Query 023586
Match_columns 280
No_of_seqs 256 out of 1213
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:22:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023586.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023586hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bhw_A Chlorophyll A-B binding 100.0 9.7E-62 3.3E-66 439.1 20.2 202 72-280 13-232 (232)
2 3pl9_A Chlorophyll A-B binding 100.0 6E-60 2.1E-64 428.2 9.3 183 74-270 5-242 (243)
3 2wsc_2 LHCA2, type II chloroph 100.0 2.4E-57 8.1E-62 417.5 0.5 187 71-272 55-268 (269)
4 2wsc_3 LHCA3, type II chloroph 100.0 1.5E-55 5.2E-60 406.8 4.7 190 76-272 52-275 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 6.8E-56 2.3E-60 404.7 2.2 182 72-272 44-250 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 2.3E-52 7.9E-57 379.3 4.4 181 79-272 44-239 (241)
7 3pl9_A Chlorophyll A-B binding 99.4 9E-14 3.1E-18 126.1 4.5 50 101-151 172-221 (243)
8 2bhw_A Chlorophyll A-B binding 99.4 2.5E-13 8.5E-18 122.6 6.9 50 198-247 37-87 (232)
9 2wsc_3 LHCA3, type II chloroph 99.4 1.1E-13 3.8E-18 127.7 2.0 55 98-152 199-253 (276)
10 2wsc_4 Chlorophyll A-B binding 99.3 5E-14 1.7E-18 128.6 -1.4 54 198-251 67-121 (251)
11 2wsc_2 LHCA2, type II chloroph 99.3 1.3E-13 4.4E-18 126.9 -0.5 54 198-251 78-132 (269)
12 2wsc_1 AT3G54890, LHCA1; photo 99.2 1.5E-12 5.1E-17 118.2 1.6 52 99-151 164-216 (241)
13 2wsc_H Photosystem I reaction 25.9 14 0.00049 30.4 0.0 26 1-26 1-30 (144)
No 1
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=9.7e-62 Score=439.09 Aligned_cols=202 Identities=51% Similarity=0.919 Sum_probs=172.0
Q ss_pred hhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCC
Q 023586 72 LAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (280)
Q Consensus 72 ~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (280)
.++|||+||++|| |+++ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++..|
T Consensus 13 ~~~~~~~~r~~~l--~~~~-~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 13 GSPWYGPDRVKYL--GPFS-GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp TCTTSSTTCCCTT--GGGC-CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccCCCccccc--Cccc-cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 4689999999999 4454 689999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCcchhhhccccccCCccccccCchhH-----------HHHHHHHHHHHhh-------ccccCCCCCCCCCCCCCCC
Q 023586 152 ANCGPEAVWFKTGALLLDGNTLNYFGKNIP-----------INLVFAVIAEIVL-------DLEDKLHPGGPFDPLGLAK 213 (280)
Q Consensus 152 ~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p-----------i~l~~~~~~E~~~-------~~~d~~~PGg~FDPlgl~~ 213 (280)
... ++..|+++|...+.+.+++|++.+.. ++++++.++|... ...|..||||+|||||+.+
T Consensus 90 ~~~-~~~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~g~~g~~~d~~~Pg~~fdPlgl~~ 168 (232)
T 2bhw_A 90 VKF-GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAD 168 (232)
T ss_dssp CCC-SCCSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHEETTEECSSSSCCCTTSCTTCTTC
T ss_pred cCC-cccccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhccCcccccccccCCCcccccchhcc
Confidence 543 36789999877666556677765421 1233344566541 1235679999999999999
Q ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhccCCcccCCCC
Q 023586 214 DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISGNAERAPTL 280 (280)
Q Consensus 214 dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~~~~~~~~~~ 280 (280)
|+++++++|++||||||||||||+|+++|+.+||++|++||.+|++|||+||+++++ .+.+|++
T Consensus 169 ~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l~~~~adP~~~n~~~~~---~~~~~~~ 232 (232)
T 2bhw_A 169 DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYA---TNFVPGK 232 (232)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHCTTTSSGGGGT---TTTCSCC
T ss_pred chHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHHHHHhcChHHhHHHHHH---HhhcCCC
Confidence 999999999999999999999999999999999999999999999999999999984 4577763
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=6e-60 Score=428.25 Aligned_cols=183 Identities=42% Similarity=0.805 Sum_probs=121.7
Q ss_pred hhcCCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChh-----------------------------------
Q 023586 74 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPD----------------------------------- 118 (280)
Q Consensus 74 ~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~----------------------------------- 118 (280)
.|++++|++|||+ .+.|+||||++|||||||||||+++||
T Consensus 5 ~~~~~~r~~w~pg-----~~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 79 (243)
T 3pl9_A 5 SGFSTDRPLWYPG-----AKAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTS 79 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcccccccCC-----CCCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhccccccccccccccccccccc
Confidence 3556799999997 899999999999999999999999987
Q ss_pred --------hHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCCCcchhhhccccccCCccccccCchhH--------H
Q 023586 119 --------DFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIP--------I 182 (280)
Q Consensus 119 --------~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p--------i 182 (280)
+++||||+|||||||||||++|+++||+++. ..|+++|...+.+ .++|++.+.+ +
T Consensus 80 ~~~~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g--------~~W~~aG~~~~~~-g~~y~g~p~~~~i~~l~~~ 150 (243)
T 3pl9_A 80 LQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTG--------ITWQDAGKVELIE-GSSYLGQPLPFSMTTLIWI 150 (243)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCTTTHHHHHHHS-CEEETTEEECCCHHHHHHH
T ss_pred cccccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcC--------ccccccccccccc-ccccccCccchhhHHHHHH
Confidence 3889999999999999999999999999862 3599888755432 3567765432 2
Q ss_pred HHHHHHHHHHhhc----cccCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhh
Q 023586 183 NLVFAVIAEIVLD----LEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHL 258 (280)
Q Consensus 183 ~l~~~~~~E~~~~----~~d~~~PGg~FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~ 258 (280)
++++++++|.... .++..||||+||||||.+|+++++++|++||||||||||||+|+++|+++||+||++||.+|+
T Consensus 151 qv~lmG~~E~~R~~~~~~~~~~~PG~~FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l~~Hl 230 (243)
T 3pl9_A 151 EVLVIGYIEFQRNAELDTEKRLYPGGTFDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNWVTHL 230 (243)
T ss_dssp HHHHHHHHHHHHHSCCCTTTTTCCCGGGCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCccccCCCcchhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHHHHHh
Confidence 4556667787632 234579999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccchhhhc
Q 023586 259 SDPFANNLLTVI 270 (280)
Q Consensus 259 ~dP~~~n~~~~~ 270 (280)
+||+||||++++
T Consensus 231 adP~~~ni~~~~ 242 (243)
T 3pl9_A 231 SDPLHTTILDRF 242 (243)
T ss_dssp HCSGGGSTTTTT
T ss_pred cCcchhhhhhhc
Confidence 999999999986
No 3
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=2.4e-57 Score=417.52 Aligned_cols=187 Identities=42% Similarity=0.780 Sum_probs=123.3
Q ss_pred hhhhhcCCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcC
Q 023586 71 ELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (280)
Q Consensus 71 ~~~~~~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~ 150 (280)
.+..|||++|++|+|+ .+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||++++.
T Consensus 55 ~~~~~~~~~r~~wlpg-----~~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~ 129 (269)
T 2wsc_2 55 TVCTVAEPDRPLWFPG-----STPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKL 129 (269)
T ss_dssp --------------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCT
T ss_pred eeecccCCCcccccCC-----CCCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccC
Confidence 4456899999999996 78999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcchhhhccccccCCccccccCchhH---HHHHHHHHHHHhh--c-------------------cccCCCCCCC-
Q 023586 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNIP---INLVFAVIAEIVL--D-------------------LEDKLHPGGP- 205 (280)
Q Consensus 151 G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~p---i~l~~~~~~E~~~--~-------------------~~d~~~PGg~- 205 (280)
|... .+.|+++|.. .|+..... +++++++++|... + ..|..||||+
T Consensus 130 G~~~--~p~w~~aG~~-------~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~~PG~~~ 200 (269)
T 2wsc_2 130 GILN--TPSWYTAGEQ-------EYFTDTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFPNNKLTGTDVGYPGGLW 200 (269)
T ss_dssp TSSS--CCCCCSTTSS-------SSCCCTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCSSSCCSSTTSCSCTTCSS
T ss_pred Cccc--Cccccccchh-------hhhcchHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccccccccCCCCCcc
Confidence 7653 3468887642 33433221 2455666788641 1 1244799999
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhh-hhhcCCcccchhhhccC
Q 023586 206 FDPLGLAK-DPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLA-KHLSDPFANNLLTVISG 272 (280)
Q Consensus 206 FDPlgl~~-dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~-~~~~dP~~~n~~~~~~~ 272 (280)
||||||.+ |+++++++|++||||||||||||+|+++|+.+||+||++||. +|++|| ||||++++..
T Consensus 201 fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~~~HladP-~~n~~~~~~~ 268 (269)
T 2wsc_2 201 FDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAAHLADP-HATIFAAFTP 268 (269)
T ss_dssp CCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCSCCCCCCS-CCCCCSSSCC
T ss_pred cCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHHHHHhcCc-ccchhhhccC
Confidence 99999985 678889999999999999999999999999999999999999 999999 9999999865
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=1.5e-55 Score=406.78 Aligned_cols=190 Identities=44% Similarity=0.765 Sum_probs=103.9
Q ss_pred cCCCCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhH------HHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q 023586 76 YGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDF------SKYQAYELIHARWAMLGAAGFIIPEAFNK 149 (280)
Q Consensus 76 ~g~~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l------~~~ReaELkHGR~AMLA~vG~lv~E~l~~ 149 (280)
||+||++|||+ .+.|+||||++|||+||||||| .|++++ +|||++|||||||||||++|++++|++++
T Consensus 52 ~g~~R~~wlP~-----~~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~ 125 (276)
T 2wsc_3 52 QGSDRPLWFAS-----KQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125 (276)
T ss_dssp ---------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSS
T ss_pred cCCCccccCCC-----CCCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcc
Confidence 89999999996 7899999999999999999999 678888 99999999999999999999999999988
Q ss_pred CCCCCCC-cchhhhccccccCCccccccCchhH---HHHHHHHHHHHhh--c---------------------cccCCCC
Q 023586 150 FGANCGP-EAVWFKTGALLLDGNTLNYFGKNIP---INLVFAVIAEIVL--D---------------------LEDKLHP 202 (280)
Q Consensus 150 ~G~~~~p-~~~W~~aG~~~~~~~~l~~~g~~~p---i~l~~~~~~E~~~--~---------------------~~d~~~P 202 (280)
.|..... ...|++.+.....+ ..+|++.+.. +++++++++|... + ..|..||
T Consensus 126 ~g~~~~~~p~~w~~~g~ip~aG-~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~~~~~~~~~d~~yP 204 (276)
T 2wsc_3 126 AGLIPQETALPWFRTGFIPPAG-TYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGEPAYP 204 (276)
T ss_dssp CCCCCCSSCCSSSSCCCC------CCCSCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCSCCCCCCCSSCTTT
T ss_pred cccccccCcchhhhhhcccchh-HHHHhccchHHHHHHHHHHHHHHHhhhcccccCCcccccccccccccccccccccCC
Confidence 7765321 23498866533222 3567665432 2455666788642 0 1144799
Q ss_pred CCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhccC
Q 023586 203 GGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 272 (280)
Q Consensus 203 Gg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~~ 272 (280)
||+ ||||||.+|+++++++|++||||||||||||+|+++|+++||++|++||.+|++|||||||++++..
T Consensus 205 G~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~~HladP~~~n~~~~~~~ 275 (276)
T 2wsc_3 205 GGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLTDPVHNNILTSLKF 275 (276)
T ss_dssp SSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-------------------
T ss_pred CcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHHHhccCcccchhhhhccC
Confidence 998 9999999888889999999999999999999999999999999999999999999999999999764
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=6.8e-56 Score=404.74 Aligned_cols=182 Identities=40% Similarity=0.766 Sum_probs=117.7
Q ss_pred hhhhcCC-CCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcC
Q 023586 72 LAKWYGP-DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKF 150 (280)
Q Consensus 72 ~~~~~g~-~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~ 150 (280)
...|||+ ||++|+|+ .+.|+||||++|||+|||||||++|+++++|||++|||||||||||++|+++||++++.
T Consensus 44 ~~~~~~~~~r~~~~pg-----~~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~ 118 (251)
T 2wsc_4 44 SASFKVEAKKGEWLPG-----LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSI 118 (251)
T ss_dssp ------------------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCS
T ss_pred cccccCcchhhhccCC-----CCCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCC
Confidence 3468999 89999986 78999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCcchhhhccccccCCccccccCchh---HHHHHHHHHHHHhh--c---c----------------ccCCCCCCCC
Q 023586 151 GANCGPEAVWFKTGALLLDGNTLNYFGKNI---PINLVFAVIAEIVL--D---L----------------EDKLHPGGPF 206 (280)
Q Consensus 151 G~~~~p~~~W~~aG~~~~~~~~l~~~g~~~---pi~l~~~~~~E~~~--~---~----------------~d~~~PGg~F 206 (280)
|... .+.|+++|.. +|++.+. -+++++++++|... + . .|..||||+|
T Consensus 119 g~~~--~p~w~~aG~~-------~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f~~~~~~~~d~~yPGg~F 189 (251)
T 2wsc_4 119 GIIN--VPKWYAAGKE-------EYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIF 189 (251)
T ss_dssp CSSC--CCCCSCCCSS-------SCSSCSSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSSCSSSSCCHHHHSSCCTT
T ss_pred CccC--CccccccchH-------hhhccchHHHHHHHHHHHHHHHHHhhcccCCCcccccccccccccccccccCCCCcc
Confidence 7653 3469887643 2333221 12455666777641 1 0 1235899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcchhhhhhhhcCCcccchhhhccC
Q 023586 207 DPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANNLLTVISG 272 (280)
Q Consensus 207 DPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~~~l~~~~~dP~~~n~~~~~~~ 272 (280)
||||+.+ ++++|+|||||||| ||||+||++|+.+||++|++||.+|++||+||||++++.+
T Consensus 190 DPLgl~~----~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~~hladP~~~n~~~~~~~ 250 (251)
T 2wsc_4 190 NPLNFAP----TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQTLGG 250 (251)
T ss_dssp CCCCCCS----SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTTTTTTCCCCCCSCC----
T ss_pred CccchhH----HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHHHHccChhhhhhhhhhcC
Confidence 9999976 56789999999999 9999999999999999999999999999999999998764
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=2.3e-52 Score=379.26 Aligned_cols=181 Identities=44% Similarity=0.834 Sum_probs=123.2
Q ss_pred CCccccccCccCCCCCCCCCCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCCCcc
Q 023586 79 DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEA 158 (280)
Q Consensus 79 ~r~~~lp~g~~~~~~~P~~L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~~~~p~~ 158 (280)
.|..|+|+ .+.|+||||++|||+|||||||++++++++||||+|||||||||||++|+++||+++..
T Consensus 44 m~~~w~P~-----~~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~-------- 110 (241)
T 2wsc_1 44 MAAHWMPG-----EPRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYG-------- 110 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC--------
T ss_pred cccccCCC-----CCCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCC--------
Confidence 46679996 78999999999999999999999999999999999999999999999999999997531
Q ss_pred hhhhccc-cccCCccccccCchhH---------HHHHHHHHHHHhh----ccccCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 023586 159 VWFKTGA-LLLDGNTLNYFGKNIP---------INLVFAVIAEIVL----DLEDKLHPGGPFDPLGLAKDPDQFALLKVK 224 (280)
Q Consensus 159 ~W~~aG~-~~~~~~~l~~~g~~~p---------i~l~~~~~~E~~~----~~~d~~~PGg~FDPlgl~~dp~~~~~~k~k 224 (280)
.|++++. ..+.+....|++.+++ ++++++.++|... +.++..||||.|||+|+.+|+++++++|++
T Consensus 111 ~~~~a~~~~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~~~~~~~yPgg~fDPlgl~~~~~~~~~~r~~ 190 (241)
T 2wsc_1 111 NWVKAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSKDPKKLEELKVK 190 (241)
T ss_dssp -----CCCCSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCCSSCCSSSCSCCSCSSSCSCSSSSCCCSCTT
T ss_pred ccccccchhccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccccccccchhHHHHHHHh
Confidence 2444332 1223333345443321 1233344667652 223567999999999999999999999999
Q ss_pred HHhhhHHHHHHHHHHHHHh-hhcCCcchhhhhhhhcCCcccchhhhccC
Q 023586 225 EIKNGRLAMFAMLGFFLQA-YVTGEGPVENLAKHLSDPFANNLLTVISG 272 (280)
Q Consensus 225 ELkNGRLAMlA~lG~~~Q~-~vtG~gp~~~l~~~~~dP~~~n~~~~~~~ 272 (280)
|||||||||||++|+++|+ .+||+||++||.+|++|||||||++++..
T Consensus 191 E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~~h~adP~~~n~~~~~~~ 239 (241)
T 2wsc_1 191 EIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 239 (241)
T ss_dssp HHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSSCSCCCSCC---------
T ss_pred hcccccHHHHHHHHHHHhhhhcCCCchHHHHHHHhcCccccceeeeecc
Confidence 9999999999999999999 58999999999999999999999998754
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.41 E-value=9e-14 Score=126.07 Aligned_cols=50 Identities=38% Similarity=0.630 Sum_probs=47.5
Q ss_pred CCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCC
Q 023586 101 EVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFG 151 (280)
Q Consensus 101 ~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G 151 (280)
.+|||+ ||||||++++++++++|++||||||+||+|++|+++||++++.|
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~G 221 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGKG 221 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 589999 99999999999999999999999999999999999999998765
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.40 E-value=2.5e-13 Score=122.64 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=47.0
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcC
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTG 247 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG 247 (280)
|...|||+ ||||||++|+++++++|..||||||+||+|++|+++|++++.
T Consensus 37 dG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~ 87 (232)
T 2bhw_A 37 TGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSR 87 (232)
T ss_dssp CSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhcc
Confidence 56789999 999999999999999999999999999999999999998764
No 9
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.36 E-value=1.1e-13 Score=127.72 Aligned_cols=55 Identities=22% Similarity=0.418 Sum_probs=45.3
Q ss_pred CCCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCC
Q 023586 98 LTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGA 152 (280)
Q Consensus 98 L~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~l~~~G~ 152 (280)
.|..+|||++||||||++++++++++|++||||||+||||++|+++||++++.|.
T Consensus 199 ~d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~ 253 (276)
T 2wsc_3 199 GEPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGP 253 (276)
T ss_dssp SSCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCC
T ss_pred ccccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCCh
Confidence 3456899999999999998888999999999999999999999999999987653
No 10
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.34 E-value=5e-14 Score=128.55 Aligned_cols=54 Identities=39% Similarity=0.677 Sum_probs=39.2
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcch
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~ 251 (280)
|..+|||+ ||||||++|+++++++|.+||||||+||+|++|+++||++++.|.+
T Consensus 67 ~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 67 TGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp --------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 45689999 9999999999999999999999999999999999999999998766
No 11
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.32 E-value=1.3e-13 Score=126.90 Aligned_cols=54 Identities=35% Similarity=0.618 Sum_probs=36.1
Q ss_pred cCCCCCCC-CCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhcCCcch
Q 023586 198 DKLHPGGP-FDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPV 251 (280)
Q Consensus 198 d~~~PGg~-FDPlgl~~dp~~~~~~k~kELkNGRLAMlA~lG~~~Q~~vtG~gp~ 251 (280)
|..+|||+ ||||||.+|+++++++|.+||||||+||+|++|+++|+++++.|.+
T Consensus 78 ~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 78 DGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp ----------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred cCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 45689999 9999999999999999999999999999999999999999876543
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.23 E-value=1.5e-12 Score=118.16 Aligned_cols=52 Identities=29% Similarity=0.645 Sum_probs=46.3
Q ss_pred CCCCCCCCCcccCCCCCChhhHHHHHHHHHhhhhhhhhhhhhhhhhhh-hhcCC
Q 023586 99 TGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEA-FNKFG 151 (280)
Q Consensus 99 ~G~~pGd~GFDPLGLs~~p~~l~~~ReaELkHGR~AMLA~vG~lv~E~-l~~~G 151 (280)
++.+||+ +|||+||++++++++++|.+||||||+||+|++|++++|. +++.|
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~g 216 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 216 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSC
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCc
Confidence 5578998 6999999999999999999999999999999999999994 55444
No 13
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=25.94 E-value=14 Score=30.36 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=0.0
Q ss_pred Cccccccc--Cccc--cccchhhcCCcccc
Q 023586 1 MASLAASS--TPAA--SIGAKEMLGNPLNV 26 (280)
Q Consensus 1 ~~~~~~~~--~~~~--~~~~~~~~g~~~~~ 26 (280)
|||||... +.+. .|+.|++-|+.+.+
T Consensus 1 maslat~~a~~p~~~kgl~gSs~~G~Kl~v 30 (144)
T 2wsc_H 1 MASLATLAAVQPTTLKGLAGSSIAGTKLHI 30 (144)
T ss_dssp ------------------------------
T ss_pred CcchhhhhhcCccccccccccccccceEee
Confidence 78866532 2222 36778888888754
Done!