Query 023588
Match_columns 280
No_of_seqs 139 out of 700
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 09:24:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 3.2E-16 1.1E-20 116.9 4.2 40 207-247 4-43 (63)
2 2vut_I AREA, nitrogen regulato 99.6 4.1E-16 1.4E-20 108.5 2.3 37 211-248 2-38 (43)
3 1gnf_A Transcription factor GA 99.6 9.9E-16 3.4E-20 108.0 3.6 39 209-248 3-41 (46)
4 4gat_A Nitrogen regulatory pro 99.5 2.4E-15 8.2E-20 112.9 2.5 39 208-247 7-45 (66)
5 2kae_A GATA-type transcription 99.5 4.4E-15 1.5E-19 113.0 2.2 43 205-247 3-45 (71)
6 4hc9_A Trans-acting T-cell-spe 99.3 5.3E-13 1.8E-17 108.8 3.5 40 207-247 56-95 (115)
7 4hc9_A Trans-acting T-cell-spe 99.1 1.4E-11 4.8E-16 100.4 3.5 37 209-246 4-40 (115)
8 1dl6_A Transcription factor II 72.8 1.4 4.8E-05 31.5 1.5 43 209-254 10-54 (58)
9 1pft_A TFIIB, PFTFIIBN; N-term 64.7 1.2 4.1E-05 30.2 -0.3 41 210-253 5-47 (50)
10 2b0o_E UPLC1; arfgap, structur 52.1 5.3 0.00018 34.8 1.6 33 209-243 41-73 (301)
11 1qyp_A RNA polymerase II; tran 51.6 1.4 4.8E-05 30.8 -1.8 35 210-244 15-55 (57)
12 3cw2_K Translation initiation 50.6 5.2 0.00018 33.4 1.2 32 210-242 103-134 (139)
13 3k7a_M Transcription initiatio 46.0 7.4 0.00025 35.6 1.6 34 210-245 21-55 (345)
14 2d74_B Translation initiation 44.3 5.5 0.00019 33.6 0.4 31 211-242 105-135 (148)
15 2iqj_A Stromal membrane-associ 43.6 6.1 0.00021 32.6 0.6 34 209-244 26-59 (134)
16 3dwd_A ADP-ribosylation factor 41.7 10 0.00034 32.2 1.6 34 209-244 37-70 (147)
17 4g5s_E PINS homolog, G-protein 41.6 8 0.00027 24.2 0.7 10 12-21 2-11 (26)
18 2crw_A ARF GAP 3, ADP-ribosyla 40.8 12 0.0004 31.6 1.9 42 209-252 28-70 (149)
19 1nee_A EIF-2-beta, probable tr 38.7 5.4 0.00018 33.2 -0.5 30 211-241 103-132 (138)
20 2yrk_A Zinc finger homeobox pr 35.8 6.1 0.00021 28.8 -0.5 19 226-244 7-25 (55)
21 2owa_A Arfgap-like finger doma 35.6 12 0.00041 31.0 1.2 34 209-244 35-68 (138)
22 2crr_A Stromal membrane-associ 34.3 27 0.00093 28.9 3.1 43 209-253 28-71 (141)
23 3po3_S Transcription elongatio 33.9 7.6 0.00026 33.1 -0.3 36 208-243 135-176 (178)
24 2p57_A GTPase-activating prote 33.7 7.4 0.00025 32.8 -0.4 42 209-252 36-78 (144)
25 3cng_A Nudix hydrolase; struct 33.0 9.4 0.00032 30.9 0.1 30 210-239 3-32 (189)
26 1pqv_S STP-alpha, transcriptio 32.9 8.1 0.00028 35.4 -0.3 34 210-243 268-307 (309)
27 1k81_A EIF-2-beta, probable tr 30.5 2.7 9.2E-05 27.6 -2.9 29 212-242 2-31 (36)
28 2olm_A Nucleoporin-like protei 30.3 13 0.00046 30.7 0.6 34 209-244 24-57 (140)
29 1tfi_A Transcriptional elongat 28.0 6.8 0.00023 27.3 -1.4 36 208-243 7-48 (50)
30 2yrc_A Protein transport prote 26.3 11 0.00038 27.1 -0.5 44 206-252 5-50 (59)
31 3jue_A Arfgap with coiled-coil 25.9 25 0.00085 32.1 1.6 34 208-243 43-76 (368)
32 3sub_A ADP-ribosylation factor 25.7 18 0.0006 31.2 0.5 34 209-244 21-54 (163)
33 2han_B Ecdysone receptor; tran 22.8 35 0.0012 27.4 1.7 32 208-244 6-37 (119)
34 2g2k_A EIF-5, eukaryotic trans 22.3 8.8 0.0003 33.1 -2.0 34 211-244 97-131 (170)
35 2zjr_Z 50S ribosomal protein L 21.7 18 0.00061 26.2 -0.2 24 208-240 28-51 (60)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.60 E-value=3.2e-16 Score=116.88 Aligned_cols=40 Identities=30% Similarity=0.805 Sum_probs=36.5
Q ss_pred CCCCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588 207 TDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL 247 (280)
Q Consensus 207 ~~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~ 247 (280)
......|.||+++.||+||+||+|. +|||||||+|++++.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC
Confidence 4566789999999999999999997 999999999999765
No 2
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.58 E-value=4.1e-16 Score=108.49 Aligned_cols=37 Identities=41% Similarity=0.913 Sum_probs=34.0
Q ss_pred CccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCCC
Q 023588 211 RKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLV 248 (280)
Q Consensus 211 ~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~~ 248 (280)
+.|++|+++.||+||+||+|. +|||||||+|++++..
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence 579999999999999999996 9999999999997653
No 3
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.57 E-value=9.9e-16 Score=107.96 Aligned_cols=39 Identities=36% Similarity=0.823 Sum_probs=35.2
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCCC
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLV 248 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~~ 248 (280)
....|.+|++++||+||+||+|. +|||||||+|++++..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence 45689999999999999999996 9999999999997653
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.52 E-value=2.4e-15 Score=112.91 Aligned_cols=39 Identities=38% Similarity=0.911 Sum_probs=35.6
Q ss_pred CCCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588 208 DTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL 247 (280)
Q Consensus 208 ~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~ 247 (280)
+....|+||++++||+||+||+|. +|||||||+|++++.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence 567899999999999999999996 999999999998655
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.50 E-value=4.4e-15 Score=113.01 Aligned_cols=43 Identities=28% Similarity=0.487 Sum_probs=32.9
Q ss_pred CCCCCCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588 205 QQTDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL 247 (280)
Q Consensus 205 ~~~~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~ 247 (280)
.+......|+||+++.||+||+|+.+..+|||||||+|++++.
T Consensus 3 ~~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 3 HMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNK 45 (71)
T ss_dssp -----CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHHS
T ss_pred CCCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhCC
Confidence 3456678999999999999999654445999999999999654
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.32 E-value=5.3e-13 Score=108.80 Aligned_cols=40 Identities=30% Similarity=0.815 Sum_probs=36.4
Q ss_pred CCCCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC
Q 023588 207 TDTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL 247 (280)
Q Consensus 207 ~~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~ 247 (280)
......|+||+++.||+||+||+| ++|||||||||++++.
T Consensus 56 ~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~ 95 (115)
T 4hc9_A 56 RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNI 95 (115)
T ss_dssp CCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred ccccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCC
Confidence 455689999999999999999999 8999999999999655
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.15 E-value=1.4e-11 Score=100.37 Aligned_cols=37 Identities=38% Similarity=0.891 Sum_probs=32.5
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCC
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGR 246 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r 246 (280)
..+.|.||+++.||+||+|++| .+|||||||+|+..+
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G 40 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNG 40 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcc
Confidence 4578999999999999999999 799999999998743
No 8
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=72.75 E-value=1.4 Score=31.45 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=29.6
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCC--CCCCCCC
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRL--VPEYRPA 254 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~--~p~yrpa 254 (280)
....|..|+.+. .-.....| .+.|..||+-+....+ -|+||.-
T Consensus 10 ~~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~F 54 (58)
T 1dl6_A 10 PRVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRTF 54 (58)
T ss_dssp SCCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCCS
T ss_pred ccccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCccccc
Confidence 344799998754 33344455 7999999999987544 3777754
No 9
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=64.71 E-value=1.2 Score=30.20 Aligned_cols=41 Identities=27% Similarity=0.583 Sum_probs=26.3
Q ss_pred CCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhhCCCC--CCCCC
Q 023588 210 PRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRSGRLV--PEYRP 253 (280)
Q Consensus 210 ~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~~--p~yrp 253 (280)
...|-+|+.+ ++-.....| ...|..||+-|....+- |+||.
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCcccc
Confidence 4579999773 232222234 78999999988765543 66664
No 10
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=52.11 E-value=5.3 Score=34.79 Aligned_cols=33 Identities=27% Similarity=0.674 Sum_probs=26.9
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHh
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYR 243 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~k 243 (280)
....|+.|+... |.|-.-.-| ..+|-.|----+
T Consensus 41 ~n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr 73 (301)
T 2b0o_E 41 GNSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHR 73 (301)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHH
T ss_pred CCCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHH
Confidence 466899999965 999999999 899999954333
No 11
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=51.56 E-value=1.4 Score=30.78 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=26.2
Q ss_pred CCccCcCCCCC----CCCcCCCCCCCh--hHhHHhhhHHhh
Q 023588 210 PRKCMHCEVAE----TPQWREGPMGPK--TLCNACGVRYRS 244 (280)
Q Consensus 210 ~~~C~~Cgvt~----TP~WR~GP~G~~--tLCNACGL~~kk 244 (280)
...|.+||-.. +-|||...++.. ..|..||-+|+-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 45799999854 458898877733 589999988763
No 12
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=50.65 E-value=5.2 Score=33.37 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=21.1
Q ss_pred CCccCcCCCCCCCCcCCCCCCChhHhHHhhhHH
Q 023588 210 PRKCMHCEVAETPQWREGPMGPKTLCNACGVRY 242 (280)
Q Consensus 210 ~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~ 242 (280)
-..|..|+...|-+=+++-. --.-|+|||-.-
T Consensus 103 yVlC~~C~sPdT~l~k~~r~-~~l~C~ACGa~~ 134 (139)
T 3cw2_K 103 YVECSTCKSLDTILKKEKKS-WYIVCLACGAQT 134 (139)
T ss_dssp CSSCCSSSSSCCCSCSSCST-TTSSCCC-----
T ss_pred eeECCCCCCcCcEEEEeCCe-EEEEecCCCCCC
Confidence 36799999999999986522 246899999653
No 13
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=46.03 E-value=7.4 Score=35.63 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=20.2
Q ss_pred CCccCcCCCCCC-CCcCCCCCCChhHhHHhhhHHhhC
Q 023588 210 PRKCMHCEVAET-PQWREGPMGPKTLCNACGVRYRSG 245 (280)
Q Consensus 210 ~~~C~~Cgvt~T-P~WR~GP~G~~tLCNACGL~~kk~ 245 (280)
...|.+|+...+ -.. +-..| .++|..||+-+.-.
T Consensus 21 ~~~Cp~Cg~~~~~iv~-D~~~G-~~vC~~CG~Vl~e~ 55 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVE-RFSEG-DVVCALCGLVLSDK 55 (345)
T ss_dssp CCCCSTTCCSCCCCCC-CSSSC-SCCCSSSCCCCCCC
T ss_pred CCcCcCCCCCCCceEE-ECCCC-CEecCCCCeEcccc
Confidence 346888877632 223 23345 67888888766543
No 14
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=44.33 E-value=5.5 Score=33.60 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=23.7
Q ss_pred CccCcCCCCCCCCcCCCCCCChhHhHHhhhHH
Q 023588 211 RKCMHCEVAETPQWREGPMGPKTLCNACGVRY 242 (280)
Q Consensus 211 ~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~ 242 (280)
..|..|+...|-+=+++- ---.-|+|||-..
T Consensus 105 VlC~~C~sPdT~L~k~~r-~~~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDR-FHFLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSS-SBCCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCC-EEEEEecCCCCCc
Confidence 479999999999988642 2246899999653
No 15
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=43.55 E-value=6.1 Score=32.57 Aligned_cols=34 Identities=24% Similarity=0.633 Sum_probs=27.9
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhh
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRS 244 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk 244 (280)
.+..|++|+... |.|=.=..| -.+|-.|.--.+.
T Consensus 26 ~N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~ 59 (134)
T 2iqj_A 26 DNKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRN 59 (134)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhc
Confidence 467899999875 999888888 7899999766555
No 16
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=41.69 E-value=10 Score=32.17 Aligned_cols=34 Identities=29% Similarity=0.670 Sum_probs=28.5
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhh
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRS 244 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk 244 (280)
.++.|++|+... |.|-.=..| -.||-.|.-..+.
T Consensus 37 ~N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~ 70 (147)
T 3dwd_A 37 ENNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRG 70 (147)
T ss_dssp TTTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhc
Confidence 467899999875 999888888 8999999876665
No 17
>4g5s_E PINS homolog, G-protein-signaling modulator 2; galpha, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 3.62A {Mus musculus}
Probab=41.58 E-value=8 Score=24.24 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=8.3
Q ss_pred chhHHHHhhh
Q 023588 12 DEFFDDVVDT 21 (280)
Q Consensus 12 d~~fdd~~~~ 21 (280)
|+|||-||.+
T Consensus 2 d~ff~ml~kc 11 (26)
T 4g5s_E 2 EDFFDILVKC 11 (26)
T ss_dssp -CHHHHHHHH
T ss_pred hhHHHHHHHh
Confidence 7899999987
No 18
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.79 E-value=12 Score=31.62 Aligned_cols=42 Identities=31% Similarity=0.613 Sum_probs=31.3
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhh-CCCCCCCC
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRS-GRLVPEYR 252 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk-~r~~p~yr 252 (280)
.++.|++|+.. -|.|-.=..| -.+|-.|.-..+. |..+-..+
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~Vr 70 (149)
T 2crw_A 28 TNKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIR 70 (149)
T ss_dssp TTSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEE
T ss_pred CCCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeee
Confidence 46789999975 5999888888 8899999776666 43333333
No 19
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=38.70 E-value=5.4 Score=33.22 Aligned_cols=30 Identities=33% Similarity=0.721 Sum_probs=23.1
Q ss_pred CccCcCCCCCCCCcCCCCCCChhHhHHhhhH
Q 023588 211 RKCMHCEVAETPQWREGPMGPKTLCNACGVR 241 (280)
Q Consensus 211 ~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~ 241 (280)
..|..|+...|-+=+++-. --.-|+|||-.
T Consensus 103 VlC~~C~sPdT~l~k~~r~-~~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRI-SLLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTT-TEEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCe-EEEEccCCCCC
Confidence 4699999999999886422 24589999954
No 20
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=35.84 E-value=6.1 Score=28.83 Aligned_cols=19 Identities=42% Similarity=0.943 Sum_probs=16.1
Q ss_pred CCCCCChhHhHHhhhHHhh
Q 023588 226 EGPMGPKTLCNACGVRYRS 244 (280)
Q Consensus 226 ~GP~G~~tLCNACGL~~kk 244 (280)
.+|+||++-|.-||+.|-.
T Consensus 7 ~~~~~P~~eC~lC~vkYs~ 25 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSA 25 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCS
T ss_pred CCCCCCCccccccCccccc
Confidence 5788988999999998864
No 21
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=35.55 E-value=12 Score=31.04 Aligned_cols=34 Identities=26% Similarity=0.686 Sum_probs=28.5
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhh
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRS 244 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk 244 (280)
.+..|++|+... |.|=.=..| -.+|-.|.-..+.
T Consensus 35 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~ 68 (138)
T 2owa_A 35 ENRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRK 68 (138)
T ss_dssp GGGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHT
T ss_pred CCCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhC
Confidence 456899999875 999888888 8899999877766
No 22
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.28 E-value=27 Score=28.89 Aligned_cols=43 Identities=23% Similarity=0.597 Sum_probs=30.9
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhh-CCCCCCCCC
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRS-GRLVPEYRP 253 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk-~r~~p~yrp 253 (280)
.+..|++|+.. -|.|=.=..| -.||-.|.--.+. |..+-.++.
T Consensus 28 ~N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkS 71 (141)
T 2crr_A 28 DNKYCADCEAK-GPRWASWNIG-VFICIRCAGIHRNLGVHISRVKS 71 (141)
T ss_dssp GGSSCSSSCCS-SCCSEETTTT-EECCHHHHHHHHHHCTTTCCCBC
T ss_pred cCCcCCCCCCC-CCCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeE
Confidence 45689999986 4999888888 7899999766555 433333333
No 23
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=33.91 E-value=7.6 Score=33.13 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=24.7
Q ss_pred CCCCccCcCCCCCC---CCc-CCCCCCCh--hHhHHhhhHHh
Q 023588 208 DTPRKCMHCEVAET---PQW-REGPMGPK--TLCNACGVRYR 243 (280)
Q Consensus 208 ~~~~~C~~Cgvt~T---P~W-R~GP~G~~--tLCNACGL~~k 243 (280)
+....|..|+-... ..+ |.+.+|-. ..|..||-+|+
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 34568999997763 333 65655533 48999999885
No 24
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=33.74 E-value=7.4 Score=32.75 Aligned_cols=42 Identities=31% Similarity=0.612 Sum_probs=31.1
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhh-CCCCCCCC
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRS-GRLVPEYR 252 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk-~r~~p~yr 252 (280)
.++.|++|+... |.|=.=..| -.+|-.|.-..+. |..+-.++
T Consensus 36 ~N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~Vr 78 (144)
T 2p57_A 36 TNKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSLGVHLSFIR 78 (144)
T ss_dssp GGGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHHCTTTCCEE
T ss_pred CCCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCCCCCCCeee
Confidence 456899999865 999887778 7899999877766 43333333
No 25
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=33.00 E-value=9.4 Score=30.92 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=25.8
Q ss_pred CCccCcCCCCCCCCcCCCCCCChhHhHHhh
Q 023588 210 PRKCMHCEVAETPQWREGPMGPKTLCNACG 239 (280)
Q Consensus 210 ~~~C~~Cgvt~TP~WR~GP~G~~tLCNACG 239 (280)
.+.|..||...+.....|..+....|-.||
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 468999999998877778777788999999
No 26
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=32.88 E-value=8.1 Score=35.39 Aligned_cols=34 Identities=24% Similarity=0.572 Sum_probs=25.3
Q ss_pred CCccCcCCCCCCCCc----CCCCCCCh--hHhHHhhhHHh
Q 023588 210 PRKCMHCEVAETPQW----REGPMGPK--TLCNACGVRYR 243 (280)
Q Consensus 210 ~~~C~~Cgvt~TP~W----R~GP~G~~--tLCNACGL~~k 243 (280)
...|..|+-...-.| |.+.+|-. +.|..||-+|+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 458999998775444 66766633 48999999886
No 27
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=30.46 E-value=2.7 Score=27.56 Aligned_cols=29 Identities=31% Similarity=0.559 Sum_probs=20.9
Q ss_pred ccCcCCCCCCCCcCCCCCCC-hhHhHHhhhHH
Q 023588 212 KCMHCEVAETPQWREGPMGP-KTLCNACGVRY 242 (280)
Q Consensus 212 ~C~~Cgvt~TP~WR~GP~G~-~tLCNACGL~~ 242 (280)
.|..|+..+|-+=+++ +. -.-|+|||-..
T Consensus 2 lC~~C~~peT~l~~~~--~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEG--RVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEET--TEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeC--CcEEEEhhcCCCcc
Confidence 4899999999887753 22 23599999653
No 28
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=30.33 E-value=13 Score=30.70 Aligned_cols=34 Identities=26% Similarity=0.715 Sum_probs=27.6
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhh
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRS 244 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk 244 (280)
.+..|++|+.. -|.|=.=..| -.||-.|.--.+.
T Consensus 24 ~N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 24 HNRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred CCCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 45789999986 5999888888 7899999766554
No 29
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=27.96 E-value=6.8 Score=27.25 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=25.3
Q ss_pred CCCCccCcCCCCCCC----CcCCCCCCCh--hHhHHhhhHHh
Q 023588 208 DTPRKCMHCEVAETP----QWREGPMGPK--TLCNACGVRYR 243 (280)
Q Consensus 208 ~~~~~C~~Cgvt~TP----~WR~GP~G~~--tLCNACGL~~k 243 (280)
.....|..|+-.+.- |=|.+.++-. ..|..||-+|+
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 345679999987743 3377777743 48989998775
No 30
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=26.32 E-value=11 Score=27.10 Aligned_cols=44 Identities=23% Similarity=0.438 Sum_probs=34.3
Q ss_pred CCCCCCccCc--CCCCCCCCcCCCCCCChhHhHHhhhHHhhCCCCCCCC
Q 023588 206 QTDTPRKCMH--CEVAETPQWREGPMGPKTLCNACGVRYRSGRLVPEYR 252 (280)
Q Consensus 206 ~~~~~~~C~~--Cgvt~TP~WR~GP~G~~tLCNACGL~~kk~r~~p~yr 252 (280)
......+|.. |++-.-|.++-...|....||-|+.+- .+.++|.
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N---~~P~~Y~ 50 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRN---QFPPSYA 50 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEE---ECCSCCS
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcC---CCCHHHh
Confidence 3456789998 999999999888778889999998653 3445555
No 31
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=25.91 E-value=25 Score=32.09 Aligned_cols=34 Identities=32% Similarity=0.731 Sum_probs=27.1
Q ss_pred CCCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHh
Q 023588 208 DTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYR 243 (280)
Q Consensus 208 ~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~k 243 (280)
..+..|++|+.. -|.|=.=..| -.+|-.|.--.+
T Consensus 43 ~~n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~hr 76 (368)
T 3jue_A 43 DGNAQCCDCREP-APEWASINLG-VTLCIQCSGIHR 76 (368)
T ss_dssp TTTTBCTTTCCB-SCCEEETTTT-EEECHHHHHHHH
T ss_pred CCcCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHHh
Confidence 356799999986 5999888888 899999964333
No 32
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=25.69 E-value=18 Score=31.19 Aligned_cols=34 Identities=32% Similarity=0.729 Sum_probs=27.5
Q ss_pred CCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhh
Q 023588 209 TPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRS 244 (280)
Q Consensus 209 ~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk 244 (280)
..+.|++|+.. -|.|-.=.-| -.||-.|.-..+.
T Consensus 21 ~N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~ 54 (163)
T 3sub_A 21 SNNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRS 54 (163)
T ss_dssp GGGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred CCCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcC
Confidence 35689999986 5999888888 8999999665555
No 33
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=22.77 E-value=35 Score=27.41 Aligned_cols=32 Identities=16% Similarity=0.370 Sum_probs=23.5
Q ss_pred CCCCccCcCCCCCCCCcCCCCCCChhHhHHhhhHHhh
Q 023588 208 DTPRKCMHCEVAETPQWREGPMGPKTLCNACGVRYRS 244 (280)
Q Consensus 208 ~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL~~kk 244 (280)
.....|..|+...+-.. .| ...|+||..+|++
T Consensus 6 ~~~~~C~VCg~~a~g~h----yG-v~sC~aCk~FFRR 37 (119)
T 2han_B 6 VQEELCLVCGDRASGYH----YN-ALTCEGCKGFFRR 37 (119)
T ss_dssp CCSCBCTTTCSBCCEEE----TT-EEECHHHHHHHHH
T ss_pred CCCCcCeEeCCcCCcce----EC-chhHHhhHHhhhh
Confidence 44578999997654321 34 5789999999997
No 34
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=22.34 E-value=8.8 Score=33.14 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=24.1
Q ss_pred CccCcCCCCCCCCcCCCCCC-ChhHhHHhhhHHhh
Q 023588 211 RKCMHCEVAETPQWREGPMG-PKTLCNACGVRYRS 244 (280)
Q Consensus 211 ~~C~~Cgvt~TP~WR~GP~G-~~tLCNACGL~~kk 244 (280)
..|..|+...|-+=+..-.+ --.-|+|||-..-.
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~V 131 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGML 131 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCCS
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCcccc
Confidence 46999999999988832222 13579999976543
No 35
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=21.68 E-value=18 Score=26.17 Aligned_cols=24 Identities=21% Similarity=0.663 Sum_probs=18.0
Q ss_pred CCCCccCcCCCCCCCCcCCCCCCChhHhHHhhh
Q 023588 208 DTPRKCMHCEVAETPQWREGPMGPKTLCNACGV 240 (280)
Q Consensus 208 ~~~~~C~~Cgvt~TP~WR~GP~G~~tLCNACGL 240 (280)
.....|.+||...-| ..+|-.||.
T Consensus 28 p~l~~c~~cG~~~~p---------H~vc~~CG~ 51 (60)
T 2zjr_Z 28 PNLTECPQCHGKKLS---------HHICPNCGY 51 (60)
T ss_dssp CCCEECTTTCCEECT---------TBCCTTTCB
T ss_pred CCceECCCCCCEeCC---------ceEcCCCCc
Confidence 456689999987433 679999993
Done!