Query 023589
Match_columns 280
No_of_seqs 250 out of 1297
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03019 carbonic anhydrase 100.0 1.3E-80 2.9E-85 577.3 26.3 277 2-280 51-330 (330)
2 PLN03014 carbonic anhydrase 100.0 2.2E-74 4.8E-79 538.1 26.2 260 21-280 74-336 (347)
3 PLN00416 carbonate dehydratase 100.0 1.4E-67 3E-72 480.7 26.0 255 25-279 1-256 (258)
4 PLN03006 carbonate dehydratase 100.0 1.8E-63 4E-68 459.2 23.2 242 33-276 38-283 (301)
5 PRK10437 carbonic anhydrase; P 100.0 7.1E-54 1.5E-58 382.6 20.9 196 72-276 3-199 (220)
6 PLN02154 carbonic anhydrase 100.0 9.5E-54 2.1E-58 392.5 22.1 205 68-273 71-275 (290)
7 cd00884 beta_CA_cladeB Carboni 100.0 5.4E-54 1.2E-58 376.5 18.5 189 79-268 1-190 (190)
8 cd00883 beta_CA_cladeA Carboni 100.0 4.9E-53 1.1E-57 368.2 18.3 180 80-268 1-182 (182)
9 KOG1578 Predicted carbonic anh 100.0 1.9E-53 4.1E-58 383.6 14.8 255 4-271 6-260 (276)
10 PRK15219 carbonic anhydrase; P 100.0 3.6E-52 7.8E-57 377.1 20.3 189 67-268 51-244 (245)
11 COG0288 CynT Carbonic anhydras 100.0 3.3E-52 7.1E-57 369.4 19.4 199 71-276 2-203 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 8.7E-48 1.9E-52 326.7 16.6 150 69-268 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 8.5E-44 1.8E-48 300.3 13.2 152 106-265 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 2.2E-42 4.8E-47 282.2 14.0 119 102-268 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 1.7E-39 3.6E-44 272.6 12.9 142 102-268 1-142 (142)
16 KOG1578 Predicted carbonic anh 98.2 4E-08 8.7E-13 89.8 -5.9 190 76-268 3-249 (276)
17 PF10070 DUF2309: Uncharacteri 65.4 15 0.00032 39.3 6.3 38 235-272 540-583 (788)
18 COG1254 AcyP Acylphosphatases 63.1 6.3 0.00014 30.8 2.4 19 250-268 29-47 (92)
19 TIGR02742 TrbC_Ftype type-F co 48.1 31 0.00068 28.6 4.3 57 87-162 56-112 (130)
20 PRK14445 acylphosphatase; Prov 38.3 38 0.00081 26.1 3.1 19 250-268 29-47 (91)
21 PRK14066 exodeoxyribonuclease 37.7 57 0.0012 24.5 3.9 27 25-51 1-29 (75)
22 PF00355 Rieske: Rieske [2Fe-2 36.7 12 0.00026 28.2 0.1 16 252-267 65-80 (97)
23 cd04321 ScAspRS_mt_like_N ScAs 35.2 51 0.0011 24.7 3.4 26 250-275 1-28 (86)
24 PF02845 CUE: CUE domain; Int 34.6 1.2E+02 0.0025 19.6 4.7 41 31-80 2-42 (42)
25 PF00009 GTP_EFTU: Elongation 33.5 26 0.00057 29.7 1.7 14 162-175 2-15 (188)
26 PRK14432 acylphosphatase; Prov 33.3 33 0.00071 26.6 2.1 20 250-269 27-46 (93)
27 PRK14441 acylphosphatase; Prov 31.4 60 0.0013 25.1 3.3 19 250-268 30-48 (93)
28 PRK14440 acylphosphatase; Prov 31.2 39 0.00084 26.0 2.2 19 250-268 28-46 (90)
29 PRK11440 putative hydrolase; P 31.1 97 0.0021 26.4 4.9 47 122-178 90-136 (188)
30 PRK14430 acylphosphatase; Prov 30.6 39 0.00084 26.2 2.1 18 251-268 30-47 (92)
31 cd01891 TypA_BipA TypA (tyrosi 30.6 33 0.00071 29.1 1.9 14 162-175 1-14 (194)
32 PRK14423 acylphosphatase; Prov 30.3 47 0.001 25.6 2.5 19 250-268 30-48 (92)
33 PF04019 DUF359: Protein of un 30.2 2.2E+02 0.0049 23.2 6.6 79 98-184 6-84 (121)
34 cd03528 Rieske_RO_ferredoxin R 29.8 20 0.00044 27.1 0.4 15 252-266 61-75 (98)
35 PF08184 Cuticle_2: Cuticle pr 29.5 26 0.00057 24.2 0.8 13 254-266 7-19 (59)
36 PRK14446 acylphosphatase; Prov 29.4 69 0.0015 24.6 3.3 19 250-268 27-45 (88)
37 cd03478 Rieske_AIFL_N AIFL (ap 29.1 18 0.0004 27.4 -0.0 15 252-266 60-74 (95)
38 KOG2781 U3 small nucleolar rib 28.5 2.3E+02 0.005 26.4 6.9 67 99-175 78-144 (290)
39 PF01707 Peptidase_C9: Peptida 28.5 25 0.00055 31.2 0.8 34 235-274 139-173 (202)
40 PRK14429 acylphosphatase; Prov 27.6 53 0.0011 25.2 2.3 18 251-268 28-45 (90)
41 KOG0025 Zn2+-binding dehydroge 27.4 84 0.0018 30.2 4.0 41 120-171 154-194 (354)
42 PF00561 Abhydrolase_1: alpha/ 26.9 52 0.0011 27.4 2.5 30 149-179 29-58 (230)
43 PF05952 ComX: Bacillus compet 26.8 81 0.0017 22.6 2.9 25 232-256 5-29 (57)
44 PRK14451 acylphosphatase; Prov 26.6 50 0.0011 25.3 2.1 19 250-268 28-46 (89)
45 COG1116 TauB ABC-type nitrate/ 26.6 40 0.00087 31.1 1.8 15 162-176 28-42 (248)
46 PRK14448 acylphosphatase; Prov 26.3 50 0.0011 25.4 2.0 18 251-268 28-45 (90)
47 PF08822 DUF1804: Protein of u 26.2 1.6E+02 0.0034 25.6 5.2 54 28-82 106-159 (165)
48 cd01890 LepA LepA subfamily. 25.9 38 0.00083 27.8 1.4 12 164-175 1-12 (179)
49 PF10500 SR-25: Nuclear RNA-sp 25.8 28 0.00062 31.5 0.6 43 232-275 150-193 (225)
50 PRK11181 23S rRNA (guanosine-2 25.7 3.7E+02 0.008 24.3 7.9 75 91-175 54-133 (244)
51 TIGR02377 MocE_fam_FeS Rieske 24.8 30 0.00065 26.8 0.5 15 252-266 63-77 (101)
52 PRK14426 acylphosphatase; Prov 24.7 61 0.0013 25.0 2.2 19 250-268 29-47 (92)
53 cd03548 Rieske_RO_Alpha_OMO_CA 24.5 40 0.00088 27.6 1.3 17 252-268 77-93 (136)
54 PRK14425 acylphosphatase; Prov 24.2 65 0.0014 25.0 2.3 18 251-268 32-49 (94)
55 PRK14449 acylphosphatase; Prov 23.7 70 0.0015 24.5 2.4 19 250-268 28-46 (90)
56 PRK14436 acylphosphatase; Prov 23.6 69 0.0015 24.7 2.3 19 250-268 29-47 (91)
57 cd00256 VATPase_H VATPase_H, r 23.5 1E+02 0.0022 30.7 4.1 16 99-114 363-378 (429)
58 PRK14420 acylphosphatase; Prov 23.2 69 0.0015 24.5 2.3 18 251-268 28-45 (91)
59 TIGR02378 nirD_assim_sml nitri 23.0 31 0.00068 26.6 0.3 15 252-266 68-82 (105)
60 PRK14434 acylphosphatase; Prov 23.0 76 0.0017 24.5 2.5 19 250-268 27-46 (92)
61 PTZ00119 40S ribosomal protein 23.0 5E+02 0.011 24.6 8.1 66 52-117 135-202 (302)
62 PRK14421 acylphosphatase; Prov 22.8 71 0.0015 25.2 2.3 19 250-268 29-47 (99)
63 PF00708 Acylphosphatase: Acyl 22.7 72 0.0016 24.1 2.3 18 251-268 30-47 (91)
64 PRK14068 exodeoxyribonuclease 22.7 1.4E+02 0.0031 22.4 3.8 23 27-49 5-29 (76)
65 PRK14444 acylphosphatase; Prov 22.6 70 0.0015 24.7 2.2 19 250-268 29-47 (92)
66 PRK14064 exodeoxyribonuclease 22.6 1.5E+02 0.0031 22.3 3.8 22 28-49 6-29 (75)
67 COG2146 {NirD} Ferredoxin subu 22.5 35 0.00076 27.0 0.5 15 252-266 67-81 (106)
68 cd04160 Arfrp1 Arfrp1 subfamil 22.3 49 0.0011 26.7 1.4 12 165-176 1-12 (167)
69 cd03529 Rieske_NirD Assimilato 22.3 31 0.00067 26.7 0.1 15 252-266 67-81 (103)
70 PRK14443 acylphosphatase; Prov 22.0 81 0.0017 24.6 2.4 20 250-269 29-48 (93)
71 PF07739 TipAS: TipAS antibiot 21.9 3.4E+02 0.0074 20.8 6.1 76 25-100 10-86 (118)
72 PRK09511 nirD nitrite reductas 21.7 29 0.00063 27.4 -0.1 15 252-266 71-85 (108)
73 cd04167 Snu114p Snu114p subfam 21.6 53 0.0012 28.5 1.5 13 164-176 1-13 (213)
74 PRK14422 acylphosphatase; Prov 21.3 75 0.0016 24.6 2.1 19 250-268 31-49 (93)
75 cd04169 RF3 RF3 subfamily. Pe 21.1 62 0.0014 29.7 1.9 14 163-176 2-15 (267)
76 cd03473 Rieske_CMP_Neu5Ac_hydr 20.9 36 0.00077 27.4 0.2 16 251-266 70-85 (107)
77 cd03474 Rieske_T4moC Toluene-4 20.8 39 0.00085 26.2 0.5 15 251-265 61-75 (108)
78 PRK14433 acylphosphatase; Prov 20.8 79 0.0017 24.1 2.2 19 250-268 26-44 (87)
79 PRK09965 3-phenylpropionate di 20.5 38 0.00083 26.4 0.3 15 252-266 63-77 (106)
80 cd01878 HflX HflX subfamily. 20.4 69 0.0015 27.2 1.9 16 161-176 39-54 (204)
81 PRK14435 acylphosphatase; Prov 20.3 82 0.0018 24.2 2.2 19 251-269 28-46 (90)
82 cd03530 Rieske_NirD_small_Baci 20.3 32 0.0007 26.1 -0.1 14 252-265 62-75 (98)
83 PRK14437 acylphosphatase; Prov 20.2 77 0.0017 25.4 2.0 19 251-269 49-67 (109)
84 PF00857 Isochorismatase: Isoc 20.2 2.1E+02 0.0045 23.5 4.8 44 126-179 85-128 (174)
No 1
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=1.3e-80 Score=577.26 Aligned_cols=277 Identities=65% Similarity=1.108 Sum_probs=252.8
Q ss_pred chhhhhhhhhhhccCCchhhhhhhhhhhHHHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhcC---CCChHHHHHHHH
Q 023589 2 ATKFSKCMMLCCVRKSPVAQREDMANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAG---SRDIDPAERMKT 78 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~p~~~l~~Ll~ 78 (280)
.++|++|||+||++|++.+ .++|+++|||+||++|+|||+||++|+.+|++||+++|++|++.+ ++|++++++|++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~ 129 (330)
T PLN03019 51 LSANGACFRCTCFSHFKLE-LRRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKE 129 (330)
T ss_pred HhhccccceeeccccCchh-hHHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHH
Confidence 4689999999999999985 345999999999999999999999999999999999999999743 568999999999
Q ss_pred HHHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHH
Q 023589 79 GFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAV 158 (280)
Q Consensus 79 GN~rF~~~~~~~~p~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv 158 (280)
||++|+.+.+.++|++|++|++||+|+++||+||||||+|+.|||++|||+||||||||+|+|+|...++++++||||||
T Consensus 130 GN~rF~~~~~~~~p~~~~~La~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV 209 (330)
T PLN03019 130 GFVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAV 209 (330)
T ss_pred HHHHHHhccccccHHHHHhhccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988766677889999999
Q ss_pred HhcCcceEEEeccCCCCccccccCCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhHHHHHHHHHHHhhc
Q 023589 159 LHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLT 238 (280)
Q Consensus 159 ~~L~V~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 238 (280)
.+|||++|||||||+||||+|+++...++....++|++|++.+.|++..+....+...+.+++..+++ ||++||++|++
T Consensus 210 ~~L~V~~IVV~GHs~CGaVkAal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t 288 (330)
T PLN03019 210 LHLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLT 288 (330)
T ss_pred HHhCCCEEEEecCCCchHHHHHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHh
Confidence 99999999999999999999999865555455689999999999998776554445566666666665 99999999999
Q ss_pred ChhHHHhhhCCceeEEEEEEEccCCeEEEEeccCCCCCCCCC
Q 023589 239 YPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV 280 (280)
Q Consensus 239 ~p~v~~~v~~g~l~V~G~vYDi~tG~v~~~~~~~~~~~~~~~ 280 (280)
+|+|++++++|+|.||||+||++||+|++|+.+++++|++|+
T Consensus 289 ~P~V~e~v~~G~L~I~G~~YDl~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 289 YPFVREGVVKGTLALKGGYYDFVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred CHHHHHHHHcCCcEEEEEEEECCCceEEEEccccCcCCCCcC
Confidence 999999999999999999999999999999999999999986
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=2.2e-74 Score=538.08 Aligned_cols=260 Identities=67% Similarity=1.131 Sum_probs=241.0
Q ss_pred hhhhhhhhhHHHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHhhhccCChhhHhh
Q 023589 21 QREDMANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAG---SRDIDPAERMKTGFIQFRTEKYEKNPDLYGA 97 (280)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~ 97 (280)
.+|||+++|||+||++|+|||+||++|+.+|++||+++|++|++.. +.+++++++|++||++|+++.+.+++++|++
T Consensus 74 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~ 153 (347)
T PLN03014 74 WSEEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGE 153 (347)
T ss_pred hHhhhchhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHh
Confidence 4799999999999999999999999999999999999999999633 4689999999999999999999999999999
Q ss_pred hhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEeccCCCCcc
Q 023589 98 LAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGI 177 (280)
Q Consensus 98 la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav 177 (280)
+++||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...+++++++||||+.+|+|++|||||||+||||
T Consensus 154 La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV 233 (347)
T PLN03014 154 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGI 233 (347)
T ss_pred hccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHH
Confidence 99999999999999999999999999999999999999999999886555678899999999999999999999999999
Q ss_pred ccccCCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhHHHHHHHHHHHhhcChhHHHhhhCCceeEEEEE
Q 023589 178 KGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAH 257 (280)
Q Consensus 178 ~a~~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~V~G~v 257 (280)
+|+++...++....++|++|+..+.|++.++..+.....+.+++..++++||++||++|++||+|++++++|+|.||||+
T Consensus 234 ~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~ 313 (347)
T PLN03014 234 KGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGY 313 (347)
T ss_pred HHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEE
Confidence 99988655554456899999999999988776666666777888788899999999999999999999999999999999
Q ss_pred EEccCCeEEEEeccCCCCCCCCC
Q 023589 258 YDFVNGKFELWDLDFNILPSVSV 280 (280)
Q Consensus 258 YDi~tG~v~~~~~~~~~~~~~~~ 280 (280)
||++||+|++|+.+++++|++++
T Consensus 314 YDi~TG~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 314 YDFVKGAFELWGLEFGLSETSSV 336 (347)
T ss_pred EECCCceEEEeccccccCCcccc
Confidence 99999999999999999999875
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=1.4e-67 Score=480.68 Aligned_cols=255 Identities=69% Similarity=1.150 Sum_probs=230.9
Q ss_pred hhhhhHHHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhccCChhhHhhhhcCCCC
Q 023589 25 MANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSP 104 (280)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~la~gQ~P 104 (280)
|+.+||+++|.+|.+|||.++.+++++++++.-++++|+..+.+|.+++++|++||+||+.+++.+++++|+.++.||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~P 80 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELDSSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQTP 80 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCCC
Confidence 88999999999999999999999999999999999999999889999999999999999999988899999999999999
Q ss_pred ceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEeccCCCCccccccCCC
Q 023589 105 KFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIP 184 (280)
Q Consensus 105 ~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav~a~~~~~ 184 (280)
+++|||||||||+|+.|||++|||+|||||+||+|+|+|...++++.+|||||+.+|||++|||||||+||||+|+++..
T Consensus 81 ~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~~ 160 (258)
T PLN00416 81 KFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIE 160 (258)
T ss_pred CEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcc
Confidence 99999999999999999999999999999999999998764445688999999999999999999999999999998643
Q ss_pred CCC-CCcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhHHHHHHHHHHHhhcChhHHHhhhCCceeEEEEEEEccCC
Q 023589 185 DNG-TTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNG 263 (280)
Q Consensus 185 ~~~-~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~V~G~vYDi~tG 263 (280)
+.. ....+++..|+....|++..........++.+.+..++++||++|+++|++||+|++++++|++.|||||||++||
T Consensus 161 ~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~TG 240 (258)
T PLN00416 161 DDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVKG 240 (258)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCc
Confidence 221 1224689999999888877655444455666666678889999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCCCC
Q 023589 264 KFELWDLDFNILPSVS 279 (280)
Q Consensus 264 ~v~~~~~~~~~~~~~~ 279 (280)
+|++|+++++.+|...
T Consensus 241 ~v~~~~~~~~~~p~~~ 256 (258)
T PLN00416 241 TFDLWELDFKTTPAFA 256 (258)
T ss_pred eEEEeccCcCCCCCcc
Confidence 9999999999998753
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1.8e-63 Score=459.15 Aligned_cols=242 Identities=42% Similarity=0.780 Sum_probs=214.1
Q ss_pred HHHHHHHhhc-ccCCchhhHHHhHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHhhhccCChhhHhhhhcCCCCceEE
Q 023589 33 AIAGLTKLLS-EKSDLEGIAAAKIKQITADLEAAG---SRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLV 108 (280)
Q Consensus 33 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~---~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~la~gQ~P~~lv 108 (280)
+..+|..-++ +..+|+.+|++|+++||+||++.. ..|++++++|++||.+|+..++.++|++|++|++||+|+++|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lv 117 (301)
T PLN03006 38 TQLRIPASFRRKATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLV 117 (301)
T ss_pred eEecccccccccccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEE
Confidence 3445555444 556999999999999999999754 248999999999999999999999999999999999999999
Q ss_pred eeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCC
Q 023589 109 FACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGT 188 (280)
Q Consensus 109 itCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav~a~~~~~~~~~ 188 (280)
|+||||||+|+.|||++|||+||||||||+|+|+|... .++.+||||||.+|+|++|||||||+||||+|+++..+.+.
T Consensus 118 I~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~ 196 (301)
T PLN03006 118 IACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGD 196 (301)
T ss_pred EEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccCC
Confidence 99999999999999999999999999999999987643 46889999999999999999999999999999998655543
Q ss_pred CcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhHHHHHHHHHHHhhcChhHHHhhhCCceeEEEEEEEccCCeEEEE
Q 023589 189 TASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 189 ~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~V~G~vYDi~tG~v~~~ 268 (280)
..++|+.|+..+.+++..+........+.+++..++++||++||++|++||+|++++++|+|.|||||||+.||+|+.|
T Consensus 197 -~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~ 275 (301)
T PLN03006 197 -SRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKW 275 (301)
T ss_pred -chhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEe
Confidence 4679999999888887666543334456777888999999999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 023589 269 DLDFNILP 276 (280)
Q Consensus 269 ~~~~~~~~ 276 (280)
+++++++.
T Consensus 276 ~~~~~~~~ 283 (301)
T PLN03006 276 TVDYAASR 283 (301)
T ss_pred cccccccc
Confidence 99998765
No 5
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=7.1e-54 Score=382.58 Aligned_cols=196 Identities=24% Similarity=0.401 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchh
Q 023589 72 PAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAG 151 (280)
Q Consensus 72 ~l~~Ll~GN~rF~~~~~~~~p~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~ 151 (280)
.+++|++||++|++..+..+|++|+.++.+|+|+++|||||||||+|+.+||.+|||+||+||+||+|++.|. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 5889999999999998888999999999999999999999999999999999999999999999999998764 378
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhHHHHHHH
Q 023589 152 AAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNV 231 (280)
Q Consensus 152 asLEyAv~~L~V~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~ 231 (280)
++||||+.+|+|++|||||||+||||+|+++... .+++..|+....|+...........+..+....++++||+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~~-----~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~ 153 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPE-----LGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVME 153 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCCC-----cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999986432 36899999998888765444344445556667788999999
Q ss_pred HHHHhhcChhHHHhhhCC-ceeEEEEEEEccCCeEEEEeccCCCCC
Q 023589 232 SLGNLLTYPFVRESVVKN-TLALKGAHYDFVNGKFELWDLDFNILP 276 (280)
Q Consensus 232 ~v~~L~~~p~v~~~v~~g-~l~V~G~vYDi~tG~v~~~~~~~~~~~ 276 (280)
|+++|+++|+|++++++| +|.||||+||+.||+|+.++.+....+
T Consensus 154 qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~~ 199 (220)
T PRK10437 154 QVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRE 199 (220)
T ss_pred HHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCchh
Confidence 999999999999999999 699999999999999999987665443
No 6
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=9.5e-54 Score=392.53 Aligned_cols=205 Identities=41% Similarity=0.768 Sum_probs=177.9
Q ss_pred CChHHHHHHHHHHHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccc
Q 023589 68 RDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKY 147 (280)
Q Consensus 68 ~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~ 147 (280)
+..+.+++|++||++|+.+++..++++|++|+.||+|+++||+||||||+|+.|||++|||+||+||+||+|++++.. +
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~ 149 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-P 149 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-c
Confidence 345779999999999999999999999999999999999999999999999999999999999999999999987642 2
Q ss_pred cchhHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhHHH
Q 023589 148 SGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKE 227 (280)
Q Consensus 148 ~~~~asLEyAv~~L~V~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~ 227 (280)
.++.+|||||+.+|+|++|||||||+||||+|+++.........++++.|+..+.+++.......+...+.+.+..++++
T Consensus 150 ~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~ 229 (290)
T PLN02154 150 TETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKE 229 (290)
T ss_pred cchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 35889999999999999999999999999999987532222345799999987776654433222334556667778889
Q ss_pred HHHHHHHHhhcChhHHHhhhCCceeEEEEEEEccCCeEEEEeccCC
Q 023589 228 AVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFN 273 (280)
Q Consensus 228 nV~~~v~~L~~~p~v~~~v~~g~l~V~G~vYDi~tG~v~~~~~~~~ 273 (280)
||++|+++|++||+|++++++|+|+||||+||+.||+|+.|+.+.+
T Consensus 230 NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~ 275 (290)
T PLN02154 230 SIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD 275 (290)
T ss_pred HHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC
Confidence 9999999999999999999999999999999999999999998774
No 7
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.4e-54 Score=376.47 Aligned_cols=189 Identities=50% Similarity=0.808 Sum_probs=165.9
Q ss_pred HHHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCc-cccchhHHHHHH
Q 023589 79 GFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK-KYSGAGAAIEYA 157 (280)
Q Consensus 79 GN~rF~~~~~~~~p~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~-~~~~~~asLEyA 157 (280)
||++|++..+..++++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++.+ .++++.+|||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999988889999999999999999999999999999999999999999999999999987542 234688999999
Q ss_pred HHhcCcceEEEeccCCCCccccccCCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhHHHHHHHHHHHhh
Q 023589 158 VLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLL 237 (280)
Q Consensus 158 v~~L~V~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~ 237 (280)
+.+|+|++|||||||+||||+|+++... +....+++..|+....|+...........+..+....++++||++|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543 123356899999998888876655443344555666788999999999999
Q ss_pred cChhHHHhhhCCceeEEEEEEEccCCeEEEE
Q 023589 238 TYPFVRESVVKNTLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 238 ~~p~v~~~v~~g~l~V~G~vYDi~tG~v~~~ 268 (280)
++|+|++++++|+|.|||||||+.||+|+.|
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999864
No 8
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4.9e-53 Score=368.22 Aligned_cols=180 Identities=34% Similarity=0.541 Sum_probs=158.0
Q ss_pred HHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHH
Q 023589 80 FIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVL 159 (280)
Q Consensus 80 N~rF~~~~~~~~p~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~ 159 (280)
|++|++.++.++|++|++++.||+|+++|||||||||+|+.|||.+|||+||+||+||+|+++|. ++.+|||||+.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998764 47899999999
Q ss_pred hcCcceEEEeccCCCCccccccCCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCC-ChHHHhhHhHHHHHHHHHHHhhc
Q 023589 160 HLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDL-SFEEQCKNCEKEAVNVSLGNLLT 238 (280)
Q Consensus 160 ~L~V~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~-~~~~~~~~~~~~nV~~~v~~L~~ 238 (280)
+|||++|||||||+||||+|+++.. ..+++..|+....++........... +..+....++++||++|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998643 23689999988877665433222222 33455567889999999999999
Q ss_pred ChhHHHhhhC-CceeEEEEEEEccCCeEEEE
Q 023589 239 YPFVRESVVK-NTLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 239 ~p~v~~~v~~-g~l~V~G~vYDi~tG~v~~~ 268 (280)
+|+|++++++ |+|.||||+||+.||+|+.+
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999999 89999999999999999853
No 9
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-53 Score=383.57 Aligned_cols=255 Identities=47% Similarity=0.745 Sum_probs=236.6
Q ss_pred hhhhhhhhhhccCCchhhhhhhhhhhHHHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 023589 4 KFSKCMMLCCVRKSPVAQREDMANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQF 83 (280)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~l~~Ll~GN~rF 83 (280)
.+..|.+.|| ...+ .+..+|..++|+.+++.+.++|..+.++ +++++++++|++ ++.+++|+++|..|
T Consensus 6 ~~~~~~~t~~-~~~~-~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~--------~~~~~~i~~~Fv~~ 73 (276)
T KOG1578|consen 6 GVIRFRNTTR-KDLV-EEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE--------FDTLEDIGDMFVVR 73 (276)
T ss_pred ccchhhhhhH-HHhH-HHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc--------cchHHHHHhhHhhh
Confidence 3444444444 4444 3478999999999999999999999999 999999999993 67899999999999
Q ss_pred HhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCc
Q 023589 84 RTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKV 163 (280)
Q Consensus 84 ~~~~~~~~p~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V 163 (280)
.++++.++|.+|..++++|+|+.+||+|+||||+|++|++++|||.|+|||++|+|+|+|.+.+..++|+|||+|.+|+|
T Consensus 74 ~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkv 153 (276)
T KOG1578|consen 74 NSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKV 153 (276)
T ss_pred ccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999888888899999999999999
Q ss_pred ceEEEeccCCCCccccccCCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhHHHHHHHHHHHhhcChhHH
Q 023589 164 ENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVR 243 (280)
Q Consensus 164 ~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~ 243 (280)
++|+||||++||||+++|....++. ..+|+.+|+.+..+++..++.....+.+.+||..++.++++.++.+|.+||+++
T Consensus 154 enIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr 232 (276)
T KOG1578|consen 154 ENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVR 232 (276)
T ss_pred ceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 9999999999999999999887766 678999999999999988888888899999999999999999999999999999
Q ss_pred HhhhCCceeEEEEEEEccCCeEEEEecc
Q 023589 244 ESVVKNTLALKGAHYDFVNGKFELWDLD 271 (280)
Q Consensus 244 ~~v~~g~l~V~G~vYDi~tG~v~~~~~~ 271 (280)
+++.+|.+.+||++||+..|.+++|.+|
T Consensus 233 ~~v~k~~l~~~G~~Y~fskg~~~~~~ld 260 (276)
T KOG1578|consen 233 EAVVKGFLQVHGGYYNFSKGTKEFWELD 260 (276)
T ss_pred HHHhhcceeeeeeeEEeccCceeEEEec
Confidence 9999999999999999999999999999
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=3.6e-52 Score=377.13 Aligned_cols=189 Identities=22% Similarity=0.347 Sum_probs=161.7
Q ss_pred CCChHHHHHHHHHHHHHHhhhccCChhhH---hhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCC
Q 023589 67 SRDIDPAERMKTGFIQFRTEKYEKNPDLY---GALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYD 143 (280)
Q Consensus 67 ~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~---~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d 143 (280)
.+|.+++++|++||+||+++.+. +++++ .++++||+|+++|||||||||+|+.|||.+|||+||+||+||+|++
T Consensus 51 ~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~-- 127 (245)
T PRK15219 51 MTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND-- 127 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc--
Confidence 57899999999999999998865 44433 2467899999999999999999999999999999999999999975
Q ss_pred CccccchhHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCcchhHHHHHHhhhhhHHHHHhhc-CCCChHHHhh
Q 023589 144 QKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKEC-NDLSFEEQCK 222 (280)
Q Consensus 144 ~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~-~~~~~~~~~~ 222 (280)
.+.+|||||+.+|+|++|||||||+||||+|+++... .+++..|+..+.|+........ ...+..+...
T Consensus 128 -----~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~ 197 (245)
T PRK15219 128 -----DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVD 197 (245)
T ss_pred -----chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHH
Confidence 2678999999999999999999999999999987532 3589999999988876543211 1113344556
Q ss_pred HhHHHHHHHHHHHhhc-ChhHHHhhhCCceeEEEEEEEccCCeEEEE
Q 023589 223 NCEKEAVNVSLGNLLT-YPFVRESVVKNTLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 223 ~~~~~nV~~~v~~L~~-~p~v~~~v~~g~l~V~G~vYDi~tG~v~~~ 268 (280)
.++++||+.|+++|++ +|++++.+++|+|+||||+||+.||+|+++
T Consensus 198 ~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 198 AVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 7889999999999996 799999999999999999999999999987
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-52 Score=369.40 Aligned_cols=199 Identities=31% Similarity=0.493 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHhhhh-cCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccc
Q 023589 71 DPAERMKTGFIQFRTEKYEKNPDLYGALA-KGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSG 149 (280)
Q Consensus 71 ~~l~~Ll~GN~rF~~~~~~~~p~~~~~la-~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~ 149 (280)
..++.|++||++|.++.++.++.+|+.++ ++|+|+++|||||||||+|+.+||++|||+||+|||||+|+|++. +
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~----~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDG----S 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCcc----c
Confidence 46899999999999999888999998876 569999999999999999999999999999999999999998753 5
Q ss_pred hhHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCCChH-HHhhHhHHHH
Q 023589 150 AGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFE-EQCKNCEKEA 228 (280)
Q Consensus 150 ~~asLEyAv~~L~V~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~-~~~~~~~~~n 228 (280)
+++|||||+.+|||++|||||||+|||++|++.....+.. .+..|+....+............... +.....++.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8899999999999999999999999999999876554432 58999977666654443322222222 4445667899
Q ss_pred HHHHHHHhhcChhHHHhhhCCc-eeEEEEEEEccCCeEEEEeccCCCCC
Q 023589 229 VNVSLGNLLTYPFVRESVVKNT-LALKGAHYDFVNGKFELWDLDFNILP 276 (280)
Q Consensus 229 V~~~v~~L~~~p~v~~~v~~g~-l~V~G~vYDi~tG~v~~~~~~~~~~~ 276 (280)
|++||++|+++|.|+.++..|+ |.||||+||++||+++.++......+
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~~ 203 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDFE 203 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccccc
Confidence 9999999999999999988777 99999999999999998887665443
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=8.7e-48 Score=326.67 Aligned_cols=150 Identities=33% Similarity=0.481 Sum_probs=136.5
Q ss_pred ChHHHHHHHHHHHHHHhhhccC---ChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCc
Q 023589 69 DIDPAERMKTGFIQFRTEKYEK---NPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 145 (280)
Q Consensus 69 p~~~l~~Ll~GN~rF~~~~~~~---~p~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~ 145 (280)
|.+++++|++||++|.+++... +++.|.+++++|+|+++||||||||++|+.+||++|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 6789999999999999876431 256788999999999999999999999999999999999999999999986
Q ss_pred cccchhHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhH
Q 023589 146 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCE 225 (280)
Q Consensus 146 ~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav~a~~~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~ 225 (280)
++.+|||||+.+|||++|||||||+||+++++ +.
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~ 110 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AV 110 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HH
Confidence 37789999999999999999999999998754 24
Q ss_pred HHHHHHHHHHhhcChhHHH-hhhCCceeEEEEEEEccCCeEEEE
Q 023589 226 KEAVNVSLGNLLTYPFVRE-SVVKNTLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 226 ~~nV~~~v~~L~~~p~v~~-~v~~g~l~V~G~vYDi~tG~v~~~ 268 (280)
++||+.|+++|+++|+|++ ++++|++.||||+||++||+|+++
T Consensus 111 ~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 111 RANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 6899999999999999988 999999999999999999999873
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=8.5e-44 Score=300.35 Aligned_cols=152 Identities=36% Similarity=0.613 Sum_probs=121.5
Q ss_pred eEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEeccCCCCccccccCCCC
Q 023589 106 FLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPD 185 (280)
Q Consensus 106 ~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav~a~~~~~~ 185 (280)
++||||||||++|+.+||.+|||+||+||+||+|++.+. ++.+|||||+.+||+++|||||||+|||+++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~~----~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPDD----SALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-H----HHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCcccc----chhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 589999999999999999999999999999999987643 5889999999999999999999999999998765211
Q ss_pred CCCCcchhHHHHHHhhhhhHHHHHhh-cCCCChHHHhhHhHHHHHHHHHHHhhcChhHHHhhhCCceeEEEEEEEccCCe
Q 023589 186 NGTTASDFIEEWVKICSSAKSKVKKE-CNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGK 264 (280)
Q Consensus 186 ~~~~~~~~i~~wl~~~~pa~~~~~~~-~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~V~G~vYDi~tG~ 264 (280)
..+.+++|++...|+......+ .......+.....+++||++||++|+++|+|++++++|++.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 2468999999888877653222 12222222233347899999999999999999999999999999999999998
Q ss_pred E
Q 023589 265 F 265 (280)
Q Consensus 265 v 265 (280)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.2e-42 Score=282.17 Aligned_cols=119 Identities=44% Similarity=0.746 Sum_probs=111.4
Q ss_pred CCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 023589 102 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 181 (280)
Q Consensus 102 Q~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav~a~~ 181 (280)
|+|+++||||||||++|+.+||++|||+||+||+||+|++.|. ++.+|||||+.+||+++|+|||||+||++++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~~----~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYDL----DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCcc----cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 7999999999999999999999999999999999999987643 5889999999999999999999999999774
Q ss_pred CCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhHHHHHHHHHHHhhcChhHHHhhhCCceeEEEEEEEcc
Q 023589 182 SIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFV 261 (280)
Q Consensus 182 ~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~V~G~vYDi~ 261 (280)
..++||++|+++|+++|+++++++++++.|||++||++
T Consensus 75 ------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~ 112 (119)
T cd00382 75 ------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIE 112 (119)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECC
Confidence 24689999999999999999999999999999999999
Q ss_pred CCeEEEE
Q 023589 262 NGKFELW 268 (280)
Q Consensus 262 tG~v~~~ 268 (280)
||+++++
T Consensus 113 tG~v~~~ 119 (119)
T cd00382 113 TGKLEVL 119 (119)
T ss_pred CCEEEeC
Confidence 9999874
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.7e-39 Score=272.63 Aligned_cols=142 Identities=23% Similarity=0.298 Sum_probs=113.8
Q ss_pred CCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 023589 102 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 181 (280)
Q Consensus 102 Q~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav~a~~ 181 (280)
+.++++||||||||++|+.+||++|||+||+|||||+|++ ++++||+||+.+||+++|+|||||+||+++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3679999999999999999999999999999999999986 277899999999999999999999999999864
Q ss_pred CCCCCCCCcchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHhHHHHHHHHHHHhhcChhHHHhhhCCceeEEEEEEEcc
Q 023589 182 SIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFV 261 (280)
Q Consensus 182 ~~~~~~~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~V~G~vYDi~ 261 (280)
+ .+..|+........... .....+......+++||++|+++|+++|++++ +++||||+||++
T Consensus 74 ~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~ 135 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYGG---IDKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVK 135 (142)
T ss_pred H----------HHHHHHHHhcCcchhcc---cCcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECC
Confidence 3 24556653211100000 11122222334678999999999999999998 589999999999
Q ss_pred CCeEEEE
Q 023589 262 NGKFELW 268 (280)
Q Consensus 262 tG~v~~~ 268 (280)
||+++.+
T Consensus 136 tG~v~~v 142 (142)
T cd03379 136 TGKLTEV 142 (142)
T ss_pred CCEEEeC
Confidence 9999853
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.18 E-value=4e-08 Score=89.84 Aligned_cols=190 Identities=21% Similarity=0.288 Sum_probs=119.4
Q ss_pred HHHHHHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhh----------------cCCCCCcEEEEeccCCcC
Q 023589 76 MKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHI----------------LNFQPGEAFMVRNIANMV 139 (280)
Q Consensus 76 Ll~GN~rF~~~~~~~~p~~~~~la~gQ~P~~lvitCsDSRV~pe~i----------------l~~~pGe~FVvRNaGN~V 139 (280)
|+.|..+|+...... +..++..-++|.+..++|+|||+-|... +....||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 677888888765432 2256777889999999999999999766 667899999999999999
Q ss_pred CCCCC----cc-ccchhHHHHHHHHhcCcceEEEeccCCCCccccccCCCC--CCC---CcchhHHHHHHhhhhhH----
Q 023589 140 PPYDQ----KK-YSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPD--NGT---TASDFIEEWVKICSSAK---- 205 (280)
Q Consensus 140 ~~~d~----~~-~~~~~asLEyAv~~L~V~~IVV~GHt~CGav~a~~~~~~--~~~---~~~~~i~~wl~~~~pa~---- 205 (280)
+.... .. .+--.++|+-|+..-...||++|||++|-+++...+... +.. .....++-|+....-..
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ 159 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVI 159 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEe
Confidence 85321 00 011123567777788889999999999999997655433 111 12257888875321000
Q ss_pred -----HHHH------hhcCCCChHHH------------hhHhHHHHHHHHHHHhhcChhHH--HhhhCCceeEEE--EEE
Q 023589 206 -----SKVK------KECNDLSFEEQ------------CKNCEKEAVNVSLGNLLTYPFVR--ESVVKNTLALKG--AHY 258 (280)
Q Consensus 206 -----~~~~------~~~~~~~~~~~------------~~~~~~~nV~~~v~~L~~~p~v~--~~v~~g~l~V~G--~vY 258 (280)
...+ .+.+..+|.+. ...+...|..+|.+|..++.+.. ..+......++| .+.
T Consensus 160 ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~ 239 (276)
T KOG1578|consen 160 GHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGF 239 (276)
T ss_pred ccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcc
Confidence 0000 00011112110 01223356778899988887776 455555555666 555
Q ss_pred EccCCeEEEE
Q 023589 259 DFVNGKFELW 268 (280)
Q Consensus 259 Di~tG~v~~~ 268 (280)
+...|..+.+
T Consensus 240 l~~~G~~Y~f 249 (276)
T KOG1578|consen 240 LQVHGGYYNF 249 (276)
T ss_pred eeeeeeeEEe
Confidence 6666655543
No 17
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=65.35 E-value=15 Score=39.34 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=28.9
Q ss_pred HhhcChhHHHhhhCCce------eEEEEEEEccCCeEEEEeccC
Q 023589 235 NLLTYPFVRESVVKNTL------ALKGAHYDFVNGKFELWDLDF 272 (280)
Q Consensus 235 ~L~~~p~v~~~v~~g~l------~V~G~vYDi~tG~v~~~~~~~ 272 (280)
.|...|-||+.+++..| ...|+..|.-|-+|++++.+.
T Consensus 540 ~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 540 ALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 35556777777765544 468999999999999998875
No 18
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=63.13 E-value=6.3 Score=30.82 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|+||+++..+|.|+.+
T Consensus 29 ~lgl~G~V~N~~DGsVeiv 47 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIV 47 (92)
T ss_pred HCCCEEEEEECCCCeEEEE
Confidence 3779999999999999976
No 19
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=48.13 E-value=31 Score=28.63 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=36.4
Q ss_pred hccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcC
Q 023589 87 KYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLK 162 (280)
Q Consensus 87 ~~~~~p~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~ 162 (280)
...-||.+|++..-.+-| ++|+.|.+..+.++.. ..+++-. +..||+ ||+||++.+.
T Consensus 56 ~v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d--~v~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 56 GVQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYD--VVYGNV--------------SLKGALEKMA 112 (130)
T ss_pred cEEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCee--EEEecc--------------cHHHHHHHHH
Confidence 345689999999888888 5788888874444322 2344432 333654 5778877654
No 20
>PRK14445 acylphosphatase; Provisional
Probab=38.26 E-value=38 Score=26.07 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=16.5
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIE 47 (91)
T ss_pred hCCCEEEEEECCCCeEEEE
Confidence 4779999999999998864
No 21
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=37.73 E-value=57 Score=24.50 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHHHhhc--ccCCchhhH
Q 023589 25 MANDAYEDAIAGLTKLLS--EKSDLEGIA 51 (280)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 51 (280)
|...+||+|+.+|.++++ |+++++.--
T Consensus 1 m~~~~fEeal~~LE~IV~~LE~g~l~Lee 29 (75)
T PRK14066 1 MAVEKFETALKKLEEVVKKLEGGELSLDD 29 (75)
T ss_pred CccccHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 667889999999988876 455555533
No 22
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=36.65 E-value=12 Score=28.23 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=13.5
Q ss_pred eEEEEEEEccCCeEEE
Q 023589 252 ALKGAHYDFVNGKFEL 267 (280)
Q Consensus 252 ~V~G~vYDi~tG~v~~ 267 (280)
..|||.||+.||++..
T Consensus 65 p~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 65 PCHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTTEEEETTTSBEEE
T ss_pred CCcCCEEeCCCceEec
Confidence 4799999999998654
No 23
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=35.24 E-value=51 Score=24.68 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=21.0
Q ss_pred ceeEEEEEEEccC--CeEEEEeccCCCC
Q 023589 250 TLALKGAHYDFVN--GKFELWDLDFNIL 275 (280)
Q Consensus 250 ~l~V~G~vYDi~t--G~v~~~~~~~~~~ 275 (280)
++.|+||++.+.. |++.|+++.-+.+
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g 28 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG 28 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC
Confidence 3689999999997 6899988866554
No 24
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=34.64 E-value=1.2e+02 Score=19.63 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhcCCCChHHHHHHHHHH
Q 023589 31 EDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGF 80 (280)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~l~~Ll~GN 80 (280)
++.+..|+.++ ++++. +.+.+-|+....+...+++.|++++
T Consensus 2 ~~~v~~L~~mF---P~~~~------~~I~~~L~~~~~~ve~ai~~LL~~~ 42 (42)
T PF02845_consen 2 EEMVQQLQEMF---PDLDR------EVIEAVLQANNGDVEAAIDALLEMS 42 (42)
T ss_dssp HHHHHHHHHHS---SSS-H------HHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCH------HHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45667777666 33333 3444555554445567888888775
No 25
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=33.46 E-value=26 Score=29.70 Aligned_cols=14 Identities=43% Similarity=0.819 Sum_probs=12.4
Q ss_pred CcceEEEeccCCCC
Q 023589 162 KVENIVVIGHSCCG 175 (280)
Q Consensus 162 ~V~~IVV~GHt~CG 175 (280)
.+.+|.|+||.++|
T Consensus 2 ~~~~I~i~G~~~sG 15 (188)
T PF00009_consen 2 NIRNIAIIGHVDSG 15 (188)
T ss_dssp TEEEEEEEESTTSS
T ss_pred CEEEEEEECCCCCC
Confidence 35789999999999
No 26
>PRK14432 acylphosphatase; Provisional
Probab=33.26 E-value=33 Score=26.65 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.0
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 023589 250 TLALKGAHYDFVNGKFELWD 269 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~~ 269 (280)
++.|+||+.+..+|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 36799999999999988754
No 27
>PRK14441 acylphosphatase; Provisional
Probab=31.38 E-value=60 Score=25.09 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.6
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|+|+.+
T Consensus 30 ~lgL~G~V~N~~dG~Vei~ 48 (93)
T PRK14441 30 RLGVEGWVRNLPDGRVEAE 48 (93)
T ss_pred hcCcEEEEEECCCCEEEEE
Confidence 4779999999999988854
No 28
>PRK14440 acylphosphatase; Provisional
Probab=31.23 E-value=39 Score=26.02 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=16.4
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|.|+.+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 3669999999999998865
No 29
>PRK11440 putative hydrolase; Provisional
Probab=31.08 E-value=97 Score=26.44 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=31.2
Q ss_pred cCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEeccCCCCccc
Q 023589 122 LNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIK 178 (280)
Q Consensus 122 l~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav~ 178 (280)
+...+||.++.++--+-... + .|+.-+...|+++|+|+|=+-..-|.
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV~ 136 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGVE 136 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHHH
Confidence 45668898777765443322 1 36666788999999999965544433
No 30
>PRK14430 acylphosphatase; Provisional
Probab=30.64 E-value=39 Score=26.17 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.9
Q ss_pred eeEEEEEEEccCCeEEEE
Q 023589 251 LALKGAHYDFVNGKFELW 268 (280)
Q Consensus 251 l~V~G~vYDi~tG~v~~~ 268 (280)
+.|.||+.+..+|.|+.+
T Consensus 30 lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 30 LGLGGWVRNRADGTVEVM 47 (92)
T ss_pred hCCEEEEEECCCCcEEEE
Confidence 669999999999998854
No 31
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=30.60 E-value=33 Score=29.13 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=12.6
Q ss_pred CcceEEEeccCCCC
Q 023589 162 KVENIVVIGHSCCG 175 (280)
Q Consensus 162 ~V~~IVV~GHt~CG 175 (280)
.+++|+++||+++|
T Consensus 1 ~~r~i~ivG~~~~G 14 (194)
T cd01891 1 DIRNIAIIAHVDHG 14 (194)
T ss_pred CccEEEEEecCCCC
Confidence 36799999999999
No 32
>PRK14423 acylphosphatase; Provisional
Probab=30.32 E-value=47 Score=25.60 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.6
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|.|+.+
T Consensus 30 ~lgl~G~V~N~~dG~Vei~ 48 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAV 48 (92)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 3779999999999998865
No 33
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=30.23 E-value=2.2e+02 Score=23.23 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=58.6
Q ss_pred hhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEeccCCCCcc
Q 023589 98 LAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGI 177 (280)
Q Consensus 98 la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav 177 (280)
+..|-.|++.++-.==-|-+...... .....+.++|..+.+.. ++..+|..|+..-+--.|+|-|-.|=-++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45788999999988888877654433 55678999999999975 35668888877766678888888777666
Q ss_pred ccccCCC
Q 023589 178 KGLMSIP 184 (280)
Q Consensus 178 ~a~~~~~ 184 (280)
-+.+..+
T Consensus 78 Pail~aP 84 (121)
T PF04019_consen 78 PAILYAP 84 (121)
T ss_pred HHHHhCC
Confidence 5544433
No 34
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=29.82 E-value=20 Score=27.10 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=13.1
Q ss_pred eEEEEEEEccCCeEE
Q 023589 252 ALKGAHYDFVNGKFE 266 (280)
Q Consensus 252 ~V~G~vYDi~tG~v~ 266 (280)
..|||.||+.||+..
T Consensus 61 p~Hg~~fd~~~G~~~ 75 (98)
T cd03528 61 PLHGGRFDLRTGKAL 75 (98)
T ss_pred CCcCCEEECCCCccc
Confidence 589999999999864
No 35
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=29.49 E-value=26 Score=24.25 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=11.1
Q ss_pred EEEEEEccCCeEE
Q 023589 254 KGAHYDFVNGKFE 266 (280)
Q Consensus 254 ~G~vYDi~tG~v~ 266 (280)
-|.-||++||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4789999999875
No 36
>PRK14446 acylphosphatase; Provisional
Probab=29.35 E-value=69 Score=24.62 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=16.8
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|.|+.+
T Consensus 27 ~lgl~G~V~N~~dGsVei~ 45 (88)
T PRK14446 27 ALGLVGHARNQADGSVEVV 45 (88)
T ss_pred eCCeEEEEEECCCCCEEEE
Confidence 4779999999999998865
No 37
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=29.05 E-value=18 Score=27.38 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=13.0
Q ss_pred eEEEEEEEccCCeEE
Q 023589 252 ALKGAHYDFVNGKFE 266 (280)
Q Consensus 252 ~V~G~vYDi~tG~v~ 266 (280)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 489999999999754
No 38
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=28.53 E-value=2.3e+02 Score=26.39 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=35.6
Q ss_pred hcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEeccCCCC
Q 023589 99 AKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCG 175 (280)
Q Consensus 99 a~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CG 175 (280)
+.-+.|+++|-|- |=|-+.+..+.--=-+|+=|+-++-... + +...|--|+..-++..+||++ ..=|
T Consensus 78 ag~~dPKimvTTS---R~PSsrL~~FaKelkLvfPNaqr~nRG~----~--~~~~lv~a~ra~~~Td~iivH-EhRG 144 (290)
T KOG2781|consen 78 AGEEDPKIMVTTS---RDPSSRLKMFAKELKLVFPNAQRLNRGN----Y--VVGELVDAARANGVTDLIIVH-EHRG 144 (290)
T ss_pred ccCCCCcEEEEeC---CCchHHHHHHHHhheEeccChhhhcccc----e--eHHHHHHHHHHCCCceEEEEe-ccCC
Confidence 5567899887764 4443333332222223444544433211 0 223566688888988877774 3444
No 39
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=28.48 E-value=25 Score=31.21 Aligned_cols=34 Identities=26% Similarity=0.587 Sum_probs=22.9
Q ss_pred Hh-hcChhHHHhhhCCceeEEEEEEEccCCeEEEEeccCCC
Q 023589 235 NL-LTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNI 274 (280)
Q Consensus 235 ~L-~~~p~v~~~v~~g~l~V~G~vYDi~tG~v~~~~~~~~~ 274 (280)
.| +.||+++.+++. |-.+|+.||+++.++..-++
T Consensus 139 ~l~~r~P~l~~a~~~------g~q~dv~~g~~~~~~~~~N~ 173 (202)
T PF01707_consen 139 ELERRYPFLRKAWKT------GRQLDVSTGRLQPYSPTCNL 173 (202)
T ss_dssp HHHCC-CCHCCHCCC------T-EEETTTTCEES--TTS--
T ss_pred HHHHhCchhhhcccc------CeeEeecCCceecCCCcccc
Confidence 44 689999998765 57899999999987766544
No 40
>PRK14429 acylphosphatase; Provisional
Probab=27.55 E-value=53 Score=25.19 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=16.0
Q ss_pred eeEEEEEEEccCCeEEEE
Q 023589 251 LALKGAHYDFVNGKFELW 268 (280)
Q Consensus 251 l~V~G~vYDi~tG~v~~~ 268 (280)
+.|.||+.+..+|.|+.+
T Consensus 28 ~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14429 28 LGVTGYVTNCEDGSVEIL 45 (90)
T ss_pred hCCEEEEEECCCCeEEEE
Confidence 679999999999998864
No 41
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=27.40 E-value=84 Score=30.15 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.1
Q ss_pred hhcCCCCCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEecc
Q 023589 120 HILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGH 171 (280)
Q Consensus 120 ~il~~~pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GH 171 (280)
.+-++++|| .||.|.||.. ++.++---+.++|++.|=|+-.
T Consensus 154 dfv~L~~GD-~vIQNganS~----------VG~~ViQlaka~GiktinvVRd 194 (354)
T KOG0025|consen 154 DFVQLNKGD-SVIQNGANSG----------VGQAVIQLAKALGIKTINVVRD 194 (354)
T ss_pred HHHhcCCCC-eeeecCcccH----------HHHHHHHHHHHhCcceEEEeec
Confidence 456899999 7899999964 5544444568899999987743
No 42
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=26.95 E-value=52 Score=27.37 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=24.4
Q ss_pred chhHHHHHHHHhcCcceEEEeccCCCCcccc
Q 023589 149 GAGAAIEYAVLHLKVENIVVIGHSCCGGIKG 179 (280)
Q Consensus 149 ~~~asLEyAv~~L~V~~IVV~GHt~CGav~a 179 (280)
.+.+.+++-...|+++.|.++|||- ||.-+
T Consensus 29 ~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~~ 58 (230)
T PF00561_consen 29 DLAADLEALREALGIKKINLVGHSM-GGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEETH-HHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECC-ChHHH
Confidence 4667888999999999999999976 65443
No 43
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=26.78 E-value=81 Score=22.59 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.8
Q ss_pred HHHHhhcChhHHHhhhCCceeEEEE
Q 023589 232 SLGNLLTYPFVRESVVKNTLALKGA 256 (280)
Q Consensus 232 ~v~~L~~~p~v~~~v~~g~l~V~G~ 256 (280)
-|..|..+|-+-+.+.+|+..+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3677889999999999999999884
No 44
>PRK14451 acylphosphatase; Provisional
Probab=26.62 E-value=50 Score=25.33 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=16.5
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|+||+.+..+|.|+..
T Consensus 28 ~~gl~G~V~N~~dG~Vei~ 46 (89)
T PRK14451 28 QLMISGWARNLADGRVEVF 46 (89)
T ss_pred HhCCEEEEEECCCCCEEEE
Confidence 3679999999999999865
No 45
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.57 E-value=40 Score=31.10 Aligned_cols=15 Identities=40% Similarity=0.716 Sum_probs=12.5
Q ss_pred CcceEEEeccCCCCc
Q 023589 162 KVENIVVIGHSCCGG 176 (280)
Q Consensus 162 ~V~~IVV~GHt~CGa 176 (280)
.=+-|.|+|||+||=
T Consensus 28 ~GEfvsilGpSGcGK 42 (248)
T COG1116 28 KGEFVAILGPSGCGK 42 (248)
T ss_pred CCCEEEEECCCCCCH
Confidence 346899999999994
No 46
>PRK14448 acylphosphatase; Provisional
Probab=26.30 E-value=50 Score=25.36 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=16.0
Q ss_pred eeEEEEEEEccCCeEEEE
Q 023589 251 LALKGAHYDFVNGKFELW 268 (280)
Q Consensus 251 l~V~G~vYDi~tG~v~~~ 268 (280)
+.|.||+.+..+|.|+.+
T Consensus 28 lgl~G~V~N~~dG~Vei~ 45 (90)
T PRK14448 28 IGIKGYVKNRPDGSVEVV 45 (90)
T ss_pred hCCEEEEEECCCCCEEEE
Confidence 669999999999998864
No 47
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.18 E-value=1.6e+02 Score=25.61 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 023589 28 DAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQ 82 (280)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~l~~Ll~GN~r 82 (280)
+||..+++.-++++=|..+|.. |...++.|+.-++...|.-...+-++++.|..
T Consensus 106 Dsf~K~vaaskr~lPets~Lav-A~~vl~~l~~fv~e~~P~h~~af~eiLepFg~ 159 (165)
T PF08822_consen 106 DSFSKMVAASKRVLPETSELAV-AMEVLELLAAFVQERYPQHLAAFLEILEPFGE 159 (165)
T ss_pred HHHHHHHHHHhhcCchHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4445555555555544444432 44444444444444443333444444444433
No 48
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=25.93 E-value=38 Score=27.77 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=11.1
Q ss_pred ceEEEeccCCCC
Q 023589 164 ENIVVIGHSCCG 175 (280)
Q Consensus 164 ~~IVV~GHt~CG 175 (280)
++|+++||+++|
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 479999999999
No 49
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=25.80 E-value=28 Score=31.54 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=32.2
Q ss_pred HHHHhhc-ChhHHHhhhCCceeEEEEEEEccCCeEEEEeccCCCC
Q 023589 232 SLGNLLT-YPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNIL 275 (280)
Q Consensus 232 ~v~~L~~-~p~v~~~v~~g~l~V~G~vYDi~tG~v~~~~~~~~~~ 275 (280)
|-..|.+ -|.-++.|+.. -.|.=+|||.+||..+++.-|+.|-
T Consensus 150 qksr~~am~PmTkEEyear-QSvIRrVvDpETGRtRLIkGdGEil 193 (225)
T PF10500_consen 150 QKSRIQAMAPMTKEEYEAR-QSVIRRVVDPETGRTRLIKGDGEIL 193 (225)
T ss_pred hhhhhhhcCCCCHHHHHHH-HhhheeeecCCCCceeeecccchHH
Confidence 3345555 37888887655 4577799999999999998887654
No 50
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=25.69 E-value=3.7e+02 Score=24.29 Aligned_cols=75 Identities=12% Similarity=0.063 Sum_probs=40.6
Q ss_pred ChhhHhhhhcCCCCceEEeeccCCCC----ChhhhcCCC-CCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcce
Q 023589 91 NPDLYGALAKGQSPKFLVFACSDSRV----CPSHILNFQ-PGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVEN 165 (280)
Q Consensus 91 ~p~~~~~la~gQ~P~~lvitCsDSRV----~pe~il~~~-pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~ 165 (280)
.++.+.++++.++|.=++.-|...+. +.+.++... .+-++++=+ +-.|. .+ ++|-=....+|++.
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~---v~dp~------Nl-Gai~Rta~a~G~~~ 123 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDG---VTDPH------NL-GACLRSADAAGVHA 123 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcC---CCCcc------hH-HHHHHHHHHcCCCE
Confidence 45567778877777655555543332 222333322 122333322 21121 13 36666788899999
Q ss_pred EEEeccCCCC
Q 023589 166 IVVIGHSCCG 175 (280)
Q Consensus 166 IVV~GHt~CG 175 (280)
|++.+|+.+.
T Consensus 124 vi~~~~~~~~ 133 (244)
T PRK11181 124 VIVPKDRSAQ 133 (244)
T ss_pred EEECCCCCCC
Confidence 9998887544
No 51
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=24.79 E-value=30 Score=26.77 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=13.0
Q ss_pred eEEEEEEEccCCeEE
Q 023589 252 ALKGAHYDFVNGKFE 266 (280)
Q Consensus 252 ~V~G~vYDi~tG~v~ 266 (280)
..|||.||+.||+..
T Consensus 63 P~Hg~~Fdl~tG~~~ 77 (101)
T TIGR02377 63 PKHAGCFDYRTGEAL 77 (101)
T ss_pred CccCCEEECCCCccc
Confidence 489999999999754
No 52
>PRK14426 acylphosphatase; Provisional
Probab=24.75 E-value=61 Score=24.98 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.3
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (92)
T PRK14426 29 KLGLTGYAKNLDDGSVEVV 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 3679999999999988854
No 53
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=24.53 E-value=40 Score=27.61 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=14.8
Q ss_pred eEEEEEEEccCCeEEEE
Q 023589 252 ALKGAHYDFVNGKFELW 268 (280)
Q Consensus 252 ~V~G~vYDi~tG~v~~~ 268 (280)
..|||-||+.||++..+
T Consensus 77 p~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 77 WYHGWTYRLDDGKLVTI 93 (136)
T ss_pred cCCccEEeCCCccEEEc
Confidence 48999999999998754
No 54
>PRK14425 acylphosphatase; Provisional
Probab=24.16 E-value=65 Score=24.97 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=16.1
Q ss_pred eeEEEEEEEccCCeEEEE
Q 023589 251 LALKGAHYDFVNGKFELW 268 (280)
Q Consensus 251 l~V~G~vYDi~tG~v~~~ 268 (280)
+.|.||+.+..+|.|+.+
T Consensus 32 ~gl~G~V~N~~dGsVei~ 49 (94)
T PRK14425 32 LGLTGWVRNESDGSVTAL 49 (94)
T ss_pred hCCEEEEEECCCCeEEEE
Confidence 669999999999999865
No 55
>PRK14449 acylphosphatase; Provisional
Probab=23.74 E-value=70 Score=24.48 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.5
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|.|+.+
T Consensus 28 ~lgl~G~V~N~~dG~Vei~ 46 (90)
T PRK14449 28 SLGITGYAENLYDGSVEVV 46 (90)
T ss_pred HcCCEEEEEECCCCeEEEE
Confidence 3679999999999998865
No 56
>PRK14436 acylphosphatase; Provisional
Probab=23.63 E-value=69 Score=24.68 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.4
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|.|+.+
T Consensus 29 ~l~l~G~V~N~~dG~Vei~ 47 (91)
T PRK14436 29 KLGVNGWVRNLPDGSVEAV 47 (91)
T ss_pred HcCCEEEEEECCCCcEEEE
Confidence 3679999999999998865
No 57
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=23.51 E-value=1e+02 Score=30.68 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=12.9
Q ss_pred hcCCCCceEEeeccCC
Q 023589 99 AKGQSPKFLVFACSDS 114 (280)
Q Consensus 99 a~gQ~P~~lvitCsDS 114 (280)
.+...|.++-|+|.|=
T Consensus 363 ~~s~d~~~laVAc~Di 378 (429)
T cd00256 363 ETSVDPIILAVACHDI 378 (429)
T ss_pred hcCCCcceeehhhhhH
Confidence 3566899999999984
No 58
>PRK14420 acylphosphatase; Provisional
Probab=23.21 E-value=69 Score=24.48 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=15.8
Q ss_pred eeEEEEEEEccCCeEEEE
Q 023589 251 LALKGAHYDFVNGKFELW 268 (280)
Q Consensus 251 l~V~G~vYDi~tG~v~~~ 268 (280)
+.|.||+.+..+|.|+..
T Consensus 28 ~gl~G~V~N~~dG~Vei~ 45 (91)
T PRK14420 28 RKLTGWVKNRDDGTVEIE 45 (91)
T ss_pred cCCEEEEEECCCCcEEEE
Confidence 669999999999988854
No 59
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=23.04 E-value=31 Score=26.62 Aligned_cols=15 Identities=13% Similarity=0.383 Sum_probs=12.8
Q ss_pred eEEEEEEEccCCeEE
Q 023589 252 ALKGAHYDFVNGKFE 266 (280)
Q Consensus 252 ~V~G~vYDi~tG~v~ 266 (280)
..|||.||+.||+..
T Consensus 68 p~Hg~~Fdl~tG~~~ 82 (105)
T TIGR02378 68 PLHKRNFRLEDGRCL 82 (105)
T ss_pred CcCCCEEEcCCcccc
Confidence 489999999999754
No 60
>PRK14434 acylphosphatase; Provisional
Probab=23.04 E-value=76 Score=24.51 Aligned_cols=19 Identities=16% Similarity=0.403 Sum_probs=16.4
Q ss_pred cee-EEEEEEEccCCeEEEE
Q 023589 250 TLA-LKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~-V~G~vYDi~tG~v~~~ 268 (280)
++. |.||+.+..+|.|+..
T Consensus 27 ~lg~l~G~V~N~~dGsVei~ 46 (92)
T PRK14434 27 EIGDIYGRVWNNDDGTVEIL 46 (92)
T ss_pred HcCCcEEEEEECCCCCEEEE
Confidence 478 9999999999988754
No 61
>PTZ00119 40S ribosomal protein S15; Provisional
Probab=22.97 E-value=5e+02 Score=24.59 Aligned_cols=66 Identities=20% Similarity=0.153 Sum_probs=39.5
Q ss_pred HHhHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCC
Q 023589 52 AAKIKQITADLEAAGS--RDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVC 117 (280)
Q Consensus 52 ~~~~~~~~~~l~~~~~--~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~la~gQ~P~~lvitCsDSRV~ 117 (280)
+++|..||.-|+.... ....-+-.|+..-++..+--..++++.|..+.+.=.=+-+.|+-+|||=+
T Consensus 135 TeRI~~LTeHLk~hkKD~~SrRGLlkLV~KRRKLLkYLKrkD~erY~~lIkkLGLRkv~f~~~~~~~~ 202 (302)
T PTZ00119 135 TEKILNLRAHLILRCKDHPKKRTMSILLARRQKLMKYLYKTDFELYKHTCNLLKIKCILFAIPDSRDR 202 (302)
T ss_pred HHHHHHHHHHHHhCCCccHhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCceEEeecccccCh
Confidence 4455555555555331 12234555555555555444455777787776555556788999999865
No 62
>PRK14421 acylphosphatase; Provisional
Probab=22.84 E-value=71 Score=25.17 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.4
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+-+..+|.|+..
T Consensus 29 ~lgL~G~V~N~~dG~Vei~ 47 (99)
T PRK14421 29 ALGLEGWVRNRRDGSVEAL 47 (99)
T ss_pred HhCCEEEEEECCCCEEEEE
Confidence 3679999999999998865
No 63
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3.6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
Probab=22.73 E-value=72 Score=24.14 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.0
Q ss_pred eeEEEEEEEccCCeEEEE
Q 023589 251 LALKGAHYDFVNGKFELW 268 (280)
Q Consensus 251 l~V~G~vYDi~tG~v~~~ 268 (280)
+.|.||+.+..+|.|+.+
T Consensus 30 ~gl~G~V~N~~dg~V~i~ 47 (91)
T PF00708_consen 30 LGLTGWVRNLPDGSVEIE 47 (91)
T ss_dssp TT-EEEEEE-TTSEEEEE
T ss_pred hCCceEEEECCCCEEEEE
Confidence 569999999999998865
No 64
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.72 E-value=1.4e+02 Score=22.42 Aligned_cols=23 Identities=9% Similarity=0.381 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHhhc--ccCCchh
Q 023589 27 NDAYEDAIAGLTKLLS--EKSDLEG 49 (280)
Q Consensus 27 ~~~~~~~~~~~~~~~~--~~~~~~~ 49 (280)
+.|||+|+++|.+++. +.++++.
T Consensus 5 ~~sfEeal~~Le~IV~~LE~gdl~L 29 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLDNETVSL 29 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCH
Confidence 4589999999987776 4455554
No 65
>PRK14444 acylphosphatase; Provisional
Probab=22.61 E-value=70 Score=24.67 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.2
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|.|+..
T Consensus 29 ~lgl~G~V~N~~dG~Vei~ 47 (92)
T PRK14444 29 EAGVKGWVRNLSDGRVEAV 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 3679999999999988854
No 66
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.60 E-value=1.5e+02 Score=22.27 Aligned_cols=22 Identities=27% Similarity=0.444 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHhhc--ccCCchh
Q 023589 28 DAYEDAIAGLTKLLS--EKSDLEG 49 (280)
Q Consensus 28 ~~~~~~~~~~~~~~~--~~~~~~~ 49 (280)
.|||+|+.+|..++. |+++++.
T Consensus 6 ~sfEe~l~~LE~IV~~LE~~~l~L 29 (75)
T PRK14064 6 KTFEEAIAELETIVEALENGSASL 29 (75)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCH
Confidence 389999999887776 4445544
No 67
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=22.50 E-value=35 Score=27.02 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=13.1
Q ss_pred eEEEEEEEccCCeEE
Q 023589 252 ALKGAHYDFVNGKFE 266 (280)
Q Consensus 252 ~V~G~vYDi~tG~v~ 266 (280)
..|||.||+.||+..
T Consensus 67 p~H~a~Fdl~tG~~~ 81 (106)
T COG2146 67 PLHGARFDLRTGECL 81 (106)
T ss_pred CccCCEEEcCCCcee
Confidence 589999999999854
No 68
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=22.34 E-value=49 Score=26.73 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=10.6
Q ss_pred eEEEeccCCCCc
Q 023589 165 NIVVIGHSCCGG 176 (280)
Q Consensus 165 ~IVV~GHt~CGa 176 (280)
+|+|+||++||=
T Consensus 1 ~i~~vG~~~~GK 12 (167)
T cd04160 1 SVLILGLDNAGK 12 (167)
T ss_pred CEEEEecCCCCH
Confidence 489999999994
No 69
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=22.25 E-value=31 Score=26.66 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.9
Q ss_pred eEEEEEEEccCCeEE
Q 023589 252 ALKGAHYDFVNGKFE 266 (280)
Q Consensus 252 ~V~G~vYDi~tG~v~ 266 (280)
..|||.||+.||+..
T Consensus 67 p~Hg~~Fdl~tG~~~ 81 (103)
T cd03529 67 PLYKQHFSLKTGRCL 81 (103)
T ss_pred CCCCCEEEcCCCCcc
Confidence 479999999999853
No 70
>PRK14443 acylphosphatase; Provisional
Probab=22.05 E-value=81 Score=24.57 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=17.1
Q ss_pred ceeEEEEEEEccCCeEEEEe
Q 023589 250 TLALKGAHYDFVNGKFELWD 269 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~~ 269 (280)
++.|.||+-+..+|.|+.+-
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (93)
T PRK14443 29 KYDISGTVKNLDDGSVEIHA 48 (93)
T ss_pred HcCCEEEEEECCCCEEEEEE
Confidence 36799999999999998753
No 71
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=21.85 E-value=3.4e+02 Score=20.77 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=30.8
Q ss_pred hhhhhHHHHHHHHHHhh-cccCCchhhHHHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhccCChhhHhhhhc
Q 023589 25 MANDAYEDAIAGLTKLL-SEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAK 100 (280)
Q Consensus 25 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~la~ 100 (280)
-+.+.|+++.+.+..+= .+..++...-...+..+.+.+....++.++..+.|......|....+..+++++..|..
T Consensus 10 yg~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~p~s~evq~l~~~~~~~~~~~~~~~~~~~~~l~~ 86 (118)
T PF07739_consen 10 YGDEAYAESEERLASLSKEEWQELQKEWDELFAELAALMEEGVDPDSPEVQELAERWMELINQFTGGDPELLRGLAQ 86 (118)
T ss_dssp -----------------------TTHHHHHHHHHHHHHHHHT--TT-HHHHHHHHHHHHHHHHSS---HHHHHHHHH
T ss_pred HChHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34445555555543222 23334444444444445444444433445678888888888888666667777776653
No 72
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=21.74 E-value=29 Score=27.43 Aligned_cols=15 Identities=20% Similarity=0.368 Sum_probs=12.9
Q ss_pred eEEEEEEEccCCeEE
Q 023589 252 ALKGAHYDFVNGKFE 266 (280)
Q Consensus 252 ~V~G~vYDi~tG~v~ 266 (280)
..|||.||+.||+..
T Consensus 71 P~H~~~Fdl~TG~~~ 85 (108)
T PRK09511 71 PLKKQRFRLSDGLCM 85 (108)
T ss_pred CCCCCEEECCCcccC
Confidence 489999999999753
No 73
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=21.58 E-value=53 Score=28.49 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.2
Q ss_pred ceEEEeccCCCCc
Q 023589 164 ENIVVIGHSCCGG 176 (280)
Q Consensus 164 ~~IVV~GHt~CGa 176 (280)
++|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 4799999999993
No 74
>PRK14422 acylphosphatase; Provisional
Probab=21.32 E-value=75 Score=24.57 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=16.4
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|.|+..
T Consensus 31 ~~gl~G~V~N~~dG~Vei~ 49 (93)
T PRK14422 31 ELGLTGYAANLADGRVQVV 49 (93)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 3779999999999988854
No 75
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=21.13 E-value=62 Score=29.65 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=12.5
Q ss_pred cceEEEeccCCCCc
Q 023589 163 VENIVVIGHSCCGG 176 (280)
Q Consensus 163 V~~IVV~GHt~CGa 176 (280)
.++|.|+||.++|=
T Consensus 2 ~Rni~ivGh~~~GK 15 (267)
T cd04169 2 RRTFAIISHPDAGK 15 (267)
T ss_pred ccEEEEEcCCCCCH
Confidence 57999999999994
No 76
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=20.90 E-value=36 Score=27.45 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=13.9
Q ss_pred eeEEEEEEEccCCeEE
Q 023589 251 LALKGAHYDFVNGKFE 266 (280)
Q Consensus 251 l~V~G~vYDi~tG~v~ 266 (280)
-..|||-||+.||+..
T Consensus 70 CP~Hg~~FDLrTG~~~ 85 (107)
T cd03473 70 CTKHNWKLDVSTMKYV 85 (107)
T ss_pred eCCCCCEEEcCCCCCc
Confidence 3589999999999875
No 77
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=20.85 E-value=39 Score=26.16 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=12.7
Q ss_pred eeEEEEEEEccCCeE
Q 023589 251 LALKGAHYDFVNGKF 265 (280)
Q Consensus 251 l~V~G~vYDi~tG~v 265 (280)
-..|||.||+.||..
T Consensus 61 CP~Hg~~Fdl~~G~~ 75 (108)
T cd03474 61 CRAHLWQFDADTGEG 75 (108)
T ss_pred eCCcCCEEECCCccc
Confidence 348999999999974
No 78
>PRK14433 acylphosphatase; Provisional
Probab=20.81 E-value=79 Score=24.12 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=16.4
Q ss_pred ceeEEEEEEEccCCeEEEE
Q 023589 250 TLALKGAHYDFVNGKFELW 268 (280)
Q Consensus 250 ~l~V~G~vYDi~tG~v~~~ 268 (280)
++.|.||+.+..+|.|+.+
T Consensus 26 ~~~l~G~V~N~~dG~Vei~ 44 (87)
T PRK14433 26 ELGLSGYAENLSDGRVEVV 44 (87)
T ss_pred HcCCEEEEEECCCCCEEEE
Confidence 3679999999999988865
No 79
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=20.46 E-value=38 Score=26.37 Aligned_cols=15 Identities=27% Similarity=0.328 Sum_probs=12.9
Q ss_pred eEEEEEEEccCCeEE
Q 023589 252 ALKGAHYDFVNGKFE 266 (280)
Q Consensus 252 ~V~G~vYDi~tG~v~ 266 (280)
..|||.||+.||+..
T Consensus 63 p~Hg~~Fd~~tG~~~ 77 (106)
T PRK09965 63 PLHAASFCLRTGKAL 77 (106)
T ss_pred CCCCCEEEcCCCCee
Confidence 489999999999853
No 80
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=20.36 E-value=69 Score=27.19 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=13.5
Q ss_pred cCcceEEEeccCCCCc
Q 023589 161 LKVENIVVIGHSCCGG 176 (280)
Q Consensus 161 L~V~~IVV~GHt~CGa 176 (280)
=++..|+|+|+++||=
T Consensus 39 ~~~~~I~iiG~~g~GK 54 (204)
T cd01878 39 SGIPTVALVGYTNAGK 54 (204)
T ss_pred cCCCeEEEECCCCCCH
Confidence 3467999999999993
No 81
>PRK14435 acylphosphatase; Provisional
Probab=20.32 E-value=82 Score=24.17 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=16.5
Q ss_pred eeEEEEEEEccCCeEEEEe
Q 023589 251 LALKGAHYDFVNGKFELWD 269 (280)
Q Consensus 251 l~V~G~vYDi~tG~v~~~~ 269 (280)
+.|.||+.+..+|.|+..-
T Consensus 28 ~gl~G~V~N~~dG~Vei~~ 46 (90)
T PRK14435 28 LGVKGYVMNMDDGSVFIHA 46 (90)
T ss_pred hCCEEEEEECCCCCEEEEE
Confidence 6699999999999998653
No 82
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=20.31 E-value=32 Score=26.12 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=12.4
Q ss_pred eEEEEEEEccCCeE
Q 023589 252 ALKGAHYDFVNGKF 265 (280)
Q Consensus 252 ~V~G~vYDi~tG~v 265 (280)
..|||.||+.||.+
T Consensus 62 p~Hg~~Fdl~~G~~ 75 (98)
T cd03530 62 PLHNWVIDLETGEA 75 (98)
T ss_pred CCCCCEEECCCCCC
Confidence 48999999999975
No 83
>PRK14437 acylphosphatase; Provisional
Probab=20.24 E-value=77 Score=25.44 Aligned_cols=19 Identities=32% Similarity=0.406 Sum_probs=16.5
Q ss_pred eeEEEEEEEccCCeEEEEe
Q 023589 251 LALKGAHYDFVNGKFELWD 269 (280)
Q Consensus 251 l~V~G~vYDi~tG~v~~~~ 269 (280)
+.|.||+.+..+|.|+.+-
T Consensus 49 lgL~G~V~N~~dG~Vei~~ 67 (109)
T PRK14437 49 LQLTGWVKNLSHGDVELVA 67 (109)
T ss_pred hCCeEEEEECCCCCEEEEE
Confidence 6699999999999988653
No 84
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=20.17 E-value=2.1e+02 Score=23.52 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=33.5
Q ss_pred CCcEEEEeccCCcCCCCCCccccchhHHHHHHHHhcCcceEEEeccCCCCcccc
Q 023589 126 PGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKG 179 (280)
Q Consensus 126 pGe~FVvRNaGN~V~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHt~CGav~a 179 (280)
+||..+.++--|..... .|+.-+...|+++|+|+|-.-.+-|.+
T Consensus 85 ~~~~vi~K~~~saf~~t----------~L~~~L~~~gi~~vil~G~~t~~CV~~ 128 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT----------DLDEILRKRGIDTVILCGVATDVCVLA 128 (174)
T ss_dssp TTSEEEEESSSSTTTTS----------SHHHHHHHTTESEEEEEEESTTTHHHH
T ss_pred cccceEEeecccccccc----------cccccccccccceEEEcccccCcEEeh
Confidence 49999999866665321 266668889999999999887777654
Done!