Query 023590
Match_columns 280
No_of_seqs 202 out of 791
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023590.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023590hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 1.4E-18 4.7E-23 126.7 2.9 57 52-114 4-60 (60)
2 2d8s_A Cellular modulator of i 99.6 9.9E-17 3.4E-21 122.9 4.5 67 50-120 11-77 (80)
3 2kiz_A E3 ubiquitin-protein li 97.7 2.4E-05 8.1E-10 55.9 3.5 55 50-114 10-64 (69)
4 2l0b_A E3 ubiquitin-protein li 97.5 3.9E-05 1.3E-09 58.4 3.0 54 49-112 35-88 (91)
5 1iym_A EL5; ring-H2 finger, ub 97.5 2.5E-05 8.7E-10 53.3 1.6 51 53-112 4-54 (55)
6 2ect_A Ring finger protein 126 97.5 3.9E-05 1.3E-09 56.1 2.4 53 52-114 13-65 (78)
7 1x4j_A Ring finger protein 38; 97.5 3.9E-05 1.3E-09 55.9 2.2 51 52-112 21-71 (75)
8 2ep4_A Ring finger protein 24; 97.5 8.7E-05 3E-09 53.6 3.8 52 52-113 13-64 (74)
9 1v87_A Deltex protein 2; ring- 97.3 5.3E-05 1.8E-09 59.2 0.9 58 53-115 24-96 (114)
10 2ecm_A Ring finger and CHY zin 97.3 0.00013 4.5E-09 49.5 2.6 51 52-112 3-54 (55)
11 2ysl_A Tripartite motif-contai 97.2 0.0002 7E-09 51.3 2.7 54 51-114 17-70 (73)
12 2ecl_A Ring-box protein 2; RNF 97.1 0.00018 6.1E-09 53.8 2.5 52 54-114 15-77 (81)
13 2ct2_A Tripartite motif protei 97.1 0.00043 1.5E-08 51.1 3.9 56 52-114 13-69 (88)
14 2ysj_A Tripartite motif-contai 97.0 0.00081 2.8E-08 47.1 4.5 47 51-107 17-63 (63)
15 2ea6_A Ring finger protein 4; 96.9 0.00021 7.4E-09 50.3 1.1 51 52-112 13-67 (69)
16 2d8t_A Dactylidin, ring finger 96.9 0.00028 9.5E-09 50.9 1.5 50 52-114 13-62 (71)
17 2csy_A Zinc finger protein 183 96.8 0.00084 2.9E-08 49.4 3.7 48 52-112 13-60 (81)
18 2ecw_A Tripartite motif-contai 96.8 0.0015 5.1E-08 47.4 4.8 55 52-114 17-72 (85)
19 2yur_A Retinoblastoma-binding 96.7 0.00081 2.8E-08 48.9 3.0 50 52-112 13-63 (74)
20 1chc_A Equine herpes virus-1 r 96.6 0.0015 5.1E-08 46.1 3.4 50 53-115 4-54 (68)
21 2ecn_A Ring finger protein 141 96.5 0.00044 1.5E-08 49.4 0.1 49 52-114 13-61 (70)
22 2ecv_A Tripartite motif-contai 96.4 0.0028 9.7E-08 45.9 4.2 55 52-114 17-72 (85)
23 3ng2_A RNF4, snurf, ring finge 96.4 0.00053 1.8E-08 48.7 -0.1 54 51-114 7-64 (71)
24 2djb_A Polycomb group ring fin 96.3 0.0021 7.2E-08 46.3 2.8 50 52-114 13-63 (72)
25 2ecy_A TNF receptor-associated 96.3 0.0016 5.6E-08 46.0 2.2 51 51-113 12-62 (66)
26 2xeu_A Ring finger protein 4; 96.3 0.00054 1.8E-08 47.5 -0.5 52 53-114 2-57 (64)
27 3dpl_R Ring-box protein 1; ubi 96.2 0.0027 9.3E-08 50.4 3.2 52 53-114 36-102 (106)
28 2ecj_A Tripartite motif-contai 96.0 0.0049 1.7E-07 41.9 3.3 46 52-107 13-58 (58)
29 1e4u_A Transcriptional repress 95.7 0.0069 2.3E-07 45.4 3.3 55 52-114 9-63 (78)
30 4a0k_B E3 ubiquitin-protein li 95.7 0.0023 7.8E-08 52.0 0.6 54 53-114 47-113 (117)
31 3ztg_A E3 ubiquitin-protein li 95.6 0.0058 2E-07 45.7 2.6 51 51-112 10-61 (92)
32 2ct0_A Non-SMC element 1 homol 95.5 0.0051 1.7E-07 46.2 1.8 53 53-115 14-66 (74)
33 2y1n_A E3 ubiquitin-protein li 95.5 0.0098 3.4E-07 57.3 4.2 52 52-115 330-381 (389)
34 1t1h_A Gspef-atpub14, armadill 95.4 0.0064 2.2E-07 44.0 2.0 51 52-114 6-56 (78)
35 1jm7_A BRCA1, breast cancer ty 95.3 0.0084 2.9E-07 46.0 2.6 50 54-113 21-70 (112)
36 3k1l_B Fancl; UBC, ring, RWD, 95.1 0.022 7.5E-07 54.7 5.2 59 52-114 306-374 (381)
37 3lrq_A E3 ubiquitin-protein li 95.1 0.007 2.4E-07 46.5 1.5 51 52-114 20-71 (100)
38 4ayc_A E3 ubiquitin-protein li 95.0 0.0049 1.7E-07 50.0 0.5 46 55-113 54-99 (138)
39 3fl2_A E3 ubiquitin-protein li 94.6 0.011 3.6E-07 46.9 1.6 48 54-113 52-99 (124)
40 2y43_A E3 ubiquitin-protein li 94.6 0.0093 3.2E-07 45.3 1.1 47 54-113 22-69 (99)
41 2ckl_B Ubiquitin ligase protei 94.6 0.0079 2.7E-07 49.9 0.7 48 54-113 54-102 (165)
42 1g25_A CDK-activating kinase a 94.5 0.0086 3E-07 42.0 0.6 52 54-114 3-56 (65)
43 2egp_A Tripartite motif-contai 94.5 0.0056 1.9E-07 44.2 -0.4 55 52-114 10-66 (79)
44 1z6u_A NP95-like ring finger p 93.9 0.018 6.2E-07 47.8 1.6 49 54-114 78-126 (150)
45 3hct_A TNF receptor-associated 93.8 0.028 9.6E-07 44.2 2.4 50 52-113 16-65 (118)
46 4ap4_A E3 ubiquitin ligase RNF 93.7 0.0082 2.8E-07 46.8 -0.9 53 52-114 5-61 (133)
47 1rmd_A RAG1; V(D)J recombinati 93.6 0.024 8.4E-07 44.1 1.6 49 54-114 23-71 (116)
48 2ckl_A Polycomb group ring fin 93.2 0.023 8E-07 43.8 0.9 48 53-113 14-62 (108)
49 4ic3_A E3 ubiquitin-protein li 92.9 0.0046 1.6E-07 45.2 -3.3 47 53-116 23-70 (74)
50 3knv_A TNF receptor-associated 92.9 0.019 6.5E-07 47.2 0.0 51 50-112 27-77 (141)
51 3l11_A E3 ubiquitin-protein li 91.9 0.0094 3.2E-07 46.5 -2.9 48 54-113 15-62 (115)
52 2ea5_A Cell growth regulator w 91.5 0.19 6.6E-06 36.2 4.0 51 52-118 13-63 (68)
53 1wgm_A Ubiquitin conjugation f 91.2 0.14 4.8E-06 39.6 3.2 52 50-113 18-69 (98)
54 2vje_A E3 ubiquitin-protein li 91.2 0.088 3E-06 37.4 1.9 51 54-117 8-61 (64)
55 2vje_B MDM4 protein; proto-onc 91.1 0.088 3E-06 37.3 1.8 53 52-117 5-60 (63)
56 4ap4_A E3 ubiquitin ligase RNF 90.3 0.051 1.7E-06 42.2 -0.1 53 52-114 70-126 (133)
57 2kr4_A Ubiquitin conjugation f 88.8 0.25 8.6E-06 36.9 2.8 51 51-114 11-61 (85)
58 1jm7_B BARD1, BRCA1-associated 88.7 0.078 2.7E-06 41.5 -0.1 46 53-113 21-67 (117)
59 2ecg_A Baculoviral IAP repeat- 88.6 0.044 1.5E-06 39.8 -1.5 46 53-115 24-70 (75)
60 3nw0_A Non-structural maintena 88.0 0.21 7.2E-06 44.7 2.2 52 52-114 178-230 (238)
61 2c2l_A CHIP, carboxy terminus 87.7 0.26 8.9E-06 42.8 2.6 50 52-113 206-255 (281)
62 2kre_A Ubiquitin conjugation f 86.9 0.32 1.1E-05 37.7 2.4 52 49-113 24-75 (100)
63 2yho_A E3 ubiquitin-protein li 85.4 0.048 1.7E-06 40.5 -2.9 52 53-120 17-68 (79)
64 3hcs_A TNF receptor-associated 83.8 0.39 1.3E-05 39.6 1.6 50 52-113 16-65 (170)
65 1weu_A Inhibitor of growth fam 81.4 1.6 5.5E-05 33.8 4.2 52 49-109 31-84 (91)
66 3t6p_A Baculoviral IAP repeat- 80.9 0.15 5.1E-06 48.1 -2.2 48 52-116 293-341 (345)
67 1bor_A Transcription factor PM 80.9 0.36 1.2E-05 33.1 0.3 46 53-114 5-50 (56)
68 1weo_A Cellulose synthase, cat 79.4 1.8 6.2E-05 34.0 3.9 55 52-112 14-69 (93)
69 2yu4_A E3 SUMO-protein ligase 77.2 1.5 5E-05 33.1 2.8 52 51-110 4-59 (94)
70 1wim_A KIAA0161 protein; ring 77.0 1 3.5E-05 33.6 1.8 55 52-113 3-64 (94)
71 2lri_C Autoimmune regulator; Z 76.8 0.68 2.3E-05 33.7 0.7 53 49-110 7-59 (66)
72 2f42_A STIP1 homology and U-bo 71.2 1.5 5.2E-05 37.7 1.6 53 50-114 102-154 (179)
73 2ku3_A Bromodomain-containing 66.4 3.3 0.00011 30.4 2.4 55 49-109 11-65 (71)
74 2l43_A N-teminal domain from h 64.2 3.8 0.00013 31.2 2.4 54 51-110 22-75 (88)
75 1wen_A Inhibitor of growth fam 60.2 4.7 0.00016 29.5 2.3 51 50-109 12-64 (71)
76 2yt5_A Metal-response element- 57.6 3.3 0.00011 29.2 1.0 57 51-110 3-61 (66)
77 1wev_A Riken cDNA 1110020M19; 51.7 1 3.6E-05 34.2 -2.7 59 53-114 15-76 (88)
78 3htk_C E3 SUMO-protein ligase 48.1 11 0.00038 34.5 3.1 53 51-114 178-233 (267)
79 3ql9_A Transcriptional regulat 45.7 12 0.0004 30.8 2.6 50 51-108 54-109 (129)
80 2ysm_A Myeloid/lymphoid or mix 40.4 5.2 0.00018 31.0 -0.3 40 50-94 3-42 (111)
81 2vnf_A ING 4, P29ING4, inhibit 37.7 3.8 0.00013 28.9 -1.4 50 51-109 7-58 (60)
82 3v43_A Histone acetyltransfera 36.4 12 0.00039 29.3 1.1 35 53-90 4-42 (112)
83 2bay_A PRE-mRNA splicing facto 35.5 13 0.00044 26.0 1.2 47 55-114 4-51 (61)
84 2l5u_A Chromodomain-helicase-D 34.3 8.1 0.00028 27.2 -0.1 49 52-109 9-57 (61)
85 2lv9_A Histone-lysine N-methyl 32.9 13 0.00045 28.5 0.9 49 53-109 27-75 (98)
86 3u5n_A E3 ubiquitin-protein li 31.6 4.7 0.00016 34.6 -2.1 51 53-112 6-56 (207)
87 2jmi_A Protein YNG1, ING1 homo 29.6 11 0.00038 29.0 -0.0 50 51-109 23-75 (90)
88 3o36_A Transcription intermedi 29.1 6.9 0.00023 32.8 -1.4 49 53-110 3-51 (184)
89 2g6q_A Inhibitor of growth pro 28.0 6.9 0.00024 27.9 -1.4 50 51-109 8-59 (62)
90 2yql_A PHD finger protein 21A; 27.5 4.6 0.00016 27.9 -2.4 51 50-109 5-55 (56)
91 1we9_A PHD finger family prote 26.9 8.9 0.0003 26.8 -0.9 55 51-109 3-57 (64)
92 3c6w_A P28ING5, inhibitor of g 23.7 9.3 0.00032 26.9 -1.4 49 52-109 7-57 (59)
93 4gne_A Histone-lysine N-methyl 23.5 26 0.00089 27.6 1.1 36 49-90 10-45 (107)
94 2lbm_A Transcriptional regulat 23.3 37 0.0013 28.2 2.0 50 51-108 60-115 (142)
95 2ri7_A Nucleosome-remodeling f 23.1 12 0.00041 30.9 -1.0 54 52-110 6-59 (174)
96 3i2d_A E3 SUMO-protein ligase 22.5 26 0.00088 33.5 1.0 44 68-114 256-301 (371)
97 3o70_A PHD finger protein 13; 22.0 18 0.0006 26.1 -0.2 52 49-108 14-65 (68)
98 2k16_A Transcription initiatio 21.4 31 0.001 24.7 1.0 54 52-111 16-69 (75)
99 1f62_A Transcription factor WS 20.4 19 0.00065 23.9 -0.3 48 56-109 2-49 (51)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.72 E-value=1.4e-18 Score=126.73 Aligned_cols=57 Identities=32% Similarity=0.790 Sum_probs=49.6
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.+.+.||||+++. ++++++||+|+||+++||+.||++|+..++ ...||+|+++|+++
T Consensus 4 ~~~~~CrIC~~~~---~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~---~~~C~~C~~~~~~r 60 (60)
T 1vyx_A 4 EDVPVCWICNEEL---GNERFRACGCTGELENVHRSCLSTWLTISR---NTACQICGVVYNTR 60 (60)
T ss_dssp CSCCEETTTTEEC---SCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---CSBCTTTCCBCCCC
T ss_pred CCCCEeEEeecCC---CCceecCcCCCCchhhhHHHHHHHHHHhCC---CCccCCCCCeeecC
Confidence 4567999999753 457999999999999999999999999875 37999999999874
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=9.9e-17 Score=122.87 Aligned_cols=67 Identities=34% Similarity=0.788 Sum_probs=56.4
Q ss_pred CCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeeeeeeecc
Q 023590 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELFED 120 (280)
Q Consensus 50 ~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~~~~~~ 120 (280)
.+.+...||||+++. +++++++.||+|+|+++++|+.||++|+..++ ...|++|+++|.++.+.+++
T Consensus 11 ~~~~~~~C~IC~~~~-~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---~~~CplCr~~~~~~~~~~P~ 77 (80)
T 2d8s_A 11 TPSSQDICRICHCEG-DDESPLITPCHCTGSLHFVHQACLQQWIKSSD---TRCCELCKYEFIMETKLSGP 77 (80)
T ss_dssp CCTTSCCCSSSCCCC-CSSSCEECSSSCCSSSCCEETTHHHHHHHHHC---CSBCSSSCCBCCCCCCSCCC
T ss_pred CCCCCCCCeEcCccc-cCCCeeEeccccCCcCCeeCHHHHHHHHhhCC---CCCCCCCCCeeecCcccCCC
Confidence 345567999999754 45678999999999999999999999999864 46999999999998777654
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.70 E-value=2.4e-05 Score=55.94 Aligned_cols=55 Identities=29% Similarity=0.711 Sum_probs=40.4
Q ss_pred CCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 50 ~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.......|.||++.-.+...+.+.||. +..|..|+.+|+..+ ..|++|+.++...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITN-----KKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHC-----SBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcC-----CCCcCcCccccCc
Confidence 345567899999754333445667864 568999999999864 4799999887754
No 4
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.55 E-value=3.9e-05 Score=58.43 Aligned_cols=54 Identities=26% Similarity=0.667 Sum_probs=39.4
Q ss_pred cCCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 49 IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 49 ~~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
........|-||++.-.+.+.....||. +..|..|+.+|+..+ ..|++|+.++.
T Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~~-----~~CP~Cr~~~~ 88 (91)
T 2l0b_A 35 GAVGQEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQKS-----GTCPVCRCMFP 88 (91)
T ss_dssp SSSSSCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTTT-----CBCTTTCCBSS
T ss_pred cccCCCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHcC-----CcCcCcCccCC
Confidence 3445677899999754332334567864 679999999999753 48999998775
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.53 E-value=2.5e-05 Score=53.28 Aligned_cols=51 Identities=24% Similarity=0.589 Sum_probs=36.7
Q ss_pred CCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
+...|-||++.-.+.+.+...| .| .+..|..|+.+|++.+ ..|++|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~-~C---~H~f~~~Ci~~w~~~~-----~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLP-RC---GHGFHAECVDMWLGSH-----STCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECS-SS---CCEECTTHHHHTTTTC-----CSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECC-CC---CCcccHHHHHHHHHcC-----CcCcCCCCEeE
Confidence 4568999997654333455566 23 2569999999999653 58999998765
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.51 E-value=3.9e-05 Score=56.07 Aligned_cols=53 Identities=23% Similarity=0.565 Sum_probs=38.7
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.....|-||++.-.+.....+.||. +..|..|+.+|++.+ ..|++|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQH-----DSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTTT-----CSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHcC-----CcCcCcCCccCCc
Confidence 4567899999754332333446764 569999999999643 5899999988765
No 7
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.49 E-value=3.9e-05 Score=55.89 Aligned_cols=51 Identities=22% Similarity=0.558 Sum_probs=37.4
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
.+...|-||++.-.+.......||. +..|..|+.+|++.+ ..|++|+.++.
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~-----~~CP~Cr~~~~ 71 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN-----RTCPICRADSG 71 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC-----SSCTTTCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC-----CcCcCcCCcCC
Confidence 4567899999754322223557764 569999999999764 48999998765
No 8
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=8.7e-05 Score=53.64 Aligned_cols=52 Identities=31% Similarity=0.648 Sum_probs=36.8
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
.....|.||++.-.+.....+.||. +..|..|+.+|++.+ ..|++|+.++.-
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~-----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVR-----KVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHC-----SBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcC-----CcCCCcCccccc
Confidence 3456899999764332222334763 569999999999864 489999988763
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.29 E-value=5.3e-05 Score=59.16 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=39.7
Q ss_pred CCCcceEeccCCCCCC-----------Cc-c---ccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeeee
Q 023590 53 SLPCCRICLENDGEPD-----------DE-L---ISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~-----------~~-L---IsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~ 115 (280)
....|-||++.-.+.. ++ . +.||. +..|+.||.+|+..........|++|+..|....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 3468999997543211 11 1 56664 6799999999996532123579999999998664
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.27 E-value=0.00013 Score=49.53 Aligned_cols=51 Identities=24% Similarity=0.522 Sum_probs=37.9
Q ss_pred CCCCcceEeccCCCCC-CCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 52 GSLPCCRICLENDGEP-DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~-~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
.+...|.||++.-.+. ..+.+.||. +..|..|+.+|++.+ ..|++|+.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG-----YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT-----CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC-----CcCCCCCCcCC
Confidence 4567899999754322 235678873 569999999999865 58999988753
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.0002 Score=51.30 Aligned_cols=54 Identities=19% Similarity=0.362 Sum_probs=39.8
Q ss_pred CCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
..+...|.||++.. .++.+.||. +..|+.|+.+|++..+ ....|++|+.++...
T Consensus 17 ~~~~~~C~IC~~~~---~~~~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 17 LQEEVICPICLDIL---QKPVTIDCG-----HNFCLKCITQIGETSC--GFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCCBCTTTCSBC---SSEEECTTC-----CEEEHHHHHHHCSSSC--SCCCCSSSCCCCCCC
T ss_pred CccCCEeccCCccc---CCeEEcCCC-----ChhhHHHHHHHHHcCC--CCCCCCCCCCcCCcc
Confidence 45567999999643 367667763 5689999999997422 347999999987643
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.15 E-value=0.00018 Score=53.78 Aligned_cols=52 Identities=19% Similarity=0.592 Sum_probs=36.1
Q ss_pred CCcceEeccCCCC----------CCC-ccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 54 LPCCRICLENDGE----------PDD-ELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 54 ~~~CRIC~~~~~e----------~~~-~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
...|-||++.-.+ .++ ....| .| .+..|..||.+|++.+ ..|++|+.++..+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~-~C---~H~FH~~Ci~~Wl~~~-----~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWG-EC---NHSFHNCCMSLWVKQN-----NRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE-TT---SCEEEHHHHHHHTTTC-----CBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeC-CC---CCccChHHHHHHHHhC-----CCCCCcCCCcchh
Confidence 4568888865432 122 33444 44 3779999999999864 4899999998865
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.00043 Score=51.05 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=40.9
Q ss_pred CCCCcceEeccCCCCCCC-ccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDD-ELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~-~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.+...|-||++.-.+.+. +.+.||. +..|+.|+.+|++.+. ....|++|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSI--NGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCS--SCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCC--CCcCCCCCCCcccch
Confidence 445689999975432222 6677763 6789999999998753 247999999988754
No 14
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.00081 Score=47.07 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=34.5
Q ss_pred CCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccc
Q 023590 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTC 107 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElC 107 (280)
..+...|.||++.- .+|.+.||. +..|+.|+.+|++.++ ....|++|
T Consensus 17 ~~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDIL---QKPVTIDCG-----HNFCLKCITQIGETSC--GFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBC---SSCEECTTS-----SEECHHHHHHHHHHCS--SCCCCSCC
T ss_pred CccCCCCCcCCchh---CCeEEeCCC-----CcchHHHHHHHHHcCC--CCCcCcCC
Confidence 34567899999643 467777764 5689999999998632 24689887
No 15
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.94 E-value=0.00021 Score=50.28 Aligned_cols=51 Identities=20% Similarity=0.441 Sum_probs=36.4
Q ss_pred CCCCcceEeccCCCCCC----CccccccccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 52 GSLPCCRICLENDGEPD----DELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~----~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
.+...|-||++...++. ...+.||. +..|..|+.+|+..+ ..|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHHC-----SSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHcC-----CCCCCCCCccC
Confidence 45678999996532211 11556774 568999999999863 58999998765
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.90 E-value=0.00028 Score=50.87 Aligned_cols=50 Identities=20% Similarity=0.485 Sum_probs=38.5
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.+...|.||++.. .++...||. +..|..|+.+|+..+ ..|++|+.++...
T Consensus 13 ~~~~~C~IC~~~~---~~~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTC---VHPVSLPCK-----HVFCYLCVKGASWLG-----KRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBC---SSEEEETTT-----EEEEHHHHHHCTTCS-----SBCSSSCCBCCHH
T ss_pred CCCCCCccCCccc---CCCEEccCC-----CHHHHHHHHHHHHCC-----CcCcCcCchhCHh
Confidence 4456899999653 467777864 568999999999743 6999999988754
No 17
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.00084 Score=49.39 Aligned_cols=48 Identities=15% Similarity=0.370 Sum_probs=37.7
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
.....|.||++.. .+|.+.||. +..|..|+.+|++.+ ..|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF---QNPVVTKCR-----HYFCESCALEHFRAT-----PRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC---CSEEECTTS-----CEEEHHHHHHHHHHC-----SBCSSSCCBCC
T ss_pred CCCCCCcCCCchh---cCeeEccCC-----CHhHHHHHHHHHHCC-----CcCCCcCcccc
Confidence 4456899999653 467788875 557999999999753 58999999876
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.80 E-value=0.0015 Score=47.44 Aligned_cols=55 Identities=20% Similarity=0.418 Sum_probs=40.5
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhc-Cccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKE-GFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~-~~~~~~CElCk~~y~~~ 114 (280)
.+...|.||++.. .+|.+.||. +..|+.|+.+|+..+. ......|++|+.++...
T Consensus 17 ~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL---KEPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC---SSCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred ccCCCCcCCChhh---CcceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence 4456899999653 466777864 5689999999998742 11257999999988754
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.75 E-value=0.00081 Score=48.95 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=37.9
Q ss_pred CCCCcceEeccCCCCCCCccccc-cccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 52 GSLPCCRICLENDGEPDDELISP-CMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsP-C~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
.+...|.||++.- .+|...| |. +..|+.|+.+|+..++ ...|++|+.++.
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~---~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIM---TDAVVIPCCG-----NSYCDECIRTALLESD---EHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCC---TTCEECSSSC-----CEECTTHHHHHHHHSS---SSCCSSSCCSSC
T ss_pred CCCCCCcCCChHH---hCCeEcCCCC-----CHHHHHHHHHHHHhcC---CCcCCCCCCcCC
Confidence 4456899998643 4677777 64 5689999999998653 369999999754
No 20
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.59 E-value=0.0015 Score=46.14 Aligned_cols=50 Identities=26% Similarity=0.658 Sum_probs=37.7
Q ss_pred CCCcceEeccCCCCCCCc-cccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeeee
Q 023590 53 SLPCCRICLENDGEPDDE-LISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~-LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~ 115 (280)
....|-||++.. .++ ...||. +..|..|+.+|+..+ ..|++|+.++....
T Consensus 4 ~~~~C~IC~~~~---~~~~~~~~C~-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~~ 54 (68)
T 1chc_A 4 VAERCPICLEDP---SNYSMALPCL-----HAFCYVCITRWIRQN-----PTCPLCKVPVESVV 54 (68)
T ss_dssp CCCCCSSCCSCC---CSCEEETTTT-----EEESTTHHHHHHHHS-----CSTTTTCCCCCCEE
T ss_pred CCCCCeeCCccc---cCCcEecCCC-----CeeHHHHHHHHHhCc-----CcCcCCChhhHhhh
Confidence 456899999753 243 677864 558999999999754 58999999887543
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.49 E-value=0.00044 Score=49.35 Aligned_cols=49 Identities=29% Similarity=0.730 Sum_probs=37.4
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.+...|.||++... + .+.||. +..|..|+.+|+.. ...|++|+.++...
T Consensus 13 ~~~~~C~IC~~~~~---~-~~~~Cg-----H~fc~~Ci~~~~~~-----~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRA---D-LILPCA-----HSFCQKCIDKWSDR-----HRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCC---S-EEETTT-----EEECHHHHHHSSCC-----CSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCcc---C-cccCCC-----CcccHHHHHHHHHC-----cCcCCCcCCcccCC
Confidence 44678999997542 2 778874 55899999999973 36999999887743
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.44 E-value=0.0028 Score=45.94 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=40.2
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhc-Cccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKE-GFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~-~~~~~~CElCk~~y~~~ 114 (280)
.+...|.||++.. .+|...||. +..|+.|+.+|+..+. ......|++|+.++...
T Consensus 17 ~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELL---TQPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCC---SSCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred cCCCCCCCCCccc---CCceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence 4457899999753 456777764 5589999999998731 11257999999988754
No 23
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=96.38 E-value=0.00053 Score=48.72 Aligned_cols=54 Identities=19% Similarity=0.432 Sum_probs=37.9
Q ss_pred CCCCCcceEeccCCCCC----CCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 51 NGSLPCCRICLENDGEP----DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~----~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
..+...|-||++.-.++ ....+.||. +..|+.|+.+|++.+ ..|++|+.++...
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINHK 64 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC-----SBCTTTCCBCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC-----CCCCCCCCccChh
Confidence 34567899999643221 112566764 569999999999754 5899999988743
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.31 E-value=0.0021 Score=46.28 Aligned_cols=50 Identities=18% Similarity=0.416 Sum_probs=37.2
Q ss_pred CCCCcceEeccCCCCCCCccc-cccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELI-SPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LI-sPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.+...|.||++.. .+|.. .||. +..|+.|+.+|++.+ ..|++|+.++...
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYL---IDATTITECL-----HTFCKSCIVRHFYYS-----NRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCC---SSCEECSSSC-----CEECHHHHHHHHHHC-----SSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHH---HCcCEECCCC-----CHHHHHHHHHHHHcC-----CcCCCcCcccCcc
Confidence 3456899999653 34554 4774 557999999999753 5899999988754
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.31 E-value=0.0016 Score=45.98 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=37.3
Q ss_pred CCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
..+...|.||++.. .+|...||. +..|+.|+.+|++.. ...|++|+.++..
T Consensus 12 ~~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL---CSPKQTECG-----HRFCESCMAALLSSS----SPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEE---SSCCCCSSS-----CCCCHHHHHHHHTTS----SCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHh---cCeeECCCC-----CHHHHHHHHHHHHhC----cCCCCCCCcCCCh
Confidence 34567899999643 356666764 558999999999632 3689999988764
No 26
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=96.29 E-value=0.00054 Score=47.49 Aligned_cols=52 Identities=19% Similarity=0.482 Sum_probs=36.9
Q ss_pred CCCcceEeccCCCCC----CCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 53 SLPCCRICLENDGEP----DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~----~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
+...|-||++.-.++ ....+.||. +..|..|+.+|++.+ ..|++|+.++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHHC-----SBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHcC-----CCCCCCCccCCcc
Confidence 456899999643211 112556764 568999999999863 5999999987753
No 27
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.21 E-value=0.0027 Score=50.35 Aligned_cols=52 Identities=15% Similarity=0.436 Sum_probs=36.2
Q ss_pred CCCcceEeccCCCCC--------------CCc-cccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 53 SLPCCRICLENDGEP--------------DDE-LISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~--------------~~~-LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
+...|-||++.-.+. +.+ ...||. +..|..|+.+|+..+ ..|++|+.+|.++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~-----~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKTR-----QVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTTC-----SBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHcC-----CcCcCCCCcceee
Confidence 456799998653321 111 224543 779999999999753 5899999998765
No 28
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.99 E-value=0.0049 Score=41.88 Aligned_cols=46 Identities=26% Similarity=0.582 Sum_probs=33.1
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccc
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTC 107 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElC 107 (280)
.+...|.||++.. .+|.+.||. +..|+.|+.+|+...+ ....|++|
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYL---KEPVIIECG-----HNFCKACITRWWEDLE--RDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBC---SSCCCCSSC-----CCCCHHHHHHHTTSSC--CSCCCSCC
T ss_pred ccCCCCccCCccc---CccEeCCCC-----CccCHHHHHHHHHhcC--CCCCCCCC
Confidence 4456899999653 356777764 4589999999986422 24689887
No 29
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=95.73 E-value=0.0069 Score=45.38 Aligned_cols=55 Identities=25% Similarity=0.530 Sum_probs=41.3
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.+...|-||++.- +..++.+.||.|. +-+++.||.++.... ...|++|+.+|..+
T Consensus 9 ~~~~~CpICle~~-~~~d~~~~p~~CG---H~fC~~Cl~~~~~~~----~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPL-EIDDINFFPCTCG---YQICRFCWHRIRTDE----NGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBC-CTTTTTCCSSTTS---CCCCHHHHHHHTTSS----CSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccC-ccccccccccCCC---CCcCHHHHHHHHhcC----CCCCCCCCCccCCC
Confidence 3456899999743 2346678899993 558999999987532 36999999999865
No 30
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=95.68 E-value=0.0023 Score=51.98 Aligned_cols=54 Identities=15% Similarity=0.468 Sum_probs=0.8
Q ss_pred CCCcceEeccCCCCC-------------CCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 53 SLPCCRICLENDGEP-------------DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~-------------~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
..+.|-||++.-.+. ++-.+....| .+..|..|+.+|+..+ ..|++|+.+|.++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C---~H~FH~~CI~~Wl~~~-----~~CP~Cr~~~~~~ 113 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC---NHAFHFHCISRWLKTR-----QVCPLDNREWEFQ 113 (117)
T ss_dssp CC-------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCc---CceEcHHHHHHHHHcC-----CcCCCCCCeeeee
Confidence 346899999653221 1112222234 2679999999999864 5899999998764
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=95.62 E-value=0.0058 Score=45.65 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=38.6
Q ss_pred CCCCCcceEeccCCCCCCCccccc-cccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 51 NGSLPCCRICLENDGEPDDELISP-CMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsP-C~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
..+.-.|-||++.- .+|.+.| |. +..++.||.+|+..++ ...|++|+.++.
T Consensus 10 ~~~~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~---~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIM---TDAVVIPCCG-----NSYCDECIRTALLESD---EHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEEC---SSCEECTTTC-----CEECHHHHHHHHHHCT---TCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhh---cCceECCCCC-----CHHHHHHHHHHHHhcC---CCcCcCCCCcCC
Confidence 34567899999643 4677888 53 5588999999998653 369999998874
No 32
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.47 E-value=0.0051 Score=46.23 Aligned_cols=53 Identities=15% Similarity=0.374 Sum_probs=36.8
Q ss_pred CCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeeee
Q 023590 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~ 115 (280)
....|-||++.-. ++ ...+ .| ..-.|..||.+|++.+. ...|++|+.++..+.
T Consensus 14 ~i~~C~IC~~~i~-~g--~~C~-~C---~h~fH~~Ci~kWl~~~~---~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 14 AVKICNICHSLLI-QG--QSCE-TC---GIRMHLPCVAKYFQSNA---EPRCPHCNDYWPHEI 66 (74)
T ss_dssp SSCBCSSSCCBCS-SS--EECS-SS---CCEECHHHHHHHSTTCS---SCCCTTTCSCCCSCC
T ss_pred CCCcCcchhhHcc-cC--CccC-CC---CchhhHHHHHHHHHhcC---CCCCCCCcCcCCCCC
Confidence 3468999996532 21 1112 44 35589999999997653 369999999988764
No 33
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.46 E-value=0.0098 Score=57.33 Aligned_cols=52 Identities=29% Similarity=0.715 Sum_probs=40.0
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~ 115 (280)
.....|.||++.. .++.+.||.- ..|..|+.+|+... ...|++|+.++....
T Consensus 330 ~~~~~C~ICle~~---~~pv~lpCGH-----~FC~~Ci~~wl~~~----~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 330 STFQLCKICAEND---KDVKIEPCGH-----LMCTSCLTSWQESE----GQGCPFCRCEIKGTE 381 (389)
T ss_dssp TSSSBCTTTSSSB---CCEEEETTCC-----EECHHHHHHHHHHT----CSBCTTTCCBCCEEE
T ss_pred CCCCCCCccCcCC---CCeEEeCCCC-----hhhHHHHHHHHhcC----CCCCCCCCCccCCce
Confidence 3447999999653 4678899864 35999999999842 369999999888653
No 34
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=95.35 E-value=0.0064 Score=44.03 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=38.8
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.+.-.|-||++.- .+|.+.||. +..++.|+.+|+... ...|++|+.++...
T Consensus 6 ~~~~~C~IC~~~~---~~Pv~~~Cg-----H~fc~~Ci~~~~~~~----~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 6 PEYFRCPISLELM---KDPVIVSTG-----QTYERSSIQKWLDAG----HKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSSCTTTSCCC---SSEEEETTT-----EEEEHHHHHHHHTTT----CCBCTTTCCBCSSC
T ss_pred cccCCCCCccccc---cCCEEcCCC-----CeecHHHHHHHHHHC----cCCCCCCcCCCChh
Confidence 4466899999643 467778764 568999999999742 36899999987653
No 35
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.30 E-value=0.0084 Score=46.04 Aligned_cols=50 Identities=24% Similarity=0.494 Sum_probs=37.9
Q ss_pred CCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 54 ~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
...|-||++.- .+|...||. +..|..|+.+|+..+. ....|++|+.++..
T Consensus 21 ~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELI---KEPVSTKCD-----HIFCKFCMLKLLNQKK--GPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCC---SSCCBCTTS-----CCCCSHHHHHHHHSSS--SSCCCTTTSCCCCT
T ss_pred CCCCcccChhh---cCeEECCCC-----CHHHHHHHHHHHHhCC--CCCCCcCCCCcCCH
Confidence 45899999643 467777764 5689999999998653 23689999988764
No 36
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.09 E-value=0.022 Score=54.71 Aligned_cols=59 Identities=25% Similarity=0.591 Sum_probs=39.5
Q ss_pred CCCCcceEeccCCCCCCCcc-ccccc---cCCCCcccchhhHHHHHHhhcCc------cccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDEL-ISPCM---CKGTQQFVHRACLDHWRSVKEGF------AFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~L-IsPC~---CkGSlkyVH~~CL~~Wi~~s~~~------~~~~CElCk~~y~~~ 114 (280)
.....|-||++.-.+ ++.+ ...|. | .+..|..||.+|+....+. -...|+.|+.+....
T Consensus 306 e~~~ECaICys~~l~-~g~lPdk~C~n~~C---~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLD-GGEVPLVSCDNAKC---VLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCT-TCCCCCBCCSCTTC---CCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred cCCccCcccceeecC-CCCCccccccCCcc---CCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 346689999975432 2333 24463 5 3679999999999864321 235899999977643
No 37
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=95.06 E-value=0.007 Score=46.52 Aligned_cols=51 Identities=25% Similarity=0.706 Sum_probs=39.0
Q ss_pred CCCCcceEeccCCCCCCCccc-cccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELI-SPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LI-sPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.+...|-||++.- .+|.. .||. +..|..||.+|+..++ ..|++|+.++...
T Consensus 20 ~~~~~C~IC~~~~---~~p~~~~~Cg-----H~FC~~Ci~~~~~~~~----~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 20 AEVFRCFICMEKL---RDARLCPHCS-----KLCCFSCIRRWLTEQR----AQCPHCRAPLQLR 71 (100)
T ss_dssp HHHTBCTTTCSBC---SSEEECTTTC-----CEEEHHHHHHHHHHTC----SBCTTTCCBCCGG
T ss_pred CCCCCCccCCccc---cCccccCCCC-----ChhhHHHHHHHHHHCc----CCCCCCCCcCCHH
Confidence 3456899999653 45666 7774 5689999999998753 5999999998643
No 38
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=95.03 E-value=0.0049 Score=49.98 Aligned_cols=46 Identities=22% Similarity=0.528 Sum_probs=36.1
Q ss_pred CcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 55 PCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 55 ~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
..|-||++.- .+|.+.||. +..|..|+.+|+..+ ..|++|+.++..
T Consensus 54 ~~C~iC~~~~---~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYF---IEAVTLNCA-----HSFCSYCINEWMKRK-----IECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBC---SSEEEETTS-----CEEEHHHHHHHTTTC-----SBCTTTCCBCCC
T ss_pred CCCcccCccc---CCceECCCC-----CCccHHHHHHHHHcC-----CcCCCCCCcCCC
Confidence 4699999643 467788874 568999999999743 589999988754
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=94.65 E-value=0.011 Score=46.85 Aligned_cols=48 Identities=21% Similarity=0.377 Sum_probs=37.0
Q ss_pred CCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 54 ~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
...|-||++.- .+|...||. +..|+.|+.+|+..+ ...|++|+.++..
T Consensus 52 ~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQELV---FRPITTVCQ-----HNVCKDCLDRSFRAQ----VFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSBC---SSEEECTTS-----CEEEHHHHHHHHHTT----CCBCTTTCCBCCT
T ss_pred CCCCCcCChHH---cCcEEeeCC-----CcccHHHHHHHHhHC----cCCCCCCCccCCC
Confidence 35799999643 467777864 458999999999843 3599999998875
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=94.60 E-value=0.0093 Score=45.27 Aligned_cols=47 Identities=28% Similarity=0.538 Sum_probs=35.7
Q ss_pred CCcceEeccCCCCCCCcccc-ccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 54 LPCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 54 ~~~CRIC~~~~~e~~~~LIs-PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
...|.||++.- .+|... ||. +..|+.|+.+|+..+ ..|++|+.++..
T Consensus 22 ~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYF---NIAMIIPQCS-----HNYCSLCIRKFLSYK-----TQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBC---SSEEECTTTC-----CEEEHHHHHHHHTTC-----CBCTTTCCBCCG
T ss_pred CCCcccCChhh---CCcCEECCCC-----CHhhHHHHHHHHHCC-----CCCCCCCCcCCh
Confidence 45899999643 356554 664 568999999999743 599999998774
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=94.59 E-value=0.0079 Score=49.88 Aligned_cols=48 Identities=19% Similarity=0.441 Sum_probs=35.8
Q ss_pred CCcceEeccCCCCCCCcccc-ccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 54 LPCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 54 ~~~CRIC~~~~~e~~~~LIs-PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
...|-||++.- .+|... ||. +..|..|+.+|+... ...|++|+.++..
T Consensus 54 ~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDML---KNTMTTKECL-----HRFCADCIITALRSG----NKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSBC---SSEEEETTTC-----CEEEHHHHHHHHHTT----CCBCTTTCCBCCS
T ss_pred CCCCcccChHh---hCcCEeCCCC-----ChhHHHHHHHHHHhC----cCCCCCCCCcCCC
Confidence 35899999653 346554 664 668999999999853 3689999998753
No 42
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.48 E-value=0.0086 Score=42.04 Aligned_cols=52 Identities=15% Similarity=0.376 Sum_probs=35.5
Q ss_pred CCcceEecc-CCCCCCCc-cccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 54 LPCCRICLE-NDGEPDDE-LISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 54 ~~~CRIC~~-~~~e~~~~-LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
...|-||++ ...++... .+.||. +..|+.|+.+|+... ...|++|+.++...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVRG----AGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHTT----SSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHcC----CCcCCCCCCccccc
Confidence 457999996 22222222 456765 458999999998743 36899999988643
No 43
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=94.46 E-value=0.0056 Score=44.16 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=39.9
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcC--ccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEG--FAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~--~~~~~CElCk~~y~~~ 114 (280)
.+...|.||++.- .+|...||. +..|+.|+.+|+..+.. .....|++|+.++...
T Consensus 10 ~~~~~C~IC~~~~---~~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELL---TEPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEEC---SSCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred ccCCCCcCCCccc---CCeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence 3457899999753 456677764 56899999999976321 1357999999988753
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=93.93 E-value=0.018 Score=47.77 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=37.9
Q ss_pred CCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 54 ~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
...|.||++. ..+|.+.||. ...++.|+.+|+... ...|++|+.++...
T Consensus 78 ~~~C~IC~~~---~~~pv~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQEL---VYQPVTTECF-----HNVCKDCLQRSFKAQ----VFSCPACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSB---CSSEEECTTS-----CEEEHHHHHHHHHTT----CCBCTTTCCBCCTT
T ss_pred CCEeecCChh---hcCCEEcCCC-----CchhHHHHHHHHHhC----CCcCCCCCccCCCC
Confidence 3589999964 3467778875 457999999999853 25899999988754
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=93.80 E-value=0.028 Score=44.17 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=37.6
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
.+.-.|-||++.- .+|...||. ...++.|+.+|+..+. ..|++|+.++..
T Consensus 16 ~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMAL---REAVQTPCG-----HRFCKACIIKSIRDAG----HKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCcCChhh---cCeEECCcC-----ChhhHHHHHHHHhhCC----CCCCCCCCCcCH
Confidence 4446899999643 467777753 5689999999998763 389999887764
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=93.71 E-value=0.0082 Score=46.80 Aligned_cols=53 Identities=19% Similarity=0.446 Sum_probs=38.0
Q ss_pred CCCCcceEeccCCCCC----CCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEP----DDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~----~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
++...|-||++.-.++ ......||. +..|..|+.+|++.+ ..|++|+.++...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC-----SBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC-----CCCCCCCCcCccc
Confidence 4567899999643221 112567764 568999999999754 4999999988754
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=93.56 E-value=0.024 Score=44.12 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=37.5
Q ss_pred CCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 54 ~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
...|-||++.- .+|...||. +..|+.|+.+|+..++ ..|++|+.++...
T Consensus 23 ~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~~ 71 (116)
T 1rmd_A 23 SISCQICEHIL---ADPVETSCK-----HLFCRICILRCLKVMG----SYCPSCRYPCFPT 71 (116)
T ss_dssp HTBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHTC----SBCTTTCCBCCGG
T ss_pred CCCCCCCCcHh---cCcEEcCCC-----CcccHHHHHHHHhHCc----CcCCCCCCCCCHh
Confidence 46799999653 467777764 5689999999998642 5899999987753
No 48
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=93.15 E-value=0.023 Score=43.78 Aligned_cols=48 Identities=19% Similarity=0.427 Sum_probs=36.5
Q ss_pred CCCcceEeccCCCCCCCcccc-ccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 53 SLPCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIs-PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
+...|-||++.- .+|... ||. +..|..|+.+|+..+ ..|++|+.++..
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~-----~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYF---IDATTIIECL-----HSFCKTCIVRYLETS-----KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBC---SSEEEETTTC-----CEEEHHHHHHHHTSC-----SBCTTTCCBSCS
T ss_pred CcCCCccCChHH---hCcCEeCCCC-----ChhhHHHHHHHHHhC-----CcCcCCCccccc
Confidence 346799999643 356664 775 557999999999753 699999998774
No 49
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=92.91 E-value=0.0046 Score=45.20 Aligned_cols=47 Identities=17% Similarity=0.569 Sum_probs=36.1
Q ss_pred CCCcceEeccCCCCCCCccccccccCCCCcc-cchhhHHHHHHhhcCccccccccccceeeeeee
Q 023590 53 SLPCCRICLENDGEPDDELISPCMCKGTQQF-VHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVE 116 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIsPC~CkGSlky-VH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~~ 116 (280)
+...|.||++. ..++...||. +. ..+.|+.+| ..|++|+.++.-.++
T Consensus 23 ~~~~C~iC~~~---~~~~~~~pCg-----H~~~C~~C~~~~---------~~CP~Cr~~i~~~~~ 70 (74)
T 4ic3_A 23 EEKLCKICMDR---NIAIVFVPCG-----HLVTCKQCAEAV---------DKCPMCYTVITFKQK 70 (74)
T ss_dssp HHTBCTTTSSS---BCCEEEETTC-----CBCCCHHHHTTC---------SBCTTTCCBCSEEEE
T ss_pred cCCCCCCCCCC---CCCEEEcCCC-----ChhHHHHhhhcC---------ccCCCcCcCccCcEE
Confidence 44689999964 3467788985 44 889999888 489999998876543
No 50
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=92.87 E-value=0.019 Score=47.22 Aligned_cols=51 Identities=16% Similarity=0.211 Sum_probs=37.2
Q ss_pred CCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 50 ~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
.-.+.-.|-||++.- .+|...||. ...++.|+.+|++.+ ...|++|+.+..
T Consensus 27 ~l~~~~~C~IC~~~~---~~pv~~~Cg-----H~FC~~Ci~~~~~~~----~~~CP~Cr~~~~ 77 (141)
T 3knv_A 27 KLEAKYLCSACRNVL---RRPFQAQCG-----HRYCSFCLASILSSG----PQNCAACVHEGI 77 (141)
T ss_dssp GCCGGGBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHGGGS----CEECHHHHHTTC
T ss_pred cCCcCcCCCCCChhh---cCcEECCCC-----CccCHHHHHHHHhcC----CCCCCCCCCccc
Confidence 344566899999643 467666654 457999999999643 258999988654
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=91.90 E-value=0.0094 Score=46.46 Aligned_cols=48 Identities=19% Similarity=0.404 Sum_probs=36.9
Q ss_pred CCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 54 LPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 54 ~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
.-.|-||++.- .+|...||. +..|+.|+.+|+... ...|++|+.++..
T Consensus 15 ~~~C~iC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~----~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEIL---VEPVTLPCN-----HTLCKPCFQSTVEKA----SLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBC---SSCEECTTS-----CEECHHHHCCCCCTT----TSBCTTTCCBCHH
T ss_pred CCCCccCCccc---CceeEcCCC-----CHHhHHHHHHHHhHC----cCCCCCCCcccCc
Confidence 35799999643 467777864 568999999999643 3699999998874
No 52
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.47 E-value=0.19 Score=36.21 Aligned_cols=51 Identities=18% Similarity=0.481 Sum_probs=36.3
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeeeeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELF 118 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~~~~ 118 (280)
.+...|.||++.. .++.+.||.= ..+-..|+.+ ...|++|+.++...++.+
T Consensus 13 ~~~~~C~IC~~~~---~~~v~~pCgH----~~~C~~C~~~---------~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 13 ENSKDCVVCQNGT---VNWVLLPCRH----TCLCDGCVKY---------FQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCSSCCSSSSSSC---CCCEETTTTB----CCSCTTHHHH---------CSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCcCcCC---CCEEEECCCC----hhhhHHHHhc---------CCCCCCCCcchhceEEee
Confidence 3456899999753 4678899862 1266788872 269999999888765544
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=91.22 E-value=0.14 Score=39.60 Aligned_cols=52 Identities=10% Similarity=-0.000 Sum_probs=38.9
Q ss_pred CCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 50 ~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
...+.-.|-||++- -.+|.+.||. -+-.-+.|+.+|+... ..|++|+.++..
T Consensus 18 ~~p~~~~CpI~~~~---m~dPV~~~cG----~htf~r~cI~~~l~~~-----~~cP~~~~~l~~ 69 (98)
T 1wgm_A 18 DACDEFLDPIMSTL---MCDPVVLPSS----RVTVDRSTIARHLLSD-----QTDPFNRSPLTM 69 (98)
T ss_dssp SCCTTTBCTTTCSB---CSSEEECTTT----CCEEEHHHHHHHTTTS-----CBCTTTCSBCCT
T ss_pred cCcHhcCCcCcccc---ccCCeECCCC----CeEECHHHHHHHHHhC-----CCCCCCCCCCCh
Confidence 34567799999964 3578888865 1346799999999752 589999988764
No 54
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=91.20 E-value=0.088 Score=37.41 Aligned_cols=51 Identities=16% Similarity=0.382 Sum_probs=35.7
Q ss_pred CCcceEeccCCCCCCCcccc--ccccCCCCcc-cchhhHHHHHHhhcCccccccccccceeeeeeee
Q 023590 54 LPCCRICLENDGEPDDELIS--PCMCKGTQQF-VHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVEL 117 (280)
Q Consensus 54 ~~~CRIC~~~~~e~~~~LIs--PC~CkGSlky-VH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~~~ 117 (280)
...|.||++.. .+..+. ||. +. .=..|+.+|.+.+ ..|++|+.++.-.++.
T Consensus 8 ~~~C~IC~~~~---~~~~~~~~pCg-----H~~~C~~C~~~~~~~~-----~~CPiCR~~i~~~i~i 61 (64)
T 2vje_A 8 IEPCVICQGRP---KNGCIVHGKTG-----HLMACFTCAKKLKKRN-----KPCPVCRQPIQMIVLT 61 (64)
T ss_dssp GSCCTTTSSSC---SCEEEEETTEE-----EEEECHHHHHHHHHTT-----CCCTTTCCCCCEEEEE
T ss_pred cCCCCcCCCCC---CCEEEECCCCC-----ChhhHHHHHHHHHHcC-----CcCCCcCcchhceEee
Confidence 45799999753 355555 875 22 3479999999643 5899999988755443
No 55
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=91.07 E-value=0.088 Score=37.29 Aligned_cols=53 Identities=19% Similarity=0.428 Sum_probs=37.0
Q ss_pred CCCCcceEeccCCCCCCCcccc--ccccCCCCcc-cchhhHHHHHHhhcCccccccccccceeeeeeee
Q 023590 52 GSLPCCRICLENDGEPDDELIS--PCMCKGTQQF-VHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVEL 117 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIs--PC~CkGSlky-VH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~~~ 117 (280)
.....|.||++.. .++.+. ||. +. +-..|..+|.+.+ ..|++|+.++.-.++.
T Consensus 5 ~~~~~C~IC~~~~---~~~~~~~~pCg-----H~~~C~~C~~~~~~~~-----~~CPiCR~~i~~~i~i 60 (63)
T 2vje_B 5 NLLKPCSLCEKRP---RDGNIIHGRTG-----HLVTCFHCARRLKKAG-----ASCPICKKEIQLVIKV 60 (63)
T ss_dssp GGGSBCTTTSSSB---SCEEEEETTEE-----EEEECHHHHHHHHHTT-----CBCTTTCCBCCEEEEE
T ss_pred CcCCCCcccCCcC---CCeEEEecCCC-----CHhHHHHHHHHHHHhC-----CcCCCcCchhhceEEE
Confidence 3456899999753 344444 885 32 5689999998643 5899999988755443
No 56
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=90.34 E-value=0.051 Score=42.20 Aligned_cols=53 Identities=19% Similarity=0.487 Sum_probs=36.6
Q ss_pred CCCCcceEeccCCCCC--CC--ccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEP--DD--ELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~--~~--~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
.+...|-||++.-.+. .. ....||. ...|..|+.+|++.+ ..|++|+.++...
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~-----~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA-----NTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC-----SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC-----CCCCCCCCcCChh
Confidence 4566799999643211 11 1345553 679999999999864 5999999988743
No 57
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=88.80 E-value=0.25 Score=36.91 Aligned_cols=51 Identities=6% Similarity=-0.158 Sum_probs=38.7
Q ss_pred CCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
..+.-.|-||++-- .+|.+.||. +-.-+.|+.+|+... ..|++|+.++...
T Consensus 11 ~p~~~~CpI~~~~m---~dPV~~~cG-----htf~r~~I~~~l~~~-----~~cP~~~~~l~~~ 61 (85)
T 2kr4_A 11 APDEFRDPLMDTLM---TDPVRLPSG-----TVMDRSIILRHLLNS-----PTDPFNRQMLTES 61 (85)
T ss_dssp CCTTTBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHC-----SBCTTTCCBCCGG
T ss_pred CchheECcccCchh---cCCeECCCC-----CEECHHHHHHHHhcC-----CCCCCCcCCCChH
Confidence 35567899999643 478999963 347799999999842 5899999887643
No 58
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=88.71 E-value=0.078 Score=41.50 Aligned_cols=46 Identities=15% Similarity=0.393 Sum_probs=35.3
Q ss_pred CCCcceEeccCCCCCCCcccc-ccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 53 SLPCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIs-PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
+...|.||++.- .+|.+. ||. +..++.|+.+|+. ..|++|+.++..
T Consensus 21 ~~~~C~IC~~~~---~~pv~~~~Cg-----H~fC~~Ci~~~~~-------~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNIL---REPVCLGGCE-----HIFCSNCVSDCIG-------TGCPVCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCC---SSCBCCCSSS-----CCBCTTTGGGGTT-------TBCSSSCCBCSC
T ss_pred hCCCCCCCChHh---hCccEeCCCC-----CHHHHHHHHHHhc-------CCCcCCCCcCcc
Confidence 356899999643 467666 764 5688999999985 489999998753
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.64 E-value=0.044 Score=39.79 Aligned_cols=46 Identities=17% Similarity=0.592 Sum_probs=33.2
Q ss_pred CCCcceEeccCCCCCCCccccccccCCCCcc-cchhhHHHHHHhhcCccccccccccceeeeee
Q 023590 53 SLPCCRICLENDGEPDDELISPCMCKGTQQF-VHRACLDHWRSVKEGFAFSHCTTCKAQFHLRV 115 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIsPC~CkGSlky-VH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~ 115 (280)
+...|.||++. ..++.+.||. +. ....|+.+ ...|++|+.++...+
T Consensus 24 ~~~~C~IC~~~---~~~~~~~pCg-----H~~~C~~C~~~---------~~~CP~Cr~~i~~~~ 70 (75)
T 2ecg_A 24 EEKLCKICMDR---NIAIVFVPCG-----HLVTCKQCAEA---------VDKCPMCYTVITFKQ 70 (75)
T ss_dssp HHHSCSSSCSS---CCCBCCSSSC-----CCCBCHHHHHH---------CSBCTTTCCBCCCCC
T ss_pred CCCCCCcCCCC---CCCEEEecCC-----CHHHHHHHhhC---------CCCCccCCceecCcE
Confidence 34689999965 3467888984 33 67899842 258999999887543
No 60
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=87.95 E-value=0.21 Score=44.68 Aligned_cols=52 Identities=17% Similarity=0.454 Sum_probs=36.6
Q ss_pred CCCCcceEeccCCCCCCCccccccc-cCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCM-CKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~-CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
+..+.|-||++--. .+ .-|. |. .-.|..|+.+|++.++ ...|+.|+.++...
T Consensus 178 ~~i~~C~iC~~iv~-~g----~~C~~C~---~~~H~~C~~~~~~~~~---~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 178 DAVKICNICHSLLI-QG----QSCETCG---IRMHLPCVAKYFQSNA---EPRCPHCNDYWPHE 230 (238)
T ss_dssp TTCCBCTTTCSBCS-SC----EECSSSC---CEECHHHHHHHTTTCS---SCBCTTTCCBCCSC
T ss_pred CCCCcCcchhhHHh-CC----cccCccC---hHHHHHHHHHHHHhCC---CCCCCCCCCCCCCC
Confidence 45789999996432 11 2221 53 4599999999997643 46999999988765
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=87.74 E-value=0.26 Score=42.79 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=37.8
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
.+.-.|-||++- -.+|.+.||. +-.-+.|+.+|+..++ ..|++|+.++..
T Consensus 206 ~~~~~c~i~~~~---~~dPv~~~~g-----h~f~~~~i~~~~~~~~----~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFEL---MREPCITPSG-----ITYDRKDIEEHLQRVG----HFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSB---CSSEEECSSC-----CEEETTHHHHHHHHTC----SSCTTTCCCCCG
T ss_pred CcccCCcCcCCH---hcCCeECCCC-----CEECHHHHHHHHHHCC----CCCcCCCCCCch
Confidence 455689999964 3588999973 3466899999998653 349999988864
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=86.92 E-value=0.32 Score=37.69 Aligned_cols=52 Identities=6% Similarity=-0.150 Sum_probs=39.6
Q ss_pred cCCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 49 IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 49 ~~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
....+.-.|-||++- -.+|.+.||. +-.-+.|+.+|+.. ...|++|+.++..
T Consensus 24 ~~~p~~~~CpI~~~~---m~dPV~~~cG-----htf~r~~I~~~l~~-----~~~cP~~~~~l~~ 75 (100)
T 2kre_A 24 SDAPDEFRDPLMDTL---MTDPVRLPSG-----TIMDRSIILRHLLN-----SPTDPFNRQTLTE 75 (100)
T ss_dssp SSCSTTTBCTTTCSB---CSSEEEETTT-----EEEEHHHHHHHTTS-----CSBCSSSCCBCCT
T ss_pred ccCcHhhCCcCccCc---ccCCeECCCC-----CEEchHHHHHHHHc-----CCCCCCCCCCCCh
Confidence 344567799999864 3578999963 34779999999973 2589999998764
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=85.36 E-value=0.048 Score=40.51 Aligned_cols=52 Identities=15% Similarity=0.488 Sum_probs=36.1
Q ss_pred CCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeeeeeeecc
Q 023590 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVELFED 120 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~~~~~~ 120 (280)
+...|.||++.. .++.+.||.= ...=..|+.+| ..|++|+.++...++.+.+
T Consensus 17 ~~~~C~IC~~~~---~~~v~~pCgH----~~~C~~C~~~~---------~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 17 EAMLCMVCCEEE---INSTFCPCGH----TVCCESCAAQL---------QSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHTBCTTTSSSB---CCEEEETTCB----CCBCHHHHTTC---------SBCTTTCCBCCEEEECBCT
T ss_pred CCCEeEEeCccc---CcEEEECCCC----HHHHHHHHHhc---------CcCCCCCchhhCeEEEEeC
Confidence 346899999653 4678889862 11346787655 3999999999877655433
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=83.77 E-value=0.39 Score=39.63 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=36.8
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHL 113 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~ 113 (280)
.+.-.|-||++.- .+|...||. ....+.|+.+|++.+. ..|++|+.++..
T Consensus 16 ~~~~~C~IC~~~~---~~pv~~~Cg-----H~fC~~Ci~~~~~~~~----~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMAL---REAVQTPCG-----HRFCKACIIKSIRDAG----HKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHHC----SBCTTTCCBCCG
T ss_pred CCCCCCCCCChhh---cCcEECCCC-----CHHHHHHHHHHHHhCC----CCCCCCccCcch
Confidence 4456899999643 467776653 5578999999998653 499999877653
No 65
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=81.38 E-value=1.6 Score=33.84 Aligned_cols=52 Identities=21% Similarity=0.487 Sum_probs=32.2
Q ss_pred cCCCCCCcceEeccCCCCCCCcccc--ccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 49 IENGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 49 ~~~~~~~~CRIC~~~~~e~~~~LIs--PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
....+...| ||.+.. .+.+|. =|.|. ..|.|..|+. |... ....+.|+.|..
T Consensus 31 ~d~~e~~yC-iC~~~~---~g~MI~CD~~dC~--~~WfH~~CVg--l~~~-p~g~W~Cp~C~~ 84 (91)
T 1weu_A 31 VDPNEPTYC-LCHQVS---YGEMIGCDNPDCS--IEWFHFACVG--LTTK-PRGKWFCPRCSQ 84 (91)
T ss_dssp CCSCCCBCS-TTCCBC---CSCCCCCSCSSCS--CCCCCSTTTT--CSSC-CCSSCCCTTTCC
T ss_pred cCCCCCcEE-ECCCCC---CCCEeEecCCCCC--CCCEecccCC--cCcC-CCCCEECcCccC
Confidence 334556677 998643 245663 23343 2799999987 4332 235799999965
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=80.95 E-value=0.15 Score=48.07 Aligned_cols=48 Identities=19% Similarity=0.573 Sum_probs=36.8
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcc-cchhhHHHHHHhhcCccccccccccceeeeeee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQF-VHRACLDHWRSVKEGFAFSHCTTCKAQFHLRVE 116 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlky-VH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~~~ 116 (280)
.+...|.||++. ..++...||. +. ..+.|+.+| ..|++|+.++.-.++
T Consensus 293 ~~~~~C~IC~~~---~~~~v~lpCg-----H~~fC~~C~~~~---------~~CP~CR~~i~~~~~ 341 (345)
T 3t6p_A 293 QEERTCKVCMDK---EVSVVFIPCG-----HLVVCQECAPSL---------RKCPICRGIIKGTVR 341 (345)
T ss_dssp HTTCBCTTTSSS---BCCEEEETTC-----CEEECTTTGGGC---------SBCTTTCCBCCEEEE
T ss_pred cCCCCCCccCCc---CCceEEcCCC-----ChhHhHHHHhcC---------CcCCCCCCCccCeEE
Confidence 345799999975 3477888986 34 788999877 489999999886544
No 67
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.90 E-value=0.36 Score=33.06 Aligned_cols=46 Identities=22% Similarity=0.557 Sum_probs=33.6
Q ss_pred CCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
+...|.||++.- .+|.+.||. +..++.|+.+| ...|++|+.++.+.
T Consensus 5 ~~~~C~IC~~~~---~~p~~l~Cg-----H~fC~~Ci~~~--------~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEA---KCPKLLPCL-----HTLCSGCLEAS--------GMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSC---BCCSCSTTS-----CCSBTTTCSSS--------SSSCSSCCSSSSCC
T ss_pred cCCCceEeCCcc---CCeEEcCCC-----CcccHHHHccC--------CCCCCcCCcEeecC
Confidence 445799999643 467888864 34788998773 36899999988754
No 68
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.36 E-value=1.8 Score=33.97 Aligned_cols=55 Identities=22% Similarity=0.427 Sum_probs=38.0
Q ss_pred CCCCcceEeccCCC-CCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 52 GSLPCCRICLENDG-EPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 52 ~~~~~CRIC~~~~~-e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
....+|.||-+.-+ +.++++.--|+=- ---|=+.|++.=++.- ...|..||++|.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC--~FPvCrpCyEYErkeG----~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNEC--GFPACRPCYEYERREG----TQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSS--CCCCCHHHHHHHHHTS----CSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeecc--CChhhHHHHHHHHhcc----CccccccCCccc
Confidence 45579999986543 2234455555421 1238899999888764 379999999997
No 69
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.22 E-value=1.5 Score=33.09 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=36.9
Q ss_pred CCCCCcceEeccCCCCCCCccccc-cccCCCCcccchhhHHHHHHhhc-Ccccccccc--ccce
Q 023590 51 NGSLPCCRICLENDGEPDDELISP-CMCKGTQQFVHRACLDHWRSVKE-GFAFSHCTT--CKAQ 110 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsP-C~CkGSlkyVH~~CL~~Wi~~s~-~~~~~~CEl--Ck~~ 110 (280)
....-.|-||++- -.+|.+.| |. +-.-+.|+.+|+...+ ......|++ |...
T Consensus 4 ~~~~~~CPI~~~~---~~dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 4 GSSGFTCPITKEE---MKKPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CSSCCBCTTTCSB---CSSEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CCcEeECcCcCch---hcCCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3456789999964 34788886 64 3467999999998652 113468999 8766
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=77.03 E-value=1 Score=33.63 Aligned_cols=55 Identities=24% Similarity=0.568 Sum_probs=36.8
Q ss_pred CCCCcceEeccCCCCCCCccc--cccccCCCCcccchhhHHHHHHhh--cCc-ccccccc--ccceeee
Q 023590 52 GSLPCCRICLENDGEPDDELI--SPCMCKGTQQFVHRACLDHWRSVK--EGF-AFSHCTT--CKAQFHL 113 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LI--sPC~CkGSlkyVH~~CL~~Wi~~s--~~~-~~~~CEl--Ck~~y~~ 113 (280)
++...|-||++.-. ....+ .||. +..-+.||.+++..+ .+. ....|+. |+..+.+
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~ 64 (94)
T 1wim_A 3 SGSSGCKLCLGEYP--VEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHL 64 (94)
T ss_dssp CSBCCCSSSCCCCB--GGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEE
T ss_pred CCCcCCcccCcccc--cccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCCcc
Confidence 44568999996432 22333 3775 458899999999864 221 3479999 9988543
No 71
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=76.79 E-value=0.68 Score=33.73 Aligned_cols=53 Identities=13% Similarity=0.310 Sum_probs=35.6
Q ss_pred cCCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccce
Q 023590 49 IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (280)
Q Consensus 49 ~~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~ 110 (280)
..+.....|.||.++ +.|+. |.+=-+..|..||.-.+.... ...+.|..|...
T Consensus 7 ~~~~~~~~C~vC~~~-----~~ll~---Cd~C~~~~H~~Cl~P~l~~~P-~g~W~C~~C~~~ 59 (66)
T 2lri_C 7 QNLAPGARCGVCGDG-----TDVLR---CTHCAAAFHWRCHFPAGTSRP-GTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTCCCTTTSCC-----TTCEE---CSSSCCEECHHHHCTTTCCCC-SSSCCCTTTTTC
T ss_pred cCCCCCCCcCCCCCC-----CeEEE---CCCCCCceecccCCCccCcCC-CCCEECccccCC
Confidence 344555679999853 23543 445568899999977765432 246999999753
No 72
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=71.18 E-value=1.5 Score=37.73 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=39.3
Q ss_pred CCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 50 ~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
...+.-.|-||++-- .+|.+.||. +-.=+.|+.+|+...+ ..|++|+.++...
T Consensus 102 ~ip~~f~CPI~~elm---~DPV~~~~G-----htfer~~I~~~l~~~~----~tcP~t~~~l~~~ 154 (179)
T 2f42_A 102 EIPDYLCGKISFELM---REPCITPSG-----ITYDRKDIEEHLQRVG----HFDPVTRSPLTQD 154 (179)
T ss_dssp CCCGGGBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHTC----SBCTTTCCBCCGG
T ss_pred CCcHhhcccCccccC---CCCeECCCC-----CEECHHHHHHHHHhCC----CCCCCCcCCCChh
Confidence 345567899998643 478999863 3467999999998643 2699999887653
No 73
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=66.44 E-value=3.3 Score=30.43 Aligned_cols=55 Identities=16% Similarity=0.320 Sum_probs=34.7
Q ss_pred cCCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 49 IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 49 ~~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
....+...|.||..++++.++.++. |++=-+.+|+.||.-=. .....+.|+.|..
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPY---IPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEE---CSSSCCEEEHHHHTCSS---CCSSCCCCHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEE---CCCCCCccccccCCCCc---CCCCCcCCccCcC
Confidence 3445567899999765444455553 33445689999985211 1124689999864
No 74
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=64.16 E-value=3.8 Score=31.19 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=33.6
Q ss_pred CCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccce
Q 023590 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~ 110 (280)
..+...|.||..++.+.++.|+. |++=.+.+|+.||.-=. .....+.|..|...
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~---CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~ 75 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILF---CDMCNLAVHQECYGVPY---IPEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEE---CSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHH
T ss_pred CCCCCcCCcCCCCCCCCCCCEEE---CCCCCchhhcccCCCCc---cCCCceECccccCc
Confidence 34557899999765333445543 33445679999985311 11246899999654
No 75
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=60.19 E-value=4.7 Score=29.51 Aligned_cols=51 Identities=22% Similarity=0.476 Sum_probs=31.6
Q ss_pred CCCCCCcceEeccCCCCCCCcccc--ccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 50 ENGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 50 ~~~~~~~CRIC~~~~~e~~~~LIs--PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
.+.+...| ||.+.. .+.+|. =|.|. ..+.|..|+. |... ....+.|+.|..
T Consensus 12 d~~~~~~C-~C~~~~---~g~MI~CD~~~C~--~~wfH~~Cvg--l~~~-p~g~w~Cp~C~~ 64 (71)
T 1wen_A 12 DPNEPTYC-LCHQVS---YGEMIGCDNPDCS--IEWFHFACVG--LTTK-PRGKWFCPRCSQ 64 (71)
T ss_dssp CTTSCCCS-TTCCCS---CSSEECCSCSSCS--CCCEETTTTT--CSSC-CSSCCCCTTTSS
T ss_pred CCCCCCEE-ECCCCC---CCCEeEeeCCCCC--CccEecccCC--cCcC-CCCCEECCCCCc
Confidence 34456678 898643 245664 12242 2799999997 4332 225789999965
No 76
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=57.56 E-value=3.3 Score=29.17 Aligned_cols=57 Identities=25% Similarity=0.423 Sum_probs=35.2
Q ss_pred CCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhh--cCccccccccccce
Q 023590 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVK--EGFAFSHCTTCKAQ 110 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s--~~~~~~~CElCk~~ 110 (280)
+++...|.+|..+..+.++.|+. |.+=-+.+|+.||.-=+... .....+.|..|...
T Consensus 3 ~~~~~~C~vC~~~~~~~~~~ll~---Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 3 SGSSGVCTICQEEYSEAPNEMVI---CDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCCBSSSCCCCCBTTBCEEE---CSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEE---CCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 46678999999764333455543 34445779999986432221 01246899998653
No 77
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=51.72 E-value=1 Score=34.24 Aligned_cols=59 Identities=15% Similarity=0.356 Sum_probs=37.8
Q ss_pred CCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHh---hcCccccccccccceeeee
Q 023590 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSV---KEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~---s~~~~~~~CElCk~~y~~~ 114 (280)
....|.+|..+..+.++.|+. |++=-+..|+.||.-=+.. +.....+.|..|....+..
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~---CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEE---CSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CCCcCCCCCCCCCCCCCceEE---CCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 456899999765433456654 4444577999998654432 1122468999997765543
No 78
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=48.10 E-value=11 Score=34.51 Aligned_cols=53 Identities=19% Similarity=0.350 Sum_probs=36.6
Q ss_pred CCCCCcceEeccCCCCCCCcccc-ccccCCCCcccchhhHHHHHHhhcCcccccccc--ccceeeee
Q 023590 51 NGSLPCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTT--CKAQFHLR 114 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIs-PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CEl--Ck~~y~~~ 114 (280)
....-.|-||++-- .+|..+ .|. +-.=+.|+.+|+...+ ...|++ |+..+...
T Consensus 178 ~~~el~CPIcl~~f---~DPVts~~CG-----HsFcR~cI~~~~~~~~---~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 178 GKIELTCPITCKPY---EAPLISRKCN-----HVFDRDGIQNYLQGYT---TRDCPQAACSQVVSMR 233 (267)
T ss_dssp SBCCSBCTTTSSBC---SSEEEESSSC-----CEEEHHHHHHHSTTCS---CEECSGGGCSCEECGG
T ss_pred CceeeECcCccCcc---cCCeeeCCCC-----CcccHHHHHHHHHhCC---CCCCCcccccCcCchh
Confidence 34556899999642 355553 443 3466889999997542 479999 99987654
No 79
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=45.72 E-value=12 Score=30.79 Aligned_cols=50 Identities=22% Similarity=0.428 Sum_probs=33.7
Q ss_pred CCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHH------HhhcCcccccccccc
Q 023590 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWR------SVKEGFAFSHCTTCK 108 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi------~~s~~~~~~~CElCk 108 (280)
.+....|++|.++ +.|+ -|++-.+-.|.+||.+=+ +.....+.+.|..|.
T Consensus 54 Dg~~~~C~vC~dG-----G~Ll---cCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~ 109 (129)
T 3ql9_A 54 DGMDEQCRWCAEG-----GNLI---CCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH 109 (129)
T ss_dssp TSCBSSCTTTCCC-----SEEE---ECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred CCCCCcCeecCCC-----CeeE---ecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence 4566789999965 3455 234556889999998752 221123579999993
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=40.44 E-value=5.2 Score=30.97 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHH
Q 023590 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRS 94 (280)
Q Consensus 50 ~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~ 94 (280)
+..+.+.|.||.++.+ .++|+. |++=-+..|..||.-...
T Consensus 3 ~~~~~~~C~~C~~~g~--~~~ll~---C~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGD--LLDQFF---CTTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCCCSCBTTTCCCCC--TTTSEE---CSSSCCEECTTTTTCCCC
T ss_pred CCCCCCCCcCCCCCCC--CcCCeE---CCCCCCCcChHHhCCccc
Confidence 4567789999987532 244552 344457899999976553
No 81
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=37.74 E-value=3.8 Score=28.92 Aligned_cols=50 Identities=22% Similarity=0.475 Sum_probs=29.4
Q ss_pred CCCCCcceEeccCCCCCCCcccc--ccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 51 NGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIs--PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
+.+...| ||.+.. .+.+|. -|.|. ..+.|..|+. +.... ...+.|+.|..
T Consensus 7 ~~e~~~C-~C~~~~---~g~mi~CD~cdC~--~~wfH~~Cvg--l~~~p-~g~w~C~~C~~ 58 (60)
T 2vnf_A 7 PNEPTYC-LCHQVS---YGEMIGCDNPDCS--IEWFHFACVG--LTTKP-RGKWFCPRCSQ 58 (60)
T ss_dssp --CCEET-TTTEEC---CSEEEECSCTTCS--SCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCCCEE-ECCCcC---CCCEEEeCCCCCC--CceEehhcCC--CCcCC-CCCEECcCccC
Confidence 3445667 888643 245663 22242 2789999997 44332 25688988854
No 82
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=36.42 E-value=12 Score=29.28 Aligned_cols=35 Identities=34% Similarity=0.765 Sum_probs=24.0
Q ss_pred CCCcceEeccCCCC----CCCccccccccCCCCcccchhhHH
Q 023590 53 SLPCCRICLENDGE----PDDELISPCMCKGTQQFVHRACLD 90 (280)
Q Consensus 53 ~~~~CRIC~~~~~e----~~~~LIsPC~CkGSlkyVH~~CL~ 90 (280)
..++|.+|+.++.. ..++||. |++=-+..|..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~---C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELIS---CADCGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEE---CTTTCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceE---hhhcCCCCCCchhc
Confidence 46789999965421 2356774 44456789999995
No 83
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=35.51 E-value=13 Score=25.99 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=32.9
Q ss_pred CcceEeccCCCCCCCcccc-ccccCCCCcccchhhHHHHHHhhcCccccccccccceeeee
Q 023590 55 PCCRICLENDGEPDDELIS-PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 55 ~~CRIC~~~~~e~~~~LIs-PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
-.|-||++-- .+|.++ ||. .-.=+.|+++|+...+ .|++++.+....
T Consensus 4 ~~CpIs~~~m---~dPV~~~~sG-----~~yer~~I~~~l~~~~-----~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVP---RRPVLSPKSR-----TIFEKSLLEQYVKDTG-----NDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCC---SSEEEETTTT-----EEEEHHHHHHHHHHHS-----BCTTTCCBCCGG
T ss_pred EEecCCCCCC---CCCEEeCCCC-----cEEcHHHHHHHHHhCC-----CCcCCcCCCChh
Confidence 4688887643 367776 432 3467899999998642 599999887644
No 84
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=34.26 E-value=8.1 Score=27.19 Aligned_cols=49 Identities=22% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
.+...|.+|.++ +.++. |++=-+..|..||.-=+... ....+.|..|..
T Consensus 9 ~~~~~C~vC~~~-----g~ll~---CD~C~~~fH~~Cl~p~l~~~-p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG-----GEIIL---CDTCPRAYHMVCLDPDMEKA-PEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC-----SSEEE---CSSSSCEEEHHHHCTTCCSC-CCSSCCCTTGGG
T ss_pred CCCCCCccCCCC-----CcEEE---CCCCChhhhhhccCCCCCCC-CCCceECccccc
Confidence 445689999863 23443 44556789999987533322 224689999965
No 85
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=32.94 E-value=13 Score=28.49 Aligned_cols=49 Identities=20% Similarity=0.444 Sum_probs=29.5
Q ss_pred CCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
+..-| ||.... .++.+|. |.+=.++.|..|+.- ......+.+.|+.|+-
T Consensus 27 d~vrC-iC~~~~--~~~~mi~---Cd~C~~w~H~~C~~~--~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTH--DDGYMIC---CDKCSVWQHIDCMGI--DRQHIPDTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCS--CSSCEEE---BTTTCBEEETTTTTC--CTTSCCSSBCCTTTSS
T ss_pred CCEEe-ECCCcc--CCCcEEE---cCCCCCcCcCcCCCC--CccCCCCCEECCCCcC
Confidence 33456 786542 3456765 344468999999842 2121225689999963
No 86
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=31.62 E-value=4.7 Score=34.63 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=33.9
Q ss_pred CCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccceee
Q 023590 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQFH 112 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y~ 112 (280)
+...|.+|..++ .++. |+|--+..|..||.--+.... ...+.|..|...-.
T Consensus 6 ~~~~C~~C~~~g-----~ll~---Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNGG-----DLLC---CEKCPKVFHLTCHVPTLLSFP-SGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCCE-----EEEE---CSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCC-----ceEE---cCCCCCccCCccCCCCCCCCC-CCCEEeCceeCccc
Confidence 456799998542 3443 566678899999865544321 24699999976543
No 87
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=29.65 E-value=11 Score=29.01 Aligned_cols=50 Identities=18% Similarity=0.404 Sum_probs=30.8
Q ss_pred CCCCCcceEeccCCCCCCCcccc--ccccCCCCcccchhhHHHHHHhhcCcccccccc-ccc
Q 023590 51 NGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTT-CKA 109 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIs--PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CEl-Ck~ 109 (280)
..+...| ||.+.. .+.+|. -|.|. ..|.|..|+. |... ....+.|+. |..
T Consensus 23 ~~~~~yC-iC~~~~---~g~MI~CD~c~C~--~eWfH~~CVg--l~~~-p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 23 NQEEVYC-FCRNVS---YGPMVACDNPACP--FEWFHYGCVG--LKQA-PKGKWYCSKDCKE 75 (90)
T ss_dssp -CCSCCS-TTTCCC---SSSEECCCSSSCS--CSCEETTTSS--CSSC-TTSCCCSSHHHHH
T ss_pred CCCCcEE-EeCCCC---CCCEEEecCCCCc--cccCcCccCC--CCcC-CCCCccCChhhcc
Confidence 3455678 898643 235663 33443 3799999986 3322 125799999 863
No 88
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=29.10 E-value=6.9 Score=32.84 Aligned_cols=49 Identities=20% Similarity=0.385 Sum_probs=32.3
Q ss_pred CCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccce
Q 023590 53 SLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (280)
Q Consensus 53 ~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~ 110 (280)
+...|.+|.+++ .++ .|++--+..|..||.--+.... ...+.|..|...
T Consensus 3 ~~~~C~~C~~~g-----~ll---~Cd~C~~~~H~~C~~p~l~~~p-~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNGG-----ELL---CCEKCPKVFHLSCHVPTLTNFP-SGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCCS-----SCE---ECSSSSCEECTTTSSSCCSSCC-SSCCCCTTTSCS
T ss_pred CCCccccCCCCC-----eee---ecCCCCcccCccccCCCCCCCC-CCCEECccccCc
Confidence 456799998542 243 2555568899999865444321 246999999754
No 89
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=27.98 E-value=6.9 Score=27.86 Aligned_cols=50 Identities=20% Similarity=0.465 Sum_probs=29.6
Q ss_pred CCCCCcceEeccCCCCCCCcccc--ccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 51 NGSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIs--PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
+.+...| ||.+.. .+.+|. -|.|+ ..+.|..|+. |... ....+.|+.|..
T Consensus 8 ~~e~~yC-~C~~~~---~g~MI~CD~c~C~--~~WfH~~Cvg--l~~~-p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 8 PNEPTYC-LCNQVS---YGEMIGCDNEQCP--IEWFHFSCVS--LTYK-PKGKWYCPKCRG 59 (62)
T ss_dssp --CCEET-TTTEEC---CSEEEECSCTTCS--SCEEETGGGT--CSSC-CSSCCCCHHHHT
T ss_pred CCCCcEE-ECCCCC---CCCeeeeeCCCCC--cccEecccCC--cCcC-CCCCEECcCccc
Confidence 3455677 888642 245664 23343 3899999987 3332 235688988854
No 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.50 E-value=4.6 Score=27.85 Aligned_cols=51 Identities=22% Similarity=0.501 Sum_probs=31.3
Q ss_pred CCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 50 ENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 50 ~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
+..+...|.+|..+ +.|+. |++=.+..|..||.-=+... ....+.|..|..
T Consensus 5 ~~~~~~~C~vC~~~-----g~ll~---Cd~C~~~~H~~Cl~ppl~~~-p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS-----GQLLM---CDTCSRVYHLDCLDPPLKTI-PKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS-----SCCEE---CSSSSCEECSSSSSSCCCSC-CCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC-----CeEEE---cCCCCcceECccCCCCcCCC-CCCceEChhhhC
Confidence 34556789999864 23442 44556889999986433222 124678888853
No 91
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=26.95 E-value=8.9 Score=26.78 Aligned_cols=55 Identities=24% Similarity=0.453 Sum_probs=32.7
Q ss_pred CCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
+.+...|.||.... ++++.+|. |.+=..|.|..|+.-=...........|+.|..
T Consensus 3 ~~e~~~C~~C~~~~-~~~~~mI~---Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESY-AADEFWIC---CDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCC-CSSSCEEE---CSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCcc-CCCCCEEE---ccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 35566788998643 23455665 333358999999743221111124678888854
No 92
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.67 E-value=9.3 Score=26.87 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=28.9
Q ss_pred CCCCcceEeccCCCCCCCcccc--ccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 52 GSLPCCRICLENDGEPDDELIS--PCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIs--PC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
.+...| ||.+.. .+.+|. -|.|. ..+.|..|+. +.... ...+.|+.|..
T Consensus 7 ~e~~yC-~C~~~~---~g~mi~CD~~~C~--~~wfH~~Cvg--l~~~p-~~~w~Cp~C~~ 57 (59)
T 3c6w_A 7 NEPTYC-LCHQVS---YGEMIGCDNPDCP--IEWFHFACVD--LTTKP-KGKWFCPRCVQ 57 (59)
T ss_dssp -CCEET-TTTEEC---CSEEEECSCTTCS--SCEEETGGGT--CSSCC-SSCCCCHHHHC
T ss_pred CCCcEE-ECCCCC---CCCeeEeeCCCCC--CCCEecccCC--cccCC-CCCEECcCccC
Confidence 344567 887642 245664 22242 2699999987 44332 25688988853
No 93
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=23.45 E-value=26 Score=27.63 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=23.1
Q ss_pred cCCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHH
Q 023590 49 IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLD 90 (280)
Q Consensus 49 ~~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~ 90 (280)
....+...|.+|.++ ++| --|..++--+..|..||.
T Consensus 10 ~~~~~~~~C~~C~~~-----G~l-l~CD~~~Cp~~fH~~Cl~ 45 (107)
T 4gne_A 10 PKQMHEDYCFQCGDG-----GEL-VMCDKKDCPKAYHLLCLN 45 (107)
T ss_dssp CCCSSCSSCTTTCCC-----SEE-EECCSTTCCCEECTGGGT
T ss_pred CcCCCCCCCCcCCCC-----CcE-eEECCCCCCcccccccCc
Confidence 334556789999843 234 446522445789999997
No 94
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=23.27 E-value=37 Score=28.17 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=33.5
Q ss_pred CCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHh----h--cCcccccccccc
Q 023590 51 NGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSV----K--EGFAFSHCTTCK 108 (280)
Q Consensus 51 ~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~----s--~~~~~~~CElCk 108 (280)
.+....|++|.++. .|+ -|++=.+-.|..||..=+.. + .....+.|..|.
T Consensus 60 Dg~~d~C~vC~~GG-----~Ll---cCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG-----NLI---CCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCS-----SEE---ECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCC-----cEE---eCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 45678999999753 355 23344577999999866531 1 123569999995
No 95
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=23.10 E-value=12 Score=30.87 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=32.7
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccce
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQ 110 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~ 110 (280)
.+...| +|.... ++++.+|.=-.| .+|.|..|+.-=-......+...|+.|...
T Consensus 6 ~~~~~C-~C~~~~-~~~~~mi~Cd~C---~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPE-DESKFYIGCDRC---QNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEEC-CTTSCEEECTTT---CCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCC-CCCCCEeECCCC---CchhChhhcCCchhhccCccCeecCCCcch
Confidence 455678 998643 234556653345 599999998422121112357899999754
No 96
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=22.48 E-value=26 Score=33.53 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=32.7
Q ss_pred CCccccccccCCCCcccchhhH--HHHHHhhcCccccccccccceeeee
Q 023590 68 DDELISPCMCKGTQQFVHRACL--DHWRSVKEGFAFSHCTTCKAQFHLR 114 (280)
Q Consensus 68 ~~~LIsPC~CkGSlkyVH~~CL--~~Wi~~s~~~~~~~CElCk~~y~~~ 114 (280)
...+..||+- ....|-+|. +.|+.......++.|++|+....++
T Consensus 256 ~~ri~~PvRg---~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~ 301 (371)
T 3i2d_A 256 YTRMKYPSKS---INCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE 301 (371)
T ss_dssp SSBCSSEEEE---TTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG
T ss_pred cccccccCcC---CcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH
Confidence 3567899886 577899885 5577765445689999998877654
No 97
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=22.04 E-value=18 Score=26.12 Aligned_cols=52 Identities=17% Similarity=0.425 Sum_probs=32.0
Q ss_pred cCCCCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCcccccccccc
Q 023590 49 IENGSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCK 108 (280)
Q Consensus 49 ~~~~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk 108 (280)
..+.+...| ||.... .++.+|.==.| ..|.|-.|+. +......+...|+.|.
T Consensus 14 ~~~~~~~~C-iC~~~~--~~~~MIqCd~C---~~WfH~~Cvg--i~~~~~~~~~~C~~C~ 65 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPF--AGRPMIECNEC---HTWIHLSCAK--IRKSNVPEVFVCQKCR 65 (68)
T ss_dssp CTTTTCCCS-TTCCCC--TTCCEEECTTT---CCEEETTTTT--CCTTSCCSSCCCHHHH
T ss_pred CCCCCceEe-ECCCcC--CCCCEEECCCC---CccccccccC--cCcccCCCcEECCCCC
Confidence 444566778 897543 34567763345 5899999974 2221122567888885
No 98
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=21.40 E-value=31 Score=24.69 Aligned_cols=54 Identities=17% Similarity=0.409 Sum_probs=33.2
Q ss_pred CCCCcceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCcccccccccccee
Q 023590 52 GSLPCCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKAQF 111 (280)
Q Consensus 52 ~~~~~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~~y 111 (280)
.+...|.||.... .++.+|. |.+=-.+.|..||.-=.... ....+.|+.|....
T Consensus 16 ~~~~~C~~C~~~~--~~~~mi~---CD~C~~wfH~~Cv~~~~~~~-~~~~w~C~~C~~~~ 69 (75)
T 2k16_A 16 NQIWICPGCNKPD--DGSPMIG---CDDCDDWYHWPCVGIMAAPP-EEMQWFCPKCANKI 69 (75)
T ss_dssp CEEECBTTTTBCC--SSCCEEE---CSSSSSEEEHHHHTCSSCCC-SSSCCCCTTTHHHH
T ss_pred CCCcCCCCCCCCC--CCCCEEE---cCCCCcccccccCCCCccCC-CCCCEEChhccCch
Confidence 4456799998653 2344554 44556899999985322211 11468999996644
No 99
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=20.36 E-value=19 Score=23.93 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=28.5
Q ss_pred cceEeccCCCCCCCccccccccCCCCcccchhhHHHHHHhhcCccccccccccc
Q 023590 56 CCRICLENDGEPDDELISPCMCKGTQQFVHRACLDHWRSVKEGFAFSHCTTCKA 109 (280)
Q Consensus 56 ~CRIC~~~~~e~~~~LIsPC~CkGSlkyVH~~CL~~Wi~~s~~~~~~~CElCk~ 109 (280)
.|.||...+ ..+.++. |++=.+..|..||.-=+... ....+.|..|..
T Consensus 2 ~C~vC~~~~--~~~~ll~---Cd~C~~~~H~~Cl~p~l~~~-P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG--EDDKLIL---CDECNKAFHLFCLRPALYEV-PDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS--CCSCCEE---CTTTCCEECHHHHCTTCCSC-CSSCCSCTTTSC
T ss_pred CCCCCCCCC--CCCCEEE---CCCCChhhCcccCCCCcCCC-CCCcEECcCccc
Confidence 588898653 2334442 34556789999985312211 124688998854
Done!