFADVKSTPF 123
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L++G
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVELVEG 175
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGPF-DPLGLAKDPDQ 217
+T Y G+ +P ++ + E++ LD E +L+PGG F DPLGLA DP++
Sbjct: 176 ST--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPEK 233
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 234 KATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 289
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 109/207 (52%), Gaps = 42/207 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGD+G+DP G+S P+ ++ AY E+IH RWAMLG AG + PE
Sbjct: 81 YLDGTLPGDFGFDPLGMSD-PEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGGM 139
Query: 151 GANCGPEA---VWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEI------------ 192
G PE+ VWF +GA+ G T +Y+ + I N+ AEI
Sbjct: 140 GVI--PESTGLVWFTSGAIPPQG-TFDYWANPMTIFWVNMCMMNFAEIKRGQDYWFPGSQ 196
Query: 193 ----VLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
+L E +PGG F+P L K D A ++ KE+KNGRLAM A LG
Sbjct: 197 AETPLLGWEKGFGGSGNPTYPGGKWFNPFNLGK--DDMASMQKKEVKNGRLAMMAFLGCM 254
Query: 241 LQAYVTGEGPVENLAKHLSDPFANNLL 267
+QA VTGEGP +N+ H++DPF N+L
Sbjct: 255 VQAAVTGEGPWKNICDHVADPFGANML 281
>gi|47026851|gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 89/170 (52%), Gaps = 23/170 (13%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGP+R +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 62 WYGPERVKYLGP---FSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 118
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK GA + L+Y G + + A+ A
Sbjct: 119 MLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQ 177
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQ-FALLKVKE 225
VL ++ D L+PGG FDPLGLA+ FA V E
Sbjct: 178 VLLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLARRSKTPFASSNVNE 227
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 113/235 (48%), Gaps = 44/235 (18%)
Query: 65 VSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQ 124
VS V E L PDR ++ P S PE+L G +PGD+G+DP GL PD +
Sbjct: 53 VSSVCEPLP----PDRPLWFPG-----SAPPEWLDGSLPGDFGFDPLGLGSDPDTLKWFA 103
Query: 125 AYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL 184
ELIH+RWAML G +IPE + G F + + YF + + +
Sbjct: 104 QAELIHSRWAMLAVTGILIPECLERLG---------FIENFSWYEAGSREYFADSTTLFV 154
Query: 185 VFAVI---------AEIV----LDLEDKL-----------HPGG-PFDPLGLAK-DPDQF 218
V+ A+++ +D+E K +PGG FD + + P+
Sbjct: 155 AQMVLMGWAEGRRWADLIKPGSVDIEPKYPHKVNPKPDVGYPGGLWFDFMMWGRGSPEPV 214
Query: 219 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
+L+ KEIKNGRLAM A +GF QA T + P+ENL HL+DP N+ + + +
Sbjct: 215 MVLRTKEIKNGRLAMLAFVGFCFQATYTSQDPIENLMAHLADPGHCNVFSAFTSH 269
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 117/259 (45%), Gaps = 48/259 (18%)
Query: 24 LNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIF 83
L +S SA A + A F+ AP + + V N EL W
Sbjct: 4 LTTTSVRAVSAVSARKANFAGSRASFAAPAKAPVSARASLKVQAANREL--W-------- 53
Query: 84 LPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFII 143
L D + P +L G +PGD+G+DP GL P+ YQ EL++ARWAM+ AG
Sbjct: 54 ----LKDSTVAPAHLDGTLPGDFGFDPLGLGADPERLKYYQEAELMNARWAMMAVAGICT 109
Query: 144 PEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKLHPG 203
E G W++ GA D +PIN + AV ++ LE + G
Sbjct: 110 TEILGIGGP-------WYEAGAAEYD----------LPINALLAVQFPVMGILELRRIRG 152
Query: 204 G------------PFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
P+DP+G+ + DQ AL KE+KNGRLAM A +G +QA V GPV
Sbjct: 153 WLATGKSGVNETFPWDPMGM--NGDQMAL---KEVKNGRLAMIAFVGIVVQAIVYRTGPV 207
Query: 252 ENLAKHLSDPFANNLLTVI 270
L H++DPF N+ T I
Sbjct: 208 AALKDHITDPFGCNMATNI 226
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 101/203 (49%), Gaps = 37/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP L++ P++ + EL++ RWAMLG AG ++PE F + G
Sbjct: 63 PAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTQIGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 123 VPK--WY-------DAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 174 QYSLPPNEVGYPGGIFNPLNFAPTAEA----KEKELANGRLAMLAFLGFIVQHNVTGKGP 229
Query: 251 VENLAKHLSDPFANNLLTVISGN 273
+NL +HLSDP+ N ++ GN
Sbjct: 230 FDNLLQHLSDPWHNTIIQTFGGN 252
>gi|449479523|ref|XP_004155624.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 153
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 85/135 (62%), Gaps = 23/135 (17%)
Query: 149 KFGANCGPEAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVL----------- 194
KFG EAVWFK G+ + L+Y G + + A+ A ++VL
Sbjct: 12 KFG-----EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAG 66
Query: 195 ----DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP
Sbjct: 67 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 126
Query: 251 VENLAKHLSDPFANN 265
+ENLA HL+DP NN
Sbjct: 127 LENLADHLADPVNNN 141
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 100/205 (48%), Gaps = 37/205 (18%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P YL G + GD G+DP L++ P+D + EL++ RWAMLG AG +IPE K G
Sbjct: 37 QSPAYLDGSLAGDNGFDPLALAEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGL 96
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV------------------- 193
PE W+ D YF + + ++ ++ V
Sbjct: 97 LNAPE--WY-------DAGKETYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPI 147
Query: 194 -----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+
Sbjct: 148 FKSYSLPPHECGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVTGK 203
Query: 249 GPVENLAKHLSDPFANNLLTVISGN 273
GP ENL +HL+DP+ N ++ ISG
Sbjct: 204 GPFENLQQHLADPWHNTIIQTISGQ 228
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 97/202 (48%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP L++ P D + EL++ RWAMLG AG +IPE K G
Sbjct: 58 PAYLDGSLAGDNGFDPLALAEDPADLRWFVQAELVNGRWAMLGVAGMLIPELLTKAGLLS 117
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
PE W+ D YF + + +V ++ V
Sbjct: 118 APE--WY-------DAGKETYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFK 168
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L D +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 169 SYSLPDHDCGYPGSVFNPLNFAPTLEN----KEKELANGRLAMLAFLGFLVQHNVTGKGP 224
Query: 251 VENLAKHLSDPFANNLLTVISG 272
ENL +HL+DP+ N ++ SG
Sbjct: 225 FENLMQHLADPWHNTIIQTFSG 246
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/199 (39%), Positives = 96/199 (48%), Gaps = 34/199 (17%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P++L GE+PGDYG+DP L K+P D Y EL H RWAMLG AG PE K G
Sbjct: 41 DAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMGI 100
Query: 153 NCGPEAVWFKT---GALLLDGNTLNYFGKNIPINLVFAVIAEI--VLDLE---------- 197
+ P W D TL + + ++ AE+ D+
Sbjct: 101 SDLPN--WHDAPNYQGYFTDATTLFW------VQMLMMNWAEVRRWQDMRKPGSVNEDPA 152
Query: 198 ---DKL------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
+KL +PGG FDPLG AK LK KEI NGRLAM A G +Q TG
Sbjct: 153 FSGNKLPSGIVGYPGGIFDPLGYAK--GDLNKLKAKEIANGRLAMVAFAGIMVQYDHTGV 210
Query: 249 GPVENLAKHLSDPFANNLL 267
GPV NL H+SDP NN+
Sbjct: 211 GPVANLVAHMSDPAHNNVF 229
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 99/197 (50%), Gaps = 36/197 (18%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
S P++L G +PGDYG+DP GL + + YQ EL+HARWAMLG AG PE F
Sbjct: 48 STPPKHLDGTMPGDYGFDPLGLGEDKAALAWYQQAELMHARWAMLGVAGMAAPEIFGNPL 107
Query: 152 ANCGPEAVW----FKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKLHP----- 202
+ GP W F G + D NTL + + AE V +D +P
Sbjct: 108 VD-GPLPNWADAPFYDG-YIADANTL------FVVQMFLMNWAE-VRRWQDMKNPGSVHA 158
Query: 203 ------------------GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 244
GG F+P+G+AK ++ L+ KEI NGRLAM A +G F+Q
Sbjct: 159 DPYDESRKCTGTDVGYPGGGLFNPMGMAKSAEEEKTLRTKEIANGRLAMVAAMGCFIQHD 218
Query: 245 VTGEGPVENLAKHLSDP 261
VTG GPV NL HL+DP
Sbjct: 219 VTGTGPVANLKAHLADP 235
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 108/238 (45%), Gaps = 46/238 (19%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
+ KAA P ++ + V E W+ + P +L G +P D+G+
Sbjct: 50 LRQSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGF 96
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTG--AL 166
DP GL P+ EL+H RWAMLGAAG IPE K G P W+ G
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILNTPS--WYTAGEQEY 154
Query: 167 LLDGNTLNYFGKNIPINLVFAVIAE------IV---------------LDLEDKLHPGG- 204
D TL + ++F AE I+ L D +PGG
Sbjct: 155 FTDKTTL------FVVEMIFLGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGL 208
Query: 205 PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
FDPLG P++ L+ KEIKNGRLAM A++G + QA TG GP++NL HL+DP
Sbjct: 209 WFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLADP 266
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 105/208 (50%), Gaps = 37/208 (17%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGDYG+DP GLS P+ K+ AY ELIH RWAMLG AG + PE
Sbjct: 61 YLDGSLPGDYGFDPLGLSD-PEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGGM 119
Query: 151 GANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI--VLDLEDKLHPG-- 203
G P+ VWFK G + G T +Y+ I + A + I + +D +PG
Sbjct: 120 GII--PQETGLVWFKAGMIPAQG-TYDYWASPFTIFWINAFLMNIAELRRAQDYWNPGSM 176
Query: 204 GPFDPLGLAK------DP--------------DQFALLKVKEIKNGRLAMFAMLGFFLQA 243
G D GL K DP A +K KEIKNGRLAM A G QA
Sbjct: 177 GKQDFAGLEKMLGGSGDPAYPGGFFNFMKQGEKDMAAMKTKEIKNGRLAMMACFGCGAQA 236
Query: 244 YVTGEGPVENLAKHLSDPFANNLLTVIS 271
+TGEGPV+NL H+ DPF +NLL S
Sbjct: 237 CMTGEGPVKNLVDHVIDPFGHNLLVNFS 264
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 117/246 (47%), Gaps = 72/246 (29%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 118
DR ++ P ++ PE+L G + GDYG+DPFGL K +
Sbjct: 49 DRPLWFP-----GAKAPEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGD 103
Query: 119 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+++ ELIH RWAML G + E
Sbjct: 104 IIGTRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG------ 157
Query: 156 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHP 202
W G + L++G++ Y G+ +P ++ + E++ LD E +L+P
Sbjct: 158 --VTWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYP 213
Query: 203 GGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG F DPLGLA+DP++ A+L++ EIK+ RLAM A LGF +QA VTG+GP+ N A HLSDP
Sbjct: 214 GGKFFDPLGLAEDPEKKAVLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLNNWATHLSDP 273
Query: 262 FANNLL 267
++
Sbjct: 274 LHTTII 279
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 120/250 (48%), Gaps = 36/250 (14%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY----GPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ + A A + P V E + W G R LP + +++P YL
Sbjct: 16 KPVS--RRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPS-WMPGADLPGYLN 72
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC-GPEA 158
G +PGD+G+DP L + P Y EL++AR+AML AG ++PE + G + G
Sbjct: 73 GTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGFSWPGAGV 132
Query: 159 VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI----------------------VLDL 196
W+ G + FG + L+FA + EI + D
Sbjct: 133 AWYDAGKFEYFAPASSLFGVQM---LLFAWV-EIRRYQDFVKPGSANQDPIFTNNKLPDG 188
Query: 197 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 256
+ +PGG FDP G +K LK+KEIKNGRLAM A GF QAY TG P++NL+
Sbjct: 189 NEPGYPGGIFDPFGWSK--GDIKSLKLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNLST 246
Query: 257 HLSDPFANNL 266
HL+DP++ +
Sbjct: 247 HLADPWSTTV 256
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 109/237 (45%), Gaps = 67/237 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
PEYL G + GDYG+DPFGL K +
Sbjct: 64 PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPF 123
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L++G
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVELVEG 175
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGP-FDPLGLAKDPDQ 217
++ Y G+ +P ++ + E + LD E +L+PGG FDPLGLA DP++
Sbjct: 176 SS--YLGQPLPFSITTLIWIEALVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEK 233
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
A L++ EIK+ RLAM LGF +QA VTG+GP+ N A HLSDP ++ S ++
Sbjct: 234 KATLQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 120/250 (48%), Gaps = 36/250 (14%)
Query: 44 KPVALFSKKKAAPPAKSKPVAVSPVNEELAKWY----GPDRRIFLPEGLLDRSEIPEYLT 99
KPV+ + A A + P V E + W G R LP + +++P YL
Sbjct: 16 KPVS--RRSSVAVKASAVPENVKEAREWIDAWKSKSGGAKRDAALPS-WMPGADLPGYLN 72
Query: 100 GEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC-GPEA 158
G +PGD+G+DP L + P Y EL++AR+AML AG ++PE + G + G
Sbjct: 73 GTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARFAMLAVAGILVPELLSNIGFSWPGAGV 132
Query: 159 VWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI----------------------VLDL 196
W+ G + FG + L+FA + EI + D
Sbjct: 133 AWYDAGKFEYFAPASSLFGVQM---LLFAWV-EIRRYQDFVKPGSANQDPIFTNNKLPDG 188
Query: 197 EDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 256
+ +PGG FDP G +K LK+KEIKNGRLAM A GF QAY TG P++NL+
Sbjct: 189 NEPGYPGGIFDPFGWSK--GDIKSLKLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNLST 246
Query: 257 HLSDPFANNL 266
HL+DP++ +
Sbjct: 247 HLADPWSTTV 256
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 100/202 (49%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D + YF + + +V ++ V
Sbjct: 119 APQ--WY-------DASKSEYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFK 169
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 170 SYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNVTGKGP 225
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ SG
Sbjct: 226 FDNLLQHLSDPWHNTIIQTFSG 247
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 109/237 (45%), Gaps = 67/237 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
PEYL G + GDYG+DPFGL K +
Sbjct: 64 PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPF 123
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L++G
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVELVEG 175
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGP-FDPLGLAKDPDQ 217
++ Y G+ +P ++ + E++ LD E +L+PGG FDPLGLA DP++
Sbjct: 176 SS--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEK 233
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP ++ S ++
Sbjct: 234 KATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 114/248 (45%), Gaps = 73/248 (29%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD------------------- 118
PDR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 46 PDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAG 100
Query: 119 ------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
+++ ELIH RWAML G + E
Sbjct: 101 DVIGTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI---- 156
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV-------------LDLEDKL 200
W G + L++G++ Y G+ +P ++ + E++ LD E +L
Sbjct: 157 ----TWQDAGKVELVEGSS--YLGQPLPFSITTLIWIEVLVIGYIVEFQRNAELDPEKRL 210
Query: 201 HPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
+PGG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLS
Sbjct: 211 YPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLS 270
Query: 260 DPFANNLL 267
DP +
Sbjct: 271 DPLHTTIF 278
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 109/236 (46%), Gaps = 67/236 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
PE+L G + GDYG+DPFGL K +
Sbjct: 66 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 125
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L+DG
Sbjct: 126 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDG 177
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGP-FDPLGLAKDPDQ 217
++ Y G+ +P ++ + E++ LD E +L+PGG FDPLGLA DP++
Sbjct: 178 SS--YLGQPLPFSISTLIWIEVLVVGYIEFQRNAELDSEKRLYPGGKYFDPLGLAADPEK 235
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 236 RAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 291
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 109/237 (45%), Gaps = 67/237 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
PEYL G + GDYG+DPFGL K +
Sbjct: 64 PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGTRTELADVKSTPF 123
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L++G
Sbjct: 124 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVELVEG 175
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGP-FDPLGLAKDPDQ 217
++ Y G+ +P ++ + E++ LD E +L+PGG FDPLGLA DP++
Sbjct: 176 SS--YLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEK 233
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
A L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP ++ S ++
Sbjct: 234 KATLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSSS 290
>gi|145078859|tpg|DAA05887.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Euglena gracilis]
Length = 1036
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 99/186 (53%), Gaps = 36/186 (19%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P++LTGE PGD G+DP GLS P F + + E+ H R AMLG G I+PE F G
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSTDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGP-- 224
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL------------DLEDKLHP 202
WF L G L G + VIA + D D+ +P
Sbjct: 225 -----WFD-----LSGFNLTRLGL-----VALQVIAPLEYWRGNRGFSWNGDDGPDQSYP 269
Query: 203 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
G FDPL L D K+KEIKNGRLAM AMLG +Q+++TG+ P+ NL++HLS+P
Sbjct: 270 G--FDPLRLTDDET-----KLKEIKNGRLAMTAMLGLEVQSHITGKSPLVNLSEHLSNPA 322
Query: 263 ANNLLT 268
+ N+LT
Sbjct: 323 SVNILT 328
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 91/194 (46%), Gaps = 46/194 (23%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGN----- 782
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLDLE---------------- 197
WF+ + D N FAV+A ++V LE
Sbjct: 783 ---GAWFQ----IWDKVDFNR----------FAVVALQVVAPLEYWRGNGGFLWNDEETV 825
Query: 198 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
D+ +PG FDPL L + K EIKNGRLAM M G +Q++VTG+ P+ NL H
Sbjct: 826 DQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNLIDH 878
Query: 258 LSDPFANNLLTVIS 271
LS P N+ T +S
Sbjct: 879 LSHPLTANIGTNLS 892
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 541 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 598
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE---------DKLHP 202
WF+ G +DG L + I + A E D+ +P
Sbjct: 599 ------GAWFEAGD-SVDGLKLGF------ITMAIAAPTEYWRGQGGFNWQKGELDRSYP 645
Query: 203 GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
G FDPL L D + E+KNGRLA+ A+ G Q TGE P+ NL+ HL++P
Sbjct: 646 G--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPI 698
Query: 263 ANNLLT 268
N+ T
Sbjct: 699 GANITT 704
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 87/181 (48%), Gaps = 26/181 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L GE GD G+DP GL+ PD F + + E+ H R AML G ++P+ K
Sbjct: 359 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYLGK----- 413
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDK-----LHPGGPFDPL 209
+W++ K + I + E+ +++ ++PG FDPL
Sbjct: 414 ---GIWYEA------AQNAGIGLKEVAIFTAAYGVFEVARGVKENSDPTTIYPG--FDPL 462
Query: 210 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTV 269
L D K EIKNGRLA+ A+LGF +Q +V G P+ NLA+HL P N+
Sbjct: 463 NLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADS 517
Query: 270 I 270
I
Sbjct: 518 I 518
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 26/132 (19%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 915 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 972
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLE---------DKLHP 202
WF+ G +DG L + I + A E D+ +P
Sbjct: 973 ------GAWFEAGD-SVDGLKLGF------ITMAIAAPTEYWRGQGGFNWQKGELDRSYP 1019
Query: 203 GGPFDPLGLAKD 214
G FDPL L D
Sbjct: 1020 G--FDPLNLTTD 1029
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 206 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
FDPL LA DPD +A ++V E+ +GRLAM M+G +
Sbjct: 931 FDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIV 966
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 102/197 (51%), Gaps = 27/197 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDL-------EDKL------- 200
P+ W+ G ++ F I L +V D+ +D +
Sbjct: 116 APQ--WYDAGKATYFASSSTLF--VIEFILFHSVEIRRWQDIKNPGCVNQDPIFKSYSLP 171
Query: 201 -----HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
+PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +GP +NL
Sbjct: 172 PHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQKGPFDNLL 227
Query: 256 KHLSDPFANNLLTVISG 272
+HLSDP+ N ++ +SG
Sbjct: 228 QHLSDPWHNTIIQTLSG 244
>gi|145078891|tpg|DAA05888.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Euglena gracilis]
Length = 1081
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/179 (41%), Positives = 100/179 (55%), Gaps = 22/179 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P++LTGE PGD G+DP GLSK P F + + E+ H R AMLG G I+PE F G
Sbjct: 167 PDHLTGEFPGDRGFDPLGLSKDPVVFERMRISEVFHGRLAMLGIVGCIVPELFFSQGP-- 224
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPI-----NLVFAVIAEIVLDLEDKLHPGGPFDPL 209
WF + L L P+ N F+ + D D+ +PG FDPL
Sbjct: 225 -----WFDLSSFNLTRLGLVALQVIAPLEYWRGNRGFSWNGD---DGPDQSYPG--FDPL 274
Query: 210 GLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
L + K+KEIKNGRLAM AMLG +Q+++TG+ P+ NL++HLS+P + N+LT
Sbjct: 275 RLTDEET-----KLKEIKNGRLAMTAMLGLEVQSHITGKSPLVNLSEHLSNPASVNILT 328
Score = 100 bits (249), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 91/194 (46%), Gaps = 46/194 (23%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE GD G+DP GL+ P F + Q E+ H R +ML G ++PE
Sbjct: 728 PRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELLGN----- 782
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLDLE---------------- 197
WF+ + D N FAV+A ++V LE
Sbjct: 783 ---GAWFQ----IWDKVDFNR----------FAVVALQVVAPLEYWRGNGGFLWNDEETI 825
Query: 198 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
D+ +PG FDPL L + K EIKNGRLAM M G +Q++VTG+ P+ NL H
Sbjct: 826 DQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMIGMFGLEVQSHVTGKSPITNLIDH 878
Query: 258 LSDPFANNLLTVIS 271
LS P N+ T +S
Sbjct: 879 LSHPLTANIGTNLS 892
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 90/187 (48%), Gaps = 33/187 (17%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 915 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 972
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL----------DLEDKLH 201
WF+ G +DG L + I + A E DL D+ +
Sbjct: 973 ------GAWFEAGD-SVDGLKLGF------ITMAIAAPTEYWRGQGGFNWQKGDL-DRSY 1018
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
PG FDPL L D + E+KNGRLA+ A+ G Q TGE P+ NL HL++P
Sbjct: 1019 PG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLTAHLANP 1071
Query: 262 FANNLLT 268
N+ T
Sbjct: 1072 LGANITT 1078
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 91/187 (48%), Gaps = 33/187 (17%)
Query: 92 SEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151
+E P +LTGE P D G+DP L+ PD +++ + E+ H R AML G I+PE K
Sbjct: 541 AEPPAHLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCMVGCIVPELLGK-- 598
Query: 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL----------DLEDKLH 201
WF+ G +DG L + I + A E DL D+ +
Sbjct: 599 ------GAWFEAGD-SVDGLKLGF------ITMAIAAPTEYWRGQGGFNWQKGDL-DRSY 644
Query: 202 PGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
PG FDPL L D + E+KNGRLA+ A+ G Q TGE P+ NL+ HL++P
Sbjct: 645 PG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANP 697
Query: 262 FANNLLT 268
N+ T
Sbjct: 698 IGANIAT 704
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 31/197 (15%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
+R ++ P L P +LTGE GD G+DP GL+ PD F + + E+ H R AML
Sbjct: 348 ERPLWFPNTL-----APSWLTGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAI 402
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLED 198
G ++P+ K +W++ K + I + E+ +++
Sbjct: 403 VGALVPDYLGK--------GIWYEA------AQNAGIGLKEVAIFTAAYGVFEVARGVKE 448
Query: 199 K-----LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 253
++PG FDPL L D K EIKNGRLA+ A+LGF +Q +V G P+ N
Sbjct: 449 NSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLAN 501
Query: 254 LAKHLSDPFANNLLTVI 270
LA HL P +N+ I
Sbjct: 502 LADHLQQPLQHNIADSI 518
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 98/202 (48%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G DP GL++ P+ Y EL++ RWAMLG AG IPE G
Sbjct: 62 PSYLNGSLPGDNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLIN 121
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D + YF + + ++ ++ V
Sbjct: 122 VPK--WY-------DAGKVEYFASSXTLFVIEFILFHYVELRRWQDIKYPGSVNQDPIXK 172
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL + + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 173 SYSLPPNEVGYPGGIFNPLNFSPSMEA----KEKELANGRLAMLAFLGFVVQHNVTGKGP 228
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ + G
Sbjct: 229 FDNLLQHLSDPWHNTIIQTLQG 250
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 107/206 (51%), Gaps = 40/206 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGD+G+DP G+S ++ AY E+IH RWAMLG AG + PE G
Sbjct: 97 YLDGTLPGDFGFDPLGMSDPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVLGGMG 156
Query: 152 ---ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEI------------- 192
A+ G VWFK+GA+ G T +Y+ I N+V AE+
Sbjct: 157 IIPADTG--LVWFKSGAIPPQG-TFDYWADPTTIFWVNMVLMNFAEVKRGQDYWYPGSQG 213
Query: 193 ---VLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL 241
++ E +PGG F+ L K A ++ KEIKNGRLAM A LG +
Sbjct: 214 ETPLMGWEKGFAGSGAPAYPGGKYFNFANLGK--TDMAKMQKKEIKNGRLAMMAFLGIAV 271
Query: 242 QAYVTGEGPVENLAKHLSDPFANNLL 267
QA TGEGP +N+ H+SDPFANN+L
Sbjct: 272 QAVATGEGPFKNIVDHISDPFANNML 297
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 100/203 (49%), Gaps = 35/203 (17%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
+L G +PGD+G+DPFGL PD + ELIH+RWAML G IIPE + G
Sbjct: 78 WLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELIHSRWAMLAVTGIIIPECLERLG----- 132
Query: 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI---------AEIV----LDLEDKL--- 200
F D + YF + + + V+ A+++ +D+E K
Sbjct: 133 ----FIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYPHK 188
Query: 201 --------HPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+PGG FD + + P+ +L+ KEIKNGRLAM A LGF QA T + P
Sbjct: 189 VNPKPDAGYPGGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDP 248
Query: 251 VENLAKHLSDPFANNLLTVISGN 273
+ENL HL+DP N+ + + +
Sbjct: 249 IENLMAHLADPGHCNVFSAFTSH 271
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 102/202 (50%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 116 APQ--WY-------DAGKATYFASSNTLFVIEFILFHYVEIRQWQDIKNPGCVNQDPIFK 166
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L ++ +PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +GP
Sbjct: 167 SYRLPSDECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQKGP 222
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ +SG
Sbjct: 223 FDNLLQHLSDPWHNTIIQTLSG 244
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 117/253 (46%), Gaps = 72/253 (28%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 118
DR ++ P ++ P++L G + GDYG+DPFGL K +
Sbjct: 51 DRPLWFPG-----AKSPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGD 105
Query: 119 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+++ ELIH RWAML G + E
Sbjct: 106 VIGTRTEEAAPKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG------ 159
Query: 156 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHP 202
W G + L+DG++ Y G+ +P ++ + E++ LD E +L+P
Sbjct: 160 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYP 215
Query: 203 GGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP
Sbjct: 216 GGKFFDPLGLASDPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 275
Query: 262 FANNLLTVISGNA 274
++ S ++
Sbjct: 276 LHTTIIDTFSSSS 288
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 110/226 (48%), Gaps = 59/226 (26%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR+++ P G++ PEYL G++ GDYG+DP GL P Y+ EL HARWAMLG
Sbjct: 31 DRKLWAP-GVV----APEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 85
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----INLVFAVIAEIV 193
AG ++ E P+ +++ G +N+P IN+ + E +
Sbjct: 86 AGVLVQEIVK-------PDVYFYEAG-----------LPQNLPEPFTNINMGGLLAWEFI 127
Query: 194 LDL-----------------EDKL------------HPGGPFDPLGLAKDPDQFALLKVK 224
L ED + +PGG FDP G +K L+ K
Sbjct: 128 LMHWVEVRRWQDYKNFGSVNEDPIFKGNKVPNPEMGYPGGIFDPFGFSKG--NLKELQTK 185
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
EIKNGRLAM A + F LQA TG+GP+ L+ HLS+PF NN+L I
Sbjct: 186 EIKNGRLAMIAYMAFILQAQATGKGPLAALSAHLSNPFGNNILKNI 231
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 99/202 (49%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + +V ++ V
Sbjct: 119 APQ--WY-------DAGKSEYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFK 169
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 170 SYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNVTGKGP 225
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ SG
Sbjct: 226 FDNLLQHLSDPWHNTIIQTFSG 247
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 101/202 (50%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 116 APQ--WY-------DAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFK 166
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +GP
Sbjct: 167 SYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQKGP 222
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ +SG
Sbjct: 223 FDNLLQHLSDPWHNTIIQTLSG 244
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 105/217 (48%), Gaps = 42/217 (19%)
Query: 96 EYLTGEVPGDYGYDPFGL-------SKKPDDFSK---YQAYELIHARWAMLGAAGFIIPE 145
+YL G +PGDYG+DP GL + F Q E+IHARWAMLGAAG I PE
Sbjct: 68 KYLDGTLPGDYGFDPLGLLDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIAPE 127
Query: 146 AFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI------------ 192
K G AV WF+TG + G +++ P L F + I
Sbjct: 128 ILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWAD--PFTLFFIEVVAIQFAELKRLQDYK 185
Query: 193 ---------VLDLE-------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFA 235
L LE + +PGGP F+ K + LK+ EIKNGRLAM A
Sbjct: 186 NPGSQSRQYFLGLEGLFKGSDNPAYPGGPFFNFANFGKTEAEMKKLKLNEIKNGRLAMLA 245
Query: 236 MLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 272
M G+ QA +TG+GP +NL HL+DP NL+T + G
Sbjct: 246 MFGYGAQAVITGDGPFDNLLAHLADPTGANLITNLGG 282
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 111/229 (48%), Gaps = 30/229 (13%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
++S V E L GPDR ++ P + P +L G +PGD+G+DP G +P+ +
Sbjct: 56 SLSTVCEPL----GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWF 106
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI- 182
EL+H RWAML AG +IPE K+G E W+ G + F + +
Sbjct: 107 AQAELMHGRWAMLAVAGILIPEILQKWGFM--EEFSWYTAGEREYFADPWTLFVTQMALM 164
Query: 183 -----NLVFAVIAEIVLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 224
+ +D+E + +PGG FD + P+ +L+ K
Sbjct: 165 GWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTK 224
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
EIKNGRLAM A +GF+ Q TG+GP++NL HL+DP N+ + + +
Sbjct: 225 EIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTSH 273
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 97/193 (50%), Gaps = 35/193 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +P D+G+DP GL +P+ + E++H+RWAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI---------AEIV------------ 193
P W+ G YF + +V ++ A+I+
Sbjct: 133 TP--FWYTAGE-------QEYFTDQTTLFIVEMILLGWAEGRRWADILKPGSVNTDPVFP 183
Query: 194 ---LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
L D +PGG FDP G P++ L+ KEIKNGRLAM A++G + QA TG
Sbjct: 184 NNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWFQAVYTGA 243
Query: 249 GPVENLAKHLSDP 261
P++NL HL+DP
Sbjct: 244 RPIDNLLAHLADP 256
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 101/202 (50%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 116 APQ--WY-------DAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFK 166
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL +P A K KE+ NGRLAM A LGF +Q VT +GP
Sbjct: 167 SYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFLVQHNVTQKGP 222
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ +SG
Sbjct: 223 FDNLLQHLSDPWHNTIIQTLSG 244
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 97/193 (50%), Gaps = 35/193 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +P D+G+DP GL +P+ + E++H+RWAMLGAAG IPEA K G
Sbjct: 73 PAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIVHSRWAMLGAAGIFIPEALTKLGILN 132
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVI---------AEIV------------ 193
P W+ G YF + +V ++ A+I+
Sbjct: 133 TP--FWYTAGE-------QEYFTDQTTLFIVEMILLGWAEGRRWADILKPGSVNTDPVFP 183
Query: 194 ---LDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
L D +PGG FDP G P++ L+ KEIKNGRLAM A++G + QA TG
Sbjct: 184 NNKLTGTDVGYPGGFWFDPFGWGTASPEKLKELRTKEIKNGRLAMLAVMGAWFQAVYTGA 243
Query: 249 GPVENLAKHLSDP 261
P++NL HL+DP
Sbjct: 244 RPIDNLLAHLADP 256
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 112/249 (44%), Gaps = 72/249 (28%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSK-------KPDDF----------- 120
DR ++ P ++ PEYL G + GDYG+DPFGL K PD
Sbjct: 53 DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDSLDQNLAQNLAGE 107
Query: 121 -------------------------SKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+++ ELIH RWAML G + E
Sbjct: 108 VIGTRFEDADIKSTPLQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG------ 161
Query: 156 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHP 202
W G + L+DG++ Y G+ +P + + E++ LD E +L+P
Sbjct: 162 --VTWQDAGKVELVDGSS--YLGQPLPFTITTLIWIEVLVIGYIEFQRNAELDPEKRLYP 217
Query: 203 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG FDPLGLA DP++ L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP
Sbjct: 218 GGSYFDPLGLAADPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDP 277
Query: 262 FANNLLTVI 270
+ +
Sbjct: 278 LHTTIFDTL 286
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 103/203 (50%), Gaps = 38/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ G YF + + ++ +++ V
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A + K KEI NGRL M A LGF +Q VTG+GP
Sbjct: 174 QYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGP 228
Query: 251 VENLAKHLSDPFANNLLTVISGN 273
+NL +H+SDP+ N ++ + GN
Sbjct: 229 FDNLLQHISDPWHNTIVQTLGGN 251
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 110/207 (53%), Gaps = 42/207 (20%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNKF 150
YL G +PGD+G+DP G+S P+ ++ AY E+IH RWAMLG AG + PE +
Sbjct: 74 YLDGTLPGDFGFDPLGMSD-PEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEILGQ- 131
Query: 151 GANCGPEA---VWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEI------------ 192
A PE+ VWF +GA+ G T +Y+ + I N+ AEI
Sbjct: 132 -AGLIPESTGLVWFTSGAIPPQG-TFDYWANPMTIFWVNMCMMNFAEIKRGQDYWYPGSQ 189
Query: 193 ----VLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ E +PGG F+ GL K D A ++ KEIKNGRLAM A LG
Sbjct: 190 AEQPLMGWEKGFAGSGNPAYPGGKYFNFAGLGK--DDMAKMQKKEIKNGRLAMMAFLGCM 247
Query: 241 LQAYVTGEGPVENLAKHLSDPFANNLL 267
+QA VTGEGP +N+ H++DPF N+L
Sbjct: 248 VQAVVTGEGPWKNICDHVADPFGANML 274
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 111/229 (48%), Gaps = 30/229 (13%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
++S V E L GPDR ++ P + P +L G +PGD+G+DP G +P+ +
Sbjct: 53 SLSTVCEPL----GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWF 103
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI- 182
EL+H RWAML AG +IPE K+G E W+ G + F + +
Sbjct: 104 AQAELMHGRWAMLAVAGILIPEILQKWGFM--EEFSWYTAGEREYFADPWTLFVTQMALM 161
Query: 183 -----NLVFAVIAEIVLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 224
+ +D+E + +PGG FD + P+ +L+ K
Sbjct: 162 GWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTK 221
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
EIKNGRLAM A +GF+ Q TG+GP++NL HL+DP N+ + + +
Sbjct: 222 EIKNGRLAMLAFVGFWFQVVYTGQGPLDNLFAHLADPGHCNIFSAFTSH 270
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 101/203 (49%), Gaps = 38/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ Y EL++ARWAMLG AG ++PE K G
Sbjct: 56 PAYLDGSLAGDNGFDPLGLAEDPENLRWYVQAELVNARWAMLGVAGVLVPEVLTKIGIIN 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 116 APQ--WY-------DAGKSTYFASSSTLFVIEFILFHYVEIRRWQDIIKNPGCVNQDPIF 166
Query: 194 ----LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
L + +PG F+PL +P A K KE+ NGRLAM A LGF +Q +TG+G
Sbjct: 167 KNYSLPPHECGYPGSVFNPLNF--EPTLEA--KEKELANGRLAMLAFLGFMVQHGITGKG 222
Query: 250 PVENLAKHLSDPFANNLLTVISG 272
P ENL +HL DP+ N ++ +SG
Sbjct: 223 PFENLLQHLFDPWHNTIIQTLSG 245
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 106/201 (52%), Gaps = 37/201 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P+YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PDYLDGSLPGDNGFDPLGLAEDPENLKWFIQAELVNGRWAMLGVAGMLLPEVFTSIGILN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV-----LDL-------EDKL-- 200
P+ W+ D YF + + ++ ++ V D+ +D +
Sbjct: 123 VPK--WY-------DAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 201 ----------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+PGG F+PL A P + A K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 174 SYSLPPNKCGYPGGIFNPLNFA--PTEEA--KEKELANGRLAMLAFLGFIVQHNVTGKGP 229
Query: 251 VENLAKHLSDPFANNLLTVIS 271
+NL +HL DP+ N ++ +S
Sbjct: 230 FDNLLQHLFDPWHNTIIQTLS 250
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 115/252 (45%), Gaps = 72/252 (28%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 118
DR ++ P + P++L G + GDYG+DPFGL K +
Sbjct: 54 DRPVWYPGAI-----SPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGD 108
Query: 119 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+++ ELIH RWAML G + E
Sbjct: 109 VIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG------ 162
Query: 156 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHP 202
W G + L+DG++ Y G+ +P ++ + E++ LD E +L+P
Sbjct: 163 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYP 218
Query: 203 GGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG F DPLGLA DP++ A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP
Sbjct: 219 GGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 278
Query: 262 FANNLLTVISGN 273
++ S +
Sbjct: 279 LHTTIIDTFSSS 290
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 75/230 (32%), Positives = 109/230 (47%), Gaps = 67/230 (29%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
PE+L G + GDYG+DPFGL K +
Sbjct: 63 PEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGGEVKSTPF 122
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E+ W G + L++G
Sbjct: 123 QPYTEVFGLQRFRECELIHGRWAMLATLGALAVESLTG--------VTWQDAGKVELIEG 174
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGPF-DPLGLAKDPDQ 217
++ Y G+ +P ++ + E++ LD E +L+PGG F DPLGLA DP++
Sbjct: 175 SS--YLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGKFFDPLGLAADPEK 232
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 267
A+L++ EIK+ RLAM LGF +QA VTG+GP+ N A HLSDP ++
Sbjct: 233 KAVLQLAEIKHARLAMIGFLGFAVQAAVTGKGPLNNWATHLSDPLHTTII 282
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/268 (34%), Positives = 125/268 (46%), Gaps = 40/268 (14%)
Query: 19 MLGNPLNVSSAVRTSA-PGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYG 77
MLG N SS +A PGA S+F A S + A+S S A
Sbjct: 1 MLGLVSNSSSFTAVAALPGAPRASSFLGGAGRSGRLLLRQAESSSARASFAVRAAA---- 56
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR I+ P S P +L G +PGD+G+DP GL P+ +L+H RWAMLG
Sbjct: 57 PDRPIWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLG 111
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G +T F I L+ AE
Sbjct: 112 AAGIFIPEFLTKIGILNTPS--WYTAGEHQYFTDTTTLF----IIELILIGWAEGRRWAD 165
Query: 192 IVLD----------LEDKLH------PGGPF-DPLGLAK-DPDQFALLKVKEIKNGRLAM 233
I+++ + ++H P G + DPLG P++ L+ KEIKNGR+AM
Sbjct: 166 IIINPGCVNTDPIFPQQQVHGHRRGEPCGLWLDPLGWGTVSPEKIKELRTKEIKNGRVAM 225
Query: 234 FAMLGFFLQAYVTGEGPVENLAKHLSDP 261
A++G + QA TG GP++N H++DP
Sbjct: 226 LAVMGAWFQAEHTGTGPIDNFFAHVADP 253
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 109/236 (46%), Gaps = 67/236 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
P++L G + GDYG+DPFGL K +
Sbjct: 65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L+DG
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDG 176
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGPF-DPLGLAKDPDQ 217
++ Y G+ +P ++ + E++ LD E +L+PGG F DPLGLA DP++
Sbjct: 177 SS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 234
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 235 TAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 113 bits (283), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 99/202 (49%), Gaps = 37/202 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD G+DP GL++ P++ + EL++ RWAMLG AG +IPE K G
Sbjct: 59 PSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLIN 118
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + +V ++ V
Sbjct: 119 APQ--WY-------DAGKSEYFASSSTLFVVEFILFXYVEIRRWQDIKNPGSVNQDPIFK 169
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PG F+PL A + K KE+ NGRLAM A LGF +Q VTG+GP
Sbjct: 170 SYSLPPHECGYPGSVFNPLNFAPTLEA----KEKELANGRLAMLAFLGFLIQHNVTGKGP 225
Query: 251 VENLAKHLSDPFANNLLTVISG 272
+NL +HLSDP+ N ++ SG
Sbjct: 226 FDNLLQHLSDPWHNTIIQTFSG 247
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 100/200 (50%), Gaps = 37/200 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ Y EL++ RWAMLG AG ++PE +G
Sbjct: 63 PTYLDGSLPGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 123 VPK--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L D +PGG F+PL +P A + KEI NGRLAM A LGF +Q VTG+GP
Sbjct: 174 QYSLPPNDVGYPGGIFNPLNF--EPTLEA--REKEIANGRLAMLAFLGFIVQHNVTGKGP 229
Query: 251 VENLAKHLSDPFANNLLTVI 270
+N +H+SDP+ N ++ +
Sbjct: 230 FDNFMQHISDPWHNTIVQTL 249
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 107/208 (51%), Gaps = 41/208 (19%)
Query: 96 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 149
YL G +PGDYG+DP GLS P+ ++ AY E+IH RWAMLG AG + PE
Sbjct: 69 SYLDGSLPGDYGFDPLGLSD-PEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPEVLGG 127
Query: 150 FGANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVI---AEI----------- 192
G P+ VW+K G + G T +Y+ I + A + AE+
Sbjct: 128 LGII--PQETGLVWYKAGMIPAQG-TYDYWANPFTIFWINAALMNFAELRRAQDYWNPGS 184
Query: 193 -----VLDLEDKL-------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
++ E L +PGG F+ +G K A ++VKEIKNGRLAM A
Sbjct: 185 MGKQELIGWEKMLGGSGEPAYPGGFFNIMGQGK--SDMAKMRVKEIKNGRLAMMACFACG 242
Query: 241 LQAYVTGEGPVENLAKHLSDPFANNLLT 268
QA +TGEGPV+NL H+SDPF +NLL
Sbjct: 243 AQAVMTGEGPVKNLIDHVSDPFGHNLLV 270
>gi|227202590|dbj|BAH56768.1| AT5G54270 [Arabidopsis thaliana]
Length = 162
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 85/153 (55%), Gaps = 25/153 (16%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL 194
MLGA G I PE K+ E VWFK G+ + L+Y G NLV A VL
Sbjct: 1 MLGAFGCITPEVLQKWVRVDFKEPVWFKAGSQIFSEGGLDYLGNP---NLVHAQSILAVL 57
Query: 195 DLE---------------------DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLA 232
+ + L+PGG FDPLGLA DP FA LKVKEIKNGRLA
Sbjct: 58 GFQVILMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLA 117
Query: 233 MFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
MF+M GFF+QA VTG+GP+ENL HL +P ANN
Sbjct: 118 MFSMFGFFVQAIVTGKGPLENLLDHLDNPVANN 150
>gi|59710172|gb|AAW88575.1| light harvesting protein [Eleusine coracana subsp. coracana]
Length = 64
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/64 (85%), Positives = 58/64 (90%)
Query: 217 QFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAER 276
Q ALLKVKEIKNGRLAMF+M FF+QAYVTG GPVENLAKHLSDPF NNLLTVISG AER
Sbjct: 1 QAALLKVKEIKNGRLAMFSMFAFFIQAYVTGGGPVENLAKHLSDPFGNNLLTVISGAAER 60
Query: 277 APTL 280
AP+L
Sbjct: 61 APSL 64
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 102/203 (50%), Gaps = 37/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP L++ P++ + EL++ RWA LG AG ++PE G
Sbjct: 63 PNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGVAGMLLPEVLTNIGLIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ D YF + + ++ ++ V
Sbjct: 123 VPK--WY-------DAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A P + A K +E+ NGRLAM A LGF +Q VTG+GP
Sbjct: 174 QYSLPPNEVGYPGGIFNPLNFA--PTEEA--KERELANGRLAMLAFLGFIVQHNVTGKGP 229
Query: 251 VENLAKHLSDPFANNLLTVISGN 273
+NL +HLSDP+ N ++ +SGN
Sbjct: 230 FDNLLQHLSDPWHNTIVQTLSGN 252
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G +PGD+G+DP L + Y+ EL + RWAMLG AG I P + G
Sbjct: 43 PAHLDGTLPGDFGFDPLNLGVNKEALDWYRNAELQNGRWAMLGVAGIIFPAELTRVGLLN 102
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI-----------------VLDLE 197
P+ W G + + F + + EI L E
Sbjct: 103 VPD--WADAGKVYAESENAIPFASLLMVQFFLFNFVEIKRWEDIKKPGSQAEAGSFLGFE 160
Query: 198 DKL-------HPGGPFDPLGLAKDP-DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249
+PGGPF+PLGL + K +EI+NGRLAM A LGF Q TG+G
Sbjct: 161 SAFKGSGVSGYPGGPFNPLGLGNSSKESMDDFKWREIRNGRLAMMAFLGFLAQHAATGKG 220
Query: 250 PVENLAKHLSDPFANNLLT 268
P++NLA HL+DP+ANN +
Sbjct: 221 PLDNLADHLADPWANNFCS 239
>gi|55668304|gb|AAV54188.1| chloroplast major light-harvesting complex II protein m9
[Haematococcus pluvialis]
Length = 152
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/142 (46%), Positives = 83/142 (58%), Gaps = 19/142 (13%)
Query: 142 IIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL---- 194
+ PE G + G E VWFK GA + LNY G I N+V + +++L
Sbjct: 1 VTPELLAANGVSFG-EPVWFKAGAQIFQDGGLNYLGNPSLIHAQNIVATLAVQVILMGLV 59
Query: 195 -----------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQA 243
+ D L+PG FDPLGLA DPD FA LKVKEIKNGRLAMF+ GFF+QA
Sbjct: 60 EGYRMNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQA 119
Query: 244 YVTGEGPVENLAKHLSDPFANN 265
VTG+GP++NL HL++P NN
Sbjct: 120 IVTGKGPIQNLTDHLANPAENN 141
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 110/229 (48%), Gaps = 30/229 (13%)
Query: 64 AVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKY 123
++S V E L GPDR ++ P + P +L G +PGD+G+DP G +P+ +
Sbjct: 56 SLSTVCEPL----GPDRPVWFPG-----TAPPPWLDGSLPGDFGFDPLGFGSEPESLRWF 106
Query: 124 QAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI- 182
EL+H RWAML AG +IPE K+G E W+ G + F + +
Sbjct: 107 AQAELMHGRWAMLAVAGILIPEILQKWGFM--EEFSWYTAGEREYFADPWTLFVTQMALM 164
Query: 183 -----NLVFAVIAEIVLDLEDKL-----------HPGG-PFDPLGLAK-DPDQFALLKVK 224
+ +D+E + +PGG FD + P+ +L+ K
Sbjct: 165 GWVEGRRWMDYLNPGSVDIEPRFPNRKNPTPDVGYPGGLWFDWGNWGRGSPEPVMVLRTK 224
Query: 225 EIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
EIKNGRLAM A +GF+ Q TG+GP+ NL HL+DP N+ + + +
Sbjct: 225 EIKNGRLAMLAFVGFWFQVVYTGQGPLGNLFAHLADPGHCNIFSAFTSH 273
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 114/253 (45%), Gaps = 72/253 (28%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 118
DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 53 DRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGE 107
Query: 119 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+++ ELIH RWAML G + E
Sbjct: 108 IIGTRFETGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG------ 161
Query: 156 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHP 202
W G + L+DG++ Y G+ +P ++ + E++ LD E +L+P
Sbjct: 162 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYP 217
Query: 203 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP
Sbjct: 218 GGSYFDPLGLASDPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 277
Query: 262 FANNLLTVISGNA 274
+ S ++
Sbjct: 278 LHTTIFDTFSSSS 290
>gi|226500382|ref|NP_001141936.1| uncharacterized protein LOC100274085 [Zea mays]
gi|194706506|gb|ACF87337.1| unknown [Zea mays]
gi|414884911|tpg|DAA60925.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
gi|414884912|tpg|DAA60926.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 164
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 91/163 (55%), Gaps = 31/163 (19%)
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP-------INLVFA 187
ML A G ++PE + FG E VW+K G L G+ L+Y G IP +V
Sbjct: 1 MLAALGVVVPELLDLFGLVHFVEPVWWKVGYAKLQGDNLDYLG--IPGFRIAGGQGVVVI 58
Query: 188 VIAEIVLDL---------------------EDKLHPGGP-FDPLGLAKDPDQFALLKVKE 225
I + +L + D +PGGP FDPLGL+KDP F LKVKE
Sbjct: 59 AICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLGLSKDPVAFEDLKVKE 118
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
IKNGRLAM A GF++QA VTG+GPV+NL +HLSDP NN+L+
Sbjct: 119 IKNGRLAMVAWFGFYIQAAVTGKGPVQNLVEHLSDPLNNNILS 161
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 93 EIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+ P YL G + GD G+DP L++ P+D + ++++ RWAMLG AG +IPE K G
Sbjct: 41 QSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGL 100
Query: 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKLHPGG-PFDPL-- 209
PE W + L G + + + + + + +D +PG DP+
Sbjct: 101 MNAPE--WLR-----LPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFK 153
Query: 210 ------------GLAKDPDQFALL--KVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255
G +P FA L K KE+ NGRLAM A LGF +Q V G+GP ENL
Sbjct: 154 SYSLPPHECGYPGRVFNPLNFAPLENKEKELANGRLAMLAFLGFLVQHNVHGKGPFENLQ 213
Query: 256 KHLSDPFANNLLTVISGN 273
+HL+DP+ N ++ ISG
Sbjct: 214 QHLADPWHNTIIQTISGQ 231
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/187 (39%), Positives = 96/187 (51%), Gaps = 27/187 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G + GD +DP LS + + EL+H RWAML G +PE ++ GA
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKN----------IPINLVFAVI------AEIV--LDL 196
E +W+K G +L+G +NY G I I AV+ A V L
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLGIEGFHIAGASGIIGIAFCQAVLMGGPEYARYVGIESL 344
Query: 197 E--------DKLHP-GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247
E D +P GGPFDP L+ D ++ L+V E+K+GRLAM AMLG F QA+VT
Sbjct: 345 EPVGVYLPGDTNYPGGGPFDPFNLSADAERDVELRVSEVKHGRLAMIAMLGVFAQAFVTR 404
Query: 248 EGPVENL 254
EGPV N+
Sbjct: 405 EGPVANV 411
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 114/253 (45%), Gaps = 72/253 (28%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 118
DR ++ P + P+YL G + GDYG+DPFGL K +
Sbjct: 54 DRPLWFPGAV-----APDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGG 108
Query: 119 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+++ ELIH RWAML G + E
Sbjct: 109 IIGTRFESSEVKSTPLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG------ 162
Query: 156 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHP 202
W G + L+DG++ Y G+ +P ++ + E++ LD E +L+P
Sbjct: 163 --VTWQDAGKVELVDGSS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYP 218
Query: 203 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP
Sbjct: 219 GGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDP 278
Query: 262 FANNLLTVISGNA 274
+ G++
Sbjct: 279 LHTTIFDTFGGSS 291
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/296 (30%), Positives = 126/296 (42%), Gaps = 87/296 (29%)
Query: 40 PSTFKPVALFS----KKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIP 95
P + VA F K KAA P K ++S DR ++ P + P
Sbjct: 22 PQNGRIVARFGFGGGKPKAAVPKKVAKTSISS-----------DRPLWFPGAV-----AP 65
Query: 96 EYLTGEVPGDYGYDPFGLSKKPD------------------------------------- 118
+YL G + GDYG+DPFGL K +
Sbjct: 66 DYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGTRFESSDVKSTPLQ 125
Query: 119 ------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDGN 171
+++ ELIH RWAML G + E W G + L+DG+
Sbjct: 126 PYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVELVDGS 177
Query: 172 TLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGP-FDPLGLAKDPDQF 218
+ Y G+ +P + + E++ LD E +L+PGG FDPL LA DP++
Sbjct: 178 S--YLGQPLPFTISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLALAADPEKK 235
Query: 219 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP + G++
Sbjct: 236 ERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFGGSS 291
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 92/190 (48%), Gaps = 34/190 (17%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
+L G +PGD+G+DP LS P+ EL HARWAMLG AG + PE K G P
Sbjct: 51 HLDGSLPGDFGFDPLSLSADPEMRKWMVQAELQHARWAMLGVAGAVAPELLTKIGVADLP 110
Query: 157 EAVWFKTGALLLDGNTLNYFGKNIP---INLVFAVIAEI--VLDLE-------------- 197
V D T Y+ P I + AE+ D++
Sbjct: 111 NWV---------DAGTYQYWAPAGPLFFIQMAMFNWAEVRRWQDMKNPGSMNTDPLFGYN 161
Query: 198 ------DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
D +PGG FD LG AKDP + LK+KEIKNGRLAM A LG Q TG+GPV
Sbjct: 162 SNDTNTDVGYPGGLFDKLGYAKDPAKAKELKLKEIKNGRLAMVAFLGICAQYVQTGQGPV 221
Query: 252 ENLAKHLSDP 261
ENL H++ P
Sbjct: 222 ENLFSHIASP 231
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 114/233 (48%), Gaps = 41/233 (17%)
Query: 77 GPDR---RIFLPEGLLDRSEI------PEYLTGEVPGDYGYDPFGLSKKPD-----DFSK 122
GPDR R+ P G RS I YL G +PGDYG+DP GL D
Sbjct: 5 GPDRIADRMPPPPGGSKRSLIFASKQSLSYLDGTLPGDYGFDPLGLMDPEGAGGFIDPQW 64
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIP 181
E+I+ R+AMLGAAG I PE + G A+ WF++G + GN +
Sbjct: 65 LPYAEIINGRFAMLGAAGAIAPEVLGRIGLIPQETAIPWFQSGVIPPVGNYSYWADPYTL 124
Query: 182 INLVFAVIA------------------EIVLDLEDKL-------HPGGP-FDPLGLAKDP 215
L A++ + L LE L +PGGP F+ LG K+
Sbjct: 125 FVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKFLGGSGNPAYPGGPIFNFLGFGKNE 184
Query: 216 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLT 268
+ LKVKE+KNGRLAM A+LG+F QA TG GP +NL HL+DP NN+LT
Sbjct: 185 KELQELKVKEVKNGRLAMMAVLGYFTQAIFTGVGPFQNLLDHLADPVHNNVLT 237
>gi|167997433|ref|XP_001751423.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697404|gb|EDQ83740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 244
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 60/71 (84%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D ++PGG FDPLGLA DPD FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 162 EVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 221
Query: 255 AKHLSDPFANN 265
HL+DP ANN
Sbjct: 222 NDHLADPVANN 232
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 107/237 (45%), Gaps = 67/237 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
P+YL G + GDYG+DPFGL K +
Sbjct: 61 PDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDIIGTRFEPGEVKSTPF 120
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L+DG
Sbjct: 121 QPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDG 172
Query: 171 NTLNYFGKNIPINLVFAVIAEIVL------------DLEDKLHPGGP-FDPLGLAKDPDQ 217
++ Y G+ +P ++ + E++L D E +L+PGG FDPLGLA DP++
Sbjct: 173 SS--YLGQPLPFSMTTLIWIEVLLIGYIEFQRNAELDSEKRLYPGGSYFDPLGLASDPEK 230
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP + S ++
Sbjct: 231 KERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFSSSS 287
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 107/203 (52%), Gaps = 32/203 (15%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GDYG+DP L ++P Y EL+H R+AMLGAAG I+ K G
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGF 99
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI----------------VLDLED 198
PE W+ G ++++ N ++ F + L AE L D
Sbjct: 100 -PE--WYDAGKVVVEKNNID-FPTLLITQLYLMGWAETKRWYDFKNPGSQGDGSFLGFTD 155
Query: 199 KL------HPGGPF-DPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+ +PGG F DP+GL++ D D++ K KEIKNGRLAM A LGF Q TG+GP
Sbjct: 156 EFKGLENGYPGGRFFDPMGLSRGDADKYKEYKQKEIKNGRLAMIACLGFAAQYAATGKGP 215
Query: 251 VENLAKHLSDP----FANNLLTV 269
++NLA HL+DP FA N +++
Sbjct: 216 LDNLADHLADPNHVNFATNGVSI 238
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 104/209 (49%), Gaps = 41/209 (19%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGD+G+DP GL + K+ Y E+IH RWAMLGAAG I PE
Sbjct: 57 YLDGTLPGDFGFDPLGLLDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILG--A 114
Query: 152 ANCGPEA---VWFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------ 190
A PE VW+++G + G+ Y+ P + F I
Sbjct: 115 AGLIPEKTNIVWYESGVIPPAGSYDGYWAD--PYTIFFIEIVAMQFAELRRLQDFRYPGS 172
Query: 191 ---EIVLDLE-------DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239
+ L LE D +PGGPF + L K LK+KEIKNGRLAM AMLG+
Sbjct: 173 MGKQYFLGLEKIFAGSGDPAYPGGPFFNLFNLGKTEAAMKELKLKEIKNGRLAMLAMLGY 232
Query: 240 FLQAYVTGEGPVENLAKHLSDPFANNLLT 268
QA +T EGP +NL HL+DP NN+LT
Sbjct: 233 GAQATLTREGPFQNLLDHLADPVNNNILT 261
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 108/234 (46%), Gaps = 67/234 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
P++L G + GDYG+DPFGL K +
Sbjct: 61 PDWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMAGEIIGTRTEVADVKATPF 120
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L++G
Sbjct: 121 QPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG--------VTWQDAGKVELVEG 172
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGP-FDPLGLAKDPDQ 217
++ Y G+ +P ++ + E++ LD E +L+PGG FDPLGLA DP++
Sbjct: 173 SS--YLGQPLPFSMTTLIWIEVLVIGFIEFQRNAELDPEKRLYPGGKYFDPLGLAADPEK 230
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ +
Sbjct: 231 KATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFT 284
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 103/212 (48%), Gaps = 32/212 (15%)
Query: 89 LDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148
L S P +L GE+PGD+G+DP GL PD ++ EL+H+RWAM AG ++ E
Sbjct: 32 LPGSTPPAHLKGELPGDFGFDPLGLGANPDSLKWFRESELVHSRWAMAAVAGILVQEIVR 91
Query: 149 KFGANCGPEAVWFKTGA-----------LLLDGNTLNYFGKNIPINLVFA-------VIA 190
P+ W+ G+ L + +++ +L + +
Sbjct: 92 -------PDVFWYSAGSQVESPLGPLGLLAFEFFCMHWVELRRWQDLRKPGSVDQDPIFS 144
Query: 191 EIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
+ L + +PGG F P P A LKVKEIKNGRLAM A +GF + A VTG+GP
Sbjct: 145 QYKLPPHEPGYPGGVFAPF----IPGDLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGP 200
Query: 251 VENLAKHLSDPFANNLLT---VISGNAERAPT 279
+ L +HL+DP+ + + V+ G A P
Sbjct: 201 IAALQEHLADPWGTTIFSKAAVVPGQAIAPPC 232
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 108/236 (45%), Gaps = 67/236 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
P++L G + GDYG+DPFGL K +
Sbjct: 65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L+DG
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDG 176
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGPF-DPLGLAKDPDQ 217
++ Y G+ +P ++ + E++ LD E +L+PGG F DPL LA DP++
Sbjct: 177 SS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLSLAADPEK 234
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
A L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP ++ S +
Sbjct: 235 TAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFSSS 290
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 97/215 (45%), Gaps = 45/215 (20%)
Query: 49 FSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGY 108
+ KAA P ++ + V E W+ + P +L G +P D+G+
Sbjct: 50 LRQSKAAMPRRAAVIVSEAVQTERPLWF-------------PGTTPPPWLDGSLPADFGF 96
Query: 109 DPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLL 168
DP GL P+ EL+H RWAMLGAAG IPE K G
Sbjct: 97 DPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGIL--------------- 141
Query: 169 DGNTLNYFGKNIPINLVFAVIAEIVLDLEDKLHPGG-PFDPLGLAK-DPDQFALLKVKEI 226
NT F N L D +PGG FDPLG P++ L+ KEI
Sbjct: 142 --NTDPIFPNN-------------KLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEI 186
Query: 227 KNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
KNGRLAM +++G + QA TG GP++NL HL+DP
Sbjct: 187 KNGRLAMLSVMGAWFQAEYTGTGPIDNLLAHLADP 221
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 100/198 (50%), Gaps = 29/198 (14%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE K G
Sbjct: 56 PTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKIGLID 115
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--LDLEDKLHPGG-PFDPL-- 209
P+ W+ D YF + + ++ ++ V +D +PG DP+
Sbjct: 116 APQ--WY-------DAGKATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFK 166
Query: 210 ------------GLAKDPDQFA---LLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
+ P F K KE+ NGRLAM A LGF +Q VT +GP +NL
Sbjct: 167 SYSLPPHECGYPAASSTPLNFEPTLEAKEKELANGRLAMLAFLGFLVQHNVTQKGPFDNL 226
Query: 255 AKHLSDPFANNLLTVISG 272
+HLSDP+ N ++ +SG
Sbjct: 227 LQHLSDPWHNTIIQTLSG 244
>gi|224928|prf||1204205C protein 1C,chlorophyll binding
Length = 165
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 83 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 142
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 143 ADHLADPVNNN 153
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 98/205 (47%), Gaps = 43/205 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL+ P + Y EL + RWAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKL-------------- 200
P +W+ D + YF P + +F + + +E +
Sbjct: 119 AP--LWY-------DAGKVEYFA---PASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDP 166
Query: 201 -------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247
+PGG F+PL + + K KE+ NGRLAM A LGF +Q+ VT
Sbjct: 167 IFKGYSLPPNEVGYPGGIFNPLNFPANEE----YKEKELANGRLAMLAFLGFIIQSNVTH 222
Query: 248 EGPVENLAKHLSDPFANNLLTVISG 272
+GP ENL HLSDP+ + ++ I G
Sbjct: 223 QGPFENLLTHLSDPWHHTIVQSIQG 247
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 98/205 (47%), Gaps = 43/205 (20%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G +PGD G+DP GL+ P + Y EL + RWAM+G AG +IPE K G
Sbjct: 59 PGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLTKIGVIN 118
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKL-------------- 200
P +W+ D + YF P + +F + + +E +
Sbjct: 119 AP--LWY-------DAGKVEYFA---PASTLFVIEFLMFHYVEVRRWQDIKYPGSVNQDP 166
Query: 201 -------------HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247
+PGG F+PL + + K KE+ NGRLAM A LGF +Q+ VT
Sbjct: 167 IFKGYSLPPNEVGYPGGIFNPLNFPANEE----YKEKELANGRLAMLAFLGFIIQSNVTH 222
Query: 248 EGPVENLAKHLSDPFANNLLTVISG 272
+GP ENL HLSDP+ + ++ I G
Sbjct: 223 QGPFENLLTHLSDPWHHTIVQSIQG 247
>gi|115821|sp|P14275.1|CB2C_SOLLC RecName: Full=Chlorophyll a-b binding protein 1C, chloroplastic;
AltName: Full=LHCII type I CAB-1C; Short=LHCP; Flags:
Precursor
Length = 265
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 243 ADHLADPVNNN 253
>gi|297740653|emb|CBI30835.3| unnamed protein product [Vitis vinifera]
Length = 148
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 84/151 (55%), Gaps = 38/151 (25%)
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 176
P+ F+K + E+IH RWAMLGA G + PE ++ G G EAVWFK GA
Sbjct: 22 PNTFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGA----------- 69
Query: 177 GKNIPINLVFAVIAEIVL--DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMF 234
+ +E++L +E GGP L +VKEIKNGRLAMF
Sbjct: 70 ----------QIFSEVILMGAVEGYRIAGGP--------------LGEVKEIKNGRLAMF 105
Query: 235 AMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
+M GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 106 SMFGFFVQAIVTGKGPLENLADHLADPVNNN 136
>gi|159138421|gb|ABW89213.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138423|gb|ABW89214.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138425|gb|ABW89215.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138429|gb|ABW89217.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138433|gb|ABW89219.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138437|gb|ABW89221.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138439|gb|ABW89222.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138441|gb|ABW89223.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138443|gb|ABW89224.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138445|gb|ABW89225.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138447|gb|ABW89226.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138451|gb|ABW89228.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138453|gb|ABW89229.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138455|gb|ABW89230.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138457|gb|ABW89231.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 34 EVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 93
Query: 255 AKHLSDPFANN 265
A HL+DP ANN
Sbjct: 94 ADHLADPVANN 104
>gi|159138427|gb|ABW89216.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138431|gb|ABW89218.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
gi|159138435|gb|ABW89220.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 34 EVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 93
Query: 255 AKHLSDPFANN 265
A HL+DP ANN
Sbjct: 94 ADHLADPVANN 104
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 105/204 (51%), Gaps = 32/204 (15%)
Query: 97 YLTGEVPGDYGYDPFGLS--KKPDDFSKYQAY---ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGDYG+DP GL + F Q E+I+ R+AMLGAAG I PE + G
Sbjct: 16 YLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRIG 75
Query: 152 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------EI 192
A+ WF++G + GN + L A++ +
Sbjct: 76 LIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQY 135
Query: 193 VLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 244
L LE L +PGGP F+ LG K+ + LKVKE+KNGRLAM A+LG+F QA
Sbjct: 136 FLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLGYFTQAI 195
Query: 245 VTGEGPVENLAKHLSDPFANNLLT 268
TG GP +NL HL+DP NN+LT
Sbjct: 196 FTGVGPFQNLLDHLADPVHNNVLT 219
>gi|82074|pir||A24039 chlorophyll a/b-binding protein 1A precursor - tomato (fragments)
gi|224926|prf||1204205A protein 1A,chlorophyll binding
Length = 165
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 83 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 142
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 143 ADHLADPVNNN 153
>gi|115823|sp|P14276.1|CB2E_SOLLC RecName: Full=Chlorophyll a-b binding protein 3A, chloroplastic;
AltName: Full=LHCII type I CAB-3A; Short=LHCP; Flags:
Precursor
Length = 267
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 255 AKHLSDPFANN 265
A H++DP NN
Sbjct: 245 ADHIADPVNNN 255
>gi|82076|pir||E24039 chlorophyll a/b-binding protein 3A precursor - tomato (fragments)
gi|224930|prf||1204205E protein 3A,chlorophyll binding
Length = 167
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 85 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 144
Query: 255 AKHLSDPFANN 265
A H++DP NN
Sbjct: 145 ADHIADPVNNN 155
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 110/252 (43%), Gaps = 70/252 (27%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 118
DR ++ P + PEYL G + GDYG+DP GL K +
Sbjct: 50 DRPLWFPGAV-----APEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGD 104
Query: 119 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+++ ELIH RWAML G + E
Sbjct: 105 IIGTRFEPGEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG------ 158
Query: 156 PEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL------------DLEDKLHPG 203
W G + L+ N +Y G+ +P ++ + E++L D E +L+PG
Sbjct: 159 --VTWQDAGKVELE-NGSSYLGQPLPFSMTTLIWIEVLLIGYIEFQRNAELDPEKRLYPG 215
Query: 204 GP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPF 262
G FDPLGLA DP++ L++ EIK+ RLAM LGF +QA TG+GP+ N A HLSDP
Sbjct: 216 GSYFDPLGLASDPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 275
Query: 263 ANNLLTVISGNA 274
+ S ++
Sbjct: 276 HTTIFDTFSSSS 287
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 105/204 (51%), Gaps = 32/204 (15%)
Query: 97 YLTGEVPGDYGYDPFGLS--KKPDDFSKYQAY---ELIHARWAMLGAAGFIIPEAFNKFG 151
YL G +PGDYG+DP GL + F Q E+I+ R+AMLGAAG I PE + G
Sbjct: 16 YLDGTLPGDYGFDPLGLMDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRIG 75
Query: 152 ANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------EI 192
A+ WF++G + GN + L A++ +
Sbjct: 76 LIPQETAIPWFQSGVIPPVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQY 135
Query: 193 VLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAY 244
L LE L +PGGP F+ LG K+ + LKVKE+KNGRLAM A+LG+F QA
Sbjct: 136 FLGLEKFLGGSGNPAYPGGPIFNFLGFGKNEKELQELKVKEVKNGRLAMMAVLGYFTQAI 195
Query: 245 VTGEGPVENLAKHLSDPFANNLLT 268
TG GP +NL HL+DP NN+LT
Sbjct: 196 FTGVGPFQNLLDHLADPVHNNVLT 219
>gi|115824|sp|P14277.1|CB2F_SOLLC RecName: Full=Chlorophyll a-b binding protein 3B, chloroplastic;
AltName: Full=LHCII type I CAB-3B; Short=LHCP; Flags:
Precursor
Length = 267
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 185 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
Query: 255 AKHLSDPFANN 265
A H++DP NN
Sbjct: 245 ADHIADPVNNN 255
>gi|82077|pir||F24039 chlorophyll a/b-binding protein 3B precursor - tomato (fragments)
gi|224931|prf||1204205F protein 3B,chlorophyll binding
Length = 167
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/71 (70%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 85 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 144
Query: 255 AKHLSDPFANN 265
A H++DP NN
Sbjct: 145 ADHIADPVNNN 155
>gi|115816|sp|P14274.1|CB2A_SOLLC RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type I CAB-1A; Short=LHCP; Flags:
Precursor
Length = 265
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 183 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 243 ADHLADPVNNN 253
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 94/195 (48%), Gaps = 18/195 (9%)
Query: 90 DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149
D + P +L G +PGD+G+DP GL P YQ EL++ARWAM+ AG E
Sbjct: 55 DSTVAPAHLDGTLPGDFGFDPLGLGADPQRLKYYQEAELMNARWAMMAVAGITATEVL-- 112
Query: 150 FGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKLHPGG----P 205
GP W+ GA D L P+ + + + + D G P
Sbjct: 113 ---GIGP--AWYDVGAADFDFPPLALLAIQFPVMGILEL--KRIRGWLDTGKSGVVDQFP 165
Query: 206 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
+DP+G+ D + VKEIKNGRLAM A +G +QA V EGPV L H++DPF N
Sbjct: 166 WDPMGMNSDG-----MAVKEIKNGRLAMIAFVGIVVQAIVYREGPVAALKDHVTDPFGCN 220
Query: 266 LLTVISGNAERAPTL 280
+ + I E +L
Sbjct: 221 MASNIMSIPEHLASL 235
>gi|115790|sp|P15192.1|CB22_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 2;
AltName: Full=Chlorophyll a-b binding protein type II 2;
Short=CAB; AltName: Full=LHCP
gi|169376|gb|AAA33776.1| chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/127 (51%), Positives = 79/127 (62%), Gaps = 18/127 (14%)
Query: 157 EAVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVL---------------DLED 198
EAVWFK GA + L+Y G I + A+ A ++VL + D
Sbjct: 12 EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLD 71
Query: 199 KLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 258
L+PG FDPLGLA DP+ A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL HL
Sbjct: 72 PLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHL 131
Query: 259 SDPFANN 265
+DP ANN
Sbjct: 132 ADPVANN 138
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 97/189 (51%), Gaps = 34/189 (17%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +L G + GDYG+DP GL PD YQ EL++ARWAM+ AG + E
Sbjct: 37 PAHLDGSIAGDYGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAGIVGTEV-------A 89
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKLHPGG---------- 204
G E W++ G T +Y P + A+ ++ LE+K G
Sbjct: 90 GIEPRWWEAG-------TEDY---GFPPAALLAIQFPVMGYLENKRIQGWMATGSSGVNE 139
Query: 205 --PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
PFDP+G+ +KD + +K+KEIKNGR AM A +G +QA V EGPV L H+S+P
Sbjct: 140 TFPFDPMGMGSKDAN----MKLKEIKNGRAAMIAFVGIVVQAIVYREGPVAALKDHISNP 195
Query: 262 FANNLLTVI 270
F N+ T I
Sbjct: 196 FGCNMATNI 204
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 110 bits (274), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 102/214 (47%), Gaps = 39/214 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
PEYL GE+ GDYG+DP G +P EL+H RWAMLGAAG ++PE NK G
Sbjct: 40 PEYLKGELAGDYGFDPLGFGDEPRRLEWMVQAELVHCRWAMLGAAGILLPEIGNKTGMQS 99
Query: 155 GPEAV----WFKTGALLLDGN-------TLNYF-------GKNI---------------- 180
+ W++ G ++ + T F K +
Sbjct: 100 AAPGLAFPHWWEAGKVVAESGPWSMGSLTFTMFLLMGWAEHKRLYDFVKPGSQAVGWAWA 159
Query: 181 PINLVFAVIAEIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
P+ L E L ++ +PGG FDP ++K+ ++ K E+ NGRLAM AM GF
Sbjct: 160 PLGLGSITGVEEPLVAKENGYPGGIFDPFQMSKNEAKYKWYKQSEVTNGRLAMTAMFGFV 219
Query: 241 LQAYVT-GEGPVENLAKHLSDP----FANNLLTV 269
Q G+GP++NL H+S+P FA N ++V
Sbjct: 220 SQHIAYPGKGPIDNLVDHVSNPTKVTFATNGVSV 253
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/296 (33%), Positives = 136/296 (45%), Gaps = 71/296 (23%)
Query: 12 ASIGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEE 71
A + +++LG PL S + +S+ A + +A PPAK
Sbjct: 5 ALLSGRQLLGRPLQSSVSRSSSSRKAP---------FMVRAEATPPAKQ----------- 44
Query: 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY 126
G DR+++ + YL G +PGD+G+DP GLS P+ ++ AY
Sbjct: 45 -----GADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLS-DPEGTGGFIEPRWLAY 93
Query: 127 -ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINL 184
E+ + R AM+G G + PE K G A+ WF+TG + G T Y+ P L
Sbjct: 94 GEVFNGRTAMMGVVGMVAPELLGKLGLVPAETAIPWFQTGVIPPAG-TYTYWAD--PYTL 150
Query: 185 VFAVIA---------------------EIVLDLEDKL-------HPGGP-FDPLGLA-KD 214
+A + L LE L +PGGP F+PLG K
Sbjct: 151 FVFELALVGFAEHRRFQDWYTPGSMGKQYFLGLEKYLAGSGEPAYPGGPLFNPLGFGTKS 210
Query: 215 PDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
+ LK+KEIKNGRLAM A LGF +QA TG GPV+NL HL+DP NN+LT +
Sbjct: 211 EAEMKELKLKEIKNGRLAMLAFLGFSVQALFTGVGPVQNLLDHLADPVHNNILTSL 266
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 110/246 (44%), Gaps = 72/246 (29%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD-------------------- 118
DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 50 DRPLWFPG-----AQAPEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGE 104
Query: 119 -----------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCG 155
+++ ELIH RWAML G + E
Sbjct: 105 IIGTRFEDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTG------ 158
Query: 156 PEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHP 202
W G + L+DG++ Y G+ +P + + E++ LD E +L+P
Sbjct: 159 --VTWQDAGKVELVDGSS--YLGQPLPFTITTLIWIEVLVIGYIEFQRNAELDPERRLYP 214
Query: 203 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
GG FDPLGLA DP++ L++ EIK+ RLAM A LGF +QA TG+G + N A HLSDP
Sbjct: 215 GGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGRLNNWATHLSDP 274
Query: 262 FANNLL 267
+
Sbjct: 275 LHTTIF 280
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 107/236 (45%), Gaps = 67/236 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
P++L G + GDYG+DPFGL K +
Sbjct: 65 PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPF 124
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L+DG
Sbjct: 125 QPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDG 176
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGPF-DPLGLAKDPDQ 217
++ Y G+ +P ++ + E++ LD E +L+PGG F DPLGLA DP++
Sbjct: 177 SS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEK 234
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273
A L++ EIK+ RLAM A LGF +QA TG+GP A HLSDP ++ S +
Sbjct: 235 TAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPRNYWATHLSDPLHTTIIDTFSSS 290
>gi|159138449|gb|ABW89227.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Helianthus annuus]
Length = 116
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/71 (73%), Positives = 60/71 (84%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA DP FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 34 EVVDPLYPGGSFDPLGLADDPXAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 93
Query: 255 AKHLSDPFANN 265
A HL+DP ANN
Sbjct: 94 ADHLADPVANN 104
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 88/187 (47%), Gaps = 28/187 (14%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
+L G +PGDYG+DP LS P+ EL HARWAMLG AG + PE K G P
Sbjct: 48 HLDGSLPGDYGFDPLSLSADPEMRQWMVQAELQHARWAMLGVAGCVAPELLTKIGVADLP 107
Query: 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEI--VLDLE----------------- 197
V T G TL + I + AEI D++
Sbjct: 108 NWVDAATYQYWAPGGTLFF------IQMAMFNWAEIRRWQDMKNPGSVNTDPLFGYNSND 161
Query: 198 ---DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
D +P G FD G AKD A LK+KEIKNGRLAM A LG Q TG GPVENL
Sbjct: 162 TNTDVGYPKGLFDKFGWAKDEKTTAELKLKEIKNGRLAMLAFLGICAQYVQTGVGPVENL 221
Query: 255 AKHLSDP 261
H+ +P
Sbjct: 222 FSHMGNP 228
>gi|30694146|ref|NP_850705.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645784|gb|AEE79305.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 207
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 91/178 (51%), Gaps = 31/178 (17%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGY----- 109
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKLHPGGPFDPLGLAK 213
W K L G Y G +P + ++A + L +A
Sbjct: 110 ---GNWVKAQEWAALPGGQATYLGNPVPWGTLPTILA---------------IEFLAIAF 151
Query: 214 DPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 270
+ LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+ NN+ ++
Sbjct: 152 E------LKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 203
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 107/237 (45%), Gaps = 67/237 (28%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPD------------------------------------ 118
P+YL G + GDYG+DPFGL K +
Sbjct: 62 PDYLDGTLVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNEPGVVIGTRFESSDVKSTPL 121
Query: 119 -------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGAL-LLDG 170
+++ ELIH RWAML G + E W G + L+DG
Sbjct: 122 QPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTG--------VTWQDAGKVELVDG 173
Query: 171 NTLNYFGKNIPINLVFAVIAEIV------------LDLEDKLHPGGP-FDPLGLAKDPDQ 217
++ Y G+ +P ++ + E++ LD E +L+PGG FDPLGLA DP++
Sbjct: 174 SS--YLGQPLPFSISTLIWIEVLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLAADPEK 231
Query: 218 FALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNA 274
L++ EIK+ RLAM A LGF +QA TG+GP+ N A HLSDP + ++
Sbjct: 232 KERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTFGASS 288
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 102/196 (52%), Gaps = 32/196 (16%)
Query: 107 GYDPFGLSKKPDDFS----KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-W 160
G+DP GLS K+ AY E+I+ R+AMLGAAG I PE F K G A+ W
Sbjct: 1 GFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALPW 60
Query: 161 FKTGALLLDGNTLNYFGKNIPINLVFAVIA------------------EIVLDLE----- 197
F+TG + G+ + A++ + L LE
Sbjct: 61 FQTGVIPPAGSYTYWADPYTLFVFEMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGFAG 120
Query: 198 --DKLHPGGPF-DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
D +PGGPF +PLG KD LK+KEIKNGRLAM A+LG+F+Q VTG GP +NL
Sbjct: 121 SGDPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNL 180
Query: 255 AKHLSDPFANNLLTVI 270
HL+DP +NN+LT +
Sbjct: 181 LDHLADPVSNNVLTSL 196
>gi|157965821|gb|ABW06947.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 926
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/189 (39%), Positives = 100/189 (52%), Gaps = 42/189 (22%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE-AFNKFGAN 153
P +LTGE PGD G+DP GLSK P F++ + E+ H R AMLG G + E FNK
Sbjct: 18 PAHLTGEFPGDRGFDPLGLSKDPKVFARMRISEVFHGRLAMLGIVGCVGQEWLFNK---- 73
Query: 154 CGPEAVWFKTGALLLDGNTLNYFGKNIP-INLV-FAVIAEIVL------------DLEDK 199
WF +Y ++P + L+ VIA + D D+
Sbjct: 74 ----GAWF------------DYSDFDLPRLGLIALQVIAPLEYWRGNGGFSWNGNDGPDR 117
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
+PG FDPLGL + K++EIKNGRLAM AMLG +Q+++TG+ P+ NL HLS
Sbjct: 118 SYPG--FDPLGLTTEDT-----KLREIKNGRLAMSAMLGLEVQSHITGKSPLTNLGDHLS 170
Query: 260 DPFANNLLT 268
PF N+LT
Sbjct: 171 SPFTANILT 179
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +LTGE P D G+DP L+ P +++ + E+ HAR +ML G I+PE K
Sbjct: 390 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK----- 444
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL---------DLEDKLHPGGP 205
WF+ G +DG L + I + A E D+ +PG
Sbjct: 445 ---GAWFEVGN-SVDGIKLGF------ILMAIAAPTEYWRGNGGFNWDKGTADRSYPG-- 492
Query: 206 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
FDPL L D K EIKNGRLAM +LG Q TGE P+ NLA HL++P N
Sbjct: 493 FDPLKLTTD-----YTKAAEIKNGRLAMTGLLGLTFQYLATGESPLANLAAHLANPVGAN 547
Query: 266 LLTVIS 271
+ T ++
Sbjct: 548 ITTTLA 553
Score = 97.4 bits (241), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/186 (35%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P +LTGE P D G+DP L+ P +++ + E+ HAR +ML G I+PE K
Sbjct: 763 PAHLTGEYPADRGFDPLSLAADPTVYARMRVSEVFHARLSMLAIVGSILPELLGK----- 817
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLD---------LEDKLHPGGP 205
WF+ G + DG L + I + A E D+ +PG
Sbjct: 818 ---GAWFEVGNSV-DGIKLGF------ILMAIAAPTEYWRGNGGFNWDKGTADRSYPG-- 865
Query: 206 FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 265
FDPL L D K EIKNGRLAM +LG Q TGE P+ NLA HL++P N
Sbjct: 866 FDPLKLTTD-----YTKAAEIKNGRLAMTGLLGLTFQYLATGESPLANLAAHLANPVGAN 920
Query: 266 LLTVIS 271
+ T ++
Sbjct: 921 ITTTLA 926
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 89/189 (47%), Gaps = 46/189 (24%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTGE P D G+DP GL+ P + + + E+ + R AML G + PE
Sbjct: 573 PAYLTGEFPADRGFDPAGLAADPKVYERMRVAEVFNGRLAMLAIVGCVYPELLGN----- 627
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-EIVLDLE---------------- 197
VWF+ N ++++ FA+I+ ++V LE
Sbjct: 628 ---GVWFEVW------NKVDFY--------RFALISLQVVAPLEYWRGNGGFGWDGEEKY 670
Query: 198 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
D+ +PG FDP L + K EIKNGRLAM M G +Q +VT +GPV NL +H
Sbjct: 671 DRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQNHVTAQGPVANLIEH 723
Query: 258 LSDPFANNL 266
L P A N+
Sbjct: 724 LRHPLAANI 732
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 90/198 (45%), Gaps = 41/198 (20%)
Query: 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGA 138
DR ++ P G P YLTG+ GD G+DP GL+ P F + + E+ H R AML
Sbjct: 194 DRPLWFPGGY-----APSYLTGQYFGDRGFDPAGLAADPKVFERMRVSEVYHGRLAMLAI 248
Query: 139 AGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIA-----EIV 193
G ++P+ K W++ I +N V A E+
Sbjct: 249 VGAVVPDILGK--------GAWYEAAQ-----------NAGIGVNEVAVFTAAYGVVEVA 289
Query: 194 LDLE-----DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
L+ K +PG FDPL L D K EIKNGRLA+ MLG +Q +VTG
Sbjct: 290 RGLKANSDPTKNYPG--FDPLKLTTD-----YTKEAEIKNGRLALTGMLGLEVQRHVTGV 342
Query: 249 GPVENLAKHLSDPFANNL 266
P+ NL +H+ P +N+
Sbjct: 343 SPLVNLVEHVKHPLNHNI 360
>gi|222424528|dbj|BAH20219.1| AT3G54890 [Arabidopsis thaliana]
Length = 159
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 88/163 (53%), Gaps = 23/163 (14%)
Query: 123 YQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALL-LDGNTLNYFGKNIP 181
Y+ ELIH RWAML G ++PEA +G W K L G Y G +P
Sbjct: 1 YKESELIHCRWAMLAVPGILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVP 52
Query: 182 INLVFAVIAEIVL-------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKN 228
+ ++A L D E K +PGG FDPLG +KDP + LKVKEIKN
Sbjct: 53 WGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKN 112
Query: 229 GRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPFANNLLTVI 270
GRLA+ A +GF + Q+ G GP+ENLA HL+DP+ NN+ ++
Sbjct: 113 GRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIV 155
>gi|115822|sp|P10707.1|CB2D_SOLLC RecName: Full=Chlorophyll a-b binding protein 1D; AltName:
Full=LHCII type I CAB-1D; Short=LHCP
gi|170428|gb|AAA34158.1| chlorophyll a/b-binding protein Cab-1D, partial [Solanum
lycopersicum]
gi|224929|prf||1204205D protein 1D,chlorophyll binding
Length = 116
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 34 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 93
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 94 ADHLADPVNNN 104
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/208 (37%), Positives = 102/208 (49%), Gaps = 39/208 (18%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKY------QAYELIHARWAMLGAAGFIIPEAFNKF 150
YLTG +P DYG+DP GL + + Q E+IHARWAMLGAAG I PE
Sbjct: 35 YLTGALPADYGFDPLGLLDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEILATA 94
Query: 151 GA--NCGPEAVWFKTGAL---------LLDGNTLNYFGKNIPINLV-------------- 185
G E +WFK+G + LD +L +F + I +
Sbjct: 95 GVIPQTPDEVIWFKSGVIPPAGVYDKYWLDPYSL-FFIEVILVQFAELRRWQDFRNPGSQ 153
Query: 186 ----FAVIAEIVLDLEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
F + E++ D +PGG F+ L K LK KE+KNGRLAM A+ G+
Sbjct: 154 GKQYFLGLEEVLKGSGDPSYPGGQFFNLFNLGK--SDLKELKTKELKNGRLAMLAVFGYG 211
Query: 241 LQAYVTGEGPVENLAKHLSDPFANNLLT 268
QA +T EGP +NL HLSDP +N+LT
Sbjct: 212 AQAVITAEGPFKNLTDHLSDPTGHNILT 239
>gi|412991092|emb|CCO15937.1| putative lycopene beta cyclase [Bathycoccus prasinos]
Length = 1593
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 112/207 (54%), Gaps = 29/207 (14%)
Query: 73 AKWYGPDRRIFLPEGLL----DRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYEL 128
A YG DR FLP+ ++ + +P +LTG +PGD G+DP + D K++ EL
Sbjct: 1387 ADLYGNDRIKFLPKSIINLPGENVIVPPHLTGGLPGDIGFDPLKFGAQ-SDLLKFREREL 1445
Query: 129 IHARWAMLGAAGFIIPEAFNKFGA-NCGPEAVWFKTGAL--LLDGNTLNYFGKNIP---- 181
I+ RWAML A G ++PE KFG G + W+ T + + DG L Y G IP
Sbjct: 1446 INGRWAMLAAIGVLLPEFLFKFGLYGEGTDQHWWSTKIIHDVADGWQLTYMGSEIPWGLF 1505
Query: 182 ----INLVFAVIAEIV----LDLE-----DKLHPGGP-FDPLGLA--KDPDQFALLKVKE 225
I+L +AE++ ++E DKL+PGG FDPLGLA + ++ +LK E
Sbjct: 1506 WLPIIHLPLMFVAEMLRTGKFEIERFSTLDKLYPGGRLFDPLGLAANQSEEEVRILKAIE 1565
Query: 226 IKNGRLAMFAMLGFFLQAYVTGEGPVE 252
I++ RLAM A F Q TG+GP++
Sbjct: 1566 IQHCRLAMLAFSIFCFQG-ATGKGPLD 1591
>gi|170409|gb|AAA34150.1| chlorophyll a/b-binding protein Cab-1A, partial [Solanum
lycopersicum]
gi|170414|gb|AAA34152.1| chlorophyll a/b-binding protein Cab-1C, partial [Solanum
lycopersicum]
Length = 116
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 61/71 (85%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA+DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 34 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 93
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 94 ADHLADPVNNN 104
>gi|168812218|gb|ACA30285.1| putative chlorophyll A-B binding protein type I [Cupressus
sempervirens]
Length = 134
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 78/126 (61%), Gaps = 18/126 (14%)
Query: 158 AVWFKTGALLLDGNTLNYFGK--NIPINLVFAVIA-EIVL---------------DLEDK 199
AVWFK G+ + L+Y G I + A+ A ++VL + D
Sbjct: 1 AVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDP 60
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAM +M GFF+QA VTG+GP+ENL HL+
Sbjct: 61 LYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMSSMFGFFVQAIVTGKGPIENLYDHLA 120
Query: 260 DPFANN 265
DP NN
Sbjct: 121 DPSTNN 126
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 93/193 (48%), Gaps = 34/193 (17%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P++L G + GDYG+DP GL + YQ EL+HARWAMLG AG PE +
Sbjct: 52 PKHLDGTMAGDYGFDPLGLGEDKVALQWYQQAELVHARWAMLGVAGMAAPELVGNPFVD- 110
Query: 155 GPEAVWFKT---GALLLDGNTLNYFGKNIPINLVFAVIAEIVLDLEDKLHP--------- 202
GP W + + D NTL + + F AE V +D +P
Sbjct: 111 GPLPNWAEAPFFDGYIADANTL------FVVQMFFMNWAE-VRRWQDMKNPGSVHADPYD 163
Query: 203 --------------GGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGE 248
GG F+P+G+AK L+ KEI NGRLAM A +G F+Q VTG
Sbjct: 164 ENRKCTGSDVGYPGGGLFNPMGMAKSVADEKALRAKEIANGRLAMVAAMGCFIQHDVTGT 223
Query: 249 GPVENLAKHLSDP 261
GPV NL H++DP
Sbjct: 224 GPVANLKAHIADP 236
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 95/196 (48%), Gaps = 34/196 (17%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
+L G +PGD+GYDP GLS P EL +ARWAMLG AG + + NK G P
Sbjct: 51 WLDGSLPGDFGYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGL---P 107
Query: 157 EAVWFKTGALL---LDGNTLNYFGKNIPINLVFAVIAE--------------------IV 193
AV + L+ D TL + + LV E +
Sbjct: 108 AAVQWYEAPLVDYQADWKTL------LVVQLVLHAWVEGRRWADFHSPGSANADPFGNSL 161
Query: 194 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 253
+PGGPFDPLG +K LK+KEIKNGRLAM A LG F+Q TG P++N
Sbjct: 162 PSTATTGYPGGPFDPLGFSKG--NLPELKLKEIKNGRLAMVASLGLFVQYSATGASPLDN 219
Query: 254 LAKHLSDPFANNLLTV 269
LA HL+DP N+ +
Sbjct: 220 LAAHLADPGHANIFAL 235
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 109/223 (48%), Gaps = 49/223 (21%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFS-------KYQAY-ELIHARWAMLGAAGFIIPEAFN 148
YLTG +PGD+G+DP L+ D ++ +Y E+IH RWAMLGAAG + PE
Sbjct: 128 YLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALSPEVLG 187
Query: 149 KFGANCGPEAV-WFKTGALLLDGNTLNY-FGKNIPIN-------LVFAVIA--------- 190
K G + WF+ G L N + F IP L+F ++
Sbjct: 188 KAGVIPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTDQYTLLFTMLVAMGFAETRR 247
Query: 191 ------------EIVLDLEDKLHP---------GGPFDPLGL-AKDPDQFALLKVKEIKN 228
+ L LE KL P GG F+ GL AKD Q LKVKEI+N
Sbjct: 248 WQEYKEPGSVQKQFFLGLE-KLTPPSQQPAYPGGGFFNFAGLGAKDEKQMFELKVKEIRN 306
Query: 229 GRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271
GRLAM A LGF +QA VT GP +NL H++ P A NLL+ ++
Sbjct: 307 GRLAMLAFLGFMVQAEVTHVGPFQNLLDHINSPGAQNLLSRLT 349
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 95/196 (48%), Gaps = 34/196 (17%)
Query: 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156
+L G +PGD+GYDP GLS P EL +ARWAMLG AG + + NK G P
Sbjct: 47 WLDGSLPGDFGYDPLGLSSDPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGL---P 103
Query: 157 EAVWFKTGALL---LDGNTLNYFGKNIPINLVFAVIAE--------------------IV 193
AV + L+ D TL + + LV E +
Sbjct: 104 AAVQWYEAPLVDYQADWKTL------LVVQLVLHAWVEGRRWADFHSPGSANADPFGNSL 157
Query: 194 LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 253
+PGGPFDPLG +K LK+KEIKNGRLAM A LG F+Q TG P++N
Sbjct: 158 PSTATTGYPGGPFDPLGFSKG--NLPELKLKEIKNGRLAMVASLGLFVQYSATGASPLDN 215
Query: 254 LAKHLSDPFANNLLTV 269
LA HL+DP N+ +
Sbjct: 216 LAAHLADPGHANIFAL 231
>gi|305377032|dbj|BAJ15879.1| chlorophyll a/b binding protein-like protein [Torenia fournieri]
Length = 129
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 60/71 (84%)
Query: 195 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENL 254
++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL
Sbjct: 47 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 106
Query: 255 AKHLSDPFANN 265
A HL+DP NN
Sbjct: 107 ADHLADPVNNN 117
>gi|115769|sp|P12327.1|CB21_EUGGR RecName: Full=Chlorophyll a-b binding protein of LHCII type 1;
AltName: Full=Chlorophyll a-b binding protein of LHCII
type I; Short=CAB; Short=LHCP
gi|829262|emb|CAA29821.1| chlorophyll a/b protein (128 AA) [Euglena gracilis]
Length = 127
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Query: 198 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKH 257
D+L+PGGPFDPLGLA DPD F LKVKEIKNGRLAM MLGF+ QA VTGEGPVEN H
Sbjct: 43 DRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYH 102
Query: 258 LSDPFANNLLTVISGNAERAPT 279
L DP A+N LT + + APT
Sbjct: 103 LQDPSAHNGLTALV--TQFAPT 122
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,111,503,353
Number of Sequences: 23463169
Number of extensions: 242345015
Number of successful extensions: 565309
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1538
Number of HSP's successfully gapped in prelim test: 318
Number of HSP's that attempted gapping in prelim test: 557541
Number of HSP's gapped (non-prelim): 3745
length of query: 280
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 140
effective length of database: 9,074,351,707
effective search space: 1270409238980
effective search space used: 1270409238980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)