Query 023586
Match_columns 280
No_of_seqs 256 out of 1213
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023586.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023586hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00187 photosystem II light- 100.0 5.2E-62 1.1E-66 451.6 16.8 224 15-271 6-285 (286)
2 PLN00025 photosystem II light 100.0 1.2E-60 2.6E-65 438.4 16.9 196 72-271 43-256 (262)
3 PLN00171 photosystem light-ha 100.0 1.1E-60 2.3E-65 447.8 11.7 201 68-271 96-323 (324)
4 PLN00098 light-harvesting comp 100.0 1.8E-58 3.8E-63 425.1 17.9 188 71-272 53-266 (267)
5 PLN00101 Photosystem I light-h 100.0 5.8E-58 1.2E-62 418.3 15.9 181 73-271 46-250 (250)
6 PLN00097 photosystem I light h 100.0 9.4E-57 2E-61 408.9 15.1 178 77-267 41-243 (244)
7 PLN00048 photosystem I light h 100.0 7.4E-57 1.6E-61 413.8 14.5 193 74-272 36-261 (262)
8 PLN00147 light-harvesting comp 100.0 5.8E-56 1.3E-60 405.8 16.0 189 75-273 40-252 (252)
9 PLN00099 light-harvesting comp 100.0 5.6E-56 1.2E-60 404.2 14.5 182 78-272 42-238 (243)
10 PLN00100 light-harvesting comp 100.0 3.9E-53 8.5E-58 385.1 13.8 179 77-278 32-216 (246)
11 PLN00170 photosystem II light- 100.0 4.9E-46 1.1E-50 340.3 13.3 168 78-255 49-254 (255)
12 PF00504 Chloroa_b-bind: Chlor 100.0 1.2E-39 2.6E-44 277.6 12.8 142 94-244 1-156 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 1.8E-38 3.8E-43 284.3 13.9 151 93-252 45-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 9.9E-32 2.1E-36 239.7 11.9 142 108-252 47-199 (202)
15 PLN00098 light-harvesting comp 99.6 2.8E-15 6E-20 139.0 5.7 70 198-267 76-153 (267)
16 PLN00101 Photosystem I light-h 99.5 6.3E-15 1.4E-19 135.5 5.9 54 198-251 67-121 (250)
17 PLN00147 light-harvesting comp 99.5 1.8E-14 4E-19 132.6 4.9 57 95-151 172-228 (252)
18 PLN00048 photosystem I light h 99.4 4.9E-14 1.1E-18 130.5 3.9 53 99-151 186-238 (262)
19 PLN00089 fucoxanthin-chlorophy 99.4 1.4E-13 3E-18 123.9 4.8 53 100-152 153-206 (209)
20 PLN00170 photosystem II light- 99.4 1.9E-13 4.2E-18 125.9 5.7 52 198-249 71-123 (255)
21 PLN00097 photosystem I light h 99.4 2E-13 4.3E-18 125.2 5.6 53 198-250 58-111 (244)
22 PLN00171 photosystem light-ha 99.4 2E-13 4.4E-18 129.2 5.4 53 198-250 124-177 (324)
23 PLN00187 photosystem II light- 99.4 1.6E-13 3.4E-18 128.3 4.3 53 99-151 211-263 (286)
24 PLN00025 photosystem II light 99.4 3.4E-13 7.4E-18 124.8 5.6 52 198-249 67-119 (262)
25 PLN00100 light-harvesting comp 99.4 5.6E-13 1.2E-17 122.3 5.3 50 198-247 49-99 (246)
26 PLN00099 light-harvesting comp 99.3 1.3E-12 2.7E-17 120.0 4.7 50 198-247 58-108 (243)
27 PF00504 Chloroa_b-bind: Chlor 99.3 1.7E-12 3.6E-17 110.7 4.2 50 97-146 107-156 (156)
28 PLN00120 fucoxanthin-chlorophy 99.0 1.4E-10 3E-15 104.0 4.1 46 100-149 142-194 (202)
29 PHA02337 putative high light i 98.1 2.2E-06 4.7E-11 56.7 3.3 28 223-250 4-31 (35)
30 PLN00084 photosystem II subuni 97.9 9.9E-06 2.2E-10 71.1 3.5 46 216-261 130-176 (214)
31 PLN00014 light-harvesting-like 97.5 8.8E-05 1.9E-09 67.9 3.2 36 221-256 159-194 (250)
32 PHA02337 putative high light i 97.4 0.00011 2.4E-09 48.7 2.2 29 124-152 3-31 (35)
33 PLN00014 light-harvesting-like 95.7 0.0048 1E-07 56.7 1.3 29 123-151 159-187 (250)
34 PLN00084 photosystem II subuni 93.1 0.043 9.4E-07 48.6 1.4 35 118-152 130-165 (214)
35 PLN02449 ferrochelatase 44.3 16 0.00035 37.3 2.4 21 231-251 463-483 (485)
36 PF12621 DUF3779: Phosphate me 22.5 38 0.00081 26.8 0.7 16 109-134 53-68 (95)
37 PHA00649 hypothetical protein 20.1 96 0.0021 23.9 2.4 30 116-146 32-68 (83)
No 1
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=5.2e-62 Score=451.59 Aligned_cols=224 Identities=38% Similarity=0.691 Sum_probs=178.8
Q ss_pred cchhhcCCccccccccccCCCCCCCCCCCcceEeeccCCCCCCCCCCCCcCCCchhhhhhhcCCCCccccccCccCCCCC
Q 023586 15 GAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFSKKKAAPPAKSKPVAVSPVNEELAKWYGPDRRIFLPEGLLDRSEI 94 (280)
Q Consensus 15 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~f~~~~~a~~~~~~~~~~~~~~~~~~~~~g~~r~~~lp~g~~~~~~~ 94 (280)
..|.|+|.++.. +.++..+++++|+.++...++ +++ .+...||+++|++|||+ .+.
T Consensus 6 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~r~~w~p~-----~~~ 61 (286)
T PLN00187 6 AASSFMGTRVPD-----------VASNSGRIVARFGFGKKKKAA-KKA-------KKKSSKVGADRPLWFPG-----AKA 61 (286)
T ss_pred cchhhhhhhhcc-----------cccCccchhhhhccCcccccC-Ccc-------ccCccCCCCCccccCCC-----CCC
Confidence 346688877742 134677788888753321111 111 01346789999999997 799
Q ss_pred CCCCCCCCCCCCCcccCCCCCChhh-------------------------------------------HHHHHHHHHhhh
Q 023586 95 PEYLTGEVPGDYGYDPFGLSKKPDD-------------------------------------------FSKYQAYELIHA 131 (280)
Q Consensus 95 P~~L~G~~pGd~GFDPLGLs~~p~~-------------------------------------------l~~~ReaELkHG 131 (280)
|+||||++|||||||||||+++|+. ++||||+|||||
T Consensus 62 P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~l~r~REaELiHG 141 (286)
T PLN00187 62 PEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQPYSEVFGLQRFRECELIHG 141 (286)
T ss_pred cccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccCcchhhhHHHHHHHHHhhhh
Confidence 9999999999999999999998885 699999999999
Q ss_pred hhhhhhhhhhhhhhhhhcCCCCCCCcchhhhccccccCCccccccCchhHH--------HHHHHHHHHHhh----ccccC
Q 023586 132 RWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI--------NLVFAVIAEIVL----DLEDK 199 (280)
Q Consensus 132 R~AMLA~vG~lv~E~l~~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~pi--------~l~~~~~~E~~~----~~~d~ 199 (280)
||||||++||++||+++. ..|+++|...+..+ ..|++.+.++ ++++++++|... +..+.
T Consensus 142 RwAMLAvaG~lvpEll~G--------~~W~~aG~~~~~~g-~~y~g~~~p~~~~~l~~iqvllmG~~E~~R~~~~~~~~~ 212 (286)
T PLN00187 142 RWAMLATLGALSVEALTG--------VTWQDAGKVELVDG-SSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAELDPEKR 212 (286)
T ss_pred HHHHHHhhchhhHHhccC--------Cccccccccccccc-ccccccccchhHHHHHHHHHHHHHHHHhhhccCCCCCCC
Confidence 999999999999999842 35999987554322 3577755432 344455667653 22356
Q ss_pred CCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhcc
Q 023586 200 LHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271 (280)
Q Consensus 200 ~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~ 271 (280)
.||||. ||||||.+|+++++++|++|||||||||+|++||++|+.+||+||++||.+|++||+||||++++.
T Consensus 213 ~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL~~Hladp~~~n~~~~~~ 285 (286)
T PLN00187 213 LYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTFS 285 (286)
T ss_pred CCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccccHHHhcc
Confidence 799996 999999999999999999999999999999999999999999999999999999999999999875
No 2
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=1.2e-60 Score=438.40 Aligned_cols=196 Identities=55% Similarity=0.942 Sum_probs=170.3
Q ss_pred hhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCC
Q 023586 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (280)
Q Consensus 72 ~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (280)
.+.|||+||++|| |+++ .+.|+||||++|||||||||||++++++++||||+|||||||||||++|+++||+++..|
T Consensus 43 ~~~~~g~~R~~~l--~p~~-~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 43 GSIWYGPDRPKYL--GPFS-GETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cccccCCCCcccc--CCcc-cCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 5679999999999 4454 588999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCcchhhhccccccCCccccccCchhHH-----------HHHHHHHHHHhhc-------cccCCCCCCCCCCCCCCC
Q 023586 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-----------NLVFAVIAEIVLD-------LEDKLHPGGPFDPLGLAK 213 (280)
Q Consensus 152 ~~~~p~~~W~~aG~~~~~~~~l~~~g~~~pi-----------~l~~~~~~E~~~~-------~~d~~~PGg~FDPlgl~~ 213 (280)
..+ .+..|+++|..++..++++|++.+..+ +++++.++|.+.. ..|++||||+||||||.+
T Consensus 120 ~~~-~~~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~~~~~~~~d~~yPG~~FDPlGl~~ 198 (262)
T PLN00025 120 VKF-GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLAD 198 (262)
T ss_pred cCc-CcccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccCCcccccccCcCCcccCCccccCC
Confidence 543 356899999877776778898865221 3344556776521 125689999999999999
Q ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhcc
Q 023586 214 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271 (280)
Q Consensus 214 dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~ 271 (280)
|+++++++|+||||||||||+|++||++|+++||+||++||.+|++||+|||++++..
T Consensus 199 d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~~hladP~~~n~~~~~~ 256 (262)
T PLN00025 199 DPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVANNAWAYAT 256 (262)
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHHHHhcCccccchhhhhh
Confidence 9999999999999999999999999999999999999999999999999999998753
No 3
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=1.1e-60 Score=447.77 Aligned_cols=201 Identities=50% Similarity=0.874 Sum_probs=169.7
Q ss_pred chhhhhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q 023586 68 VNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 147 (280)
Q Consensus 68 ~~~~~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l 147 (280)
.+.+.+.|||++|++|||+ +. .++|+||||++|||||||||||++|+++++||||+|||||||||||++|+++||++
T Consensus 96 ~~~~~~~~~g~~R~~wl~~--~~-~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l 172 (324)
T PLN00171 96 KARNESFWYGEERPRWLGP--IP-YDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVL 172 (324)
T ss_pred hhcccCcccCCCCccccCC--CC-CCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHh
Confidence 4667889999999999964 32 37999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcchhhhccccccCCccccccCchhH----HH-HHHHHHHHHhh----------c-----------cccCCC
Q 023586 148 NKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP----IN-LVFAVIAEIVL----------D-----------LEDKLH 201 (280)
Q Consensus 148 ~~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p----i~-l~~~~~~E~~~----------~-----------~~d~~~ 201 (280)
++.|....++++|+++|...+.+..++|++.+.. .+ +..++++|++. + .+|..|
T Consensus 173 ~~~g~~~~~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~g~~~PGD~gY 252 (324)
T PLN00171 173 DLFGAVHFAEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINY 252 (324)
T ss_pred ccCCccccCccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCccccCCCcccC
Confidence 8877654456789999987776666777665421 11 22233444420 1 124468
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhcc
Q 023586 202 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271 (280)
Q Consensus 202 PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~ 271 (280)
|||. |||||+.+|+++++++|++|||||||||+||+||++|+.+||++|++||.+|++||+||||++++.
T Consensus 253 PGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL~~hladP~~~Ni~~~~~ 323 (324)
T PLN00171 253 PGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSLK 323 (324)
T ss_pred CcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHHHHHhcCccccchHHHhc
Confidence 9887 999999999999999999999999999999999999999999999999999999999999999874
No 4
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=1.8e-58 Score=425.09 Aligned_cols=188 Identities=41% Similarity=0.782 Sum_probs=161.7
Q ss_pred hhhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcC
Q 023586 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (280)
Q Consensus 71 ~~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~ 150 (280)
..+.+|+++|++|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||++++.
T Consensus 53 ~~~~~~~~~r~~w~Pg-----~~~P~~LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~ 127 (267)
T PLN00098 53 SVCEPLPPDRPLWFPG-----SSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERL 127 (267)
T ss_pred cccccCCCCccccCCC-----CCCCccCCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 3567799999999997 78999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCcchhhhccccccCCccccccCchh---HHHHHHHHHHHHhh--c-------------------cccCCCCCCC-
Q 023586 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNI---PINLVFAVIAEIVL--D-------------------LEDKLHPGGP- 205 (280)
Q Consensus 151 G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~---pi~l~~~~~~E~~~--~-------------------~~d~~~PGg~- 205 (280)
|.. ....|+++|.. .|++.+. .++++++.++|... + ..|.+||||+
T Consensus 128 g~~--~~~~w~~Ag~~-------~~~~~~~~l~~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~~~~~~d~~yPGg~~ 198 (267)
T PLN00098 128 GFI--ENFSWYDAGAR-------EYFADPTTLFVVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNKTNPKPDVGYPGGLW 198 (267)
T ss_pred Ccc--cccccccccch-------hhccCchHHHHHHHHHHHHHHHHHhhcccCCccccccccccccccCCCCCCCCCCcc
Confidence 653 24579998753 2333322 23556667788631 0 0145799999
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhccC
Q 023586 206 FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 272 (280)
Q Consensus 206 FDPlgl~~-dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~~ 272 (280)
||||||.+ |+++++++|+||||||||||||++||++|+.+||++|++||.+|++||+|+||++++.+
T Consensus 199 FDPlgl~~~d~~~~~~~k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL~~hladP~~~n~~~~~~~ 266 (267)
T PLN00098 199 FDPMMWGRGSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266 (267)
T ss_pred CCcccCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHHHHHhcCcccccchhhccC
Confidence 99999975 89999999999999999999999999999999999999999999999999999999865
No 5
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=5.8e-58 Score=418.31 Aligned_cols=181 Identities=40% Similarity=0.769 Sum_probs=154.5
Q ss_pred hhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCC
Q 023586 73 AKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (280)
Q Consensus 73 ~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~ 152 (280)
+.+++.+|++|+|+ .+.|+||||++|||+|||||||++++++++|||++||+||||||||++|+++||++++.|.
T Consensus 46 ~~~~~~~r~~W~P~-----~~~P~~LdG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~ 120 (250)
T PLN00101 46 SFKVEAKKGEWLPG-----LASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI 120 (250)
T ss_pred cccccccccccCCC-----CCCCcccCCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCC
Confidence 45667899999997 7899999999999999999999999999999999999999999999999999999998775
Q ss_pred CCCCcchhhhccccccCCccccccCchhHH---HHHHHHHHHHhh--c-------------------cccCCCCCCCCCC
Q 023586 153 NCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL--D-------------------LEDKLHPGGPFDP 208 (280)
Q Consensus 153 ~~~p~~~W~~aG~~~~~~~~l~~~g~~~pi---~l~~~~~~E~~~--~-------------------~~d~~~PGg~FDP 208 (280)
.. .+.|+++|+. .|++....+ +++++.++|... + ..|..||||.|||
T Consensus 121 ~~--~p~w~~ag~~-------~~~~~~~~l~~ie~~~mg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~gd~~YPGG~FDP 191 (250)
T PLN00101 121 IN--APQWYDAGKA-------EYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNP 191 (250)
T ss_pred cC--CCccccccch-------hhcccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccCCccccCCCCccCc
Confidence 43 3479998753 344443332 345556778752 1 1244699999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhcc
Q 023586 209 LGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVIS 271 (280)
Q Consensus 209 lgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~ 271 (280)
|||+++ +++|+||||||||||+|++||++|+++||+||++||.+|++||+||||+++++
T Consensus 192 Lgl~~~----~~~k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL~~hladP~~~ni~~~~~ 250 (250)
T PLN00101 192 LNFAPT----EEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTLS 250 (250)
T ss_pred cCCCcc----HHHHHHHHhhcchHHHHHhhHhheehccCCChHHHHHHHhcCCcccchhhhcC
Confidence 999875 37899999999999999999999999999999999999999999999999874
No 6
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=9.4e-57 Score=408.85 Aligned_cols=178 Identities=42% Similarity=0.667 Sum_probs=152.7
Q ss_pred CCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCCC
Q 023586 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (280)
Q Consensus 77 g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p 156 (280)
+++|++|||+ .+.|+||||++|||||||||||++++++++|||++||+||||||||++|+++||+++..|...
T Consensus 41 ~~~R~~w~Pg-----~~~P~~LdG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~-- 113 (244)
T PLN00097 41 AADRPTWLPG-----KAAAAHLDGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMAD-- 113 (244)
T ss_pred CCCCcccCCC-----CCCccccCCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCccc--
Confidence 5799999997 789999999999999999999999999999999999999999999999999999998876532
Q ss_pred cchhhhccccccCCccccccCch---hHHHHHHHHHHHHhh--c--------------------cccCCCCCCCCCCCCC
Q 023586 157 EAVWFKTGALLLDGNTLNYFGKN---IPINLVFAVIAEIVL--D--------------------LEDKLHPGGPFDPLGL 211 (280)
Q Consensus 157 ~~~W~~aG~~~~~~~~l~~~g~~---~pi~l~~~~~~E~~~--~--------------------~~d~~~PGg~FDPlgl 211 (280)
...|+++++.. .|+... ..++++++.++|... + ..|..||||.||||||
T Consensus 114 ~p~W~~Ag~~~------~~~~~~~~l~~i~~~lmg~~E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~FDPlgl 187 (244)
T PLN00097 114 LPNWIDAAKWD------GYWAGAGPLFFIQMAMFNWAEIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGLFDKFGW 187 (244)
T ss_pred CCccccCCcch------hccccchhHHHHHHHHHHHHHHHHhhcccCCCccccccccccccCCcccccCCCCCCCCcccc
Confidence 34799988532 133221 223455566778642 0 0233599999999999
Q ss_pred CCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchh
Q 023586 212 AKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLL 267 (280)
Q Consensus 212 ~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~ 267 (280)
.+|+++++++|+||||||||||+|++||++|+.+||+||++||.+|++||+||||+
T Consensus 188 ~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL~~HladP~~~n~~ 243 (244)
T PLN00097 188 AKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNGIF 243 (244)
T ss_pred CCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHHHHHhcCccccccC
Confidence 99999999999999999999999999999999999999999999999999999987
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=7.4e-57 Score=413.82 Aligned_cols=193 Identities=41% Similarity=0.718 Sum_probs=160.0
Q ss_pred hhcCCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCCh-----hhHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 023586 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP-----DDFSKYQAYELIHARWAMLGAAGFIIPEAFN 148 (280)
Q Consensus 74 ~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p-----~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~ 148 (280)
.+|+++|++|+|+ .+.|+||||++|||||||||||++.. .+.+|+|++|||||||||||++|+++||+++
T Consensus 36 ~~~~~~r~~w~p~-----~~~P~yLdG~lPGD~GFDPlGL~~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~ 110 (262)
T PLN00048 36 AKQGADRQLWFAS-----KQSLSYLDGTLPGDFGFDPLGLSDPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILG 110 (262)
T ss_pred CCCCCCCceecCC-----CCCccccCCCCCCccCCCccccCCccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhc
Confidence 3457899999996 78999999999999999999998421 2679999999999999999999999999998
Q ss_pred cCCCCCC-CcchhhhccccccCCccccccCchhHH---HHHHHHHHHHhh--c---------------------cccCCC
Q 023586 149 KFGANCG-PEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVL--D---------------------LEDKLH 201 (280)
Q Consensus 149 ~~G~~~~-p~~~W~~aG~~~~~~~~l~~~g~~~pi---~l~~~~~~E~~~--~---------------------~~d~~~ 201 (280)
+.|.... ....|+++|+.. .....+|++.+..+ +++++.++|... + ..|..|
T Consensus 111 ~~g~~~~~~~~~w~~ag~~~-~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~~~~~~~~d~~y 189 (262)
T PLN00048 111 KAGLIPQETALPWFQSGVIP-PAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLEKGLGGSGNPAY 189 (262)
T ss_pred cCCccccccccccccccccc-cccccccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccchhcccccccccc
Confidence 8775421 123699988632 23345687765432 344555777641 1 015579
Q ss_pred CCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhccC
Q 023586 202 PGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 272 (280)
Q Consensus 202 PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~~ 272 (280)
|||+ ||||||.+|+++++++|++|||||||||+|++||++|+++||+||++||.+|++||+||||++++..
T Consensus 190 PG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~~hladP~~~ni~~~~~~ 261 (262)
T PLN00048 190 PGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNNVLTNLKF 261 (262)
T ss_pred ccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHHHHhcCcccccccccccc
Confidence 9997 9999999999999999999999999999999999999999999999999999999999999999854
No 8
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=5.8e-56 Score=405.76 Aligned_cols=189 Identities=40% Similarity=0.705 Sum_probs=158.5
Q ss_pred hcCCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCC
Q 023586 75 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 154 (280)
Q Consensus 75 ~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~ 154 (280)
.++++|++|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++..|...
T Consensus 40 ~~~~~R~~wlP~-----~~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~~ 114 (252)
T PLN00147 40 VVAQERPTWLPG-----LDPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIRN 114 (252)
T ss_pred cCCCCccccCCC-----CCCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCcC
Confidence 557899999996 789999999999999999999999999999999999999999999999999999988766432
Q ss_pred CCcchhhhccccccCCccccccCchhHHHHHHHHHHHHhh--c---------------------cccCCCCCCC-CCCCC
Q 023586 155 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL--D---------------------LEDKLHPGGP-FDPLG 210 (280)
Q Consensus 155 ~p~~~W~~aG~~~~~~~~l~~~g~~~pi~l~~~~~~E~~~--~---------------------~~d~~~PGg~-FDPlg 210 (280)
.+.|++++...++-... .....+++++++++|... + ..+..||||+ |||||
T Consensus 115 --~p~w~~ag~~~~~~~~~---~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~~~~~~~~~~yPGd~~FDPlG 189 (252)
T PLN00147 115 --LPVWYEAGAVKFEFAST---RTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLEAALEGLEPGYPGGPLFNPLG 189 (252)
T ss_pred --Ccchhhcccchhccccc---hHHHHHHHHHHHHHHHHhhccccCCCccccccccccccccccccCCCCcccccCCccc
Confidence 35799887543310000 001123556667888641 0 0134599998 99999
Q ss_pred CCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhccCC
Q 023586 211 LAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGN 273 (280)
Q Consensus 211 l~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~~~ 273 (280)
|.+|+++++++|+||||||||||+|++||++|+++||+||++||.+|++||+||||++++.++
T Consensus 190 l~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~~hladP~~~ni~~~~~~~ 252 (252)
T PLN00147 190 LAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLLTHLSDPWHKTIIQTLSHS 252 (252)
T ss_pred cCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHHHHhcCcccchhhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999998764
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=5.6e-56 Score=404.23 Aligned_cols=182 Identities=43% Similarity=0.821 Sum_probs=151.7
Q ss_pred CCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCCCc
Q 023586 78 PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPE 157 (280)
Q Consensus 78 ~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p~ 157 (280)
.+|..|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++.
T Consensus 42 ~~~~~w~P~-----~~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~-------- 108 (243)
T PLN00099 42 TMSADWMPG-----QPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL-------- 108 (243)
T ss_pred cccccccCC-----CCCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc--------
Confidence 477899997 7899999999999999999999999999999999999999999999999999999753
Q ss_pred chhhhcccc-ccCCccccccCchhHH---------HHHHHHHHHHhh----ccccCCCCCCCCCCCCCCCCHHHHHHHHH
Q 023586 158 AVWFKTGAL-LLDGNTLNYFGKNIPI---------NLVFAVIAEIVL----DLEDKLHPGGPFDPLGLAKDPDQFALLKV 223 (280)
Q Consensus 158 ~~W~~aG~~-~~~~~~l~~~g~~~pi---------~l~~~~~~E~~~----~~~d~~~PGg~FDPlgl~~dp~~~~~~k~ 223 (280)
..|++++.. .+.++...|++.+.++ ++++++++|... +.++..||||.||||||.+|+++++++|+
T Consensus 109 ~~w~~a~~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~~~~~~~~yPGd~FDPlGl~kd~~~~~~~k~ 188 (243)
T PLN00099 109 GNWVKAQEWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKFEEYKV 188 (243)
T ss_pred CCcccccchhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhccCCCCCCcCCCCcCCcccccCCHHHHHHHHH
Confidence 136665531 2233334455543321 344455677642 12356799999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHh-hhcCCcchhhhhhhhcCCcccchhhhccC
Q 023586 224 KEIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVISG 272 (280)
Q Consensus 224 kELkNGRLAMlA~lG~~~Q~-~vtG~gp~~~l~~~~~dP~~~n~~~~~~~ 272 (280)
|||||||||||||+||++|+ .+||++|++||.+|++||+|+|+++.+.+
T Consensus 189 kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~~hladp~~~N~~~~~~~ 238 (243)
T PLN00099 189 KEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIIIP 238 (243)
T ss_pred HHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHHHHhcCCccCceeeeecc
Confidence 99999999999999999999 57999999999999999999999999876
No 10
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=3.9e-53 Score=385.06 Aligned_cols=179 Identities=33% Similarity=0.557 Sum_probs=144.8
Q ss_pred CCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCCC
Q 023586 77 GPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (280)
Q Consensus 77 g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p 156 (280)
..+|++|+|+ .+.|+||||++|||||||||||++++++++||||+|||||||||||++|+++||+++.
T Consensus 32 ~~~r~~W~P~-----~~~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~------- 99 (246)
T PLN00100 32 ARARPMWYPG-----ATAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL------- 99 (246)
T ss_pred cCCCcccCCC-----CCCCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc-------
Confidence 3489999997 7899999999999999999999999999999999999999999999999999999652
Q ss_pred cchhhhccccccCCccccccCchhHHHHHHHHHHHHhhc-----cccCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhH
Q 023586 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLD-----LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGR 230 (280)
Q Consensus 157 ~~~W~~aG~~~~~~~~l~~~g~~~pi~l~~~~~~E~~~~-----~~d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGR 230 (280)
+.|+++|...+.. +.. ....+++++++++|.... ..+..+||++ ||||||.+ +++|+|||||||
T Consensus 100 -P~w~~ag~~~~~~---~~~-~l~~iqill~g~~E~~r~~~~~~~g~~~~pg~~~FDPLGl~~-----~~~K~KEIkNGR 169 (246)
T PLN00100 100 -PKFWEAGAEKYGL---DLQ-TLVLIQVVVMAVLEAARYRGFMKTGESGVLSFFPFDPTGMDS-----PEMKVKEVKNGR 169 (246)
T ss_pred -cchhhcchhhhcc---chh-HHHHHHHHHHHHHhhhcccccccccccCCCCCCCCCcccccH-----HHHHHHHHhhhh
Confidence 3488876533211 100 011234556667887521 1223468888 99999963 579999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhccCCcccCC
Q 023586 231 LAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAP 278 (280)
Q Consensus 231 LAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~~~~~~~~ 278 (280)
|||+||+||++|+.+||++|++||.+|++||+|+||+++.. +.|.++
T Consensus 170 LAMlA~lG~~~Q~~vTG~gPlenL~~hladP~~~ni~~~~~-~~~~~~ 216 (246)
T PLN00100 170 LAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVNIFTSSV-GPETVA 216 (246)
T ss_pred HHHHHHHHHhhhhhhcCCChHHHHHHhccCCcccccccCCC-CCccch
Confidence 99999999999999999999999999999999999999743 344443
No 11
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=4.9e-46 Score=340.33 Aligned_cols=168 Identities=38% Similarity=0.638 Sum_probs=130.6
Q ss_pred CCCccccccC-ccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCCC
Q 023586 78 PDRRIFLPEG-LLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGP 156 (280)
Q Consensus 78 ~~r~~~lp~g-~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p 156 (280)
.+|+.|+|+- +-.....|+||||++|||+|||||||++|+++++|||++||+||||||||++|+++||+++.
T Consensus 49 ~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g------- 121 (255)
T PLN00170 49 QPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG------- 121 (255)
T ss_pred CCCccccCCCCCCcccCCcccccccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccC-------
Confidence 5788899851 01122579999999999999999999999999999999999999999999999999999852
Q ss_pred cchhhhccccccCCccccccCchhHHHHHHHHHHHHhh--c-------------------------cccCCCCCCC-CCC
Q 023586 157 EAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVL--D-------------------------LEDKLHPGGP-FDP 208 (280)
Q Consensus 157 ~~~W~~aG~~~~~~~~l~~~g~~~pi~l~~~~~~E~~~--~-------------------------~~d~~~PGg~-FDP 208 (280)
..|+++|.....-.... +.....++++++.++|... + ..+..||||. |||
T Consensus 122 -~~w~~aG~~~~~~~p~~-~~~l~~~q~~lmg~~E~~R~~~~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDP 199 (255)
T PLN00170 122 -IPWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDP 199 (255)
T ss_pred -CChhhCCccccccCccc-hHHHHHHHHHHhhhhhheeeccccCCcccccccccccccccccccccCCCcccCCCcccCc
Confidence 35999886321000000 0111112455666778652 0 0134599997 999
Q ss_pred CCCCC---------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhh
Q 023586 209 LGLAK---------DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA 255 (280)
Q Consensus 209 lgl~~---------dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~ 255 (280)
|||.+ |+++++++|+||||||||||+|++||++|+ .||++|+++|.
T Consensus 200 LGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~~Qa-~~g~~p~~~l~ 254 (255)
T PLN00170 200 LGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 254 (255)
T ss_pred cccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHheee-ccCCCchhhhc
Confidence 99985 789999999999999999999999999999 69999999873
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=1.2e-39 Score=277.62 Aligned_cols=142 Identities=42% Similarity=0.655 Sum_probs=108.9
Q ss_pred CCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCC--CCcchhhhccccccCCc
Q 023586 94 IPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC--GPEAVWFKTGALLLDGN 171 (280)
Q Consensus 94 ~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~--~p~~~W~~aG~~~~~~~ 171 (280)
.|+||||+++||+||||+||++++ +++|||++|||||||||||++|++++|++++++... .....|.+++.
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~------ 73 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGG------ 73 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTS------
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhh------
Confidence 489999999999999999999986 999999999999999999999999999998765421 11233665431
Q ss_pred cccccCchhHHH-HHHHHHHHHhh--c--------cccCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023586 172 TLNYFGKNIPIN-LVFAVIAEIVL--D--------LEDKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGF 239 (280)
Q Consensus 172 ~l~~~g~~~pi~-l~~~~~~E~~~--~--------~~d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~ 239 (280)
++.. ....++ +++++++|... . ..+..+||+. |||+|+.+|+++++++|++||||||||||||+|+
T Consensus 74 -~~~~-~~~~~~~l~~ig~~e~~~~~~~~~~~~~~~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~ 151 (156)
T PF00504_consen 74 -IPVP-AAGWAQILLFIGALEPWRQQGVPEPGEGGGKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGF 151 (156)
T ss_dssp -SSSH-SHHHHHHHHHHHHHHHHHHHHTTTCCTTSSSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhh-hHHHHHHHHHHhHhhhhhcccccCCcccccccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 001112 33444677651 1 1345799998 9999999889999999999999999999999999
Q ss_pred HHHhh
Q 023586 240 FLQAY 244 (280)
Q Consensus 240 ~~Q~~ 244 (280)
++|+.
T Consensus 152 ~~~e~ 156 (156)
T PF00504_consen 152 VAQEA 156 (156)
T ss_dssp HHHH-
T ss_pred HHhcC
Confidence 99983
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=1.8e-38 Score=284.25 Aligned_cols=151 Identities=30% Similarity=0.396 Sum_probs=113.2
Q ss_pred CCCCCCCCCCCCCCCcccCCCCC-ChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCC--CCCcchhhhccccccC
Q 023586 93 EIPEYLTGEVPGDYGYDPFGLSK-KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGAN--CGPEAVWFKTGALLLD 169 (280)
Q Consensus 93 ~~P~~L~G~~pGd~GFDPLGLs~-~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~--~~p~~~W~~aG~~~~~ 169 (280)
..|+.|||. .||+|||||||++ ++++++|||++|||||||||||++|+++||.++..|.. ....+.|+++...
T Consensus 45 ~~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~~~~~~~~p~~~~a~~~--- 120 (209)
T PLN00089 45 AKEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVRIPGEAYSFAAIPKTIDAHDA--- 120 (209)
T ss_pred cCCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCccccccccccHHHHHHh---
Confidence 346679999 9999999999996 46789999999999999999999999999997765531 1111122221111
Q ss_pred CccccccCchhHHHHH-HHHHHHHhh-------ccccCCCCCCC-CCCCCCC-CCHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023586 170 GNTLNYFGKNIPINLV-FAVIAEIVL-------DLEDKLHPGGP-FDPLGLA-KDPDQFALLKVKEIKNGRLAMFAMLGF 239 (280)
Q Consensus 170 ~~~l~~~g~~~pi~l~-~~~~~E~~~-------~~~d~~~PGg~-FDPlgl~-~dp~~~~~~k~kELkNGRLAMlA~lG~ 239 (280)
+...|. -+|++ +++++|+.. ..++.++|||+ ||||||. +|+++++++|++||||||||||||+||
T Consensus 121 ---~~~~g~--~~Qi~~~ig~~E~~~~~~~~~~~~~~~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~ 195 (209)
T PLN00089 121 ---LLKSGA--MIQIFAWIGFVDLAVSAPAAAAAAEFDRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGI 195 (209)
T ss_pred ---hccccc--HHHHHHHHHHHHHHHhhccccccccCCCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 000111 12443 455788531 12345789999 9999995 689999999999999999999999999
Q ss_pred HHHhhhcCCcchh
Q 023586 240 FLQAYVTGEGPVE 252 (280)
Q Consensus 240 ~~Q~~vtG~gp~~ 252 (280)
++|+.+||++.++
T Consensus 196 ~~~~~~tg~g~~~ 208 (209)
T PLN00089 196 ATGSAITGHGFPY 208 (209)
T ss_pred HHHHHHcCCCCCc
Confidence 9999999998753
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.97 E-value=9.9e-32 Score=239.71 Aligned_cols=142 Identities=20% Similarity=0.347 Sum_probs=95.4
Q ss_pred cccCCCCC--ChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCCCcchhhhc-cccccCCccccccCchhHHHH
Q 023586 108 YDPFGLSK--KPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKT-GALLLDGNTLNYFGKNIPINL 184 (280)
Q Consensus 108 FDPLGLs~--~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p~~~W~~a-G~~~~~~~~l~~~g~~~pi~l 184 (280)
|||+||++ ++++++|||++|||||||||||++|+++||.+.+++.........+.. ......-..+...| .+|+
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g---~~qi 123 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAG---LLQI 123 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhH---HHHH
Confidence 99999974 689999999999999999999999999999855443221100111110 00000000111111 1233
Q ss_pred -HHHHHHHHhh--ccc-cCCCCCCC-CC--CCCCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchh
Q 023586 185 -VFAVIAEIVL--DLE-DKLHPGGP-FD--PLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVE 252 (280)
Q Consensus 185 -~~~~~~E~~~--~~~-d~~~PGg~-FD--Plgl~~-dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~ 252 (280)
++++++|+.. +.. +.++|||+ ++ ++||.. |+++++++|+|||||||||||||+||++|+.++|+.|+-
T Consensus 124 ~~~ig~~E~~~~~~~~~~~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~~~~~ 199 (202)
T PLN00120 124 LAFIGFLELAVMKDITGEGEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVELPII 199 (202)
T ss_pred HHHHHHHHHHhhcccccCCCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCC
Confidence 3445788642 211 25789964 22 455543 788999999999999999999999999999999998863
No 15
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.56 E-value=2.8e-15 Score=138.98 Aligned_cols=70 Identities=31% Similarity=0.537 Sum_probs=58.4
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhh--h-----hhhhcCCcccchh
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVEN--L-----AKHLSDPFANNLL 267 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~--l-----~~~~~dP~~~n~~ 267 (280)
|..+|||+ ||||||.+|+++++++|++||||||+||+|++|+++|+++++.+++++ + .+++.+|....++
T Consensus 76 dG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~~~l~~~ 153 (267)
T PLN00098 76 DGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADPTTLFVV 153 (267)
T ss_pred CCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCchHHHHH
Confidence 66789999 999999999999999999999999999999999999999998877653 2 1345666544333
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.54 E-value=6.3e-15 Score=135.50 Aligned_cols=54 Identities=39% Similarity=0.682 Sum_probs=51.3
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcch
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~ 251 (280)
|..+|||+ ||||||.+|+++++++|++||+||||||||++|+++|+++|+.+++
T Consensus 67 dG~~PGD~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 67 NGSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred CCCCCCccCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 56789999 9999999999999999999999999999999999999999998876
No 17
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.49 E-value=1.8e-14 Score=132.61 Aligned_cols=57 Identities=26% Similarity=0.473 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCC
Q 023586 95 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (280)
Q Consensus 95 P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (280)
+..+++.+|||++||||||++|+++++++|.+||||||+||+|++|+++|+++++.|
T Consensus 172 ~~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~G 228 (252)
T PLN00147 172 LEGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTG 228 (252)
T ss_pred ccccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence 456677799999999999999999999999999999999999999999999988655
No 18
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.44 E-value=4.9e-14 Score=130.46 Aligned_cols=53 Identities=25% Similarity=0.471 Sum_probs=49.4
Q ss_pred CCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCC
Q 023586 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (280)
Q Consensus 99 ~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (280)
|+.+|||++||||||++++++++++|..||||||+||+|++|+++|+++++.|
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~g 238 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVG 238 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCC
Confidence 34699999999999999999999999999999999999999999999988655
No 19
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.41 E-value=1.4e-13 Score=123.88 Aligned_cols=53 Identities=30% Similarity=0.511 Sum_probs=48.3
Q ss_pred CCCCCCCCcccCCCC-CChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCC
Q 023586 100 GEVPGDYGYDPFGLS-KKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (280)
Q Consensus 100 G~~pGd~GFDPLGLs-~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~ 152 (280)
+..|||+||||+||. +|+++++++|.+||||||+||+|++|+++||++++.|.
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~ 206 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGF 206 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 468999999999994 68999999999999999999999999999999876553
No 20
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.41 E-value=1.9e-13 Score=125.91 Aligned_cols=52 Identities=40% Similarity=0.639 Sum_probs=49.0
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCc
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~g 249 (280)
|..+|||+ ||||+|.+|+++++++|++||+|||+||+|++|+++|++++|..
T Consensus 71 ~g~~PGd~GFDPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~ 123 (255)
T PLN00170 71 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 123 (255)
T ss_pred cccCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCC
Confidence 56789999 99999999999999999999999999999999999999998863
No 21
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.41 E-value=2e-13 Score=125.19 Aligned_cols=53 Identities=30% Similarity=0.466 Sum_probs=49.6
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcc
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp 250 (280)
|...|||+ ||||||++|+++++++|++||+|||+||+|++|+++|+++++.+.
T Consensus 58 dG~~pGD~GfDPlGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~ 111 (244)
T PLN00097 58 DGSLPCDYGFDPLNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGM 111 (244)
T ss_pred CCCCCCCCCCCccccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCc
Confidence 56789999 999999999999999999999999999999999999999988654
No 22
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.40 E-value=2e-13 Score=129.17 Aligned_cols=53 Identities=36% Similarity=0.422 Sum_probs=49.4
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcc
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGP 250 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp 250 (280)
|...|||+ ||||||++|+++++++|++||||||+||+|++|+++|+++++.+.
T Consensus 124 dG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~ 177 (324)
T PLN00171 124 TGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGA 177 (324)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCc
Confidence 67789999 999999999999999999999999999999999999999876543
No 23
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.40 E-value=1.6e-13 Score=128.35 Aligned_cols=53 Identities=34% Similarity=0.511 Sum_probs=49.5
Q ss_pred CCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCC
Q 023586 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (280)
Q Consensus 99 ~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (280)
+..+|||++||||||++++++++++|++|||||||||+|++|+++|+++++.|
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~G 263 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKG 263 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC
Confidence 44589999999999999999999999999999999999999999999998765
No 24
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.39 E-value=3.4e-13 Score=124.83 Aligned_cols=52 Identities=31% Similarity=0.511 Sum_probs=48.4
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCc
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEG 249 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~g 249 (280)
|...|||+ ||||||++|+++++++|++||+|||+||+|++|+++|+++++.+
T Consensus 67 dg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g 119 (262)
T PLN00025 67 TGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNG 119 (262)
T ss_pred cCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCC
Confidence 56689999 99999999999999999999999999999999999999998653
No 25
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.36 E-value=5.6e-13 Score=122.28 Aligned_cols=50 Identities=36% Similarity=0.539 Sum_probs=47.0
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcC
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG 247 (280)
|..+|||+ ||||||++++++++++|.+||||||+||+|++|+++|++++.
T Consensus 49 dg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~~~~ 99 (246)
T PLN00100 49 DGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDAVGL 99 (246)
T ss_pred CCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHHHHhcc
Confidence 66789999 999999999999999999999999999999999999999753
No 26
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.32 E-value=1.3e-12 Score=119.98 Aligned_cols=50 Identities=32% Similarity=0.479 Sum_probs=46.8
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcC
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG 247 (280)
|...|||+ ||||||++++++++++|.+||||||+||+|++|+++|++++.
T Consensus 58 dg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 58 DGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred CCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 66789998 999999999999999999999999999999999999999753
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.30 E-value=1.7e-12 Score=110.68 Aligned_cols=50 Identities=46% Similarity=0.733 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q 023586 97 YLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA 146 (280)
Q Consensus 97 ~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~ 146 (280)
+.++..|||.+|||+|+.++++...++|.+||+|||+||+|++|++++|.
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46778999999999999988999999999999999999999999999983
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.04 E-value=1.4e-10 Score=104.02 Aligned_cols=46 Identities=33% Similarity=0.557 Sum_probs=39.2
Q ss_pred CCCCCC-------CCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q 023586 100 GEVPGD-------YGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 149 (280)
Q Consensus 100 G~~pGd-------~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~ 149 (280)
+..||| +||||+ ++++.+++|.+||||||+||+|++|++++|.++.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~----~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g 194 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSF----DEETKLKKRAIELNQGRAAQMGILALMVHEQLGV 194 (202)
T ss_pred CCCCCccCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 578885 556655 6788999999999999999999999999998753
No 29
>PHA02337 putative high light inducible protein
Probab=98.15 E-value=2.2e-06 Score=56.69 Aligned_cols=28 Identities=32% Similarity=0.233 Sum_probs=26.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhcCCcc
Q 023586 223 VKEIKNGRLAMFAMLGFFLQAYVTGEGP 250 (280)
Q Consensus 223 ~kELkNGRLAMlA~lG~~~Q~~vtG~gp 250 (280)
..|+-||||||++|+..+.-+++||++-
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999864
No 30
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.89 E-value=9.9e-06 Score=71.13 Aligned_cols=46 Identities=37% Similarity=0.421 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhhc-CCcchhhhhhhhcCC
Q 023586 216 DQFALLKVKEIKNGRLAMFAMLGFFLQAYVT-GEGPVENLAKHLSDP 261 (280)
Q Consensus 216 ~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vt-G~gp~~~l~~~~~dP 261 (280)
.+..+.|..|+.||||||++|+--++-|++| |+|++.|+...-.-|
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ETGvP 176 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNGETGVP 176 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhccccCCc
Confidence 4567888899999999999999999999999 999999886443333
No 31
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=97.45 E-value=8.8e-05 Score=67.86 Aligned_cols=36 Identities=33% Similarity=0.501 Sum_probs=32.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhh
Q 023586 221 LKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAK 256 (280)
Q Consensus 221 ~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~ 256 (280)
+...|+-|||+|||||+..++-|++||+|.+.|+..
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 356899999999999999999999999999988854
No 32
>PHA02337 putative high light inducible protein
Probab=97.40 E-value=0.00011 Score=48.67 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=25.4
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcCCC
Q 023586 124 QAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (280)
Q Consensus 124 ReaELkHGR~AMLA~vG~lv~E~l~~~G~ 152 (280)
..+|+.|||+||+|++-.++.|++++.+.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq~i 31 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQII 31 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 36899999999999999999999886553
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=95.66 E-value=0.0048 Score=56.71 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=26.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcCC
Q 023586 123 YQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (280)
Q Consensus 123 ~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (280)
+.++|+.|||+||+|++-.++.|++++.|
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~g 187 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVG 187 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCc
Confidence 36789999999999999999999988655
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=93.15 E-value=0.043 Score=48.59 Aligned_cols=35 Identities=37% Similarity=0.510 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhhhhh-cCCC
Q 023586 118 DDFSKYQAYELIHARWAMLGAAGFIIPEAFN-KFGA 152 (280)
Q Consensus 118 ~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~-~~G~ 152 (280)
...+..+..|+.+||+||||++-.++.|+++ +.|.
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGi 165 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGP 165 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcch
Confidence 4556667789999999999999999999998 6654
No 35
>PLN02449 ferrochelatase
Probab=44.30 E-value=16 Score=37.28 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhhcCCcch
Q 023586 231 LAMFAMLGFFLQAYVTGEGPV 251 (280)
Q Consensus 231 LAMlA~lG~~~Q~~vtG~gp~ 251 (280)
+||+||+.+++-++++|.||+
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNL 483 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcC
Confidence 999999999999999999996
No 36
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=22.49 E-value=38 Score=26.81 Aligned_cols=16 Identities=38% Similarity=0.731 Sum_probs=11.9
Q ss_pred ccCCCCCChhhHHHHHHHHHhhhhhh
Q 023586 109 DPFGLSKKPDDFSKYQAYELIHARWA 134 (280)
Q Consensus 109 DPLGLs~~p~~l~~~ReaELkHGR~A 134 (280)
||+|+|+. ||.|.|=.
T Consensus 53 D~~GvS~~----------ei~~~~~~ 68 (95)
T PF12621_consen 53 DPLGVSRQ----------EIEETRKV 68 (95)
T ss_pred CCCCCCHH----------HHHHhhcC
Confidence 89999965 77776644
No 37
>PHA00649 hypothetical protein
Probab=20.09 E-value=96 Score=23.95 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=22.0
Q ss_pred ChhhHHHHHHHHHhhhh-------hhhhhhhhhhhhhh
Q 023586 116 KPDDFSKYQAYELIHAR-------WAMLGAAGFIIPEA 146 (280)
Q Consensus 116 ~p~~l~~~ReaELkHGR-------~AMLA~vG~lv~E~ 146 (280)
+|+....||+ .+.|+| -.||+++|..+..+
T Consensus 32 ~P~~VEEFr~-D~~~~Rr~RKA~D~G~L~~VGL~~~~i 68 (83)
T PHA00649 32 VPEQVEEFRE-DLRFGRRMRKAADHGFLALVGLVAVAL 68 (83)
T ss_pred CHHHHHHHHH-HHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 5677777765 577776 36899999888765
Done!