BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023590
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
Cellular Modulator Of Immune Recognition Protein
Length = 80
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 57 CRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVE 116
CRIC +G+ + LI+PC C G+ FVH+ACL W + C CK +F + +
Sbjct: 18 CRIC-HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRC---CELCKYEFIMETK 73
Query: 117 LFEDNS 122
L +S
Sbjct: 74 LSGPSS 79
>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
Length = 60
Score = 37.4 bits (85), Expect = 0.008, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 49 IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCK 108
+E+ +P C IC E G +E C C G + VHR+CL W ++ A C C
Sbjct: 1 MEDEDVPVCWICNEELG---NERFRACGCTGELENVHRSCLSTWLTISRNTA---CQICG 54
Query: 109 AQFHLR 114
++ R
Sbjct: 55 VVYNTR 60
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 227 CCYHGYSKDLAETLPYSYQEGAHKGKIGFLLSSRNLCYAF 266
Y+ K+ A +PY ++G +G +GF LS ++ Y F
Sbjct: 38 AAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGF 77
>pdb|2WFF|1 Chain 1, Equine Rhinitis A Virus
pdb|2WS9|1 Chain 1, Equine Rhinitis A Virus At Low Ph
Length = 246
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 213 CCHFCHSWYSLW--FPCCYHGYSKDLAETLPYSYQEGAHKGKIGFLLSS----RNLCYAF 266
C F + S+W P Y+G+ E Y++ GAH G I LL+S + CY
Sbjct: 153 ACGFSVPYTSMWRVVPVFYNGWGAPTKEKATYNWLPGAHFGSI--LLTSDAHDKGGCYLR 210
Query: 267 Y 267
Y
Sbjct: 211 Y 211
>pdb|2XBO|1 Chain 1, Equine Rhinitis A Virus In Complex With Its Sialic Acid
Receptor
Length = 248
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 213 CCHFCHSWYSLW--FPCCYHGYSKDLAETLPYSYQEGAHKGKIGFLLSS----RNLCYAF 266
C F + S+W P Y+G+ E Y++ GAH G I LL+S + CY
Sbjct: 153 ACGFSVPYTSMWRVVPVFYNGWGAPTKEKATYNWLPGAHFGSI--LLTSDAHDKGGCYLR 210
Query: 267 Y 267
Y
Sbjct: 211 Y 211
>pdb|2L38|A Chain A, R29q Sticholysin Ii Mutant
Length = 175
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 192 VGSLGLFPCIYGSMLCPGYRFCCHFCHSWYSLWFPCCYH--------GYSKDLAETLPYS 243
G++ F S G F F ++WYS W+ + G +DL PY
Sbjct: 82 TGAVAAFAYYMSSGNTLGVMFSVPFDYNWYSNWWDVKIYSGKRRADQGMYEDLYYGNPYR 141
Query: 244 YQEGAHKGKIGFLLSSRNLC 263
G H+ +G+ L + +
Sbjct: 142 GDNGWHEKNLGYGLRMKGIM 161
>pdb|1GWY|A Chain A, Crystal Structure Of The Water-Soluble State Of The Pore-
Forming Cytolysin Sticholysin Ii
pdb|1GWY|B Chain B, Crystal Structure Of The Water-Soluble State Of The Pore-
Forming Cytolysin Sticholysin Ii
pdb|1O71|A Chain A, Crystal Structure Of The Water-Soluble State Of The
Pore-Forming Cytolysin Sticholysin Ii Complexed With
Glycerol
pdb|1O71|B Chain B, Crystal Structure Of The Water-Soluble State Of The
Pore-Forming Cytolysin Sticholysin Ii Complexed With
Glycerol
pdb|1O72|A Chain A, Crystal Structure Of The Water-soluble State Of The
Pore-forming Cytolysin Sticholysin Ii Complexed With
Phosphorylcholine
pdb|1O72|B Chain B, Crystal Structure Of The Water-soluble State Of The
Pore-forming Cytolysin Sticholysin Ii Complexed With
Phosphorylcholine
Length = 175
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 192 VGSLGLFPCIYGSMLCPGYRFCCHFCHSWYSLWFPCCYH--------GYSKDLAETLPYS 243
G++ F S G F F ++WYS W+ + G +DL PY
Sbjct: 82 TGAVAAFAYYMSSGNTLGVMFSVPFDYNWYSNWWDVKIYSGKRRADQGMYEDLYYGNPYR 141
Query: 244 YQEGAHKGKIGFLLSSRNLC 263
G H+ +G+ L + +
Sbjct: 142 GDNGWHEKNLGYGLRMKGIM 161
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 57 CRICLENDGEPDDEL-ISPCMCKGTQQFVHRACLDHWRSVKE 97
C +CLE D +P DEL I PC + HR CL W V++
Sbjct: 18 CAVCLE-DFKPRDELGICPC-----KHAFHRKCLIKWLEVRK 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.144 0.491
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,460,395
Number of Sequences: 62578
Number of extensions: 338008
Number of successful extensions: 557
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 9
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)