Query 023587
Match_columns 280
No_of_seqs 242 out of 1522
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:23:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 84.3 0.41 1.4E-05 31.6 1.6 30 144-173 16-45 (56)
2 3j21_g 50S ribosomal protein L 84.2 0.21 7.1E-06 32.5 0.1 30 144-173 11-40 (51)
3 1z2q_A LM5-1; membrane protein 79.6 1.6 5.5E-05 31.1 3.4 28 144-171 18-47 (84)
4 1x4u_A Zinc finger, FYVE domai 78.6 1.9 6.5E-05 30.7 3.6 27 145-171 12-40 (84)
5 2yw8_A RUN and FYVE domain-con 74.8 2 6.8E-05 30.4 2.8 28 144-171 16-45 (82)
6 1y02_A CARP2, FYVE-ring finger 74.2 1.3 4.4E-05 34.0 1.7 24 148-171 20-45 (120)
7 1wfl_A Zinc finger protein 216 69.3 7.7 0.00026 27.0 4.6 41 146-187 24-69 (74)
8 1wfk_A Zinc finger, FYVE domai 65.9 4.2 0.00014 29.2 2.9 25 147-171 9-35 (88)
9 1vfy_A Phosphatidylinositol-3- 65.7 4.2 0.00014 28.0 2.7 24 148-171 12-37 (73)
10 1joc_A EEA1, early endosomal a 64.4 3.1 0.00011 31.9 2.1 25 147-171 69-95 (125)
11 1dvp_A HRS, hepatocyte growth 63.7 5.8 0.0002 33.3 3.8 25 147-171 161-187 (220)
12 3t7l_A Zinc finger FYVE domain 61.6 4.6 0.00016 29.1 2.4 25 147-171 20-46 (90)
13 3zyq_A Hepatocyte growth facto 60.1 5 0.00017 34.0 2.7 25 147-171 164-190 (226)
14 2cr8_A MDM4 protein; ZF-ranbp 42.4 9.8 0.00034 24.4 1.3 21 149-169 13-33 (53)
15 2dkt_A Ring finger and CHY zin 38.9 7.8 0.00027 30.6 0.5 39 147-185 83-125 (143)
16 1ffk_W Ribosomal protein L37AE 38.3 13 0.00046 25.7 1.6 32 142-173 22-57 (73)
17 2c6a_A Ubiquitin-protein ligas 36.7 13 0.00045 23.3 1.2 21 149-169 15-35 (46)
18 3u5e_m 60S ribosomal protein L 33.8 13 0.00043 28.3 0.9 25 146-170 92-118 (128)
19 3jyw_9 60S ribosomal protein L 31.9 15 0.00051 25.4 1.0 29 145-173 24-56 (72)
20 2jrp_A Putative cytoplasmic pr 29.7 26 0.00087 24.8 1.9 11 161-171 18-28 (81)
21 2elu_A Zinc finger protein 406 26.9 15 0.00052 21.2 0.2 8 162-169 10-17 (37)
22 1h7d_A Aminolevulinic acid syn 26.5 22 0.00074 22.7 0.9 14 172-185 5-18 (49)
23 3mpx_A FYVE, rhogef and PH dom 26.2 14 0.00048 33.8 0.0 25 147-171 375-401 (434)
24 3izc_m 60S ribosomal protein R 25.4 19 0.00066 26.1 0.6 29 145-173 34-66 (92)
25 2jne_A Hypothetical protein YF 24.3 28 0.00097 25.5 1.3 31 148-179 33-65 (101)
26 1wfp_A Zinc finger (AN1-like) 24.0 1.3E+02 0.0043 20.8 4.6 42 146-188 24-70 (74)
27 2vrw_B P95VAV, VAV1, proto-onc 23.6 40 0.0014 30.5 2.5 27 146-172 356-385 (406)
28 1wil_A KIAA1045 protein; ring 22.5 94 0.0032 22.1 3.7 26 146-171 14-39 (89)
29 3gj3_B Nuclear pore complex pr 22.5 37 0.0013 19.6 1.3 19 150-168 10-28 (33)
30 3j21_i 50S ribosomal protein L 21.6 18 0.00062 25.7 -0.2 29 145-173 33-65 (83)
31 3iz5_m 60S ribosomal protein L 20.7 23 0.0008 25.6 0.3 29 145-173 34-66 (92)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=84.33 E-value=0.41 Score=31.60 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCceecc
Q 023587 144 SELGVDPDNENSLSRKRVRYCKICKAHVEG 173 (280)
Q Consensus 144 ~~~~~~C~~C~~~kP~RS~HC~~C~~CV~r 173 (280)
......|..|..+-|+|+.-|+.|+.--+|
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HhchhhhccccCcCCcccccccCCCCCCCC
Confidence 345678999999999999999999865444
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=84.15 E-value=0.21 Score=32.53 Aligned_cols=30 Identities=7% Similarity=-0.121 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCCCCCcccccccCceecc
Q 023587 144 SELGVDPDNENSLSRKRVRYCKICKAHVEG 173 (280)
Q Consensus 144 ~~~~~~C~~C~~~kP~RS~HC~~C~~CV~r 173 (280)
....+.|+.|..+.|+++..|+.||.--+|
T Consensus 11 ~~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 11 IFKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred HhCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 345578999999999999999999875443
No 3
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=79.57 E-value=1.6 Score=31.10 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=20.0
Q ss_pred CCCCCCCCCCCCC--CCCCcccccccCcee
Q 023587 144 SELGVDPDNENSL--SRKRVRYCKICKAHV 171 (280)
Q Consensus 144 ~~~~~~C~~C~~~--kP~RS~HC~~C~~CV 171 (280)
+.....|..|... --.|-|||+.|++-+
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEE
Confidence 3445678888753 346889999998754
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.58 E-value=1.9 Score=30.67 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCC--CCCCcccccccCcee
Q 023587 145 ELGVDPDNENSL--SRKRVRYCKICKAHV 171 (280)
Q Consensus 145 ~~~~~C~~C~~~--kP~RS~HC~~C~~CV 171 (280)
.....|..|... --.|-|||+.||+-+
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEE
Confidence 344568888653 457899999998744
No 5
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=74.84 E-value=2 Score=30.43 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCC--CCCCcccccccCcee
Q 023587 144 SELGVDPDNENSL--SRKRVRYCKICKAHV 171 (280)
Q Consensus 144 ~~~~~~C~~C~~~--kP~RS~HC~~C~~CV 171 (280)
+.....|..|... --.|-|||+.||+-+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEE
Confidence 3344568888753 356889999998754
No 6
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=74.19 E-value=1.3 Score=34.03 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=17.9
Q ss_pred CCCCCCCC--CCCCCcccccccCcee
Q 023587 148 VDPDNENS--LSRKRVRYCKICKAHV 171 (280)
Q Consensus 148 ~~C~~C~~--~kP~RS~HC~~C~~CV 171 (280)
..|..|.. .-..|-|||+.||+.+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred CcccCcCCccccccccccCCCCCCee
Confidence 46888865 2456899999998744
No 7
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=69.29 E-value=7.7 Score=27.00 Aligned_cols=41 Identities=15% Similarity=0.028 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCCCCcccccccCc-----eecccccccccccccccc
Q 023587 146 LGVDPDNENSLSRKRVRYCKICKA-----HVEGFDHHCPAFGNCIGQ 187 (280)
Q Consensus 146 ~~~~C~~C~~~kP~RS~HC~~C~~-----CV~rfDHHCpWl~nCIG~ 187 (280)
..+.|..|+.....-...|+ |+. --.-=||.|++-+.=.|.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~gr 69 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEAS 69 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTSS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhch
Confidence 35679999887544457777 654 223349999987665543
No 8
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=65.90 E-value=4.2 Score=29.23 Aligned_cols=25 Identities=16% Similarity=0.001 Sum_probs=18.3
Q ss_pred CCCCCCCCCC--CCCCcccccccCcee
Q 023587 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (280)
Q Consensus 147 ~~~C~~C~~~--kP~RS~HC~~C~~CV 171 (280)
...|..|... --.|-|||+.||+-+
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEE
Confidence 3568888753 457899999998744
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=65.67 E-value=4.2 Score=28.01 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=17.6
Q ss_pred CCCCCCCCC--CCCCcccccccCcee
Q 023587 148 VDPDNENSL--SRKRVRYCKICKAHV 171 (280)
Q Consensus 148 ~~C~~C~~~--kP~RS~HC~~C~~CV 171 (280)
..|..|... --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 358888753 346889999998754
No 10
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.40 E-value=3.1 Score=31.94 Aligned_cols=25 Identities=12% Similarity=0.037 Sum_probs=18.3
Q ss_pred CCCCCCCCCC--CCCCcccccccCcee
Q 023587 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (280)
Q Consensus 147 ~~~C~~C~~~--kP~RS~HC~~C~~CV 171 (280)
...|..|... --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 3468888653 456899999998754
No 11
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.68 E-value=5.8 Score=33.28 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=18.5
Q ss_pred CCCCCCCCCC--CCCCcccccccCcee
Q 023587 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (280)
Q Consensus 147 ~~~C~~C~~~--kP~RS~HC~~C~~CV 171 (280)
...|..|... --.|-|||+.||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3578888653 346889999998755
No 12
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=61.58 E-value=4.6 Score=29.09 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=17.7
Q ss_pred CCCCCCCCCC--CCCCcccccccCcee
Q 023587 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (280)
Q Consensus 147 ~~~C~~C~~~--kP~RS~HC~~C~~CV 171 (280)
...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 3558888642 345889999998754
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=60.14 E-value=5 Score=33.97 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=17.8
Q ss_pred CCCCCCCCCC--CCCCcccccccCcee
Q 023587 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (280)
Q Consensus 147 ~~~C~~C~~~--kP~RS~HC~~C~~CV 171 (280)
...|..|... --.|-|||+.||+.+
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEe
Confidence 3568888642 345789999998754
No 14
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=42.40 E-value=9.8 Score=24.44 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCcccccccCc
Q 023587 149 DPDNENSLSRKRVRYCKICKA 169 (280)
Q Consensus 149 ~C~~C~~~kP~RS~HC~~C~~ 169 (280)
.|.+|+..-||--+||..|-+
T Consensus 13 kC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 13 QCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp ECSSSCCEECSSCCBCTTTCC
T ss_pred ecccccccCCCccchhHHHHH
Confidence 477777777777777776654
No 15
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=38.86 E-value=7.8 Score=30.55 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCC-CcccccccCceecc---cccccccccccc
Q 023587 147 GVDPDNENSLSRK-RVRYCKICKAHVEG---FDHHCPAFGNCI 185 (280)
Q Consensus 147 ~~~C~~C~~~kP~-RS~HC~~C~~CV~r---fDHHCpWl~nCI 185 (280)
.-||..|+.+.+. ..-||..||-|... -=-||.--|-|+
T Consensus 83 ~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~ 125 (143)
T 2dkt_A 83 EYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCL 125 (143)
T ss_dssp SEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEE
T ss_pred eeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeee
Confidence 4578888776433 34566666666553 112454444443
No 16
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=38.33 E-value=13 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=23.6
Q ss_pred cCCCCCCCCCCCCCCCCCCc----ccccccCceecc
Q 023587 142 EGSELGVDPDNENSLSRKRV----RYCKICKAHVEG 173 (280)
Q Consensus 142 ~~~~~~~~C~~C~~~kP~RS----~HC~~C~~CV~r 173 (280)
..+.....|+.|...+-.|. .+|+.|++-++.
T Consensus 22 ~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 57 (73)
T 1ffk_W 22 IKHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAG 57 (73)
T ss_pred HhcccCccCCCCCCceeEEEEeEEEECCCCCcEEEC
Confidence 34456678999987666664 789999987764
No 17
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=36.70 E-value=13 Score=23.33 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCcccccccCc
Q 023587 149 DPDNENSLSRKRVRYCKICKA 169 (280)
Q Consensus 149 ~C~~C~~~kP~RS~HC~~C~~ 169 (280)
.|.+|+..-||--+||..|-+
T Consensus 15 kC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 15 KCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp ECTTTCCEECSSCSSCTTTCC
T ss_pred ecccccccCCCccchhhHHHh
Confidence 488888888888888877754
No 18
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=33.78 E-value=13 Score=28.26 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCCCCcccccc--cCce
Q 023587 146 LGVDPDNENSLSRKRVRYCKI--CKAH 170 (280)
Q Consensus 146 ~~~~C~~C~~~kP~RS~HC~~--C~~C 170 (280)
....|..|..+-|+|+..|+. |+..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 467899999999999999994 8764
No 19
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=31.91 E-value=15 Score=25.41 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCCCCCCc----ccccccCceecc
Q 023587 145 ELGVDPDNENSLSRKRV----RYCKICKAHVEG 173 (280)
Q Consensus 145 ~~~~~C~~C~~~kP~RS----~HC~~C~~CV~r 173 (280)
.....|+.|...+-.|. .||+.|++=++.
T Consensus 24 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 24 HARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp HSCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCC
T ss_pred ccCccCCCCCCceeEecCCCeEECCCCCCEEeC
Confidence 35577999987666663 589999876653
No 20
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.68 E-value=26 Score=24.80 Aligned_cols=11 Identities=18% Similarity=0.622 Sum_probs=4.7
Q ss_pred cccccccCcee
Q 023587 161 VRYCKICKAHV 171 (280)
Q Consensus 161 S~HC~~C~~CV 171 (280)
..||..|++-+
T Consensus 18 ~~~C~~C~~~~ 28 (81)
T 2jrp_A 18 TAHCETCAKDF 28 (81)
T ss_dssp EEECTTTCCEE
T ss_pred ceECccccccC
Confidence 33444444433
No 21
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=26.86 E-value=15 Score=21.21 Aligned_cols=8 Identities=38% Similarity=1.198 Sum_probs=6.6
Q ss_pred ccccccCc
Q 023587 162 RYCKICKA 169 (280)
Q Consensus 162 ~HC~~C~~ 169 (280)
.||+.|++
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 58999986
No 22
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=26.53 E-value=22 Score=22.69 Aligned_cols=14 Identities=14% Similarity=0.301 Sum_probs=11.2
Q ss_pred cccccccccccccc
Q 023587 172 EGFDHHCPAFGNCI 185 (280)
Q Consensus 172 ~rfDHHCpWl~nCI 185 (280)
+.++|+||+++.+=
T Consensus 5 a~~l~~CPFL~R~p 18 (49)
T 1h7d_A 5 AMLLRSCPVLSQGP 18 (49)
T ss_dssp SCSCCSCCCCSSCS
T ss_pred hhhhccCCchhcCC
Confidence 45789999998764
No 23
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=26.22 E-value=14 Score=33.77 Aligned_cols=25 Identities=20% Similarity=0.078 Sum_probs=0.0
Q ss_pred CCCCCCCCCC--CCCCcccccccCcee
Q 023587 147 GVDPDNENSL--SRKRVRYCKICKAHV 171 (280)
Q Consensus 147 ~~~C~~C~~~--kP~RS~HC~~C~~CV 171 (280)
...|..|... --.|-|||+.||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIV 401 (434)
T ss_dssp ---------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEe
Confidence 4568888642 345789999998743
No 24
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=25.42 E-value=19 Score=26.07 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=22.2
Q ss_pred CCCCCCCCCCCCCCCCc----ccccccCceecc
Q 023587 145 ELGVDPDNENSLSRKRV----RYCKICKAHVEG 173 (280)
Q Consensus 145 ~~~~~C~~C~~~kP~RS----~HC~~C~~CV~r 173 (280)
.....|+.|...+-.|. .||+.|++=++.
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AG 66 (92)
T 3izc_m 34 HARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAG 66 (92)
T ss_dssp HSCCCCSSSCSSCCEEEETTEEECTTTCCEEEC
T ss_pred hcCCcCCCCCCceeeecccceEEcCCCCCEEeC
Confidence 35678999987776664 599999987764
No 25
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=24.33 E-value=28 Score=25.46 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=19.7
Q ss_pred CCCCCCCCCC--CCCcccccccCceecccccccc
Q 023587 148 VDPDNENSLS--RKRVRYCKICKAHVEGFDHHCP 179 (280)
Q Consensus 148 ~~C~~C~~~k--P~RS~HC~~C~~CV~rfDHHCp 179 (280)
..|+.|+..- -.+..||..|++-+.+ --+||
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~-~a~CP 65 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEM-KALCP 65 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEE-EEECT
T ss_pred ccCccCCCcceecCCEEECccccchhhc-cccCc
Confidence 7799998532 2346679998885433 33455
No 26
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.05 E-value=1.3e+02 Score=20.79 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCCCcccccccC-----ceeccccccccccccccccc
Q 023587 146 LGVDPDNENSLSRKRVRYCKICK-----AHVEGFDHHCPAFGNCIGQN 188 (280)
Q Consensus 146 ~~~~C~~C~~~kP~RS~HC~~C~-----~CV~rfDHHCpWl~nCIG~~ 188 (280)
..+.|..|+.....-.-.|+ |+ +--..-||.|++-+.-.|..
T Consensus 24 ~~~RC~~C~kkvgL~~f~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~gr~ 70 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCR-CGSTFCGTHRYPESHECQFDFKGVASG 70 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECT-TSCEECTTTCSTTTSCCCSCTTSCCCC
T ss_pred cCccchhhcCcccccceEec-cCCEeccccCCCcCCCCcCchhHHhHH
Confidence 44679989866544456663 44 33344499999887766653
No 27
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=23.63 E-value=40 Score=30.47 Aligned_cols=27 Identities=15% Similarity=0.098 Sum_probs=19.4
Q ss_pred CCCCCCCCCCC---CCCCcccccccCceec
Q 023587 146 LGVDPDNENSL---SRKRVRYCKICKAHVE 172 (280)
Q Consensus 146 ~~~~C~~C~~~---kP~RS~HC~~C~~CV~ 172 (280)
...+|..|... --.|-+||+.|+..|-
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAH 385 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccc
Confidence 45789999753 3468899998876443
No 28
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.52 E-value=94 Score=22.12 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCCCCcccccccCcee
Q 023587 146 LGVDPDNENSLSRKRVRYCKICKAHV 171 (280)
Q Consensus 146 ~~~~C~~C~~~kP~RS~HC~~C~~CV 171 (280)
....|..|..+.-.----||+|+|+-
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~Rvf 39 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred CCcccCccccccccceeccccccccc
Confidence 34679999988866666799999853
No 29
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=22.46 E-value=37 Score=19.62 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCcccccccC
Q 023587 150 PDNENSLSRKRVRYCKICK 168 (280)
Q Consensus 150 C~~C~~~kP~RS~HC~~C~ 168 (280)
|..|..+-++.+.+|..|+
T Consensus 10 C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 10 CDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp CTTTCCEECTTCSBCTTTC
T ss_pred CCcccCCCccccCEEcccC
Confidence 6777776666666776664
No 30
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.62 E-value=18 Score=25.70 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCCCCCCCCCCCCCCCc----ccccccCceecc
Q 023587 145 ELGVDPDNENSLSRKRV----RYCKICKAHVEG 173 (280)
Q Consensus 145 ~~~~~C~~C~~~kP~RS----~HC~~C~~CV~r 173 (280)
.....|+.|...+-.|. .||+.|++=++.
T Consensus 33 ~~ky~CpfCGk~~vkR~a~GIW~C~kCg~~~AG 65 (83)
T 3j21_i 33 RQKHTCPVCGRKAVKRISTGIWQCQKCGATFAG 65 (83)
T ss_dssp HSCBCCSSSCSSCEEEEETTEEEETTTCCEEEC
T ss_pred hcccCCCCCCCceeEecCcCeEEcCCCCCEEeC
Confidence 34677999987776663 599999987764
No 31
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=20.70 E-value=23 Score=25.63 Aligned_cols=29 Identities=21% Similarity=0.130 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCCCCCc----ccccccCceecc
Q 023587 145 ELGVDPDNENSLSRKRV----RYCKICKAHVEG 173 (280)
Q Consensus 145 ~~~~~C~~C~~~kP~RS----~HC~~C~~CV~r 173 (280)
.....|+.|...+-.|. .||+.|++=++.
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~AG 66 (92)
T 3iz5_m 34 HSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAG 66 (92)
T ss_dssp HSCBCCTTTCSSCBEEEETTEEECSSSCCEEEC
T ss_pred hccccCcccCCCeeEecCcceEEcCCCCCEEeC
Confidence 34567999987776663 699999987764
Done!