BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023586
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 73 MLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 132 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 191
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 192 FGFFVQAIVTGKGPLENLADHLADPVNNN 220
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 131/209 (62%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ FSK + E+IH+RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE ++ G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 73 MLGALGSVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQ 131
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M
Sbjct: 132 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSM 191
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 192 FGFFVQAIVTGKGPLENLADHLADPVNNN 220
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 129/209 (61%), Gaps = 22/209 (10%)
Query: 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWA 134
WYGPDR +L E P YLTGE PGDYG+D GLS P+ F+K + E+IH RWA
Sbjct: 16 WYGPDRVKYLGP---FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWA 72
Query: 135 MLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIAEI 192
MLGA G + PE + G G EAVWFK G+ + L+Y G + + A+ A
Sbjct: 73 MLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQ 131
Query: 193 VL----------------DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAM 236
V+ ++ D L+PGG FDPLGLA DP+ FA LKVKEIKNGRLAMF+M
Sbjct: 132 VILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSM 191
Query: 237 LGFFLQAYVTGEGPVENLAKHLSDPFANN 265
GFF+QA VTG+GP+ENLA HL+DP NN
Sbjct: 192 FGFFVQAIVTGKGPLENLADHLADPVNNN 220
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 140 bits (354), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 110/205 (53%), Gaps = 23/205 (11%)
Query: 81 RIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAG 140
RI + + P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G
Sbjct: 41 RIRMAAHWMPGEPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPG 100
Query: 141 FIIPEAFNKFGANCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA--------- 190
++PEA +G W K L G Y G +P + ++A
Sbjct: 101 ILVPEALG-YGN-------WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFV 152
Query: 191 ----EIVLDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYV 245
+ D E K +PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+
Sbjct: 153 EHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAY 212
Query: 246 TGEGPVENLAKHLSDPFANNLLTVI 270
G GP+ENLA HL+DP+ NN+ ++
Sbjct: 213 PGTGPLENLATHLADPWHNNIGDIV 237
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/187 (42%), Positives = 104/187 (55%), Gaps = 23/187 (12%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YL G PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G
Sbjct: 7 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-- 63
Query: 155 GPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIA-------------EIVLDLEDKL 200
W K L G Y G +P + ++A + D E K
Sbjct: 64 -----WVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKK 118
Query: 201 HPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLS 259
+PGG FDPLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+
Sbjct: 119 YPGGAFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 178
Query: 260 DPFANNL 266
DP+ NN+
Sbjct: 179 DPWHNNI 185
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 73/176 (41%), Positives = 97/176 (55%), Gaps = 23/176 (13%)
Query: 102 VPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWF 161
PGD+G+DP GL + P + +Y+ ELIH RWAML G ++PEA +G W
Sbjct: 2 APGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALG-YGN-------WV 53
Query: 162 KTGALL-LDGNTLNYFGKNIPINLVFAVIA-------------EIVLDLEDKLHPGGPFD 207
K L G Y G +P + ++A + D E K +PGG FD
Sbjct: 54 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFD 113
Query: 208 PLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFL-QAYVTGEGPVENLAKHLSDPF 262
PLG +KDP + LKVKEIKNGRLA+ A +GF + Q+ G GP+ENLA HL+DP+
Sbjct: 114 PLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPW 169
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 124 bits (312), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 113/210 (53%), Gaps = 38/210 (18%)
Query: 96 EYLTGEVPGDYGYDPFGLSKKPDDFS-----KYQAY-ELIHARWAMLGAAGFIIPEAFNK 149
YL G +PGDYG+DP GLS P+ K+ AY E+I+ R+AMLGA G I PE K
Sbjct: 67 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 150 FGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVFAVI------------------- 189
G A+ WF+TG + T NY+ + + VF +
Sbjct: 126 AGLIPQETALPWFRTG-FIPPAGTYNYWADSYTL-FVFEMALMGFAEHRRFQDWAKPGSM 183
Query: 190 -AEIVLDLEDKL-------HPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFF 240
+ L LE L +PGGP F+PLG KD LK+KE+KNGRLAM A+LG+F
Sbjct: 184 GKQYFLGLEKGLGGSGEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYF 243
Query: 241 LQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
+QA VTG GP +NL HL+DP NN+LT +
Sbjct: 244 VQALVTGVGPYQNLLDHLTDPVHNNILTSL 273
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 114/248 (45%), Gaps = 71/248 (28%)
Query: 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------- 118
+ DR ++ P ++ PEYL G + GDYG+DPFGL K +
Sbjct: 7 FSTDRPLWYP-----GAKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNL 61
Query: 119 --------------------------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152
+++ ELIH RWAML G + E
Sbjct: 62 AGDIIGTRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGI-- 119
Query: 153 NCGPEAVWFKTGAL-LLDGNTLNYFGKNIPINLVFAVIAEIV------------LDLEDK 199
W G + L++G++ Y G+ +P ++ + E++ LD E +
Sbjct: 120 ------TWQDAGKVELIEGSS--YLGQPLPFSMTTLIWIEVLVIGYIEFQRNAELDTEKR 171
Query: 200 LHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
L+PGG FDPLGLA DP++ +L++ EIK+ RLAM LGF +QA VTG+GP+ N HLS
Sbjct: 172 LYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHLS 231
Query: 260 DPFANNLL 267
DP +L
Sbjct: 232 DPLHTTIL 239
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/211 (38%), Positives = 103/211 (48%), Gaps = 35/211 (16%)
Query: 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLG 137
PDR ++ P S P +L G +PGD+G+DP GL P+ EL+H+RWAMLG
Sbjct: 62 PDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLG 116
Query: 138 AAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE------ 191
AAG IPE K G P W+ G +T F + LVF AE
Sbjct: 117 AAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF----IVELVFIGWAEGRRWAD 170
Query: 192 ---------------IVLDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMF 234
L D +PGG FDPLG + P + L+ KEIKNGRLAM
Sbjct: 171 ILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAML 230
Query: 235 AMLGFFLQAYVTGEGPVENL-AKHLSDPFAN 264
A++G + Q TG GP++NL A HL+DP A
Sbjct: 231 AVMGAWFQHIYTGTGPIDNLFAAHLADPHAT 261
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 96/190 (50%), Gaps = 29/190 (15%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
PE+L G +PGD+G+DP GLS P+ EL+H+RWAMLGAAG IPE K G
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAE---------------------IV 193
P W+ G +T F + LVF AE
Sbjct: 61 TPS--WYTAGEQEYFTDTTTLF----IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNK 114
Query: 194 LDLEDKLHPGG-PFDPLGL-AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251
L D +PGG FDPLG + P + L+ KEIKNGRLAM A++G + Q TG GP+
Sbjct: 115 LTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 174
Query: 252 ENLAKHLSDP 261
+NL HL+DP
Sbjct: 175 DNLFAHLADP 184
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 103/203 (50%), Gaps = 38/203 (18%)
Query: 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154
P YLTG +PGD G+DP GL++ P++ + EL++ RWAMLG AG ++PE F G
Sbjct: 63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122
Query: 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIV--------------------- 193
P+ W+ G YF + + ++ +++ V
Sbjct: 123 VPK--WYAAG-------KEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFK 173
Query: 194 ---LDLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250
L + +PGG F+PL A + K KEI NGRL M A LGF +Q VTG+GP
Sbjct: 174 QYSLPAGEVGYPGGIFNPLNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGP 228
Query: 251 VENLAKHLSDPFANNLLTVISGN 273
+NL +H+SDP+ N ++ + GN
Sbjct: 229 FDNLLQHISDPWHNTIVQTLGGN 251
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/161 (39%), Positives = 84/161 (52%), Gaps = 29/161 (18%)
Query: 127 ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLV 185
E+I+ R+AMLGAAG I PE K G A+ WF+TG + G T Y+ N + ++
Sbjct: 6 EIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAG-TYTYWADNYTLFVL 64
Query: 186 FAVI-------------------AEIVLDLEDKL-------HPGGP-FDPLGLAKDPDQF 218
+ + L LE L +PGGP F+PLG KD
Sbjct: 65 EMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSL 124
Query: 219 ALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLS 259
LK+KE+KNGRLAM A+LG+F+Q VTG GP +NL HL+
Sbjct: 125 KELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLA 165
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 79/168 (47%), Gaps = 29/168 (17%)
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 176
P+ EL+H+RWAMLGAAG IPE K G P W+ G +T F
Sbjct: 3 PESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPS--WYTAGEQEYFTDTTTLF 60
Query: 177 GKNIPINLVFAVIAE---------------------IVLDLEDKLHPGG-PFDPLGL-AK 213
+ LVF AE L D +PGG FDPLG +
Sbjct: 61 ----IVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSA 116
Query: 214 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDP 261
P + L+ KEIKNGRLAM A++G + Q TG GP++NL HL+DP
Sbjct: 117 SPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 164
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 85/178 (47%), Gaps = 37/178 (20%)
Query: 117 PDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYF 176
P++ + EL++ RWAMLG AG ++PE F G P+ W+ G YF
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------KEEYF 51
Query: 177 GKNIPINLVFAVIAEIV------------------------LDLEDKLHPGGPFDPLGLA 212
+ + ++ +++ V L + +PGG F+PL A
Sbjct: 52 ASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFA 111
Query: 213 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVI 270
+ K KEI NGRLAM A LGF +Q VTG+GP +NL +H+SDP+ N ++ +
Sbjct: 112 PTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTL 165
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 83/161 (51%), Gaps = 30/161 (18%)
Query: 122 KYQAY-ELIHARWAMLGAAGFIIPEAFNKFGANCGPEAV-WFKTGALLLDGNTLNYFGKN 179
++ AY E+I+ R+AMLGA G I PE K G A+ WF+TG + G T NY+ N
Sbjct: 13 RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAG-TYNYWADN 71
Query: 180 IPINLVFAVI-------------------AEIVLDLEDKL-------HPGGPF-DPLGLA 212
+ ++ + + L LE +PGGPF +PLG
Sbjct: 72 YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFG 131
Query: 213 KDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN 253
KD LK+KE+KNGRLAM A+LG+F+Q VTG GP +N
Sbjct: 132 KDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQN 172
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 86/179 (48%), Gaps = 38/179 (21%)
Query: 113 LSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNT 172
L++ P++ + EL++ RWAMLG AG ++PE F G P+ W+ G
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK--WYAAG-------K 51
Query: 173 LNYFGKNIPINLVFAVIAEIV------------------------LDLEDKLHPGGPFDP 208
YF + + ++ +++ V L + +PGG F+P
Sbjct: 52 EEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNP 111
Query: 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 267
L A + K KEI NGRL M A LGF +Q VTG+GP +NL +H+SDP+ N ++
Sbjct: 112 LNFAPTLEA----KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIV 165
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 147 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK-KAY-------SFCGTVEYMAPEV 198
Query: 147 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 192
N+ G A W+ G L+ + TL + GK+ + + A++
Sbjct: 199 VNRRGHT--QSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKL 244
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 146 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK-KAY-------SFCGTVEYMAPEV 197
Query: 147 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 192
N+ G A W+ G L+ + TL + GK+ + + A++
Sbjct: 198 VNRRGHT--QSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKL 243
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 146 GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK-KAY-------SFCGTVEYMAPEV 197
Query: 147 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 192
N+ G A W+ G L+ + TL + GK+ + + A++
Sbjct: 198 VNRRGHTQS--ADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKL 243
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 87 GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146
G++ R PE + + G FGLSK+ D K +AY + G ++ PE
Sbjct: 150 GIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEK-KAY-------SFCGTVEYMAPEV 201
Query: 147 FNKFGANCGPEAVWFKTGALLLD--GNTLNYFGKNIPINLVFAVIAEI 192
N+ G + A W+ G L+ + +L + GK+ + + A++
Sbjct: 202 VNRQGHSHS--ADWWSYGVLMFEMLTGSLPFQGKDRKETMTLILKAKL 247
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 163 TGALLLDGNTLNYFGKNIPINLVFAVIAEIVLD 195
T LL G T++YF ++I N+++A+ A++ D
Sbjct: 213 TNVLLDSGTTISYFTRSIVRNILYAIGAQMKFD 245
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 107 GYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE-AVWFKTGA 165
G P G +K FS +AY+++ A A +G + F++ N+F N V F+
Sbjct: 13 GLVPRGSAK---SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKT 69
Query: 166 LLLDG 170
L++DG
Sbjct: 70 LIVDG 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,795,383
Number of Sequences: 62578
Number of extensions: 389498
Number of successful extensions: 681
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 34
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)