Query 023592
Match_columns 280
No_of_seqs 126 out of 1192
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 05:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023592.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023592hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0656 ARA1 Aldo/keto reducta 100.0 6.7E-49 1.5E-53 338.8 21.8 218 2-266 43-268 (280)
2 COG0667 Tas Predicted oxidored 100.0 3.9E-48 8.5E-53 345.4 27.5 247 2-265 48-312 (316)
3 KOG1575 Voltage-gated shaker-l 100.0 7.2E-48 1.6E-52 338.4 24.8 256 2-267 59-330 (336)
4 TIGR01293 Kv_beta voltage-depe 100.0 1.3E-45 2.9E-50 330.8 26.0 250 1-260 43-316 (317)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 3.6E-45 7.8E-50 331.5 26.3 259 2-270 58-340 (346)
6 PRK10625 tas putative aldo-ket 100.0 2.1E-44 4.5E-49 326.8 27.4 239 11-262 64-339 (346)
7 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.1E-44 2.3E-49 320.0 21.9 239 1-261 31-282 (283)
8 PRK11172 dkgB 2,5-diketo-D-glu 100.0 6.1E-44 1.3E-48 312.6 24.0 215 1-264 30-254 (267)
9 PLN02587 L-galactose dehydroge 100.0 3.6E-42 7.7E-47 308.3 26.1 237 2-265 46-303 (314)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 4.1E-42 8.9E-47 303.7 25.5 229 2-259 44-284 (285)
11 KOG1577 Aldo/keto reductase fa 100.0 4E-42 8.6E-47 296.9 20.0 216 5-264 46-287 (300)
12 PRK10376 putative oxidoreducta 100.0 7.3E-41 1.6E-45 296.5 24.6 209 11-263 67-289 (290)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 4.3E-41 9.2E-46 295.7 22.5 215 1-263 42-263 (275)
14 PRK14863 bifunctional regulato 100.0 8.7E-40 1.9E-44 289.5 20.7 227 1-259 46-279 (292)
15 COG4989 Predicted oxidoreducta 100.0 2.8E-38 6.1E-43 262.7 19.1 218 9-261 56-292 (298)
16 COG1453 Predicted oxidoreducta 100.0 8.6E-36 1.9E-40 260.5 18.3 216 10-267 60-290 (391)
17 KOG1576 Predicted oxidoreducta 100.0 6.8E-33 1.5E-37 232.3 20.9 236 10-273 80-335 (342)
18 KOG3023 Glutamate-cysteine lig 98.1 1.1E-05 2.5E-10 67.7 6.8 72 73-145 155-227 (285)
19 PRK10558 alpha-dehydro-beta-de 89.6 4.3 9.3E-05 35.3 10.1 68 79-147 9-78 (256)
20 PF07021 MetW: Methionine bios 89.2 1.3 2.8E-05 36.8 6.1 104 45-151 63-172 (193)
21 cd03174 DRE_TIM_metallolyase D 86.8 5.6 0.00012 34.3 9.2 106 36-145 15-135 (265)
22 TIGR03239 GarL 2-dehydro-3-deo 86.2 8.5 0.00018 33.3 9.8 66 81-147 4-71 (249)
23 PRK10128 2-keto-3-deoxy-L-rham 86.1 11 0.00023 33.1 10.4 67 80-147 9-77 (267)
24 COG1140 NarY Nitrate reductase 85.3 0.44 9.6E-06 43.2 1.4 55 87-141 264-318 (513)
25 PRK07535 methyltetrahydrofolat 80.8 38 0.00082 29.6 12.0 100 38-146 23-124 (261)
26 PRK13352 thiamine biosynthesis 80.7 49 0.0011 30.8 13.4 86 36-143 139-224 (431)
27 TIGR00190 thiC thiamine biosyn 80.3 50 0.0011 30.7 13.3 86 36-143 136-221 (423)
28 TIGR02311 HpaI 2,4-dihydroxyhe 79.7 31 0.00067 29.8 10.7 66 80-146 3-70 (249)
29 PRK05692 hydroxymethylglutaryl 78.3 20 0.00043 31.8 9.3 105 37-144 23-139 (287)
30 PRK00208 thiG thiazole synthas 76.2 51 0.0011 28.5 14.1 108 34-144 70-181 (250)
31 PRK13958 N-(5'-phosphoribosyl) 72.3 14 0.0003 31.1 6.4 68 49-120 16-84 (207)
32 PF05690 ThiG: Thiazole biosyn 72.1 24 0.00053 30.3 7.7 75 12-89 51-125 (247)
33 TIGR01378 thi_PPkinase thiamin 71.3 44 0.00095 27.9 9.3 39 207-245 72-110 (203)
34 cd00423 Pterin_binding Pterin 70.9 44 0.00095 29.0 9.5 103 37-146 21-128 (258)
35 PRK13753 dihydropteroate synth 70.0 61 0.0013 28.6 10.1 102 37-147 22-128 (279)
36 PRK04452 acetyl-CoA decarbonyl 69.8 38 0.00082 30.5 8.9 93 50-147 85-184 (319)
37 TIGR01496 DHPS dihydropteroate 69.2 68 0.0015 27.8 10.3 101 37-145 20-125 (257)
38 cd04728 ThiG Thiazole synthase 68.5 78 0.0017 27.4 14.0 109 33-144 69-181 (248)
39 COG0135 TrpF Phosphoribosylant 68.0 46 0.001 28.0 8.6 82 50-142 18-102 (208)
40 PF00809 Pterin_bind: Pterin b 67.9 12 0.00025 31.5 5.1 91 50-147 28-125 (210)
41 PLN02746 hydroxymethylglutaryl 67.6 40 0.00086 30.8 8.7 101 40-144 67-181 (347)
42 PLN02489 homocysteine S-methyl 65.7 1.1E+02 0.0023 27.8 13.8 72 21-96 130-217 (335)
43 PRK01045 ispH 4-hydroxy-3-meth 65.2 42 0.00091 29.9 8.2 109 87-242 156-275 (298)
44 TIGR00381 cdhD CO dehydrogenas 64.7 1.2E+02 0.0026 28.1 12.1 107 40-150 128-252 (389)
45 TIGR02026 BchE magnesium-proto 64.7 1.4E+02 0.0029 28.7 13.3 47 37-87 222-268 (497)
46 PLN02363 phosphoribosylanthran 64.3 24 0.00053 30.7 6.5 75 38-120 56-131 (256)
47 TIGR01228 hutU urocanate hydra 63.9 18 0.00038 34.4 5.7 92 20-120 156-259 (545)
48 PRK05414 urocanate hydratase; 63.8 19 0.0004 34.4 5.9 92 20-120 165-268 (556)
49 TIGR01290 nifB nitrogenase cof 63.5 1.4E+02 0.0029 28.3 13.0 111 36-150 59-199 (442)
50 PRK00730 rnpA ribonuclease P; 63.4 45 0.00097 26.1 7.1 62 21-86 47-110 (138)
51 PRK13796 GTPase YqeH; Provisio 62.6 78 0.0017 29.0 9.8 86 20-107 96-181 (365)
52 PRK01222 N-(5'-phosphoribosyl) 62.1 24 0.00053 29.6 5.9 84 50-142 19-104 (210)
53 COG2022 ThiG Uncharacterized e 61.8 42 0.00091 28.8 7.1 55 35-89 78-132 (262)
54 cd01948 EAL EAL domain. This d 60.3 89 0.0019 25.9 9.3 102 40-145 98-209 (240)
55 PF02401 LYTB: LytB protein; 60.3 36 0.00078 30.1 6.8 116 79-242 145-274 (281)
56 CHL00162 thiG thiamin biosynth 58.5 69 0.0015 27.9 8.0 55 35-89 79-139 (267)
57 PF11020 DUF2610: Domain of un 58.1 45 0.00098 23.4 5.5 33 185-217 44-76 (82)
58 COG2102 Predicted ATPases of P 57.9 36 0.00079 28.9 6.1 98 73-210 75-177 (223)
59 TIGR01278 DPOR_BchB light-inde 57.3 1.3E+02 0.0028 29.0 10.7 86 20-112 85-191 (511)
60 cd07948 DRE_TIM_HCS Saccharomy 56.8 87 0.0019 27.3 8.7 100 37-144 19-131 (262)
61 COG2040 MHT1 Homocysteine/sele 56.7 1.4E+02 0.0031 26.4 11.7 104 38-146 128-241 (300)
62 TIGR00216 ispH_lytB (E)-4-hydr 56.7 63 0.0014 28.5 7.7 117 78-242 145-273 (280)
63 PRK02866 cyanate hydratase; Va 55.0 22 0.00048 28.2 4.1 63 196-260 8-70 (147)
64 PRK12360 4-hydroxy-3-methylbut 55.0 71 0.0015 28.2 7.8 115 80-242 150-274 (281)
65 PRK14461 ribosomal RNA large s 54.9 1.7E+02 0.0037 27.0 10.4 89 60-149 231-352 (371)
66 PRK09856 fructoselysine 3-epim 54.3 68 0.0015 27.6 7.7 20 128-147 93-112 (275)
67 cd03315 MLE_like Muconate lact 54.1 60 0.0013 28.1 7.3 73 77-150 169-243 (265)
68 cd07944 DRE_TIM_HOA_like 4-hyd 54.0 1.1E+02 0.0023 26.8 8.8 105 36-144 16-128 (266)
69 PRK11613 folP dihydropteroate 53.2 1.1E+02 0.0024 27.0 8.8 100 38-145 36-140 (282)
70 PRK01313 rnpA ribonuclease P; 52.6 89 0.0019 24.1 7.1 63 20-85 47-113 (129)
71 cd00740 MeTr MeTr subgroup of 52.5 1.6E+02 0.0034 25.6 10.9 106 37-150 23-131 (252)
72 PRK00499 rnpA ribonuclease P; 52.5 87 0.0019 23.4 7.0 64 20-86 38-104 (114)
73 cd00739 DHPS DHPS subgroup of 52.3 1.6E+02 0.0034 25.6 14.1 102 37-145 21-127 (257)
74 cd03319 L-Ala-DL-Glu_epimerase 51.8 70 0.0015 28.4 7.5 73 77-150 217-291 (316)
75 PF00682 HMGL-like: HMGL-like 51.6 96 0.0021 26.2 8.0 98 37-141 11-124 (237)
76 TIGR03597 GTPase_YqeH ribosome 51.2 1.3E+02 0.0027 27.6 9.1 86 20-107 90-175 (360)
77 PRK03459 rnpA ribonuclease P; 51.1 94 0.002 23.7 7.0 64 20-86 48-114 (122)
78 cd07943 DRE_TIM_HOA 4-hydroxy- 50.1 1.4E+02 0.0029 25.9 8.9 104 37-144 19-131 (263)
79 PF01175 Urocanase: Urocanase; 49.7 38 0.00083 32.3 5.5 87 19-120 154-258 (546)
80 PRK03031 rnpA ribonuclease P; 48.9 1E+02 0.0023 23.3 7.0 64 21-86 48-114 (122)
81 COG2987 HutU Urocanate hydrata 48.7 47 0.001 31.3 5.8 93 20-120 165-268 (561)
82 PF03102 NeuB: NeuB family; I 48.3 85 0.0018 27.1 7.1 31 213-245 105-135 (241)
83 PF07994 NAD_binding_5: Myo-in 48.1 2E+02 0.0043 25.7 9.5 133 39-223 131-273 (295)
84 cd00308 enolase_like Enolase-s 47.9 1.7E+02 0.0036 24.6 10.3 87 58-150 120-208 (229)
85 COG1121 ZnuC ABC-type Mn/Zn tr 47.9 1.1E+02 0.0023 26.7 7.6 67 38-107 113-207 (254)
86 COG1751 Uncharacterized conser 47.6 1.4E+02 0.0031 23.9 7.5 85 61-147 2-92 (186)
87 PRK08195 4-hyroxy-2-oxovalerat 46.3 2.3E+02 0.005 25.7 10.2 103 35-144 20-134 (337)
88 PRK04390 rnpA ribonuclease P; 45.6 1.3E+02 0.0028 22.7 7.2 64 21-86 45-110 (120)
89 PRK13803 bifunctional phosphor 44.8 1.3E+02 0.0029 29.7 8.8 96 38-142 12-108 (610)
90 PRK14461 ribosomal RNA large s 44.8 1.1E+02 0.0023 28.3 7.5 101 20-121 105-236 (371)
91 TIGR03822 AblA_like_2 lysine-2 43.8 2.3E+02 0.005 25.4 9.5 100 38-142 151-262 (321)
92 PRK14466 ribosomal RNA large s 42.9 1.3E+02 0.0028 27.5 7.7 97 20-121 101-215 (345)
93 COG0673 MviM Predicted dehydro 42.6 79 0.0017 28.0 6.4 71 196-268 41-121 (342)
94 PF11242 DUF2774: Protein of u 42.3 36 0.00079 22.6 3.0 24 196-219 14-37 (63)
95 PRK01492 rnpA ribonuclease P; 41.8 1.5E+02 0.0033 22.4 7.1 62 21-84 47-114 (118)
96 TIGR01182 eda Entner-Doudoroff 41.8 89 0.0019 26.2 6.1 88 38-143 18-106 (204)
97 cd07939 DRE_TIM_NifV Streptomy 41.5 2.3E+02 0.005 24.4 11.9 99 36-142 16-127 (259)
98 TIGR01428 HAD_type_II 2-haloal 41.3 81 0.0017 25.6 5.8 95 42-139 61-163 (198)
99 PRK07945 hypothetical protein; 41.0 2.8E+02 0.006 25.1 9.8 82 55-142 191-288 (335)
100 COG0773 MurC UDP-N-acetylmuram 40.7 1.2E+02 0.0027 28.7 7.4 28 202-229 113-141 (459)
101 PF04263 TPK_catalytic: Thiami 40.7 72 0.0016 24.3 5.0 40 206-245 69-108 (123)
102 cd03770 SR_TndX_transposase Se 40.2 56 0.0012 25.3 4.4 44 43-86 54-97 (140)
103 TIGR03217 4OH_2_O_val_ald 4-hy 40.0 2.9E+02 0.0062 25.0 10.6 102 36-144 20-133 (333)
104 TIGR03822 AblA_like_2 lysine-2 40.0 2.8E+02 0.006 24.9 11.3 107 40-150 122-239 (321)
105 PF05368 NmrA: NmrA-like famil 39.8 1.3E+02 0.0028 25.0 7.0 85 56-150 21-106 (233)
106 PRK02910 light-independent pro 39.5 3.6E+02 0.0078 26.0 13.3 83 22-112 87-191 (519)
107 cd03322 rpsA The starvation se 39.4 1.7E+02 0.0037 26.6 8.2 70 77-147 203-274 (361)
108 COG4981 Enoyl reductase domain 39.3 2.7E+02 0.0058 27.3 9.2 113 36-149 69-224 (717)
109 COG0325 Predicted enzyme with 38.7 2E+02 0.0044 24.6 7.7 89 21-109 119-212 (228)
110 TIGR00673 cynS cyanate hydrata 38.4 50 0.0011 26.2 3.8 63 196-260 11-73 (150)
111 COG0820 Predicted Fe-S-cluster 38.1 3.1E+02 0.0068 25.1 9.3 76 73-149 238-330 (349)
112 TIGR00035 asp_race aspartate r 38.0 2.3E+02 0.0049 23.9 8.2 69 38-107 15-94 (229)
113 PRK10200 putative racemase; Pr 37.9 1.9E+02 0.0042 24.5 7.8 69 38-107 15-94 (230)
114 TIGR00676 fadh2 5,10-methylene 37.8 2.7E+02 0.006 24.2 14.3 98 37-141 70-186 (272)
115 COG0820 Predicted Fe-S-cluster 37.8 2.4E+02 0.0051 25.8 8.5 102 20-123 99-222 (349)
116 PRK06015 keto-hydroxyglutarate 37.8 1E+02 0.0023 25.7 5.9 88 38-143 14-102 (201)
117 COG2355 Zn-dependent dipeptida 37.7 3.1E+02 0.0067 24.7 9.4 30 227-258 269-299 (313)
118 TIGR00677 fadh2_euk methylenet 37.4 2.9E+02 0.0062 24.3 14.1 98 37-141 71-190 (281)
119 PRK00087 4-hydroxy-3-methylbut 37.4 1.3E+02 0.0027 30.1 7.4 118 80-245 147-275 (647)
120 PRK11840 bifunctional sulfur c 37.3 3.2E+02 0.0069 24.8 10.5 75 33-108 143-217 (326)
121 PRK14465 ribosomal RNA large s 37.0 2.2E+02 0.0049 25.9 8.3 99 20-120 103-219 (342)
122 PRK09427 bifunctional indole-3 36.9 1.1E+02 0.0023 29.2 6.4 66 50-121 273-339 (454)
123 PRK04820 rnpA ribonuclease P; 36.8 2.1E+02 0.0046 22.6 7.5 65 21-87 49-115 (145)
124 PRK08776 cystathionine gamma-s 36.7 1.9E+02 0.0042 26.8 8.1 78 73-150 109-187 (405)
125 cd00248 Mth938-like Mth938-lik 36.6 1.1E+02 0.0024 22.6 5.4 53 94-147 36-88 (109)
126 smart00052 EAL Putative diguan 36.5 2.4E+02 0.0053 23.2 8.5 100 41-145 100-210 (241)
127 PRK12410 glutamylglutaminyl-tR 36.4 1.5E+02 0.0032 28.1 7.2 60 38-106 46-105 (433)
128 PRK00396 rnpA ribonuclease P; 36.4 1.8E+02 0.0038 22.5 6.6 61 23-86 49-112 (130)
129 COG0761 lytB 4-Hydroxy-3-methy 36.2 2E+02 0.0043 25.6 7.4 44 196-242 228-277 (294)
130 COG1151 6Fe-6S prismane cluste 36.0 1.8E+02 0.0038 28.4 7.6 52 40-94 360-413 (576)
131 PF10668 Phage_terminase: Phag 35.8 71 0.0015 21.2 3.6 18 196-213 23-40 (60)
132 PRK12558 glutamyl-tRNA synthet 35.4 1.3E+02 0.0027 28.6 6.6 59 38-105 49-107 (445)
133 KOG1549 Cysteine desulfurase N 35.4 2.5E+02 0.0053 26.5 8.3 102 41-150 117-223 (428)
134 TIGR01502 B_methylAsp_ase meth 35.2 3E+02 0.0064 25.8 9.0 71 76-147 280-357 (408)
135 cd07995 TPK Thiamine pyrophosp 34.8 83 0.0018 26.2 4.9 40 206-245 75-114 (208)
136 TIGR00188 rnpA ribonuclease P 34.8 1.8E+02 0.004 21.3 6.7 62 20-84 41-104 (105)
137 PRK07328 histidinol-phosphatas 34.5 3E+02 0.0066 23.7 10.6 100 43-143 94-226 (269)
138 cd03318 MLE Muconate Lactonizi 34.4 2.7E+02 0.0059 25.2 8.7 73 77-150 228-302 (365)
139 PF01964 ThiC: ThiC family; I 34.4 87 0.0019 29.2 5.2 94 35-150 134-227 (420)
140 PRK14468 ribosomal RNA large s 34.2 3.6E+02 0.0078 24.5 10.2 102 20-122 91-212 (343)
141 COG1080 PtsA Phosphoenolpyruva 34.1 41 0.00088 32.7 3.2 66 208-276 433-505 (574)
142 COG1149 MinD superfamily P-loo 33.2 89 0.0019 27.5 4.8 89 50-150 156-251 (284)
143 PRK00164 moaA molybdenum cofac 33.2 3.5E+02 0.0076 24.1 9.7 70 73-142 143-227 (331)
144 cd07938 DRE_TIM_HMGL 3-hydroxy 33.0 2E+02 0.0043 25.2 7.2 99 41-143 20-132 (274)
145 PRK15072 bifunctional D-altron 32.9 3.2E+02 0.0069 25.3 8.9 70 77-147 246-317 (404)
146 PF01081 Aldolase: KDPG and KH 32.8 1.2E+02 0.0025 25.3 5.4 58 78-143 48-106 (196)
147 PF14871 GHL6: Hypothetical gl 32.6 45 0.00097 25.8 2.7 25 124-148 43-67 (132)
148 cd03316 MR_like Mandelate race 31.9 3E+02 0.0065 24.7 8.5 69 77-146 229-299 (357)
149 TIGR00284 dihydropteroate synt 31.8 4.8E+02 0.01 25.2 11.0 94 40-145 165-258 (499)
150 COG2185 Sbm Methylmalonyl-CoA 31.7 2.6E+02 0.0056 22.1 7.2 57 91-152 19-77 (143)
151 KOG0256 1-aminocyclopropane-1- 31.4 1.7E+02 0.0037 27.4 6.5 41 110-150 227-271 (471)
152 TIGR01928 menC_lowGC/arch o-su 31.4 2E+02 0.0043 25.7 7.1 74 76-150 211-286 (324)
153 cd04742 NPD_FabD 2-Nitropropan 31.3 2.4E+02 0.0052 26.5 7.7 67 79-146 30-103 (418)
154 PRK13015 3-dehydroquinate dehy 31.1 2.4E+02 0.0053 22.3 6.6 78 36-122 25-104 (146)
155 cd00466 DHQase_II Dehydroquina 31.1 2.2E+02 0.0047 22.4 6.2 78 36-122 23-102 (140)
156 cd00338 Ser_Recombinase Serine 31.0 1E+02 0.0022 23.1 4.6 45 43-87 51-95 (137)
157 TIGR02660 nifV_homocitr homoci 31.0 4.1E+02 0.009 24.2 10.9 99 36-142 19-130 (365)
158 PRK06552 keto-hydroxyglutarate 31.0 1.7E+02 0.0037 24.6 6.2 88 38-143 23-114 (213)
159 PF13378 MR_MLE_C: Enolase C-t 30.9 1E+02 0.0022 22.5 4.3 54 95-150 3-57 (111)
160 PF13167 GTP-bdg_N: GTP-bindin 30.7 49 0.0011 24.1 2.5 66 192-261 7-79 (95)
161 PRK14456 ribosomal RNA large s 30.5 3.5E+02 0.0077 24.9 8.6 77 73-149 261-353 (368)
162 PRK08392 hypothetical protein; 30.5 3.2E+02 0.0069 22.7 10.2 90 45-143 78-179 (215)
163 TIGR03070 couple_hipB transcri 30.4 57 0.0012 20.2 2.6 22 196-217 5-26 (58)
164 PRK06424 transcription factor; 30.4 1.5E+02 0.0033 23.3 5.4 31 192-222 83-113 (144)
165 COG0626 MetC Cystathionine bet 30.4 2.5E+02 0.0054 26.2 7.6 81 73-153 112-194 (396)
166 cd06543 GH18_PF-ChiA-like PF-C 30.3 3.2E+02 0.007 24.2 8.1 51 36-86 86-136 (294)
167 PRK14895 gltX glutamyl-tRNA sy 30.1 2.7E+02 0.0058 27.0 7.9 61 38-106 51-111 (513)
168 PLN03228 methylthioalkylmalate 29.9 4.9E+02 0.011 25.2 9.7 104 36-147 102-231 (503)
169 KOG0059 Lipid exporter ABCA1 a 29.9 3E+02 0.0066 28.6 8.9 71 36-108 669-767 (885)
170 PHA02128 hypothetical protein 29.4 1.4E+02 0.0029 22.3 4.6 71 74-144 60-150 (151)
171 TIGR02080 O_succ_thio_ly O-suc 29.2 3E+02 0.0065 25.3 8.0 78 73-150 100-178 (382)
172 cd03327 MR_like_2 Mandelate ra 29.1 3.4E+02 0.0073 24.4 8.3 69 76-145 210-280 (341)
173 cd00537 MTHFR Methylenetetrahy 29.0 3.8E+02 0.0083 23.2 10.9 99 36-140 69-188 (274)
174 PRK14459 ribosomal RNA large s 28.9 4.7E+02 0.01 24.2 10.4 90 60-149 241-359 (373)
175 PRK14017 galactonate dehydrata 28.7 3.2E+02 0.0069 25.1 8.1 70 77-147 217-288 (382)
176 TIGR02090 LEU1_arch isopropylm 28.4 4.6E+02 0.01 23.9 10.4 98 37-142 19-129 (363)
177 PF01381 HTH_3: Helix-turn-hel 28.3 32 0.00069 21.5 1.1 13 234-246 37-49 (55)
178 PRK13352 thiamine biosynthesis 28.3 1.6E+02 0.0035 27.5 5.8 60 74-144 121-186 (431)
179 COG2089 SpsE Sialic acid synth 28.0 3.6E+02 0.0077 24.5 7.8 74 22-105 148-222 (347)
180 PF03102 NeuB: NeuB family; I 28.0 2.1E+02 0.0045 24.7 6.3 84 7-100 97-183 (241)
181 PRK10551 phage resistance prot 28.0 3.1E+02 0.0066 26.5 8.1 115 23-145 349-474 (518)
182 TIGR02607 antidote_HigA addict 27.9 1.2E+02 0.0025 20.5 4.0 62 197-260 8-70 (78)
183 PF13407 Peripla_BP_4: Peripla 27.7 3.6E+02 0.0077 22.4 8.7 68 40-114 14-85 (257)
184 PRK14455 ribosomal RNA large s 27.7 3.3E+02 0.0071 24.9 7.9 77 73-149 245-337 (356)
185 PF01053 Cys_Met_Meta_PP: Cys/ 27.3 2.2E+02 0.0047 26.4 6.7 81 73-153 104-186 (386)
186 cd03323 D-glucarate_dehydratas 27.1 2.4E+02 0.0053 26.1 7.1 70 77-147 250-321 (395)
187 smart00857 Resolvase Resolvase 27.1 1.9E+02 0.004 22.1 5.5 44 44-87 52-95 (148)
188 PRK14463 ribosomal RNA large s 27.0 4E+02 0.0088 24.2 8.3 84 20-106 101-202 (349)
189 COG3737 Uncharacterized conser 27.0 1.5E+02 0.0034 22.6 4.6 50 98-147 56-105 (127)
190 PF00292 PAX: 'Paired box' dom 26.8 10 0.00022 29.2 -1.7 73 195-271 23-98 (125)
191 cd08568 GDPD_TmGDE_like Glycer 26.8 3.4E+02 0.0073 22.6 7.4 66 81-146 110-202 (226)
192 cd05125 Mth938_2P1-like Mth938 26.7 2E+02 0.0044 21.6 5.3 50 98-147 41-90 (114)
193 PRK10508 hypothetical protein; 26.7 1.2E+02 0.0025 27.5 4.8 41 38-84 287-327 (333)
194 COG4152 ABC-type uncharacteriz 26.6 4.5E+02 0.0097 23.2 8.8 71 36-108 101-199 (300)
195 cd00668 Ile_Leu_Val_MetRS_core 26.5 92 0.002 27.7 4.1 48 40-91 82-131 (312)
196 PF00697 PRAI: N-(5'phosphorib 26.4 1.5E+02 0.0033 24.4 5.1 81 49-142 14-96 (197)
197 cd08319 Death_RAIDD Death doma 26.2 60 0.0013 23.0 2.2 69 40-116 10-80 (83)
198 PRK14464 ribosomal RNA large s 26.1 5.1E+02 0.011 23.7 8.9 77 73-149 225-317 (344)
199 COG3882 FkbH Predicted enzyme 26.0 2E+02 0.0044 27.6 6.1 84 56-145 241-331 (574)
200 PLN02444 HMP-P synthase 25.8 6.5E+02 0.014 24.8 12.9 84 36-143 296-379 (642)
201 PRK05395 3-dehydroquinate dehy 25.7 2.5E+02 0.0055 22.2 5.8 79 36-123 25-105 (146)
202 TIGR01660 narH nitrate reducta 25.5 38 0.00081 32.1 1.3 54 87-140 264-317 (492)
203 COG1564 THI80 Thiamine pyropho 25.4 1.5E+02 0.0033 25.0 4.9 43 204-246 74-116 (212)
204 COG4555 NatA ABC-type Na+ tran 25.4 3.6E+02 0.0078 23.0 6.9 70 36-107 104-201 (245)
205 PF01220 DHquinase_II: Dehydro 25.4 3E+02 0.0066 21.6 6.2 79 36-123 24-104 (140)
206 TIGR02534 mucon_cyclo muconate 25.3 2.5E+02 0.0054 25.6 6.8 73 77-150 227-301 (368)
207 PRK00588 rnpA ribonuclease P; 25.2 3E+02 0.0065 20.7 6.5 64 20-86 43-109 (118)
208 PF13443 HTH_26: Cro/C1-type H 25.1 33 0.00071 22.2 0.7 40 197-246 12-51 (63)
209 PRK09613 thiH thiamine biosynt 25.1 6.1E+02 0.013 24.2 13.9 108 37-147 115-241 (469)
210 PRK09284 thiamine biosynthesis 24.9 6.7E+02 0.014 24.6 12.7 85 35-143 290-374 (607)
211 PF07287 DUF1446: Protein of u 24.9 3.7E+02 0.008 24.8 7.6 64 77-144 12-77 (362)
212 cd03768 SR_ResInv Serine Recom 24.8 1.7E+02 0.0038 21.6 4.8 43 43-87 42-84 (126)
213 PRK11359 cyclic-di-GMP phospho 24.7 5.9E+02 0.013 25.5 9.9 69 73-145 677-755 (799)
214 PRK14466 ribosomal RNA large s 24.7 5.4E+02 0.012 23.5 10.0 90 60-149 210-325 (345)
215 KOG3131 Uncharacterized conser 24.7 4.7E+02 0.01 22.8 7.5 109 27-149 31-150 (281)
216 PRK10128 2-keto-3-deoxy-L-rham 24.5 3.5E+02 0.0076 23.6 7.2 85 45-135 160-255 (267)
217 PRK01732 rnpA ribonuclease P; 24.5 3E+02 0.0066 20.5 6.8 63 21-86 46-111 (114)
218 COG2055 Malate/L-lactate dehyd 24.5 5.2E+02 0.011 23.7 8.3 90 36-144 5-114 (349)
219 PRK08247 cystathionine gamma-s 24.4 3.7E+02 0.008 24.4 7.7 63 89-151 116-179 (366)
220 PRK08609 hypothetical protein; 24.3 5.2E+02 0.011 25.4 9.0 82 55-142 429-522 (570)
221 PF00749 tRNA-synt_1c: tRNA sy 24.3 1.8E+02 0.0039 26.0 5.5 62 38-108 48-110 (314)
222 PRK12606 GTP cyclohydrolase I; 24.3 4.3E+02 0.0092 22.1 8.7 20 37-56 17-36 (201)
223 cd00814 MetRS_core catalytic c 24.2 1E+02 0.0022 27.5 3.9 46 40-89 69-114 (319)
224 TIGR01088 aroQ 3-dehydroquinat 24.1 3.4E+02 0.0074 21.3 6.2 78 36-122 23-102 (141)
225 PLN02907 glutamate-tRNA ligase 24.1 2.8E+02 0.006 28.2 7.2 60 38-106 260-319 (722)
226 PF06819 Arc_PepC: Archaeal Pe 23.4 1.8E+02 0.004 21.8 4.4 52 38-90 54-105 (110)
227 PF10171 DUF2366: Uncharacteri 23.2 1.6E+02 0.0034 24.1 4.3 51 38-96 65-115 (173)
228 COG3828 Uncharacterized protei 23.0 88 0.0019 26.1 2.9 32 248-279 64-95 (239)
229 TIGR01329 cysta_beta_ly_E cyst 22.9 3.9E+02 0.0084 24.4 7.6 76 76-151 98-174 (378)
230 PRK12331 oxaloacetate decarbox 22.8 5.4E+02 0.012 24.4 8.5 102 37-143 23-141 (448)
231 cd00405 PRAI Phosphoribosylant 22.7 2.1E+02 0.0045 23.5 5.3 41 57-102 73-113 (203)
232 PRK02399 hypothetical protein; 22.6 2.5E+02 0.0055 26.2 6.1 77 44-142 199-275 (406)
233 PRK10060 RNase II stability mo 22.5 7.1E+02 0.015 24.7 9.8 116 23-145 492-618 (663)
234 PRK14463 ribosomal RNA large s 22.3 6E+02 0.013 23.1 9.0 77 73-149 233-325 (349)
235 PRK06740 histidinol-phosphatas 22.2 5.8E+02 0.013 23.0 8.9 99 44-143 156-289 (331)
236 PRK07027 cobalamin biosynthesi 22.2 1.9E+02 0.0041 22.0 4.5 22 125-146 47-68 (126)
237 cd08607 GDPD_GDE5 Glycerophosp 22.0 4.2E+02 0.0092 23.0 7.4 20 127-146 247-266 (290)
238 COG0502 BioB Biotin synthase a 22.0 6.1E+02 0.013 23.1 8.6 110 38-150 85-204 (335)
239 PLN03233 putative glutamate-tR 22.0 3.2E+02 0.007 26.5 6.9 59 38-105 58-116 (523)
240 PRK11267 biopolymer transport 21.9 3E+02 0.0064 21.3 5.7 56 35-96 79-134 (141)
241 PLN02775 Probable dihydrodipic 21.7 5.5E+02 0.012 22.8 7.8 73 44-121 66-138 (286)
242 PRK11024 colicin uptake protei 21.6 2.8E+02 0.006 21.5 5.4 53 37-95 85-137 (141)
243 PF01680 SOR_SNZ: SOR/SNZ fami 21.6 46 0.00099 27.4 1.0 13 48-60 87-99 (208)
244 PRK09726 antitoxin HipB; Provi 21.5 1.2E+02 0.0026 21.4 3.1 53 196-248 15-67 (88)
245 PF06506 PrpR_N: Propionate ca 21.5 1.2E+02 0.0025 24.5 3.4 68 73-146 63-133 (176)
246 PRK13533 7-cyano-7-deazaguanin 21.4 6.4E+02 0.014 24.2 8.8 51 58-110 185-241 (487)
247 cd01965 Nitrogenase_MoFe_beta_ 21.3 6.7E+02 0.014 23.3 14.3 91 20-113 81-186 (428)
248 PLN02714 thiamin pyrophosphoki 21.3 3.9E+02 0.0085 22.6 6.7 39 208-246 90-134 (229)
249 TIGR03569 NeuB_NnaB N-acetylne 21.2 2.1E+02 0.0046 25.9 5.3 20 127-147 78-97 (329)
250 TIGR00542 hxl6Piso_put hexulos 21.2 3.1E+02 0.0067 23.6 6.3 17 128-144 97-113 (279)
251 cd03314 MAL Methylaspartate am 21.2 6.5E+02 0.014 23.1 10.1 84 61-146 230-320 (369)
252 PRK10188 DNA-binding transcrip 21.2 4.2E+02 0.0091 22.5 7.0 84 38-139 22-115 (240)
253 PRK04156 gltX glutamyl-tRNA sy 21.1 3.5E+02 0.0076 26.6 7.0 59 40-107 152-210 (567)
254 COG1104 NifS Cysteine sulfinat 21.1 3.9E+02 0.0084 24.9 6.9 79 74-152 102-185 (386)
255 COG2089 SpsE Sialic acid synth 21.0 3E+02 0.0065 25.0 6.0 104 20-150 11-114 (347)
256 PF04430 DUF498: Protein of un 20.9 1E+02 0.0022 22.8 2.7 50 98-147 40-89 (110)
257 PF01402 RHH_1: Ribbon-helix-h 20.8 1.8E+02 0.004 16.6 4.2 20 194-213 10-29 (39)
258 PRK14465 ribosomal RNA large s 20.6 6.5E+02 0.014 22.9 9.2 90 60-149 215-329 (342)
259 PF08418 Pol_alpha_B_N: DNA po 20.6 1.1E+02 0.0023 26.4 3.2 50 192-244 9-61 (253)
260 COG4130 Predicted sugar epimer 20.5 5.5E+02 0.012 22.0 8.4 54 98-151 50-109 (272)
261 PRK10826 2-deoxyglucose-6-phos 20.4 3.3E+02 0.0072 22.4 6.1 66 73-139 94-163 (222)
262 cd00818 IleRS_core catalytic c 20.3 1.3E+02 0.0029 27.1 3.9 47 40-90 87-135 (338)
263 PF04412 DUF521: Protein of un 20.3 4.3E+02 0.0092 24.7 7.2 40 44-86 273-315 (400)
264 TIGR00689 rpiB_lacA_lacB sugar 20.3 4.3E+02 0.0094 20.8 7.7 96 37-145 7-105 (144)
265 PRK14457 ribosomal RNA large s 20.2 6.6E+02 0.014 22.8 11.3 101 48-149 197-330 (345)
266 TIGR01422 phosphonatase phosph 20.1 3.7E+02 0.0079 22.7 6.4 66 73-139 101-171 (253)
No 1
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=6.7e-49 Score=338.78 Aligned_cols=218 Identities=22% Similarity=0.301 Sum_probs=192.1
Q ss_pred CcccccccccchHhhhc------CCCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC-CCcHH
Q 023592 2 GLLKISMASSSIEFVER------GHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYL 74 (280)
Q Consensus 2 ~~~~~~~~~~se~~~~~------~~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~-~~~~~ 74 (280)
.++|=.+.+.||+.+|+ .+|+++||+||+|+..+ .++.+.+++++||++||+||+|||++|||.+. ...+.
T Consensus 43 r~IDTA~~YgnE~~VG~aI~~s~v~ReelFittKvw~~~~--~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~ 120 (280)
T COG0656 43 RLIDTAEIYGNEEEVGEAIKESGVPREELFITTKVWPSDL--GYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIE 120 (280)
T ss_pred ceEecHhHhcCHHHHHHHHHhcCCCHHHeEEEeecCCccC--CcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHH
Confidence 35677788889999996 28999999999998544 67899999999999999999999999999763 22157
Q ss_pred HHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccccccccc
Q 023592 75 DALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLS 153 (280)
Q Consensus 75 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~ 153 (280)
++|++|++++++|+||+||||||+...++++++. ++.|+++|++||++.+.. +++++|+++||.++|||||++|..
T Consensus 121 etw~alE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~- 197 (280)
T COG0656 121 ETWKALEELVDEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGK- 197 (280)
T ss_pred HHHHHHHHHHhcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccc-
Confidence 9999999999999999999999999999999997 678999999999987765 499999999999999999996531
Q ss_pred ccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCC
Q 023592 154 EKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLG 233 (280)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~ 233 (280)
..+ .+.+.++|++||.|++|++|+|+++++ .++||.++
T Consensus 198 --l~~------------------------------------~~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~-- 235 (280)
T COG0656 198 --LLD------------------------------------NPVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKST-- 235 (280)
T ss_pred --ccc------------------------------------ChHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCC--
Confidence 111 178999999999999999999999999 45688888
Q ss_pred CHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCCC
Q 023592 234 LAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKD 266 (280)
Q Consensus 234 ~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~~~ 266 (280)
+++|+.+|++++++.||+|||+.|+.+.....+
T Consensus 236 ~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~~~ 268 (280)
T COG0656 236 TPERIRENLAAFDFELSEEDMAAIDALDRGYGR 268 (280)
T ss_pred CHHHHHHHHhhhcCCCCHHHHHHHHhhccccCc
Confidence 999999999999999999999999999876644
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.9e-48 Score=345.41 Aligned_cols=247 Identities=22% Similarity=0.407 Sum_probs=210.5
Q ss_pred Cccccccccc---chHhhhc---C--CCCCeEEEeeccCCC--------CCCCHHHHHHHHHHHHhhcCCCcccEEEEec
Q 023592 2 GLLKISMASS---SIEFVER---G--HQSSWISLTKWVPPP--------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHW 65 (280)
Q Consensus 2 ~~~~~~~~~~---se~~~~~---~--~R~~~~I~tK~~~~~--------~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~ 65 (280)
|++|-...+. ||+++|+ . .|++++|+||++... .+++++.|+++++.||+||||||||+||+||
T Consensus 48 n~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~ 127 (316)
T COG0667 48 NFFDTADVYGDGRSEEILGEALKERGRRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHR 127 (316)
T ss_pred CEEECccccCCCchHHHHHHHHhccCCCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCC
Confidence 4555555554 9999996 2 389999999998542 4569999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEec
Q 023592 66 WDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 66 ~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 145 (280)
||+..+ ..+++++|.+|+++||||+||+||++.+++.++.....+++++|.+||+++|..+.+++++|+++||++++|+
T Consensus 128 ~d~~~p-~~e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~s 206 (316)
T COG0667 128 PDPETP-IEETLEALDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYS 206 (316)
T ss_pred CCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEec
Confidence 999888 7899999999999999999999999999999999853579999999999998878789999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccC--CchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Q 023592 146 TVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWG--GWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAV 223 (280)
Q Consensus 146 pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v 223 (280)
||++|+|++++... +. ..+... ..++. ..+....+...+.++|+++|+||+|+||+|++++|.+
T Consensus 207 pla~G~Ltgk~~~~--~~---~~r~~~---------~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v 272 (316)
T COG0667 207 PLASGLLTGKYLPG--PE---GSRASE---------LPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGV 272 (316)
T ss_pred CccccccCCCcCCC--cc---hhhccc---------cccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCC
Confidence 99999999998873 11 111100 01111 1233456678899999999999999999999999999
Q ss_pred ceeeecccCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCC
Q 023592 224 AGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGK 265 (280)
Q Consensus 224 ~~~i~G~~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~~ 265 (280)
+++|+|++ +++||++|+++++..|++++++.|++......
T Consensus 273 ~~~I~Ga~--~~~qL~en~~A~~~~L~~~~~~~l~~~~~~~~ 312 (316)
T COG0667 273 TSPIVGAS--KAEQLEENLAALDIKLSEEELAALDEISAEEP 312 (316)
T ss_pred ceEeecCC--CHHHHHHHHHHhcCCCCHHHHHHHHHHhhhcc
Confidence 99999999 99999999999999999999999998875443
No 3
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=7.2e-48 Score=338.35 Aligned_cols=256 Identities=23% Similarity=0.377 Sum_probs=216.6
Q ss_pred Cccccccc---ccchHhhhc------CCCCCeEEEeeccCC-----CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCC
Q 023592 2 GLLKISMA---SSSIEFVER------GHQSSWISLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWD 67 (280)
Q Consensus 2 ~~~~~~~~---~~se~~~~~------~~R~~~~I~tK~~~~-----~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~ 67 (280)
++||-++. +.||.++|+ .+|++++|+||++-. +.+.+...+++.++.|+++||++|||+||+||+|
T Consensus 59 n~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D 138 (336)
T KOG1575|consen 59 NFFDTAEVYGNGQSEELLGEFIKSRGWRRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWD 138 (336)
T ss_pred CEEehhhhcCCcccHHHHHHHHHhcCCcCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccC
Confidence 34444443 468888886 479999999999843 3677889999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccCh-hhhHHHHHHHhCCeEEEec
Q 023592 68 YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 68 ~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~s 145 (280)
+..+ +++++++|.+++++|||||||+|+++.+++.++... ..+|+++|++||++.|.. +.+++++|++.||++++||
T Consensus 139 ~~~p-iee~m~aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ys 217 (336)
T KOG1575|consen 139 PMVP-IEETMRALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWS 217 (336)
T ss_pred CCCC-HHHHHHHHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEec
Confidence 9999 899999999999999999999999999999999986 456999999999999995 5569999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCce
Q 023592 146 TVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAG 225 (280)
Q Consensus 146 pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~ 225 (280)
||++|+|++++.... ..+....++... ...+++......+.+++++.++|+++|+|++|+||+|+++++.+++
T Consensus 218 PL~~G~Ltgk~~~~e-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~ 290 (336)
T KOG1575|consen 218 PLGRGLLTGKYKLGE-DSRNGDKRFQFL------GLSPQTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSS 290 (336)
T ss_pred ccccceeccCccccc-cccccccccccc------ccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEE
Confidence 999999999988741 122222222111 1112222224567778999999999999999999999999999999
Q ss_pred eeecccCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCCCC
Q 023592 226 SMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKDL 267 (280)
Q Consensus 226 ~i~G~~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~~~~ 267 (280)
+|+|++ +++||++|++|+...||++++.+|++..+.....
T Consensus 291 pIpG~s--~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~ 330 (336)
T KOG1575|consen 291 PIPGAS--KIEQLKENIGALSVKLTPEEIKELEEIIDKILGF 330 (336)
T ss_pred ecCCCC--cHHHHHHHHhhhhccCCHHHHHHHHHhhccccCc
Confidence 999999 9999999999999999999999999998766544
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.3e-45 Score=330.84 Aligned_cols=250 Identities=18% Similarity=0.265 Sum_probs=201.5
Q ss_pred CCcccccccc---cchHhhhc-----C-CCCCeEEEeeccCC-----CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecC
Q 023592 1 MGLLKISMAS---SSIEFVER-----G-HQSSWISLTKWVPP-----PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWW 66 (280)
Q Consensus 1 ~~~~~~~~~~---~se~~~~~-----~-~R~~~~I~tK~~~~-----~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~ 66 (280)
++++|-...+ .||+++|+ + +|++++|+||++.. ..+++++.++++|++||++|||||||+|++|||
T Consensus 43 i~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~ 122 (317)
T TIGR01293 43 INLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRP 122 (317)
T ss_pred CCeEECccccCCCccHHHHHHHHHhcCCCcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccC
Confidence 3556666665 48999986 2 59999999998531 134689999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----C-CCeeEeeeeccccccCh-hhhHHHHHHHhCCe
Q 023592 67 DYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----G-IPVVSNQVQHSVVDMRP-QQKMAELCQLTGVK 140 (280)
Q Consensus 67 ~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~ 140 (280)
++..+ .++++++|++|+++||||+||+|||+.+++.++... + .+++++|++||++++.. +.+++++|+++||+
T Consensus 123 ~~~~~-~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~ 201 (317)
T TIGR01293 123 DPNTP-MEETVRAMTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVG 201 (317)
T ss_pred CCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCe
Confidence 88777 789999999999999999999999999998876543 2 57889999999998874 66899999999999
Q ss_pred EEEecccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCc--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 023592 141 LITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGW--SQFQVLLQTLKRIASKHGVSIPVVAVRYIL 218 (280)
Q Consensus 141 via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~la~~~~~s~~q~al~~~l 218 (280)
+++|+||++|+|++++... .+. .++.......++. ..+..+ ....+.++.+.++|+++|+|++|+||+|++
T Consensus 202 v~a~spl~~G~Ltg~~~~~---~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l 274 (317)
T TIGR01293 202 AMTWSPLACGLVSGKYDSG---IPP-YSRATLKGYQWLK---DKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCL 274 (317)
T ss_pred EEEeccccccccCCCCCCC---CCC-cccccccccchhh---hhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHh
Confidence 9999999999999987653 111 1111000000111 000000 123455678999999999999999999999
Q ss_pred hCCCCceeeecccCCCHhHHHHhHhhhcC--CCCHHHHHHHHHH
Q 023592 219 DQPAVAGSMIGVRLGLAEHIQDTNAIFML--SLDEDDVNSIQEV 260 (280)
Q Consensus 219 ~~~~v~~~i~G~~~~~~~~l~~nl~a~~~--~Lt~e~~~~l~~~ 260 (280)
++|+|+++|+|++ +++||++|+++++. +||+++++.|+++
T Consensus 275 ~~~~v~~~i~G~~--~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 275 RNEGVSSVLLGAS--SAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred cCCCCeEEEeCCC--CHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 9999999999999 99999999999987 9999999999875
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=3.6e-45 Score=331.49 Aligned_cols=259 Identities=20% Similarity=0.263 Sum_probs=204.4
Q ss_pred Ccccccccc-----cchHhhhcC-------CCCCeEEEeeccCC------CCCCCHHHHHHHHHHHHhhcCCCcccEEEE
Q 023592 2 GLLKISMAS-----SSIEFVERG-------HQSSWISLTKWVPP------PVKMTSSIVRESIDVSRRRMDVPCLDMLQF 63 (280)
Q Consensus 2 ~~~~~~~~~-----~se~~~~~~-------~R~~~~I~tK~~~~------~~~~~~~~i~~~i~~SL~~L~~d~iDl~~l 63 (280)
+++|-...+ .||+++|+. .|++++|+||+|.. ....+++.+++++++||++|||||||+|++
T Consensus 58 n~~DTA~~YG~~~g~sE~~lG~~l~~~~~~~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~l 137 (346)
T PRK09912 58 THFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYS 137 (346)
T ss_pred CEEEChhhhCCCCCCcHHHHHHHHHhcccCCCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 455555555 489988862 59999999998631 123578999999999999999999999999
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CCCeeEeeeeccccccChh-hhHHHHHHHhC
Q 023592 64 HWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQ-QKMAELCQLTG 138 (280)
Q Consensus 64 H~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g 138 (280)
|+|+...+ .++++++|++|+++||||+||||||++++++++... +.+++++|++||++++..+ .+++++|+++|
T Consensus 138 H~~~~~~~-~~e~~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~g 216 (346)
T PRK09912 138 HRVDENTP-MEETASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNG 216 (346)
T ss_pred CCCCCCCC-HHHHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcC
Confidence 99988777 789999999999999999999999999988876543 4578999999999998654 46999999999
Q ss_pred CeEEEecccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 023592 139 VKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYIL 218 (280)
Q Consensus 139 i~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l 218 (280)
|+|++|+||++|+|++++... .|. .++.... ...+....+++.. +...++.+.+.++|+++|+|++|+||+|++
T Consensus 217 I~via~spl~~G~Lt~~~~~~---~~~-~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l 290 (346)
T PRK09912 217 VGCIAFTPLAQGLLTGKYLNG---IPQ-DSRMHRE-GNKVRGLTPKMLT-EANLNSLRLLNEMAQQRGQSMAQMALSWLL 290 (346)
T ss_pred ceEEEehhhcCccccCCCCCC---CCC-Ccccccc-ccchhhhchhhcc-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999987543 111 1111000 0000000011111 123345688999999999999999999999
Q ss_pred hCCCCceeeecccCCCHhHHHHhHhhhc-CCCCHHHHHHHHHHHhcCCCCccc
Q 023592 219 DQPAVAGSMIGVRLGLAEHIQDTNAIFM-LSLDEDDVNSIQEVTKKGKDLLGV 270 (280)
Q Consensus 219 ~~~~v~~~i~G~~~~~~~~l~~nl~a~~-~~Lt~e~~~~l~~~~~~~~~~~~~ 270 (280)
++|.|+++|+|++ +++||++|+++++ ++||+++++.|++++++ .-.+.|
T Consensus 291 ~~~~v~~~i~G~~--~~~ql~en~~a~~~~~L~~e~~~~l~~~~~~-~~~~~~ 340 (346)
T PRK09912 291 KDERVTSVLIGAS--RAEQLEENVQALNNLTFSTEELAQIDQHIAD-GELNLW 340 (346)
T ss_pred hCCCCeEEEeCCC--CHHHHHHHHhhhcCCCCCHHHHHHHHHhhCc-cceeEe
Confidence 9999999999999 9999999999984 79999999999999855 334445
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=2.1e-44 Score=326.76 Aligned_cols=239 Identities=23% Similarity=0.389 Sum_probs=195.7
Q ss_pred cchHhhhc-----CCCCCeEEEeeccCCC----------CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC------
Q 023592 11 SSIEFVER-----GHQSSWISLTKWVPPP----------VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS------ 69 (280)
Q Consensus 11 ~se~~~~~-----~~R~~~~I~tK~~~~~----------~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~------ 69 (280)
.||+++|+ ++|++++|+||++... .+++++.++++|++||++|||||||+|++|||+..
T Consensus 64 ~sE~~iG~aL~~~~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~ 143 (346)
T PRK10625 64 LTETYIGNWLAKRGSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGK 143 (346)
T ss_pred chHHHHHHHHhhcCCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccc
Confidence 48999886 3599999999985311 14689999999999999999999999999998642
Q ss_pred -----------CCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CC-CeeEeeeeccccccChhhhHHHH
Q 023592 70 -----------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GI-PVVSNQVQHSVVDMRPQQKMAEL 133 (280)
Q Consensus 70 -----------~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~~-~~~~~q~~~n~~~~~~~~~~~~~ 133 (280)
.+ +.++|++|++|+++||||+||+|||+...+.++... +. .++++|++||++++..+.+++++
T Consensus 144 ~~~~~~~~~~~~~-~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~ 222 (346)
T PRK10625 144 LGYSWTDSAPAVS-LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEV 222 (346)
T ss_pred cccccccccCCCC-HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHH
Confidence 23 689999999999999999999999999988876542 22 48899999999998877789999
Q ss_pred HHHhCCeEEEecccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHH
Q 023592 134 CQLTGVKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVA 213 (280)
Q Consensus 134 ~~~~gi~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~a 213 (280)
|+++||++++|+||++|+|++++..... | ...+... ...| .++ ..+...++.+.+.++|+++|+|++|+|
T Consensus 223 ~~~~gi~via~spL~~G~Ltg~~~~~~~--~-~~~~~~~--~~~~----~~~-~~~~~~~~~~~l~~la~~~g~t~aqva 292 (346)
T PRK10625 223 SQYEGVELLAYSCLAFGTLTGKYLNGAK--P-AGARNTL--FSRF----TRY-SGEQTQKAVAAYVDIAKRHGLDPAQMA 292 (346)
T ss_pred HHHcCCeEEEeccccCeeccCCCCCCCC--C-CCccccc--cccc----ccc-cchhHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999998755311 1 1111000 0001 111 112334556889999999999999999
Q ss_pred HHHHHhCCCCceeeecccCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHh
Q 023592 214 VRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTK 262 (280)
Q Consensus 214 l~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~ 262 (280)
|+|++++|.|+++|+|++ +++||++|+++++++||+++++.|+++.+
T Consensus 293 l~w~l~~~~v~~~I~G~~--~~~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 293 LAFVRRQPFVASTLLGAT--TMEQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHHhCCCCeeEEeCCC--CHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 999999999999999999 99999999999999999999999999874
No 7
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.1e-44 Score=319.96 Aligned_cols=239 Identities=27% Similarity=0.466 Sum_probs=197.6
Q ss_pred CCcccccccc---cchHhhhc------CCCCCeEEEeecc---CCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCC
Q 023592 1 MGLLKISMAS---SSIEFVER------GHQSSWISLTKWV---PPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY 68 (280)
Q Consensus 1 ~~~~~~~~~~---~se~~~~~------~~R~~~~I~tK~~---~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~ 68 (280)
++.+|-+..+ .||.++|+ .+|++++|+||+. .....++++.+++++++||++||+||||+|++|+|+.
T Consensus 31 in~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~ 110 (283)
T PF00248_consen 31 INFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDP 110 (283)
T ss_dssp --EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSST
T ss_pred CCeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhccccccccc
Confidence 4567777665 99999987 3899999999992 2234678999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccc
Q 023592 69 SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 69 ~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 147 (280)
......++|++|++|+++|+||+||||||+++.++.+... ..+|+++|++||++++....+++++|+++||++++|+|+
T Consensus 111 ~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l 190 (283)
T PF00248_consen 111 SEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPL 190 (283)
T ss_dssp TSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTT
T ss_pred cccccchhhhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8775789999999999999999999999999999999554 578999999999997777889999999999999999999
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceee
Q 023592 148 MGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSM 227 (280)
Q Consensus 148 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i 227 (280)
++|+|++++.....+.+..... ......+.+.++++++|.|++|+||+|+++++.+.+++
T Consensus 191 ~~G~l~~~~~~~~~~~~~~~~~--------------------~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i 250 (283)
T PF00248_consen 191 AGGLLTGKYKSPPPPPSRASLR--------------------DAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVI 250 (283)
T ss_dssp GGGCGGTTTTTTTTSTTTSGSS--------------------THGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEE
T ss_pred ccCccccccccCCCcccccccc--------------------hhhhhhhhhhhhhhhcccccchhhhhhhhhcccccccc
Confidence 9999999877642211111000 02223589999999999999999999999999999999
Q ss_pred ecccCCCHhHHHHhHhhhcCCCCHHHHHHHHHHH
Q 023592 228 IGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 261 (280)
Q Consensus 228 ~G~~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~ 261 (280)
+|++ +++|+++|+++++.+||++++++|+++.
T Consensus 251 ~g~~--~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 251 VGAS--SPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp EB-S--SHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred CCCC--CHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 9999 9999999999999999999999999874
No 8
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=6.1e-44 Score=312.65 Aligned_cols=215 Identities=17% Similarity=0.263 Sum_probs=188.8
Q ss_pred CCcccccccccchHhhhc-----C-CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC--CCc
Q 023592 1 MGLLKISMASSSIEFVER-----G-HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS--NPG 72 (280)
Q Consensus 1 ~~~~~~~~~~~se~~~~~-----~-~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~--~~~ 72 (280)
++.+|-...+.||.++|+ + +|+++||+||+++. ..+++.+++++++||++||+||||+|++|+|++. .+
T Consensus 30 i~~~DTA~~Yg~E~~lG~al~~~~~~R~~v~i~TK~~~~--~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~- 106 (267)
T PRK11172 30 YRAIDTAQIYDNEAAVGQAIAESGVPRDELFITTKIWID--NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVS- 106 (267)
T ss_pred CCEEEccchhCCHHHHHHHHHHcCCChhHeEEEEEeCCC--CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCC-
Confidence 456777888888999987 2 69999999999753 4578999999999999999999999999999764 34
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-C-CCeeEeeeeccccccChhhhHHHHHHHhCCeEEEecccccc
Q 023592 73 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-G-IPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 150 (280)
..++|++|++|+++||||+||||||+.+.+.++++. + .+++++|++||++++. .+++++|+++||+|++|+||++|
T Consensus 107 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G 184 (267)
T PRK11172 107 VEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYG 184 (267)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCC
Confidence 688999999999999999999999999999998875 3 3689999999998764 58999999999999999999998
Q ss_pred cccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecc
Q 023592 151 LLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGV 230 (280)
Q Consensus 151 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~ 230 (280)
.+.. . +.+.++|+++|.|++|+||+|+++++. ++|+|+
T Consensus 185 ~~~~----~------------------------------------~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~ 222 (267)
T PRK11172 185 KVLK----D------------------------------------PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSS 222 (267)
T ss_pred cccC----C------------------------------------HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCC
Confidence 5421 0 568899999999999999999999973 479999
Q ss_pred cCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcC
Q 023592 231 RLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKG 264 (280)
Q Consensus 231 ~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~ 264 (280)
+ +++|+++|+++++++||++++++|+++.+..
T Consensus 223 ~--~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~~ 254 (267)
T PRK11172 223 T--KRENLASNLLAQDLQLDAEDMAAIAALDRNG 254 (267)
T ss_pred C--CHHHHHHHHhhcCCCcCHHHHHHHhhhccCC
Confidence 9 9999999999999999999999999987543
No 9
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.6e-42 Score=308.29 Aligned_cols=237 Identities=17% Similarity=0.263 Sum_probs=193.3
Q ss_pred Ccccccccc---cchHhhhcC------CCCCeEEEeeccCC--CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCC
Q 023592 2 GLLKISMAS---SSIEFVERG------HQSSWISLTKWVPP--PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN 70 (280)
Q Consensus 2 ~~~~~~~~~---~se~~~~~~------~R~~~~I~tK~~~~--~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~ 70 (280)
+.+|-...+ .||.++|+. +|++++|+||++.. ..+++++.+++++++||++|||||||+|++|+|+...
T Consensus 46 n~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~ 125 (314)
T PLN02587 46 NFFDTSPYYGGTLSEKVLGKALKALGIPREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGS 125 (314)
T ss_pred CEEECcCccCCCchHHHHHHHHHhCCCCcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcc
Confidence 455555543 479998862 69999999999742 2356899999999999999999999999999997432
Q ss_pred C--cHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEe
Q 023592 71 P--GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 144 (280)
Q Consensus 71 ~--~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 144 (280)
. ...++|++|++|+++||||+||+|||+.+++..+... ...+..+|+.||+.++.. .+++++|+++||++++|
T Consensus 126 ~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~ 204 (314)
T PLN02587 126 LDQIVNETIPALQKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISA 204 (314)
T ss_pred hhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEe
Confidence 1 2568999999999999999999999999888777653 234555789999876544 48999999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCc
Q 023592 145 GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVA 224 (280)
Q Consensus 145 spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~ 224 (280)
+||++|+|+++...... + ..+.+..+.+.+.++|+++++|++|+||+|++++|.|+
T Consensus 205 spl~~G~L~~~~~~~~~--~----------------------~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~ 260 (314)
T PLN02587 205 SPLAMGLLTENGPPEWH--P----------------------APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDIS 260 (314)
T ss_pred chhhccccCCCCCCCCC--C----------------------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCe
Confidence 99999999886321100 0 01224455678899999999999999999999999999
Q ss_pred eeeecccCCCHhHHHHhHhhhcC----CCCHHHHHHHHHHHhcCC
Q 023592 225 GSMIGVRLGLAEHIQDTNAIFML----SLDEDDVNSIQEVTKKGK 265 (280)
Q Consensus 225 ~~i~G~~~~~~~~l~~nl~a~~~----~Lt~e~~~~l~~~~~~~~ 265 (280)
++|+|++ +++||++|+++++. +|+++++++|+++.+...
T Consensus 261 ~~i~G~~--~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~~~ 303 (314)
T PLN02587 261 TTLVGMN--SVQQVEENVAAATELETSGIDEELLSEVEAILAPVK 303 (314)
T ss_pred eEEecCC--CHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcccc
Confidence 9999999 99999999999763 799999999999886444
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=4.1e-42 Score=303.74 Aligned_cols=229 Identities=28% Similarity=0.529 Sum_probs=199.3
Q ss_pred Cccccccccc---chHhhhcC-----CCCCeEEEeeccCCC---CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCC
Q 023592 2 GLLKISMASS---SIEFVERG-----HQSSWISLTKWVPPP---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN 70 (280)
Q Consensus 2 ~~~~~~~~~~---se~~~~~~-----~R~~~~I~tK~~~~~---~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~ 70 (280)
+.+|-+..+. ||+++|+. .|++++|+||+++.. .+++++.+++++++||++||+||||+|+||+|+...
T Consensus 44 ~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~ 123 (285)
T cd06660 44 NFIDTADVYGDGESEELLGEALKERGPREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDT 123 (285)
T ss_pred CeEECccccCCCCCHHHHHHHHhccCCcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCC
Confidence 4566666665 89999872 399999999998643 346899999999999999999999999999998766
Q ss_pred CcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccccc
Q 023592 71 PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMG 149 (280)
Q Consensus 71 ~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~ 149 (280)
....++|++|++++++|+||+||||+|+.+.+.+++.. ..+|+++|++||++++..+.+++++|+++||++++|+||++
T Consensus 124 ~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~ 203 (285)
T cd06660 124 PDIEETLRALEELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAG 203 (285)
T ss_pred CCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccC
Confidence 55789999999999999999999999999999999885 37899999999999988766899999999999999999999
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeec
Q 023592 150 GLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIG 229 (280)
Q Consensus 150 G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G 229 (280)
|.|+++..... +.+. ......+..++++++.+++|+||+|++++|.++++++|
T Consensus 204 g~l~~~~~~~~---~~~~------------------------~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g 256 (285)
T cd06660 204 GLLTGKYLPGA---PPPE------------------------GDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPG 256 (285)
T ss_pred ceecCCCCCCC---CCCh------------------------hhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeC
Confidence 99987654421 1000 01247899999999999999999999999999999999
Q ss_pred ccCCCHhHHHHhHhhhcCCCCHHHHHHHHH
Q 023592 230 VRLGLAEHIQDTNAIFMLSLDEDDVNSIQE 259 (280)
Q Consensus 230 ~~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~ 259 (280)
++ +++||++|+++...+||+++++.|++
T Consensus 257 ~~--~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 257 AS--SPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred CC--CHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 99 99999999999988999999999975
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=4e-42 Score=296.91 Aligned_cols=216 Identities=18% Similarity=0.306 Sum_probs=182.3
Q ss_pred cccccccchHhhhc----------CCCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC-----
Q 023592 5 KISMASSSIEFVER----------GHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS----- 69 (280)
Q Consensus 5 ~~~~~~~se~~~~~----------~~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~----- 69 (280)
|-...+.+|+-+|. -+|+++||+||+|+.. +.++.++.++++||++||+||+|+|++|||-..
T Consensus 46 DtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~~--~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~ 123 (300)
T KOG1577|consen 46 DTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPTD--HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFP 123 (300)
T ss_pred echhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCccc--cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCC
Confidence 33444566776665 1899999999999854 478999999999999999999999999999543
Q ss_pred ----------CCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccChhhhHHHHHHHhC
Q 023592 70 ----------NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTG 138 (280)
Q Consensus 70 ----------~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g 138 (280)
..+..++|++||++++.|++|+||||||+..++++++.. .++|.++|+++|+. ..+.+++++|+++|
T Consensus 124 ~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~--~~Q~~L~~fCk~~~ 201 (300)
T KOG1577|consen 124 KDENGKVNYDDVDRIETWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPY--LQQKKLVEFCKSKG 201 (300)
T ss_pred cccccccccccchHHHHHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCC--cChHHHHHHHhhCC
Confidence 113678999999999999999999999999999999997 78899999999995 34467999999999
Q ss_pred CeEEEecccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 023592 139 VKLITYGTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYIL 218 (280)
Q Consensus 139 i~via~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l 218 (280)
|.|.|||||+.+-- +. +.+.+ +.+.++|++|+.||+|++|||++
T Consensus 202 I~v~AYSpLg~~~~-~~---------------------------------~ll~~--~~l~~iA~K~~kt~aQIlLrw~~ 245 (300)
T KOG1577|consen 202 IVVTAYSPLGSPGR-GS---------------------------------DLLED--PVLKEIAKKYNKTPAQILLRWAL 245 (300)
T ss_pred cEEEEecCCCCCCC-cc---------------------------------ccccC--HHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999987621 00 12222 89999999999999999999999
Q ss_pred hCCCCceeeecccCCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcC
Q 023592 219 DQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKG 264 (280)
Q Consensus 219 ~~~~v~~~i~G~~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~ 264 (280)
+++.+ +||-++ +++||.+|++++++.||+||++.|+......
T Consensus 246 q~g~~--vipKS~--~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~ 287 (300)
T KOG1577|consen 246 QRGVS--VIPKSS--NPERIKENFKVFDFELTEEDMKKLDSLNSNE 287 (300)
T ss_pred hCCcE--EEeccC--CHHHHHHHHhhccccCCHHHHHHHhhccccc
Confidence 98754 466566 9999999999999999999999999765443
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=7.3e-41 Score=296.54 Aligned_cols=209 Identities=15% Similarity=0.233 Sum_probs=178.9
Q ss_pred cchHhhhc---CCCCCeEEEeeccCC-------CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCC----CCCcHHHH
Q 023592 11 SSIEFVER---GHQSSWISLTKWVPP-------PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY----SNPGYLDA 76 (280)
Q Consensus 11 ~se~~~~~---~~R~~~~I~tK~~~~-------~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~----~~~~~~~~ 76 (280)
.||+++|+ +.|++++|+||++.. ..+.+++.+++++++||++|||||||+|++|+++. ......++
T Consensus 67 ~sE~~lg~~l~~~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~ 146 (290)
T PRK10376 67 VTNQLIREALHPYPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEP 146 (290)
T ss_pred cHHHHHHHHHhcCCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHH
Confidence 36888876 369999999998631 23568999999999999999999999999998521 11226789
Q ss_pred HHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEecccccccccccc
Q 023592 77 LNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKF 156 (280)
Q Consensus 77 ~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~~~~ 156 (280)
|++|++|+++||||+||||||+.+.+.++.+. .+++++|++||++++.. .+++++|+++||++++|+||+++.
T Consensus 147 ~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~-~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~----- 219 (290)
T PRK10376 147 LTVLAELQRQGLVRHIGLSNVTPTQVAEARKI-AEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFT----- 219 (290)
T ss_pred HHHHHHHHHCCceeEEEecCCCHHHHHHHHhh-CCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCC-----
Confidence 99999999999999999999999999998874 56899999999998764 579999999999999999997431
Q ss_pred cCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCCCHh
Q 023592 157 LDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAE 236 (280)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~ 236 (280)
+ .. .+.+.++|+++|+|++|+||+|+++++.++++|+|++ +++
T Consensus 220 -------~--------------------------~~--~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~--~~~ 262 (290)
T PRK10376 220 -------P--------------------------LQ--SSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTS--SVA 262 (290)
T ss_pred -------h--------------------------hh--hHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCC--CHH
Confidence 0 00 1678999999999999999999999876678899999 999
Q ss_pred HHHHhHhhhcCCCCHHHHHHHHHHHhc
Q 023592 237 HIQDTNAIFMLSLDEDDVNSIQEVTKK 263 (280)
Q Consensus 237 ~l~~nl~a~~~~Lt~e~~~~l~~~~~~ 263 (280)
|+++|+++++++||+++++.|+++.++
T Consensus 263 ~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 263 HLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred HHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999988643
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=4.3e-41 Score=295.73 Aligned_cols=215 Identities=18% Similarity=0.310 Sum_probs=185.3
Q ss_pred CCcccccccccchHhhhc-----C-CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHH
Q 023592 1 MGLLKISMASSSIEFVER-----G-HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYL 74 (280)
Q Consensus 1 ~~~~~~~~~~~se~~~~~-----~-~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~ 74 (280)
++.+|-...+.+|+++|+ + +|++++|+||+++. +++.+++++++||++||+||||+|++|+|++..+.+.
T Consensus 42 i~~~DTA~~Yg~E~~lG~al~~~~~~R~~~~i~tK~~~~----~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~ 117 (275)
T PRK11565 42 YRSIDTAAIYKNEEGVGKALKEASVAREELFITTKLWND----DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYV 117 (275)
T ss_pred CCEEEchhhhCCHHHHHHHHHHcCCCHHHEEEEEEecCc----chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHH
Confidence 355676667778998886 2 58999999999742 5689999999999999999999999999987654478
Q ss_pred HHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccccccccc
Q 023592 75 DALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLS 153 (280)
Q Consensus 75 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~ 153 (280)
++|++|++|+++|+||+||||||+.+++.++... +++++++|++||++.+. .+++++|+++||++++|+|+++|.-
T Consensus 118 ~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~- 194 (275)
T PRK11565 118 EAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK- 194 (275)
T ss_pred HHHHHHHHHHHcCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-
Confidence 9999999999999999999999999999998864 56789999999998754 5799999999999999999987620
Q ss_pred ccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCC
Q 023592 154 EKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLG 233 (280)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~ 233 (280)
+.+ . .+.+.++|+++|+|++|+||||+++++. ++|+|++
T Consensus 195 ~~~-~------------------------------------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~-- 233 (275)
T PRK11565 195 GVF-D------------------------------------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSV-- 233 (275)
T ss_pred ccc-c------------------------------------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCC--
Confidence 000 0 1678999999999999999999999974 3799999
Q ss_pred CHhHHHHhHhhhcCCCCHHHHHHHHHHHhc
Q 023592 234 LAEHIQDTNAIFMLSLDEDDVNSIQEVTKK 263 (280)
Q Consensus 234 ~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~ 263 (280)
+++|+++|+++++++||++++++|+.+...
T Consensus 234 ~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 234 TPSRIAENFDVFDFRLDKDELGEIAKLDQG 263 (275)
T ss_pred CHHHHHHHHhccCCCcCHHHHHHHHhhccc
Confidence 999999999999999999999999998643
No 14
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=8.7e-40 Score=289.45 Aligned_cols=227 Identities=16% Similarity=0.117 Sum_probs=183.1
Q ss_pred CCccccccccc-chHhhhcC----CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC-CCcHH
Q 023592 1 MGLLKISMASS-SIEFVERG----HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS-NPGYL 74 (280)
Q Consensus 1 ~~~~~~~~~~~-se~~~~~~----~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~-~~~~~ 74 (280)
++++|-...+. ||+++|+. .+++++|+||.. +.+++.+++++++||++|||||||+|++|+|+.. .+...
T Consensus 46 in~~DTA~~YG~SE~~lG~al~~~~~~~~~i~tk~~----~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~ 121 (292)
T PRK14863 46 LSVLDASGLFGRAETVLGQLIPRPVPFRVTLSTVRA----DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGA 121 (292)
T ss_pred CCEEecchhhhhHHHHHhhhhccCCceEeecccccc----cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchH
Confidence 34555555544 79999873 235788899853 2368999999999999999999999999998753 23236
Q ss_pred HHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccChh-hhHHHHHHHhCCeEEEeccccccccc
Q 023592 75 DALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGGLLS 153 (280)
Q Consensus 75 ~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~~G~L~ 153 (280)
+++++|++|+++||||+||||||++.++..+.. ..+|+++|++||++++..+ .+++++|+++||++++|+||++|+|+
T Consensus 122 ~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~-~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~ 200 (292)
T PRK14863 122 ALWERLQALKDQGLFAKIGVSAHASDDPVGVAR-RFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLF 200 (292)
T ss_pred HHHHHHHHHHHcCCcceEeeeccCHHHHHHHHh-cCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcccc
Confidence 789999999999999999999999988887765 5689999999999998754 46999999999999999999999996
Q ss_pred ccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCC
Q 023592 154 EKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLG 233 (280)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~ 233 (280)
+.... .+ . .+. + ....+..+.+++.++++|++|+||+|++++|.|+++|+|++
T Consensus 201 ~~~~~----~~--~---------~~~---------~-~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~-- 253 (292)
T PRK14863 201 LPPDR----VP--A---------QLK---------G-ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVN-- 253 (292)
T ss_pred CCccc----Cc--c---------chh---------h-hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecC--
Confidence 42110 00 0 000 0 11224667778888899999999999999999999999999
Q ss_pred CHhHHHHhHhhhcCCCCHHHHHHHHH
Q 023592 234 LAEHIQDTNAIFMLSLDEDDVNSIQE 259 (280)
Q Consensus 234 ~~~~l~~nl~a~~~~Lt~e~~~~l~~ 259 (280)
+++|+++|+++.+.+++++.+++|.-
T Consensus 254 ~~~ql~~n~~a~~~~~~~~~~~~l~~ 279 (292)
T PRK14863 254 SAAELSAVVAAASSPPPDLDWDDMAI 279 (292)
T ss_pred CHHHHHHHHHHHhcCCCccchhhccC
Confidence 99999999999998999988777653
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.8e-38 Score=262.66 Aligned_cols=218 Identities=22% Similarity=0.312 Sum_probs=191.0
Q ss_pred cccchHhhhc------CCCCCeEEEeeccC----------CCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCc
Q 023592 9 ASSSIEFVER------GHQSSWISLTKWVP----------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPG 72 (280)
Q Consensus 9 ~~~se~~~~~------~~R~~~~I~tK~~~----------~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~ 72 (280)
-+..|++.|. +-|+++.|.||||- ...+++.++|..++|+||+||+|||+|+++||+||+-.+
T Consensus 56 gy~cE~~fg~aL~l~p~lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd- 134 (298)
T COG4989 56 GYQCEALFGEALKLAPGLREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMD- 134 (298)
T ss_pred CccHHHHHHHHHhcChhhhhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCC-
Confidence 3456777775 37999999999993 134779999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccCh-hhhHHHHHHHhCCeEEEecccccc
Q 023592 73 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G 150 (280)
-+++-+++..|++.||||++|||||++.+++-+.+. ..+.+.+|+++++++... .++.+++|+.+.|..+|||||++|
T Consensus 135 ~eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG 214 (298)
T COG4989 135 AEEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGG 214 (298)
T ss_pred HHHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCC
Confidence 699999999999999999999999999999888876 556899999999988654 467999999999999999999888
Q ss_pred cccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCCCceeeec
Q 023592 151 LLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG-VSIPVVAVRYILDQPAVAGSMIG 229 (280)
Q Consensus 151 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~s~~q~al~~~l~~~~v~~~i~G 229 (280)
.+- ..+ .+.+.+.+++..+|.++| .|..++|++|++.+|.-..+|+|
T Consensus 215 ~~F---~g~-----------------------------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiG 262 (298)
T COG4989 215 GLF---LGD-----------------------------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIG 262 (298)
T ss_pred ccc---cCC-----------------------------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceec
Confidence 432 211 124445689999999999 69999999999999999999999
Q ss_pred ccCCCHhHHHHhHhhhcCCCCHHHHHHHHHHH
Q 023592 230 VRLGLAEHIQDTNAIFMLSLDEDDVNSIQEVT 261 (280)
Q Consensus 230 ~~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~ 261 (280)
+. +++++.+.++|++..||.++|=+|-.+.
T Consensus 263 t~--~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa 292 (298)
T COG4989 263 TG--NLERIRAAIKALSLTLTRQQWFEIYTAA 292 (298)
T ss_pred CC--CHHHHHHHHHHhhccccHHHHHHHHHHh
Confidence 99 9999999999999999999999997765
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=8.6e-36 Score=260.52 Aligned_cols=216 Identities=19% Similarity=0.263 Sum_probs=182.7
Q ss_pred ccchHhhhc----CCCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcH---HHHHHHHHH
Q 023592 10 SSSIEFVER----GHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGY---LDALNHLTD 82 (280)
Q Consensus 10 ~~se~~~~~----~~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~---~~~~~~L~~ 82 (280)
++||.++|+ +.|++++++||+.. +.--+.+.+++-++++|++||+||+|+|+||..+...-+. ..+++++++
T Consensus 60 g~sE~~lgkaL~~~~Rekv~LaTKlp~-~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~k 138 (391)
T COG1453 60 GESEEFLGKALKDGYREKVKLATKLPS-WPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEK 138 (391)
T ss_pred CCchHHHHHHhhhcccceEEEEeecCC-ccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHH
Confidence 589999997 58999999999953 3334789999999999999999999999999875521111 247999999
Q ss_pred HHHcCCccEEEccCCCH-HHHHHHHHcCCCeeEeeeeccccccChh--hhHHHHHHHhCCeEEEecccccccccccccCC
Q 023592 83 LKEEGKIKTVALTNFDT-ERLRIILENGIPVVSNQVQHSVVDMRPQ--QKMAELCQLTGVKLITYGTVMGGLLSEKFLDT 159 (280)
Q Consensus 83 l~~~Gkir~iGvs~~~~-~~l~~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~via~spl~~G~L~~~~~~~ 159 (280)
++++|+||++|+|.|+. +.+.+++. ..+++++|++||.+++... .+.+++|.++|+||+.++|+.+|-|..+
T Consensus 139 ak~eGkIr~~GFSfHgs~e~~~~iv~-a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~---- 213 (391)
T COG1453 139 AKAEGKIRNAGFSFHGSTEVFKEIVD-AYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN---- 213 (391)
T ss_pred HHhcCcEEEeeecCCCCHHHHHHHHh-cCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC----
Confidence 99999999999999996 67777777 5779999999999998765 3789999999999999999988876532
Q ss_pred CCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcC--CCHHHHHHHHHHhCCCCceeeecccCCCHhH
Q 023592 160 NLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHG--VSIPVVAVRYILDQPAVAGSMIGVRLGLAEH 237 (280)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~--~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~ 237 (280)
.| +++.++++++. .||+.+|+||++++|.|+++++|++ +++|
T Consensus 214 ---vP-------------------------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~--~~~~ 257 (391)
T COG1453 214 ---VP-------------------------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMN--TPEQ 257 (391)
T ss_pred ---CC-------------------------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCC--CHHH
Confidence 22 68888888875 5999999999999999999999999 9999
Q ss_pred HHHhHhhhcC--C-CCHHHHHHHHHHHhcCCCC
Q 023592 238 IQDTNAIFML--S-LDEDDVNSIQEVTKKGKDL 267 (280)
Q Consensus 238 l~~nl~a~~~--~-Lt~e~~~~l~~~~~~~~~~ 267 (280)
++||++.++. | ||++|++.|.++-+.....
T Consensus 258 l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~ 290 (391)
T COG1453 258 LEENLKIASELEPSLTEEELQILEKVEEIYRES 290 (391)
T ss_pred HHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHH
Confidence 9999999875 4 9999998888776554433
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=6.8e-33 Score=232.26 Aligned_cols=236 Identities=18% Similarity=0.193 Sum_probs=189.3
Q ss_pred ccchHhhhc----CCCCCeEEEeeccCC---C---CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCC---CCcHHHH
Q 023592 10 SSSIEFVER----GHQSSWISLTKWVPP---P---VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYS---NPGYLDA 76 (280)
Q Consensus 10 ~~se~~~~~----~~R~~~~I~tK~~~~---~---~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~---~~~~~~~ 76 (280)
+.||+.+|. -||+.+||+||++.- + .+++.+.+++++++||+||++||+|++++|..+.. .....|+
T Consensus 80 s~se~~lg~al~~vPR~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Et 159 (342)
T KOG1576|consen 80 SRSEEGLGLALKDVPREAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNET 159 (342)
T ss_pred chhHHHHHHHHhhCChhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHH
Confidence 457777775 399999999999852 2 57899999999999999999999999999987654 1225799
Q ss_pred HHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEee--eeccccccChhhhHHHHHHHhCCeEEEeccccccccc
Q 023592 77 LNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQ--VQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLLS 153 (280)
Q Consensus 77 ~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L~ 153 (280)
+.+|+++|++||||+||++.+..+.+.+..+. ....+++- ..|++.+.. .-..+++.+.+|++|+.-++++.|+|+
T Consensus 160 lp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~t-Ll~~~~~~~sk~vgVi~AsalsmgLLt 238 (342)
T KOG1576|consen 160 LPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNT-LLRYLKRLKSKGVGVINASALSMGLLT 238 (342)
T ss_pred HHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHH-HHHHHHHHHhcCceEEehhhHHHHHhh
Confidence 99999999999999999999999999999876 23344444 777775533 346788888999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCC
Q 023592 154 EKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLG 233 (280)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~ 233 (280)
.+-.+.|||.. +.+.+......+.|++.|++.+.+|++|.++.++++++++|++
T Consensus 239 ~~gp~~wHPaS------------------------~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~-- 292 (342)
T KOG1576|consen 239 NQGPPPWHPAS------------------------DELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMS-- 292 (342)
T ss_pred cCCCCCCCCCC------------------------HHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCc--
Confidence 88777777654 2344445677888999999999999999999999999999999
Q ss_pred CHhHHHHhHhhhcCCCCHHHHH----HHHHHHhcCCCCccccCC
Q 023592 234 LAEHIQDTNAIFMLSLDEDDVN----SIQEVTKKGKDLLGVIGD 273 (280)
Q Consensus 234 ~~~~l~~nl~a~~~~Lt~e~~~----~l~~~~~~~~~~~~~~~~ 273 (280)
+.++++.|+++....||..+-+ .+++.++. -....|.|.
T Consensus 293 s~~~l~~nLdan~~~ls~~~~Qevl~~~r~~~~~-~kn~~W~g~ 335 (342)
T KOG1576|consen 293 SRQLLRINLDANFDRLSSKHEQEVLRILREILKE-TKNEEWEGG 335 (342)
T ss_pred hHHHHHHHHHhhhccccchhHHHHHHHHHHHhhh-hccCCCCCC
Confidence 9999999999876677763333 33444422 244668544
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.06 E-value=1.1e-05 Score=67.70 Aligned_cols=72 Identities=24% Similarity=0.366 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEec
Q 023592 73 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 145 (280)
+.+.|+.||+++.+|+|..||+|.++..++++++.. .+.|...|+...-+|.-+ .++.+||.+++|.+..++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 357899999999999999999999999999999987 678999999999876555 589999999999998765
No 19
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=89.57 E-value=4.3 Score=35.34 Aligned_cols=68 Identities=4% Similarity=-0.051 Sum_probs=48.4
Q ss_pred HHHHHHHcCCccEEEc--cCCCHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccc
Q 023592 79 HLTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 79 ~L~~l~~~Gkir~iGv--s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 147 (280)
.|.+-.++|+. -+|+ ..-++...+.+-..+++|.++-.+..+++...-..++..|+..|+..+++-|-
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~ 78 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPT 78 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 35555566775 4553 23334444444445899999999999988776677899999999999988764
No 20
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=89.21 E-value=1.3 Score=36.75 Aligned_cols=104 Identities=17% Similarity=0.182 Sum_probs=74.3
Q ss_pred HHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccc
Q 023592 45 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVD 123 (280)
Q Consensus 45 ~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~ 123 (280)
.+++.|....-+.+|.+.+...-.. +..--+.|+++..=|+---+++.||..+....-+-. |--|..-+.+|+..+
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqtLQ~---~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd 139 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQTLQA---VRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD 139 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhHHHh---HhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC
Confidence 3445555666667777777642111 223445577777788888899999998877766653 445888889999876
Q ss_pred cCh-----hhhHHHHHHHhCCeEEEeccccccc
Q 023592 124 MRP-----QQKMAELCQLTGVKLITYGTVMGGL 151 (280)
Q Consensus 124 ~~~-----~~~~~~~~~~~gi~via~spl~~G~ 151 (280)
... -+++-++|++.|+.|.-..++.++.
T Consensus 140 TPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 140 TPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 443 3678999999999999999887764
No 21
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=86.78 E-value=5.6 Score=34.29 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHHHHcCCCeeE
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 114 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvs~~~~~~l~~~~~~~~~~~~ 114 (280)
.++.+...+-++. |..+|+++|.+-..-.+... +...+.++.++++++.+ .++...++....+.++.+.+.+ ++.
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~-p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g--~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAV-PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG--VDE 90 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCcccc-ccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC--cCE
Confidence 3455555555554 77899999988877654332 32456778888999988 6777777766677777777754 445
Q ss_pred eeeeccccc--------c------ChhhhHHHHHHHhCCeEEEec
Q 023592 115 NQVQHSVVD--------M------RPQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 115 ~q~~~n~~~--------~------~~~~~~~~~~~~~gi~via~s 145 (280)
+++.+..-+ + ..-...+..+++.|+.+...-
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 555544321 1 112357888999998877644
No 22
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=86.17 E-value=8.5 Score=33.35 Aligned_cols=66 Identities=5% Similarity=-0.150 Sum_probs=45.6
Q ss_pred HHHHHcCCccEEEc--cCCCHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccc
Q 023592 81 TDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 81 ~~l~~~Gkir~iGv--s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 147 (280)
.+-.++|+. .+|+ +.-++...+.+-..+++|.++-.+..+++...-..++..++..|+..+++-|-
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~ 71 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPW 71 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCC
Confidence 344445664 3443 33334444444445889999999999988776667888899999999888764
No 23
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=86.12 E-value=11 Score=33.12 Aligned_cols=67 Identities=7% Similarity=0.054 Sum_probs=46.5
Q ss_pred HHHHHHcCCccEEEc--cCCCHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccc
Q 023592 80 LTDLKEEGKIKTVAL--TNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 80 L~~l~~~Gkir~iGv--s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 147 (280)
|.+..++|+.- +|+ ..-++...+.+-..+++|.++-.+..+++......++..++..|+..++.-|-
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 44555567753 443 33334444444444889999999999988776667888999999988887663
No 24
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=85.34 E-value=0.44 Score=43.19 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=41.6
Q ss_pred CCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeE
Q 023592 87 GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 141 (280)
Q Consensus 87 Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 141 (280)
|+|||+||--++.+.+.++......-++.+.+..++-...+..+++.|++.||+-
T Consensus 264 GriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip~ 318 (513)
T COG1140 264 GRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIPD 318 (513)
T ss_pred cceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCcH
Confidence 9999999999999999999875333555556666554455667888888888763
No 25
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=80.76 E-value=38 Score=29.55 Aligned_cols=100 Identities=8% Similarity=0.007 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc--CCCeeEe
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN 115 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~--~~~~~~~ 115 (280)
+.+.+.+...+.. .-|.|+||+=.- ...... .+.+...++.+++.-.+ -+.+-++.++.++++++. +. +-++
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE-~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~-~iIN 96 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEE-PETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGP-PLIN 96 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhH-HHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCC-CEEE
Confidence 5566666666554 679999998753 111221 34556666666654333 488999999999999986 32 2222
Q ss_pred eeeccccccChhhhHHHHHHHhCCeEEEecc
Q 023592 116 QVQHSVVDMRPQQKMAELCQLTGVKLITYGT 146 (280)
Q Consensus 116 q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 146 (280)
- .+... .....+++.+++.|+.+++..-
T Consensus 97 s--Is~~~-~~~~~~~~l~~~~g~~vv~m~~ 124 (261)
T PRK07535 97 S--VSAEG-EKLEVVLPLVKKYNAPVVALTM 124 (261)
T ss_pred e--CCCCC-ccCHHHHHHHHHhCCCEEEEec
Confidence 2 22211 1134789999999999998653
No 26
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=80.74 E-value=49 Score=30.83 Aligned_cols=86 Identities=15% Similarity=0.156 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEe
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 115 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~ 115 (280)
+.+++.+.+.+++..+. =+|++-+|.. -..+.++.+++.|+ ..|+-+-...-+...+...
T Consensus 139 ~mt~d~~~~~ie~qa~~----GVDfmTiHcG--------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n------ 198 (431)
T PRK13352 139 DMTEDDLFDVIEKQAKD----GVDFMTIHCG--------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHN------ 198 (431)
T ss_pred hCCHHHHHHHHHHHHHh----CCCEEEEccc--------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHc------
Confidence 56788888888888774 7788999963 23457889998885 5788777777666665531
Q ss_pred eeeccccccChhhhHHHHHHHhCCeEEE
Q 023592 116 QVQHSVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 116 q~~~n~~~~~~~~~~~~~~~~~gi~via 143 (280)
..=|++.... +++++.|+++++.+.-
T Consensus 199 -~~ENPlye~f-D~lLeI~~~yDVtlSL 224 (431)
T PRK13352 199 -NKENPLYEHF-DYLLEILKEYDVTLSL 224 (431)
T ss_pred -CCcCchHHHH-HHHHHHHHHhCeeeec
Confidence 2235555444 5899999999999873
No 27
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=80.31 E-value=50 Score=30.67 Aligned_cols=86 Identities=14% Similarity=0.130 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEe
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 115 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~ 115 (280)
+.+++.+.+.+++..+. -+|++-+|.. -..+.++.+++.|+ ..|+-+-...-+...+...
T Consensus 136 ~mt~d~~~~~ie~qa~d----GVDfmTiH~G--------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~------ 195 (423)
T TIGR00190 136 DMDEDDMFRAIEKQAKD----GVDFMTIHAG--------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHH------ 195 (423)
T ss_pred hCCHHHHHHHHHHHHHh----CCCEEEEccc--------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHc------
Confidence 56788888888888764 6788999962 24467889999885 5787777777666665531
Q ss_pred eeeccccccChhhhHHHHHHHhCCeEEE
Q 023592 116 QVQHSVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 116 q~~~n~~~~~~~~~~~~~~~~~gi~via 143 (280)
-.=|++.... +++++.|+++++.+.-
T Consensus 196 -~~ENPlye~f-D~lLeI~~~yDVtlSL 221 (423)
T TIGR00190 196 -HKENPLYKNF-DYILEIAKEYDVTLSL 221 (423)
T ss_pred -CCcCchHHHH-HHHHHHHHHhCeeeec
Confidence 2235554444 4899999999999873
No 28
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=79.69 E-value=31 Score=29.84 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=44.6
Q ss_pred HHHHHHcCCccEEE--ccCCCHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEecc
Q 023592 80 LTDLKEEGKIKTVA--LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 146 (280)
Q Consensus 80 L~~l~~~Gkir~iG--vs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 146 (280)
|.+..++|+. -+| +..-++..++.+...+.++.++-++.++++...-..++..++..|+.++++-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 3445566775 344 34444556666666688999999999997654444577777778888887755
No 29
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=78.28 E-value=20 Score=31.75 Aligned_cols=105 Identities=16% Similarity=0.168 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEee
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQ 116 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q 116 (280)
++.+. +..+-+.|.++|+++|.+-.++.|..- +...+.++.+..+.+...++..++. .+...++.+++.+.+...+-
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~-p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g~~~v~i~ 99 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWV-PQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAGADEVAVF 99 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccc-cccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcCCCEEEEE
Confidence 44444 445666799999999999866555322 1123345566666554456666655 47888888888755433333
Q ss_pred eeccccc------cCh------hhhHHHHHHHhCCeEEEe
Q 023592 117 VQHSVVD------MRP------QQKMAELCQLTGVKLITY 144 (280)
Q Consensus 117 ~~~n~~~------~~~------~~~~~~~~~~~gi~via~ 144 (280)
+..|-.+ +.. -.+.+++++++|+.+.+.
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~ 139 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGY 139 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 3333211 111 246899999999988643
No 30
>PRK00208 thiG thiazole synthase; Reviewed
Probab=76.23 E-value=51 Score=28.54 Aligned_cols=108 Identities=11% Similarity=0.013 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCee
Q 023592 34 PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 113 (280)
Q Consensus 34 ~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~ 113 (280)
..+.+.+...+-.+-..+-+++++|=|=.+..+....++..+++++.++|+++|.+- +=+++-++....++.+.+ ++
T Consensus 70 aG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~G--~~ 146 (250)
T PRK00208 70 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEAG--CA 146 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC--CC
Confidence 346688888888899999999999999999988877788899999999999999864 445666888878777753 33
Q ss_pred EeeeeccccccC---hhhhHHHHHHHh-CCeEEEe
Q 023592 114 SNQVQHSVVDMR---PQQKMAELCQLT-GVKLITY 144 (280)
Q Consensus 114 ~~q~~~n~~~~~---~~~~~~~~~~~~-gi~via~ 144 (280)
++..-=.++... ...++++..++. ++.|++-
T Consensus 147 ~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 147 AVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred EeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 332100111111 024556666664 7777754
No 31
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=72.31 E-value=14 Score=31.08 Aligned_cols=68 Identities=12% Similarity=0.252 Sum_probs=44.7
Q ss_pred HHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeEeeeecc
Q 023592 49 SRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHS 120 (280)
Q Consensus 49 SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n 120 (280)
....+|.||+-+++......... .+....+.+.. .+.++.+||. |.+.+.+.++.+ ...++++|++-+
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~--~~~a~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~-~~~~d~vQLHG~ 84 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQT--ITQIKKLASAV-PNHIDKVCVVVNPDLTTIEHILS-NTSINTIQLHGT 84 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHH-hCCCCEEEECCC
Confidence 34569999999975443322232 23333333333 2568889986 778888988887 466899999754
No 32
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=72.08 E-value=24 Score=30.26 Aligned_cols=75 Identities=12% Similarity=0.052 Sum_probs=51.1
Q ss_pred chHhhhcCCCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCc
Q 023592 12 SIEFVERGHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 89 (280)
Q Consensus 12 se~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gki 89 (280)
.+.|...-+++++.+--... .+.+.+......+-+.+-+++++|=+=.+..+..-.++..+++++-+.|+++|-+
T Consensus 51 ~~~~~~~i~~~~~~lLPNTa---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~ 125 (247)
T PF05690_consen 51 GDNILDYIDRSGYTLLPNTA---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV 125 (247)
T ss_dssp CHHCCCCTTCCTSEEEEE-T---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E
T ss_pred CccHHHHhcccCCEECCcCC---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE
Confidence 55565555666666554443 3557888888899999999999999998888766667788999999999999874
No 33
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=71.32 E-value=44 Score=27.85 Aligned_cols=39 Identities=18% Similarity=0.267 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhh
Q 023592 207 VSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 245 (280)
Q Consensus 207 ~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~ 245 (280)
.|-.++||+|++.++.-..+++|+.-++.+|.-.|+..+
T Consensus 72 ~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 72 TTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 466789999999887767789999888899999999876
No 34
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=70.91 E-value=44 Score=28.96 Aligned_cols=103 Identities=14% Similarity=0.066 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEe-cCCCC----CCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCC
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYS----NPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 111 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH-~~~~~----~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 111 (280)
.+.+.+.+...+.+ .-|.|+||+=.-- +|... ....+.+...++.+++.-.+ -+.+.++.++.++++++.+.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 36677777776665 6689999987433 34321 11124466677777666333 38999999999999999652
Q ss_pred eeEeeeeccccccChhhhHHHHHHHhCCeEEEecc
Q 023592 112 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 146 (280)
Q Consensus 112 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 146 (280)
.-+ +..+....+ .++++.+++.|.+++.+..
T Consensus 98 ~iI--Ndis~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 98 DII--NDVSGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred CEE--EeCCCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 221 222222111 5789999999999998754
No 35
>PRK13753 dihydropteroate synthase; Provisional
Probab=70.00 E-value=61 Score=28.63 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEe-cCCCCC-C---cHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCC
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSN-P---GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 111 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH-~~~~~~-~---~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 111 (280)
.+.+.+.+..++.+ .-|.|.||+=--- +|.... . .+..+...++.+++.+. .|.|-++.++.++++++.|..
T Consensus 22 ~~~d~a~~~a~~m~-~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~--~ISIDT~~~~va~~al~aGad 98 (279)
T PRK13753 22 LDPAGAVTAAIEML-RVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMH--RVSIDSFQPETQRYALKRGVG 98 (279)
T ss_pred CCHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC--cEEEECCCHHHHHHHHHcCCC
Confidence 36677777777765 4578888876544 343321 1 13335578888887753 489999999999999997654
Q ss_pred eeEeeeeccccccChhhhHHHHHHHhCCeEEEeccc
Q 023592 112 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 112 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 147 (280)
+.--. +-+ ....+.+.+.+.+++++.+-..
T Consensus 99 iINDV---sg~---~d~~~~~vva~~~~~vVlmH~~ 128 (279)
T PRK13753 99 YLNDI---QGF---PDPALYPDIAEADCRLVVMHSA 128 (279)
T ss_pred EEEeC---CCC---CchHHHHHHHHcCCCEEEEecC
Confidence 42211 211 1357888899999999987654
No 36
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=69.83 E-value=38 Score=30.53 Aligned_cols=93 Identities=11% Similarity=0.118 Sum_probs=54.0
Q ss_pred HhhcCCCcccEEEEec-CCCCCCcHHHHHHHHHHHHHcCCccE-EEccCC---CHHHHHHHHHc--CCCeeEeeeecccc
Q 023592 50 RRRMDVPCLDMLQFHW-WDYSNPGYLDALNHLTDLKEEGKIKT-VALTNF---DTERLRIILEN--GIPVVSNQVQHSVV 122 (280)
Q Consensus 50 L~~L~~d~iDl~~lH~-~~~~~~~~~~~~~~L~~l~~~Gkir~-iGvs~~---~~~~l~~~~~~--~~~~~~~q~~~n~~ 122 (280)
-+.+|.|+||+-+.-. |+......++....++...+.=.+-- |..|.. +++.++++++. +-++-++-+...
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~e-- 162 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED-- 162 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH--
Confidence 3578888888765332 22111112344444444433333333 555532 78999999886 333433333321
Q ss_pred ccChhhhHHHHHHHhCCeEEEeccc
Q 023592 123 DMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 123 ~~~~~~~~~~~~~~~gi~via~spl 147 (280)
.-+.+.+.|+++|..|++.+|.
T Consensus 163 ---n~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 163 ---NYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred ---HHHHHHHHHHHhCCeEEEEcHH
Confidence 1357999999999999999865
No 37
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=69.23 E-value=68 Score=27.85 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEE-EecCCCCCCc----HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCC
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 111 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~-lH~~~~~~~~----~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 111 (280)
.+++.+.+...+.+ .-|.++||+=- --.|+..... +..+...++.+++.-.+ -+.+-++.++.++++++.|.+
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~-plsiDT~~~~vi~~al~~G~~ 97 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV-PISVDTYRAEVARAALEAGAD 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCCHHHHHHHHHcCCC
Confidence 36677777776665 55899999932 1123322111 12256666666665222 489999999999999997543
Q ss_pred eeEeeeeccccccChhhhHHHHHHHhCCeEEEec
Q 023592 112 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 112 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 145 (280)
+ ++- .+... ..++++.+++.|..++.+.
T Consensus 98 i-INs--is~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 98 I-IND--VSGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred E-EEE--CCCCC---CchhHHHHHHcCCcEEEEe
Confidence 2 111 12211 3578999999999999854
No 38
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=68.49 E-value=78 Score=27.37 Aligned_cols=109 Identities=11% Similarity=0.005 Sum_probs=76.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCe
Q 023592 33 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 112 (280)
Q Consensus 33 ~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~ 112 (280)
....++.+...+-.+-..+-+++++|=|=.+..+..-.++..+++++.++|+++|.+- +=+++-++...+++.+.+ +
T Consensus 69 TaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~G--~ 145 (248)
T cd04728 69 TAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDAG--C 145 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHcC--C
Confidence 3346688888888899999999999999999988777777899999999999999864 445666788877777753 3
Q ss_pred eEeeeeccccccC--h-hhhHHHHHHH-hCCeEEEe
Q 023592 113 VSNQVQHSVVDMR--P-QQKMAELCQL-TGVKLITY 144 (280)
Q Consensus 113 ~~~q~~~n~~~~~--~-~~~~~~~~~~-~gi~via~ 144 (280)
+++..-=.+.... . ..+++...++ .++.|++-
T Consensus 146 ~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 146 AAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred CEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 3332100111111 0 2456666665 47777753
No 39
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=67.99 E-value=46 Score=28.00 Aligned_cols=82 Identities=11% Similarity=0.050 Sum_probs=53.0
Q ss_pred HhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEcc-CCCHHHHHHHHHcCCCeeEeeeeccccccChh
Q 023592 50 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQ 127 (280)
Q Consensus 50 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~ 127 (280)
...+|.||+-+++.-....... . +...++.+... +..+||. |.+.+.+.++++ ...++++|++-.. .
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs-~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~-~~~ld~VQlHG~e-----~ 86 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVS-P----EQAREIASAVPKVKVVGVFVNESIEEILEIAE-ELGLDAVQLHGDE-----D 86 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCC-H----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHH-hcCCCEEEECCCC-----C
Confidence 4568999988877663223333 2 23344444433 8899987 566678888887 5679999988653 3
Q ss_pred hhHHHHHHHhC-CeEE
Q 023592 128 QKMAELCQLTG-VKLI 142 (280)
Q Consensus 128 ~~~~~~~~~~g-i~vi 142 (280)
.+.++..+... +.|+
T Consensus 87 ~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 87 PEYIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHHHhhcCCceE
Confidence 45666666654 5555
No 40
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=67.88 E-value=12 Score=31.48 Aligned_cols=91 Identities=11% Similarity=0.118 Sum_probs=57.9
Q ss_pred HhhcCCCcccEEEEe-cCCCCCC----cHHHHHHHHHHHHH--cCCccEEEccCCCHHHHHHHHHcCCCeeEeeeecccc
Q 023592 50 RRRMDVPCLDMLQFH-WWDYSNP----GYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVV 122 (280)
Q Consensus 50 L~~L~~d~iDl~~lH-~~~~~~~----~~~~~~~~L~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~ 122 (280)
+..-|.|+||+=.-- +|..... .+..+...++.+++ .+. -+.+-++.++.++++++.+.++......+..
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~g~~~ind~~~~~~- 104 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKAGADIINDISGFED- 104 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHHTSSEEEETTTTSS-
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHcCcceEEecccccc-
Confidence 345689999985433 2221111 13345666666665 233 5888899999999999976554333332221
Q ss_pred ccChhhhHHHHHHHhCCeEEEeccc
Q 023592 123 DMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 123 ~~~~~~~~~~~~~~~gi~via~spl 147 (280)
..++++.++++|..+|++-.-
T Consensus 105 ----~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 ----DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp ----STTHHHHHHHHTSEEEEESES
T ss_pred ----cchhhhhhhcCCCEEEEEecc
Confidence 468999999999999987544
No 41
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=67.57 E-value=40 Score=30.80 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCC--CCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeee
Q 023592 40 SIVRESIDVSRRRMDVPCLDMLQFHWWDY--SNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQV 117 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~d~iDl~~lH~~~~--~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~ 117 (280)
..-+-.+-+.|.++|+++|++-..-.|.. ...+..++++.+ ++...+++.++. .+...++.+++.+.+...+-+
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i---~~~~~~~~~~l~-~n~~die~A~~~g~~~v~i~~ 142 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAV---RNLEGARFPVLT-PNLKGFEAAIAAGAKEVAVFA 142 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHH---HhccCCceeEEc-CCHHHHHHHHHcCcCEEEEEE
Confidence 44555667779999999999876555422 111234444444 343345555664 588999999987544333332
Q ss_pred eccccc------cCh------hhhHHHHHHHhCCeEEEe
Q 023592 118 QHSVVD------MRP------QQKMAELCQLTGVKLITY 144 (280)
Q Consensus 118 ~~n~~~------~~~------~~~~~~~~~~~gi~via~ 144 (280)
..+-.+ +.. -.+++++++++|+.|.++
T Consensus 143 s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~ 181 (347)
T PLN02746 143 SASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY 181 (347)
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 222111 111 136889999999888543
No 42
>PLN02489 homocysteine S-methyltransferase
Probab=65.68 E-value=1.1e+02 Score=27.83 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=49.2
Q ss_pred CCCeEEEeeccCCCC--------------CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 21 QSSWISLTKWVPPPV--------------KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 21 R~~~~I~tK~~~~~~--------------~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
+.+++|+.=+|+... ..+.+.+.+.....++.|--.-+|++.+--. +...|+...++.+++.
T Consensus 130 ~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~~~~~~~qi~~l~~~gvD~i~~ET~----~~l~E~~a~~~~~~~~ 205 (335)
T PLN02489 130 YRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEAGPDLIAFETI----PNKLEAQAYVELLEEE 205 (335)
T ss_pred CCCcEEEEEcCCccccccCCcccCCCCccCCCHHHHHHHHHHHHHHHHhCCCCEEEEecc----CChHHHHHHHHHHHHc
Confidence 346888888886321 1466888888888888775567999999853 3356777777777766
Q ss_pred C--CccEEEccC
Q 023592 87 G--KIKTVALTN 96 (280)
Q Consensus 87 G--kir~iGvs~ 96 (280)
+ +--.+.++.
T Consensus 206 ~~~~p~~iS~t~ 217 (335)
T PLN02489 206 NIKIPAWISFNS 217 (335)
T ss_pred CCCCeEEEEEEe
Confidence 4 555566653
No 43
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=65.15 E-value=42 Score=29.94 Aligned_cols=109 Identities=12% Similarity=0.135 Sum_probs=67.5
Q ss_pred CCccEEEccCCCHHHHHHHHHc--CCCeeEeeeeccccccCh---hhhHHHHHHHhCCeEEEecccccccccccccCCCC
Q 023592 87 GKIKTVALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMRP---QQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNL 161 (280)
Q Consensus 87 Gkir~iGvs~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~---~~~~~~~~~~~gi~via~spl~~G~L~~~~~~~~~ 161 (280)
.++-.+.=++.+.+.+.++.+. .-.+.+.-..+|-+|... +..+.+++++-+.-++.-++-.+ +
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss---------N-- 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVGSKNSS---------N-- 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEECCCCCc---------c--
Confidence 4555555556666666666554 111232223345444332 45688888888877775322100 0
Q ss_pred CCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCceeeecccCCCH
Q 023592 162 SIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLA 235 (280)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~ 235 (280)
...|.++|++++. ++.++-..|+..... ..+..|+| +|
T Consensus 225 ---------------------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGitaGAS--TP 268 (298)
T PRK01045 225 ---------------------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKT-VGVTAGAS--AP 268 (298)
T ss_pred ---------------------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCE-EEEEecCC--CC
Confidence 1678888888763 788999999976654 45789999 99
Q ss_pred hHHHHhH
Q 023592 236 EHIQDTN 242 (280)
Q Consensus 236 ~~l~~nl 242 (280)
+.+-+.+
T Consensus 269 ~~li~eV 275 (298)
T PRK01045 269 EWLVQEV 275 (298)
T ss_pred HHHHHHH
Confidence 9865554
No 44
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=64.69 E-value=1.2e+02 Score=28.10 Aligned_cols=107 Identities=13% Similarity=0.078 Sum_probs=63.5
Q ss_pred HHHHHHHHHHH--------hhcCCCcccEEEEecCCCCCC----cHHHHHHHHHHHHHc-CCccEEEcc---CCCHHHHH
Q 023592 40 SIVRESIDVSR--------RRMDVPCLDMLQFHWWDYSNP----GYLDALNHLTDLKEE-GKIKTVALT---NFDTERLR 103 (280)
Q Consensus 40 ~~i~~~i~~SL--------~~L~~d~iDl~~lH~~~~~~~----~~~~~~~~L~~l~~~-Gkir~iGvs---~~~~~~l~ 103 (280)
+.+++.++... ++...-.+|++.||....+.. .-.+..+.+++..+. +.---|+=| ..+++.++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLe 207 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLE 207 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHH
Confidence 55666666655 222223578899996533211 123556666665443 222233333 56789999
Q ss_pred HHHHc--CCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEecccccc
Q 023592 104 IILEN--GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 104 ~~~~~--~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 150 (280)
++++. +.++-++-..... .-+.+.+.|+++|..|++++|..-|
T Consensus 208 aaLe~~~G~kpLL~SAt~e~----Ny~~ia~lAk~yg~~Vvv~s~~Din 252 (389)
T TIGR00381 208 KAAEVAEGERCLLASANLDL----DYEKIANAAKKYGHVVLSWTIMDIN 252 (389)
T ss_pred HHHHHhCCCCcEEEecCchh----hHHHHHHHHHHhCCeEEEEcCCcHH
Confidence 99886 3345443333221 1247899999999999999987554
No 45
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=64.65 E-value=1.4e+02 Score=28.70 Aligned_cols=47 Identities=6% Similarity=-0.087 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 87 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~G 87 (280)
.+++.|.+.++...++.|+.++ .+...+.... ...+.+.++++++.|
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~-~~~~~~l~~~l~~~~ 268 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTIN-RKKFQEFCEEIIARN 268 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccC-HHHHHHHHHHHHhcC
Confidence 3778888888888888876543 3443333323 345667777777776
No 46
>PLN02363 phosphoribosylanthranilate isomerase
Probab=64.32 E-value=24 Score=30.67 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeEee
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 116 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~q 116 (280)
+.+.++.+. ++|.||+-+++......... .+....+-+......++.+||. +-+.+.+.++++ ...++++|
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs--~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~-~~~ld~VQ 127 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSIS--LSVAKEISQVAREGGAKPVGVFVDDDANTILRAAD-SSDLELVQ 127 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCC--HHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHH-hcCCCEEE
Confidence 456665554 58999999975443222222 3333444443333246679985 777888888887 46689999
Q ss_pred eecc
Q 023592 117 VQHS 120 (280)
Q Consensus 117 ~~~n 120 (280)
++-+
T Consensus 128 LHG~ 131 (256)
T PLN02363 128 LHGN 131 (256)
T ss_pred ECCC
Confidence 9754
No 47
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=63.86 E-value=18 Score=34.39 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=63.1
Q ss_pred CCCCeEEEeeccCCCCCCCHHH----------HHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCc
Q 023592 20 HQSSWISLTKWVPPPVKMTSSI----------VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 89 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~----------i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gki 89 (280)
-+-++|+++=+|..... -|.. ++-.-.+.-+|+.+.|+|.+. ++.+++++..++.+++|+.
T Consensus 156 L~G~~~lTaGLGGMgGA-QPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~--------~~ldeal~~~~~a~~~~~~ 226 (545)
T TIGR01228 156 LKGKWVLTAGLGGMGGA-QPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT--------DSLDEALARAEEAKAEGKP 226 (545)
T ss_pred CceeEEEEeCCCccccc-cHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc--------CCHHHHHHHHHHHHHcCCc
Confidence 36678999888752110 0000 011123445678888988652 2378999999999999999
Q ss_pred cEEEccCCCHHHHHHHHHcCCCe--eEeeeecc
Q 023592 90 KTVALTNFDTERLRIILENGIPV--VSNQVQHS 120 (280)
Q Consensus 90 r~iGvs~~~~~~l~~~~~~~~~~--~~~q~~~n 120 (280)
..||+-..-.+.+.++++.++.| ..-|+..|
T Consensus 227 ~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 227 ISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred eEEEeeccHHHHHHHHHHcCCCCCCcCCCCccc
Confidence 99999998889999999875444 44566654
No 48
>PRK05414 urocanate hydratase; Provisional
Probab=63.82 E-value=19 Score=34.40 Aligned_cols=92 Identities=15% Similarity=0.099 Sum_probs=63.3
Q ss_pred CCCCeEEEeeccCCCCCCCHHH----------HHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCc
Q 023592 20 HQSSWISLTKWVPPPVKMTSSI----------VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 89 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~----------i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gki 89 (280)
-+-++||++=+|..... -|.. ++-.-.+.-+|+.+.|+|.+. .+.+++++.+++.+++|+.
T Consensus 165 L~G~~~lTaGLGGMgGA-QPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~--------~~Ldeal~~~~~a~~~~~~ 235 (556)
T PRK05414 165 LAGRLVLTAGLGGMGGA-QPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA--------DDLDEALALAEEAKAAGEP 235 (556)
T ss_pred CceeEEEEecCCccccc-cHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc--------CCHHHHHHHHHHHHHcCCc
Confidence 46679999988752110 0000 011123445688889988652 2378999999999999999
Q ss_pred cEEEccCCCHHHHHHHHHcCCCe--eEeeeecc
Q 023592 90 KTVALTNFDTERLRIILENGIPV--VSNQVQHS 120 (280)
Q Consensus 90 r~iGvs~~~~~~l~~~~~~~~~~--~~~q~~~n 120 (280)
..||+-..-.+.+.++++.++.| ..-|+..|
T Consensus 236 ~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 236 LSIGLLGNAADVLPELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred eEEEEeccHHHHHHHHHHcCCCCCccCcCcccc
Confidence 99999988889999999875544 44566553
No 49
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=63.51 E-value=1.4e+02 Score=28.32 Aligned_cols=111 Identities=11% Similarity=0.054 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCC---HHHHHHHHHcCCCe
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILENGIPV 112 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~---~~~l~~~~~~~~~~ 112 (280)
..+++.+.+.+++....+ ..++.+.+-.+.......+.+++.|..++++..=.++.+++.. ++.+.++.+.+ +
T Consensus 59 ~Ltpee~~~~i~~v~~~~--~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~g--v 134 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEI--PQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLG--V 134 (442)
T ss_pred cCCHHHHHHHHHHHHHhc--CCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCC--C
Confidence 357888888888877665 2345566665322222124578899999988211257777655 56677776643 4
Q ss_pred eEeeeeccccccChh---------------------------hhHHHHHHHhCCeEEEecccccc
Q 023592 113 VSNQVQHSVVDMRPQ---------------------------QKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 113 ~~~q~~~n~~~~~~~---------------------------~~~~~~~~~~gi~via~spl~~G 150 (280)
+.+.+.++-++.... .+-+..+.+.|+.+....++--|
T Consensus 135 d~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlIpG 199 (442)
T TIGR01290 135 GHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLIPG 199 (442)
T ss_pred CeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEeeCC
Confidence 566666665432111 12245566778877777776554
No 50
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=63.40 E-value=45 Score=26.15 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=45.7
Q ss_pred CCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 21 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 21 R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
|=-+.|+-|+|.. .....|++.+.++.+.+. ....|++++...... ..+.++...|..+.++
T Consensus 47 RlG~sVSKKvg~A---V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~-~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGKA---HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQ-PDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEecccccc---hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccC-CCHHHHHHHHHHHHHH
Confidence 4557788888753 356778888888777663 357899999998776 5588888888777766
No 51
>PRK13796 GTPase YqeH; Provisional
Probab=62.60 E-value=78 Score=28.99 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=61.5
Q ss_pred CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCH
Q 023592 20 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 99 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~ 99 (280)
.+.-++|.+|+--.+.....+.+.+-+....+.+|....|++.+..-. ... ..++++.+.+..+.+.+-.+|.+|-+-
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~g-I~eL~~~I~~~~~~~~v~vvG~~NvGK 173 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GHG-IDELLEAIEKYREGRDVYVVGVTNVGK 173 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CCC-HHHHHHHHHHhcCCCeEEEEcCCCCcH
Confidence 556788999986533333456677667777777786555777665432 223 678888888887888999999999998
Q ss_pred HHHHHHHH
Q 023592 100 ERLRIILE 107 (280)
Q Consensus 100 ~~l~~~~~ 107 (280)
..+...+.
T Consensus 174 STLiN~L~ 181 (365)
T PRK13796 174 STLINRII 181 (365)
T ss_pred HHHHHHHH
Confidence 77766653
No 52
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=62.09 E-value=24 Score=29.61 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=50.5
Q ss_pred HhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeEeeeeccccccChhh
Q 023592 50 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRPQQ 128 (280)
Q Consensus 50 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~ 128 (280)
+..+|.||+-+++......... .+..+.+.+.. .+.+..+||. +.+.+.+.++++ ...++++|++-+. ..
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~--~~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~-~~~~d~vQLHg~e-----~~ 89 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVS--PEQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVE-TVPLDLLQLHGDE-----TP 89 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCC--HHHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHH-hcCCCEEEECCCC-----CH
Confidence 3458999999974443222222 23333333332 3568899987 667788888887 5678999997543 22
Q ss_pred hHHHHHHH-hCCeEE
Q 023592 129 KMAELCQL-TGVKLI 142 (280)
Q Consensus 129 ~~~~~~~~-~gi~vi 142 (280)
+.+...++ .++.++
T Consensus 90 ~~~~~l~~~~~~~ii 104 (210)
T PRK01222 90 EFCRQLKRRYGLPVI 104 (210)
T ss_pred HHHHHHHhhcCCcEE
Confidence 34445554 345554
No 53
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=61.80 E-value=42 Score=28.80 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCc
Q 023592 35 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 89 (280)
Q Consensus 35 ~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gki 89 (280)
.+.+.+....-..-+.+-+++|+|-+=.+-+.+.-.++.-+++++.|.|+++|-+
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~ 132 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFV 132 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCE
Confidence 3567888888888999999999999999998887778788999999999999875
No 54
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=60.30 E-value=89 Score=25.85 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCH--HHHHHHHHcCCCeeEeee
Q 023592 40 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQV 117 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~--~~l~~~~~~~~~~~~~q~ 117 (280)
+.....+...++..+..--.+++--...........+.+.+..+++.|- .+++.+++. ..+..+. ..+|+++=+
T Consensus 98 ~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~--~~~~d~iKl 173 (240)
T cd01948 98 PDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLK--RLPVDYLKI 173 (240)
T ss_pred cHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHH--hCCCCEEEE
Confidence 4556677777888777643333333222222224568899999999998 577776653 3333433 345777766
Q ss_pred eccccccC--------hhhhHHHHHHHhCCeEEEec
Q 023592 118 QHSVVDMR--------PQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 118 ~~n~~~~~--------~~~~~~~~~~~~gi~via~s 145 (280)
..+.+... .-+.++..|+..|+.|++-.
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 66554321 12467889999999999754
No 55
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=60.29 E-value=36 Score=30.09 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=65.1
Q ss_pred HHHHHHHc--CCccEEEccCCCHHHHHHHHHc---CCCeeEeeeeccccccCh---hhhHHHHHHHhCCeEEEecccccc
Q 023592 79 HLTDLKEE--GKIKTVALTNFDTERLRIILEN---GIPVVSNQVQHSVVDMRP---QQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 79 ~L~~l~~~--Gkir~iGvs~~~~~~l~~~~~~---~~~~~~~q~~~n~~~~~~---~~~~~~~~~~~gi~via~spl~~G 150 (280)
.++.+... +++-.+.=++++.+.+.++.+. .. +...-..+|-+|... +..+.+++++-++-++.-++-..
T Consensus 145 ~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~-~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVIGg~~Ss- 222 (281)
T PF02401_consen 145 DVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRF-PELEGPVFNTICYATQNRQEAARELAKEVDAMIVIGGKNSS- 222 (281)
T ss_dssp HHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHS-TCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEES-TT-H-
T ss_pred hhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhC-ccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEecCCCCc-
Confidence 34444433 3666677777777766666554 22 222223455544322 45677777777766664222100
Q ss_pred cccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCc
Q 023592 151 LLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV------SIPVVAVRYILDQPAVA 224 (280)
Q Consensus 151 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~ 224 (280)
. ...|.++|++++. ++.++...|+..... .
T Consensus 223 -----------------------------------------N--T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~-V 258 (281)
T PF02401_consen 223 -----------------------------------------N--TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKK-V 258 (281)
T ss_dssp -----------------------------------------H--HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SE-E
T ss_pred -----------------------------------------c--HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCE-E
Confidence 0 2688999999874 789999999987764 4
Q ss_pred eeeecccCCCHhHHHHhH
Q 023592 225 GSMIGVRLGLAEHIQDTN 242 (280)
Q Consensus 225 ~~i~G~~~~~~~~l~~nl 242 (280)
.+..|+| +|+.+-+.+
T Consensus 259 GItaGAS--TP~~ii~eV 274 (281)
T PF02401_consen 259 GITAGAS--TPDWIIEEV 274 (281)
T ss_dssp EEEE-TT--S-HHHHHHH
T ss_pred EEEccCC--CCHHHHHHH
Confidence 5789999 999976655
No 56
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=58.53 E-value=69 Score=27.90 Aligned_cols=55 Identities=15% Similarity=-0.004 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHhhc------CCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCc
Q 023592 35 VKMTSSIVRESIDVSRRRM------DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 89 (280)
Q Consensus 35 ~~~~~~~i~~~i~~SL~~L------~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gki 89 (280)
.+++.+...+-.+-+.+-. ++++|=|=.+..+..-.|+..+++++-+.|+++|-+
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~ 139 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT 139 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence 4556676666666666666 789999888888777777788999999999999874
No 57
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=58.11 E-value=45 Score=23.38 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=27.3
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 023592 185 WGGWSQFQVLLQTLKRIASKHGVSIPVVAVRYI 217 (280)
Q Consensus 185 ~~~~~~~~~~~~~l~~la~~~~~s~~q~al~~~ 217 (280)
..-++...+.+..|.+||++.|++..++|.-++
T Consensus 44 G~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 44 GQIPEKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 334778888899999999999999999886443
No 58
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=57.85 E-value=36 Score=28.88 Aligned_cols=98 Identities=18% Similarity=0.239 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEc----cCCCHHHHHHHHHc-CCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccc
Q 023592 73 YLDALNHLTDLKEEGKIKTVAL----TNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGv----s~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 147 (280)
.+++.++|..|+ +.+|.. |.+....++.+.+. +. -.|.++-+..+.+++...-+.|.-++.-+.-
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl------~~~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vs 144 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGL------KVYAPLWGRDPEELLEEMVEAGFEAIIVAVS 144 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCC------EEeecccCCCHHHHHHHHHHcCCeEEEEEEe
Confidence 456666777766 444443 33333444554443 33 3345554444557787778888777777766
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCCCHH
Q 023592 148 MGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGVSIP 210 (280)
Q Consensus 148 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~ 210 (280)
+.|+-. .+ .+.+.-.+-.+.+..++++||+.|+
T Consensus 145 a~gL~~-~~-----------------------------lGr~i~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 145 AEGLDE-SW-----------------------------LGRRIDREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred ccCCCh-HH-----------------------------hCCccCHHHHHHHHHHHHhcCCCcc
Confidence 666421 00 1111112335789999999998774
No 59
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=57.34 E-value=1.3e+02 Score=29.02 Aligned_cols=86 Identities=19% Similarity=0.192 Sum_probs=46.9
Q ss_pred CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHH--------------H
Q 023592 20 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK--------------E 85 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~--------------~ 85 (280)
+.+-++|+|-+- ++-|-..++...+.++.+.++++.++.+..........-.+|+.++ +
T Consensus 85 ~P~~I~V~sTC~-------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv~~~~~~~~~~~~~~~ 157 (511)
T TIGR01278 85 KPDLIVVTPSCT-------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLVRRFAKEQPKPGRTTE 157 (511)
T ss_pred CCCEEEEeCCCh-------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHHHHHHhccccccccCC
Confidence 334566666663 3444445555555555556889999988655432222222222222 3
Q ss_pred cCCccEEEccCC------CHHHHHHHHHc-CCCe
Q 023592 86 EGKIKTVALTNF------DTERLRIILEN-GIPV 112 (280)
Q Consensus 86 ~Gkir~iGvs~~------~~~~l~~~~~~-~~~~ 112 (280)
++.|.-||.++. +...+..+++. |+++
T Consensus 158 ~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~v 191 (511)
T TIGR01278 158 KPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEV 191 (511)
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 456888998763 33556666654 4433
No 60
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=56.75 E-value=87 Score=27.28 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHHHcCCCeeEe
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSN 115 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~~~~~~~~ 115 (280)
++.+...+- -+.|.++|+++|.+-. |... .+..+..+.+.+.++ .+-.++...+.+.++.+.+.+.+...+
T Consensus 19 ~s~~~k~~i-~~~L~~~Gv~~IEvG~---P~~~----~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 19 FDTEDKIEI-AKALDAFGVDYIELTS---PAAS----PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVETGVDGVDL 90 (262)
T ss_pred CCHHHHHHH-HHHHHHcCCCEEEEEC---CCCC----HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHcCcCEEEE
Confidence 455555444 4559999999988873 4332 233444444444333 444556667788899998876553333
Q ss_pred eeecccc------ccCh------hhhHHHHHHHhCCeEEEe
Q 023592 116 QVQHSVV------DMRP------QQKMAELCQLTGVKLITY 144 (280)
Q Consensus 116 q~~~n~~------~~~~------~~~~~~~~~~~gi~via~ 144 (280)
-+..|.. .+.. -.+.+.+++++|+.|...
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 3332211 1111 235678889999876654
No 61
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=56.72 E-value=1.4e+02 Score=26.44 Aligned_cols=104 Identities=13% Similarity=0.043 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCC------HHHHHHHHHc--C
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFD------TERLRIILEN--G 109 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~------~~~l~~~~~~--~ 109 (280)
+.+.+.+-...-++.|.-.-+|++.+-....-.. .+.+++.+++. +|=-+|+++-.+ ...+.++... +
T Consensus 128 ~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~E-a~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~ 203 (300)
T COG2040 128 SQDALYKFHRPRIEALNEAGADLLACETLPNITE-AEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSEAAAILAG 203 (300)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEeecccCChHH-HHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHHHHHHHhc
Confidence 4565555566677777777799999885432222 23444444444 898999998663 2334454443 3
Q ss_pred CCeeEeeeeccccccChhhhHHHHH--HHhCCeEEEecc
Q 023592 110 IPVVSNQVQHSVVDMRPQQKMAELC--QLTGVKLITYGT 146 (280)
Q Consensus 110 ~~~~~~q~~~n~~~~~~~~~~~~~~--~~~gi~via~sp 146 (280)
. +-+.-+.+|....+.-..++++. ...|+++++|--
T Consensus 204 ~-~~iaa~gvNC~~p~~~~a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 204 L-PNIAALGVNCCHPDHIPAAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred C-cchhheeeccCChhhhHHHHHHHHhcCCCCceEEcCC
Confidence 3 44555666654434345677777 445789998844
No 62
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=56.66 E-value=63 Score=28.53 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCccEEEccCCCHHHHHHHHHc---CCCeeEeeeeccccccC---hhhhHHHHHHHhCCeEEEeccccccc
Q 023592 78 NHLTDLKEEGKIKTVALTNFDTERLRIILEN---GIPVVSNQVQHSVVDMR---PQQKMAELCQLTGVKLITYGTVMGGL 151 (280)
Q Consensus 78 ~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~---~~~~~~~q~~~n~~~~~---~~~~~~~~~~~~gi~via~spl~~G~ 151 (280)
+.++.|....++-.+-=++.+.+.+.++.+. ..+..-+. .+|-+|.. .+..+.+++++-++-++.-+.-.
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~-~~nTIC~AT~~RQ~a~~~la~~vD~miVVGg~nS--- 220 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVP-VFNTICYATQNRQDAVKELAPEVDLMIVIGGKNS--- 220 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCC-CCCCcccccHHHHHHHHHHHhhCCEEEEECCCCC---
Confidence 4455554445555555556666666665553 22101111 23444432 24568888888787776532210
Q ss_pred ccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCce
Q 023592 152 LSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV------SIPVVAVRYILDQPAVAG 225 (280)
Q Consensus 152 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~ 225 (280)
.+ ...|.++|+++|. ++.++-..|+..... ..
T Consensus 221 ------sN-----------------------------------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VG 258 (280)
T TIGR00216 221 ------SN-----------------------------------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VG 258 (280)
T ss_pred ------ch-----------------------------------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EE
Confidence 00 2688899988874 788999999977655 46
Q ss_pred eeecccCCCHhHHHHhH
Q 023592 226 SMIGVRLGLAEHIQDTN 242 (280)
Q Consensus 226 ~i~G~~~~~~~~l~~nl 242 (280)
+..|+| +|+.+-+.+
T Consensus 259 iTAGAS--TP~~li~eV 273 (280)
T TIGR00216 259 ITAGAS--TPDWIIEEV 273 (280)
T ss_pred EEecCC--CCHHHHHHH
Confidence 789999 999875544
No 63
>PRK02866 cyanate hydratase; Validated
Probab=55.05 E-value=22 Score=28.17 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhhcCCCCHHHHHHHHHH
Q 023592 196 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 260 (280)
Q Consensus 196 ~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~ 260 (280)
+.+.+.-.+.|.|..++|=+=-++.-.++.++.|..+.++++.+...+.++ |+++....|...
T Consensus 8 e~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~lGQ~~ls~e~A~kla~~Lg--L~~~~~~~l~~~ 70 (147)
T PRK02866 8 EKILAAKKEKGLTWADIAEAIGLSEVWVTAALLGQMTLPAEEAEKVAELLG--LDEDAVALLQEV 70 (147)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhCCCCCCHHHHHHHHHHhC--CCHHHHHHHhcC
Confidence 556666666777777777666666666777777877778888888888775 999987766654
No 64
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=54.99 E-value=71 Score=28.24 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=68.7
Q ss_pred HHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccC---hhhhHHHHHHHhCCeEEEeccccccccccc
Q 023592 80 LTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMR---PQQKMAELCQLTGVKLITYGTVMGGLLSEK 155 (280)
Q Consensus 80 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~---~~~~~~~~~~~~gi~via~spl~~G~L~~~ 155 (280)
++.|.-..++-.+-=++.+.+.+.++.+. .-++.-+.+ +|-+|.. .+..+.+++++-++-++.-+.-.
T Consensus 150 ~~~l~~~~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v-~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~S------- 221 (281)
T PRK12360 150 VENIPFLDKACVVAQTTIIPELWEDILNVIKLKSKELVF-FNTICSATKKRQESAKELSKEVDVMIVIGGKHS------- 221 (281)
T ss_pred HhhCccccCEEEEECCCCcHHHHHHHHHHHHHhCccccc-CCCcchhhhhHHHHHHHHHHhCCEEEEecCCCC-------
Confidence 33333334555555556666666665554 111111122 4544433 24568888888887777532210
Q ss_pred ccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCceeeec
Q 023592 156 FLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIG 229 (280)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~~i~G 229 (280)
.+ ...|.++|++.+. ++.++--.|+..... ..+..|
T Consensus 222 --sN-----------------------------------T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~-VGitaG 263 (281)
T PRK12360 222 --SN-----------------------------------TQKLVKICEKNCPNTFHIETADELDLEMLKDYKI-IGITAG 263 (281)
T ss_pred --cc-----------------------------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEcc
Confidence 00 1678888888764 788999999987654 456899
Q ss_pred ccCCCHhHHHHhH
Q 023592 230 VRLGLAEHIQDTN 242 (280)
Q Consensus 230 ~~~~~~~~l~~nl 242 (280)
+| +|+.+-+.+
T Consensus 264 AS--TP~~li~eV 274 (281)
T PRK12360 264 AS--TPDWIIEEV 274 (281)
T ss_pred CC--CCHHHHHHH
Confidence 99 999876554
No 65
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=54.88 E-value=1.7e+02 Score=27.02 Aligned_cols=89 Identities=13% Similarity=0.045 Sum_probs=60.6
Q ss_pred EEEEecCCCC----------CCcHHHHHHHHHHHHHcCCccEEEcc-------CCCHHHHHHHHHc--CC------CeeE
Q 023592 60 MLQFHWWDYS----------NPGYLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILEN--GI------PVVS 114 (280)
Q Consensus 60 l~~lH~~~~~----------~~~~~~~~~~L~~l~~~Gkir~iGvs-------~~~~~~l~~~~~~--~~------~~~~ 114 (280)
.+.||.|+.. .-.++++++++.+..++.. |.|-+- |.+.+++.++.+. +. +..+
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~V 309 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHV 309 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEE
Confidence 3678877432 1126789999988875532 234332 6777777777765 55 6799
Q ss_pred eeeeccccccC----h----hhhHHHHHHHhCCeEEEeccccc
Q 023592 115 NQVQHSVVDMR----P----QQKMAELCQLTGVKLITYGTVMG 149 (280)
Q Consensus 115 ~q~~~n~~~~~----~----~~~~~~~~~~~gi~via~spl~~ 149 (280)
+-++||+.... + -..+.+.++++||.+......+.
T Consensus 310 NLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 310 NLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 99999986432 1 13567778899999999887655
No 66
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=54.29 E-value=68 Score=27.61 Aligned_cols=20 Identities=0% Similarity=0.003 Sum_probs=16.0
Q ss_pred hhHHHHHHHhCCeEEEeccc
Q 023592 128 QKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 128 ~~~~~~~~~~gi~via~spl 147 (280)
...+++|+..|...+...|.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~ 112 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAA 112 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCC
Confidence 45788999999999877664
No 67
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=54.10 E-value=60 Score=28.06 Aligned_cols=73 Identities=10% Similarity=0.063 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEecccccc
Q 023592 77 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 77 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 150 (280)
++.+.++++.-.+. ..|=+-++...+..+++. ..++++|+.......- .-..+...|+.+|+.++..+.+..|
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELAL-GAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-CCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 35566666665544 455556677888887763 3477888876654321 2357899999999999987766554
No 68
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=53.96 E-value=1.1e+02 Score=26.76 Aligned_cols=105 Identities=8% Similarity=0.012 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCC-----cHHHHHHHHHHHHHcCCccEEEccCCC---HHHHHHHHH
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-----GYLDALNHLTDLKEEGKIKTVALTNFD---TERLRIILE 107 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~-----~~~~~~~~L~~l~~~Gkir~iGvs~~~---~~~l~~~~~ 107 (280)
.++.+. +..+-+.|.++|+|+|++-+......... .-.+.++.+.++.+ +..+..+++... .+.+..+..
T Consensus 16 ~f~~~~-~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEF-VKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHH-HHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 345444 45566669999999999987654321100 01355555555543 246666665443 455555555
Q ss_pred cCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEe
Q 023592 108 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 144 (280)
Q Consensus 108 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 144 (280)
.+. +.+.+.+..-.-..-.+.+++++++|+.|...
T Consensus 94 ~gv--~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 SVV--DMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCc--CEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 443 33333333211222356889999999876643
No 69
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=53.16 E-value=1.1e+02 Score=27.00 Aligned_cols=100 Identities=9% Similarity=0.043 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEe-cCCCCC-Cc---HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCe
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFH-WWDYSN-PG---YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPV 112 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH-~~~~~~-~~---~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~ 112 (280)
+.+.+.+..++.+ .-|.|.||+=--- +|.... +. +..+...++.+++.-.+ -|.|-++.++.++++++.|.++
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCE
Confidence 5666666666665 4577888875333 243221 11 22366677777765333 4899999999999999976443
Q ss_pred eEeeeeccccccChhhhHHHHHHHhCCeEEEec
Q 023592 113 VSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 113 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 145 (280)
++-+ ..+ .+.++++.+++.|.+++.+.
T Consensus 114 -INDI-~g~----~d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 114 -INDI-RSL----SEPGALEAAAETGLPVCLMH 140 (282)
T ss_pred -EEEC-CCC----CCHHHHHHHHHcCCCEEEEc
Confidence 1111 111 13467888999999999874
No 70
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=52.63 E-value=89 Score=24.13 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=45.8
Q ss_pred CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCC----CcccEEEEecCCCCCCcHHHHHHHHHHHHH
Q 023592 20 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV----PCLDMLQFHWWDYSNPGYLDALNHLTDLKE 85 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~----d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~ 85 (280)
.|=-+.|+-|+|.. .....|++.+.+++..+.. ...|++++-.+.....++.++.+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~A---V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA---VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc---hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 34456677777653 3567788888888876643 568999999987766667888888877765
No 71
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=52.55 E-value=1.6e+02 Score=25.56 Aligned_cols=106 Identities=16% Similarity=0.043 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc--CCCeeE
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVS 114 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~--~~~~~~ 114 (280)
.+++.+.+...+.++ -|.|+||+=. .|. ..+..++..+.+..+.+.-. .-|.+-++.++.++++++. +. .-+
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~-~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~-~iI 96 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYG-GLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGK-CVV 96 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCC-CCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCC-cEE
Confidence 467788888888775 5999999865 232 22212333333333333212 2488889999999999985 42 222
Q ss_pred eeeecccccc-ChhhhHHHHHHHhCCeEEEecccccc
Q 023592 115 NQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 115 ~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl~~G 150 (280)
+..+.... .....+++.+++.|.+++.+..-..|
T Consensus 97 --NsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 97 --NSINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred --EeCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 22232211 12346889999999999987543333
No 72
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=52.52 E-value=87 Score=23.41 Aligned_cols=64 Identities=11% Similarity=0.030 Sum_probs=46.1
Q ss_pred CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCC---CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 20 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~---d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
+|=-+.|+-|+|.. .....|++.+.+.+..... ...|++++-.+.....++.++.+.|..|.+.
T Consensus 38 ~R~GisVsKKvgkA---V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGNA---VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCch---hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 44457777777753 3567777777777776543 4579999998877666688888888888765
No 73
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=52.33 E-value=1.6e+02 Score=25.59 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEE-ecCCCCCCc----HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCC
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQF-HWWDYSNPG----YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIP 111 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~l-H~~~~~~~~----~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~ 111 (280)
.+.+.+.+...+.+ +-|.|+||+=.- -+|...... ++.+...++.+++.-.+. +.+-++.++.++++++.+.+
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 46667766666665 558999998632 234333211 223444566666653443 89999999999999987532
Q ss_pred eeEeeeeccccccChhhhHHHHHHHhCCeEEEec
Q 023592 112 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 112 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~s 145 (280)
+ + +..+..... .++++.++++|.+++.+.
T Consensus 99 i-I--Ndisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 I-I--NDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred E-E--EeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 2 1 222322111 578999999999999954
No 74
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=51.83 E-value=70 Score=28.43 Aligned_cols=73 Identities=11% Similarity=0.099 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEecccccc
Q 023592 77 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 77 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 150 (280)
++.+.+|++...|. ..|=+-++.+.+..+++. ...+++|.....+-.- .-.++..+|+++|+.++..+-+..|
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGG-GAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-CCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 44566677666555 445556677778777774 3367777775553211 1357899999999999987665444
No 75
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=51.63 E-value=96 Score=26.15 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHH----cCCCe
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE----NGIPV 112 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~----~~~~~ 112 (280)
++.+. +..+-+.|.++|+++|++- .|..... -.+.++.+.+.... .+-.+++......++.+++ .+.+.
T Consensus 11 ~~~~~-k~~i~~~L~~~Gv~~iEvg---~~~~~~~-~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 11 FSTEE-KLEIAKALDEAGVDYIEVG---FPFASED-DFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp --HHH-HHHHHHHHHHHTTSEEEEE---HCTSSHH-HHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred cCHHH-HHHHHHHHHHhCCCEEEEc---ccccCHH-HHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCE
Confidence 34444 4455556999999999888 3322222 23455566666666 4455666667777777665 35444
Q ss_pred eEeeeecccccc------------ChhhhHHHHHHHhCCeE
Q 023592 113 VSNQVQHSVVDM------------RPQQKMAELCQLTGVKL 141 (280)
Q Consensus 113 ~~~q~~~n~~~~------------~~~~~~~~~~~~~gi~v 141 (280)
..+-...|.... ..-.+.+.++++.|+.+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 444444443111 11246789999999998
No 76
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=51.17 E-value=1.3e+02 Score=27.58 Aligned_cols=86 Identities=14% Similarity=0.139 Sum_probs=60.0
Q ss_pred CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCH
Q 023592 20 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 99 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~ 99 (280)
...-++|.+|+--.+...+.+.+.+-+.+.++..|....|++.+- ...... ..++++.+.++.+.+.+-.+|.+|-+-
T Consensus 90 ~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vS-Ak~g~g-v~eL~~~l~~~~~~~~v~~vG~~nvGK 167 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVS-AKKGNG-IDELLDKIKKARNKKDVYVVGVTNVGK 167 (360)
T ss_pred CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEec-CCCCCC-HHHHHHHHHHHhCCCeEEEECCCCCCH
Confidence 456788999987533344566777777777777776544665554 333333 688888888887777899999999998
Q ss_pred HHHHHHHH
Q 023592 100 ERLRIILE 107 (280)
Q Consensus 100 ~~l~~~~~ 107 (280)
..+...+.
T Consensus 168 StliN~l~ 175 (360)
T TIGR03597 168 SSLINKLL 175 (360)
T ss_pred HHHHHHHH
Confidence 76665553
No 77
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=51.07 E-value=94 Score=23.67 Aligned_cols=64 Identities=2% Similarity=-0.175 Sum_probs=46.5
Q ss_pred CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCC---cccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 20 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVP---CLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d---~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
+|=-+.|+-|+|.. .....+++-+.++...+..+ -.|++++-.+.....++.++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~A---V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNA---VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccch---hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 45567888888763 24567777777777776653 479999998877665678888888877765
No 78
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=50.11 E-value=1.4e+02 Score=25.89 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCC-----CCCCcHHHHHHHHHHHHHc-CCccEEEcc---CCCHHHHHHHHH
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWD-----YSNPGYLDALNHLTDLKEE-GKIKTVALT---NFDTERLRIILE 107 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~-----~~~~~~~~~~~~L~~l~~~-Gkir~iGvs---~~~~~~l~~~~~ 107 (280)
++.+.. ..+-+.|.++|+++|.+-+..... .... ...-++.++.+++. +.++...+. ......++.+.+
T Consensus 19 ~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~-~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 19 FTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFA-AHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCC-CCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 344444 445556999999999998653211 0001 11234455555443 346666554 334566777776
Q ss_pred cCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEe
Q 023592 108 NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 144 (280)
Q Consensus 108 ~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 144 (280)
.+. +.+.+.+..-+-..-.+.+++++++|+.+...
T Consensus 97 ~g~--~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 LGV--DVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred cCC--CEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 544 34443333322223356889999999876653
No 79
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=49.68 E-value=38 Score=32.35 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=55.5
Q ss_pred CCCCCeEEEeeccCCCC----------------CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHH
Q 023592 19 GHQSSWISLTKWVPPPV----------------KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTD 82 (280)
Q Consensus 19 ~~R~~~~I~tK~~~~~~----------------~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~ 82 (280)
.-+-++||++=+|.... ..+++. .-+|+.+.|+|.+. ++.+++++..++
T Consensus 154 ~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~r-------i~kR~~~g~ld~~~--------~~ldea~~~~~e 218 (546)
T PF01175_consen 154 DLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPSR-------IEKRLEQGYLDEVT--------DDLDEALARAKE 218 (546)
T ss_dssp S-TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HHH-------HHHHHHTTSSSEEE--------SSHHHHHHHHHH
T ss_pred CCcceEEEEecccccccchHHHHHhcCceEEEEEECHHH-------HHHHHhCCCeeEEc--------CCHHHHHHHHHH
Confidence 35678999999885321 224444 44677788988763 237899999999
Q ss_pred HHHcCCccEEEccCCCHHHHHHHHHcCCC--eeEeeeecc
Q 023592 83 LKEEGKIKTVALTNFDTERLRIILENGIP--VVSNQVQHS 120 (280)
Q Consensus 83 l~~~Gkir~iGvs~~~~~~l~~~~~~~~~--~~~~q~~~n 120 (280)
.+++|+...||+-..-.+.++++++.++. +..-|+..|
T Consensus 219 a~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 219 ARAKKEPLSIGLLGNAADLWEELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp HHHTT--EEEEEES-HHHHHHHHHHTT---SEE---SSTT
T ss_pred hhccCCeeEEEEeccHHHHHHHHHHcCCCCCcccCCCccc
Confidence 99999999999998888999999887544 455676654
No 80
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=48.93 E-value=1e+02 Score=23.32 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=45.5
Q ss_pred CCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCC---CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 21 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 21 R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~---d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
|=-+.|+-|++. .......|++.+.+....+.. ...|++++-.+.....++.++.+.|..|.+.
T Consensus 48 R~G~~VsKK~~~--~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK--KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc--chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 333566666553 123567788888888776643 4689999999887766688999999888776
No 81
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=48.71 E-value=47 Score=31.29 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=62.8
Q ss_pred CCCCeEEEeeccCCCCCCC-HHH--------HHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCcc
Q 023592 20 HQSSWISLTKWVPPPVKMT-SSI--------VRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK 90 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~-~~~--------i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir 90 (280)
-+.++++++=+|.....-. ... ++-.-.+.-+||.+.|+|.. ....+|+++..++..+.|+-.
T Consensus 165 L~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~--------a~~ldeAl~~a~~~~~ag~p~ 236 (561)
T COG2987 165 LKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI--------AETLDEALALAEEATAAGEPI 236 (561)
T ss_pred ccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh--------cCCHHHHHHHHHHHHhcCCce
Confidence 4668999988874211000 000 11112233467888998753 233689999999999999999
Q ss_pred EEEccCCCHHHHHHHHHcCCCeeEe--eeecc
Q 023592 91 TVALTNFDTERLRIILENGIPVVSN--QVQHS 120 (280)
Q Consensus 91 ~iGvs~~~~~~l~~~~~~~~~~~~~--q~~~n 120 (280)
.||+-..-.+.+.++++.+++|+++ |+..|
T Consensus 237 SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 237 SIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred EEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 9999998889999999876666654 54433
No 82
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=48.31 E-value=85 Score=27.06 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHhCCCCceeeecccCCCHhHHHHhHhhh
Q 023592 213 AVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 245 (280)
Q Consensus 213 al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~ 245 (280)
.|+++-+.+-...+-.|++ +.++|++.++.+
T Consensus 105 lL~~~A~tgkPvIlSTG~s--tl~EI~~Av~~~ 135 (241)
T PF03102_consen 105 LLEYIAKTGKPVILSTGMS--TLEEIERAVEVL 135 (241)
T ss_dssp HHHHHHTT-S-EEEE-TT----HHHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEECCCC--CHHHHHHHHHHH
Confidence 5667767766666778999 999999999887
No 83
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=48.08 E-value=2e+02 Score=25.66 Aligned_cols=133 Identities=17% Similarity=0.219 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEEecCCCCC-----CcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc--CCC
Q 023592 39 SSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-----PGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN--GIP 111 (280)
Q Consensus 39 ~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~-----~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~--~~~ 111 (280)
.+.+++.|.+-+++.|+|++ +++.....+. +...+.++.|++..+++.-. + .+..+...... +.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~v--Vvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~---~---~aS~~YA~AAl~~g~- 201 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRV--VVVNVASTERYIPVIPGVHDTLEALEKALDENDPE---I---SASMLYAYAALEAGV- 201 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCE--EEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT---H---HHHHHHHHHHHHTTE-
T ss_pred HHHHHHHHHHHHHHhCCCcE--EEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc---C---ChHHHHHHHHHHCCC-
Confidence 46788999999999999854 3443222111 11235788888888876532 1 23333332222 33
Q ss_pred eeEeeeeccccccChhhhHHHHHHHhCCeEEEe---cccccccccccccCCCCCCCCCCCCCCCchhHHHHhhhhccCCc
Q 023592 112 VVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY---GTVMGGLLSEKFLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGW 188 (280)
Q Consensus 112 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~---spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (280)
+-++=++-+.. ....+.+.++++|+.+.+- ++++.|
T Consensus 202 ~fvN~tP~~~a---~~P~l~ela~~~gvpi~GdD~KT~lAAp-------------------------------------- 240 (295)
T PF07994_consen 202 PFVNGTPSNIA---DDPALVELAEEKGVPIAGDDGKTPLAAP-------------------------------------- 240 (295)
T ss_dssp EEEE-SSSTTT---TSHHHHHHHHHHTEEEEESSBS-HHHHH--------------------------------------
T ss_pred CeEeccCcccc---CCHHHHHHHHHcCCCeecchHhhhhhhH--------------------------------------
Confidence 22233333332 1347899999999998752 222222
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC
Q 023592 189 SQFQVLLQTLKRIASKHGVSIPVVAVRYILDQPAV 223 (280)
Q Consensus 189 ~~~~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v 223 (280)
++.+ +-.+.++|.+.|....+-.++|....|.+
T Consensus 241 -lvlD-Lirl~~la~r~g~~Gv~~~ls~ffK~P~~ 273 (295)
T PF07994_consen 241 -LVLD-LIRLAKLALRRGMGGVQEWLSFFFKSPMV 273 (295)
T ss_dssp -HHHH-HHHHHHHHHHTTS-EEHHHHHHHBSS-T-
T ss_pred -HHHH-HHHHHHHHHHcCCCChhHHHHHHhcCCCc
Confidence 2233 35678899999998899999999999974
No 84
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=47.91 E-value=1.7e+02 Score=24.58 Aligned_cols=87 Identities=15% Similarity=0.099 Sum_probs=57.6
Q ss_pred ccEEEEecCCCCCCcHHHHHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHH
Q 023592 58 LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQ 135 (280)
Q Consensus 58 iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~ 135 (280)
.++.++-.|-+..+ ++.+.+|.+...+. ..+=|.++...+..++.. ..++++|+..+.+-.- .-.++..+|+
T Consensus 120 ~~i~~iEeP~~~~d-----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-~~~d~~~~k~~~~GGi~~~~~i~~~a~ 193 (229)
T cd00308 120 YGLAWIEEPCAPDD-----LEGYAALRRRTGIPIAADESVTTVDDALEALEL-GAVDILQIKPTRVGGLTESRRAADLAE 193 (229)
T ss_pred cCCCeEECCCCccC-----HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-CCCCEEecCccccCCHHHHHHHHHHHH
Confidence 45666776644322 35567777777665 445556677777777763 3478888877654321 1257889999
Q ss_pred HhCCeEEEecccccc
Q 023592 136 LTGVKLITYGTVMGG 150 (280)
Q Consensus 136 ~~gi~via~spl~~G 150 (280)
++|+.++..+.+..|
T Consensus 194 ~~gi~~~~~~~~~s~ 208 (229)
T cd00308 194 AFGIRVMVHGTLESS 208 (229)
T ss_pred HcCCEEeecCCCCCH
Confidence 999999998776554
No 85
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=47.85 E-value=1.1e+02 Score=26.73 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHHHhhcCCC--------------------------cccEEEEecCCCCCCc--HHHHHHHHHHHHHcCCc
Q 023592 38 TSSIVRESIDVSRRRMDVP--------------------------CLDMLQFHWWDYSNPG--YLDALNHLTDLKEEGKI 89 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d--------------------------~iDl~~lH~~~~~~~~--~~~~~~~L~~l~~~Gki 89 (280)
+.+. ++.++++|+++|.. ..|+++|..|....+. ..++++.|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 3344 78899999999865 6789999998766552 2579999999999988
Q ss_pred cEEEccCCCHHHHHHHHH
Q 023592 90 KTVALTNFDTERLRIILE 107 (280)
Q Consensus 90 r~iGvs~~~~~~l~~~~~ 107 (280)
.|=+.+|+...+.+..+
T Consensus 191 -tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 191 -TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred -EEEEEeCCcHHhHhhCC
Confidence 57778888877776654
No 86
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=47.63 E-value=1.4e+02 Score=23.90 Aligned_cols=85 Identities=15% Similarity=0.032 Sum_probs=52.9
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeecccccc-----ChhhhHHHHH
Q 023592 61 LQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDM-----RPQQKMAELC 134 (280)
Q Consensus 61 ~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~-----~~~~~~~~~~ 134 (280)
+|+..|.... .+++++..-+=-++.-|++|-|.+.+......+++. .....++-+.|+.-.. ..+.++-+..
T Consensus 2 ~yf~~pG~eN--T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L 79 (186)
T COG1751 2 VYFEKPGKEN--TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKEL 79 (186)
T ss_pred ccccCCcccc--hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHH
Confidence 3445443332 356666555555667789999888888777777775 2223344444443222 2356788999
Q ss_pred HHhCCeEEEeccc
Q 023592 135 QLTGVKLITYGTV 147 (280)
Q Consensus 135 ~~~gi~via~spl 147 (280)
+++|..|+.-|-.
T Consensus 80 ~erGa~v~~~sHa 92 (186)
T COG1751 80 KERGAKVLTQSHA 92 (186)
T ss_pred HHcCceeeeehhh
Confidence 9999988875544
No 87
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=46.27 E-value=2.3e+02 Score=25.70 Aligned_cols=103 Identities=14% Similarity=0.184 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEe---------cCCCCCCcHHHHHHHHHHHHHcCCccEEEcc---CCCHHHH
Q 023592 35 VKMTSSIVRESIDVSRRRMDVPCLDMLQFH---------WWDYSNPGYLDALNHLTDLKEEGKIKTVALT---NFDTERL 102 (280)
Q Consensus 35 ~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH---------~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs---~~~~~~l 102 (280)
+.++.+.+.. +-+.|.+.|+++|.+-+.- .+.. .+ -.+.++.+.+.+ ...+...+. ..+...+
T Consensus 20 ~~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~-~~-~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 20 HQYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFGA-HT-DEEYIEAAAEVV--KQAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCCC-CC-HHHHHHHHHHhC--CCCEEEEEeccCcccHHHH
Confidence 3456565555 4555999999999996321 1111 12 133344443322 334444433 2256778
Q ss_pred HHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEe
Q 023592 103 RIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 144 (280)
Q Consensus 103 ~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 144 (280)
+.+.+.+.+ .+.+..+.-+-....+.+++++++|+.+...
T Consensus 95 ~~a~~~gvd--~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 95 KMAYDAGVR--VVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHcCCC--EEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 777776544 3333333322223457899999999887764
No 88
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=45.62 E-value=1.3e+02 Score=22.73 Aligned_cols=64 Identities=13% Similarity=0.074 Sum_probs=42.4
Q ss_pred CCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCC--CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 21 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 21 R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~--d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
|=-+.|+-|++.. ......|++.+.++...... +-.|++++..+.....++.++.+.|..|.+.
T Consensus 45 R~G~~VsKK~~~~--AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 45 RLGLVVGKKTAKR--AVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred eEEEEEecccCcc--hhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3346666675431 23466777777777764432 3569999999876666677777777777654
No 89
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=44.85 E-value=1.3e+02 Score=29.66 Aligned_cols=96 Identities=8% Similarity=-0.018 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeEee
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQ 116 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~q 116 (280)
+.+.++.+ ..+|.||+=+++......... .+.+...+.+......+..+||- |.+.+.+.++.+ ...++++|
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~-~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~-~~~ld~vQ 84 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVG-NKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSK-KNGIDFVQ 84 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCC-HHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHH-hcCCCEEE
Confidence 34555544 458999999986564333333 23313333333333357789985 777888888877 46689999
Q ss_pred eeccccccChhhhHHHHHHHhCCeEE
Q 023592 117 VQHSVVDMRPQQKMAELCQLTGVKLI 142 (280)
Q Consensus 117 ~~~n~~~~~~~~~~~~~~~~~gi~vi 142 (280)
++-+.- ....+.++..++.++.++
T Consensus 85 LHG~e~--~~~~~~~~~l~~~~~~ii 108 (610)
T PRK13803 85 LHGAES--KAEPAYCQRIYKKSIKKI 108 (610)
T ss_pred ECCCCC--cccHHHHHHhhhcCCcEE
Confidence 986541 111234445555555555
No 90
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=44.79 E-value=1.1e+02 Score=28.32 Aligned_cols=101 Identities=9% Similarity=0.052 Sum_probs=62.6
Q ss_pred CCCCeEEEeeccCC-------------CCCCCHHHHHHHHHHHHhhcCC-------------CcccEEEEecCCCCCCcH
Q 023592 20 HQSSWISLTKWVPP-------------PVKMTSSIVRESIDVSRRRMDV-------------PCLDMLQFHWWDYSNPGY 73 (280)
Q Consensus 20 ~R~~~~I~tK~~~~-------------~~~~~~~~i~~~i~~SL~~L~~-------------d~iDl~~lH~~~~~~~~~ 73 (280)
.|..+.|+|-+|-. ....++..|..|+....+.|+. ..|.=+.+-........+
T Consensus 105 ~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Ny 184 (371)
T PRK14461 105 DRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANY 184 (371)
T ss_pred CCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhH
Confidence 58889999999821 2356899999999887766632 224433333332222335
Q ss_pred HHHHHHHHHHHHc-CC---ccEEEccCCCH-HHHHHHHHcCCCeeEeeeeccc
Q 023592 74 LDALNHLTDLKEE-GK---IKTVALTNFDT-ERLRIILENGIPVVSNQVQHSV 121 (280)
Q Consensus 74 ~~~~~~L~~l~~~-Gk---ir~iGvs~~~~-~~l~~~~~~~~~~~~~q~~~n~ 121 (280)
+.++++++-+.+. |. -|+|-||+.+. ..+.++.+. ....-+.+..|.
T Consensus 185 dnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~-~~~v~LAiSLHA 236 (371)
T PRK14461 185 DRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANE-RLPINLAISLHA 236 (371)
T ss_pred HHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhc-ccCceEEEEeCC
Confidence 7899999998765 21 46788888775 456666552 223334444443
No 91
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=43.80 E-value=2.3e+02 Score=25.39 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCC-CCCcHHHHHHHHHHHHHcCCccEEEccCCCHHH----HHHHHHc----
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFDTER----LRIILEN---- 108 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~-~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~----l~~~~~~---- 108 (280)
+...+.+-++...+ ..++..+-+|.-.+ ..+ ..-.-+.++.|++.|+.-+||+-...+.. ..++++.
T Consensus 151 ~~~~L~~ll~~l~~---i~~v~~iri~Tr~~v~~p-~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~ 226 (321)
T TIGR03822 151 SPRRLGDIMARLAA---IDHVKIVRFHTRVPVADP-ARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDA 226 (321)
T ss_pred CHHHHHHHHHHHHh---CCCccEEEEeCCCcccCh-hhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHc
Confidence 34555555555443 34666677774211 111 11112445667777865567766544332 3333332
Q ss_pred CCCeeEeeeeccc-cccCh--hhhHHHHHHHhCCeEE
Q 023592 109 GIPVVSNQVQHSV-VDMRP--QQKMAELCQLTGVKLI 142 (280)
Q Consensus 109 ~~~~~~~q~~~n~-~~~~~--~~~~~~~~~~~gi~vi 142 (280)
|+ ...+|.-..- .+.+. -.++++++.+.|+.-.
T Consensus 227 Gi-~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~py 262 (321)
T TIGR03822 227 GI-PMVSQSVLLRGVNDDPETLAALMRAFVECRIKPY 262 (321)
T ss_pred CC-EEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeE
Confidence 43 3445544321 12222 2467888888887633
No 92
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.94 E-value=1.3e+02 Score=27.51 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=60.0
Q ss_pred CCCCeEEEeeccCC-------------CCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 20 HQSSWISLTKWVPP-------------PVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 20 ~R~~~~I~tK~~~~-------------~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
.|..++|+|-+|-. ....+.+.|..++...-+. +.++-+.+-.........+++++++..++++
T Consensus 101 ~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~ 177 (345)
T PRK14466 101 DRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAP 177 (345)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhc
Confidence 57889999988721 1236888999888866322 2344444443211123357899999999877
Q ss_pred CCc----cEEEccCCCHH-HHHHHHHcCCCeeEeeeeccc
Q 023592 87 GKI----KTVALTNFDTE-RLRIILENGIPVVSNQVQHSV 121 (280)
Q Consensus 87 Gki----r~iGvs~~~~~-~l~~~~~~~~~~~~~q~~~n~ 121 (280)
.-. |.|-||+.+.. .+.++... .+ ..+.+.+|.
T Consensus 178 ~g~~~s~r~ItVsT~G~~~~i~~l~~~-~~-~~LavSLha 215 (345)
T PRK14466 178 YGYGWSPKRITVSTVGLKKGLKRFLEE-SE-CHLAISLHS 215 (345)
T ss_pred cccCcCCceEEEEcCCCchHHHHHhhc-cC-cEEEEEcCC
Confidence 444 68889988864 36665552 22 344555553
No 93
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=42.56 E-value=79 Score=28.05 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=53.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhhc--------C--CCCHHHHHHHHHHHhcCC
Q 023592 196 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM--------L--SLDEDDVNSIQEVTKKGK 265 (280)
Q Consensus 196 ~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~~--------~--~Lt~e~~~~l~~~~~~~~ 265 (280)
+...+++++++....---+.=++..+.|..+++.+. +..|.+-.+++++ . -+|.+|.++|-++.++..
T Consensus 41 ~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~ 118 (342)
T COG0673 41 ERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAG 118 (342)
T ss_pred HHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence 668889999998722223666788888888888888 8888888887765 2 467899999988887764
Q ss_pred CCc
Q 023592 266 DLL 268 (280)
Q Consensus 266 ~~~ 268 (280)
...
T Consensus 119 ~~l 121 (342)
T COG0673 119 VKL 121 (342)
T ss_pred Cce
Confidence 444
No 94
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=42.31 E-value=36 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Q 023592 196 QTLKRIASKHGVSIPVVAVRYILD 219 (280)
Q Consensus 196 ~~l~~la~~~~~s~~q~al~~~l~ 219 (280)
.-+.+||+.+|.++.++|..|+.-
T Consensus 14 ~~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 14 LSFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHH
Confidence 357899999999999999999853
No 95
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=41.85 E-value=1.5e+02 Score=22.38 Aligned_cols=62 Identities=8% Similarity=-0.004 Sum_probs=45.2
Q ss_pred CCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCC------cccEEEEecCCCCCCcHHHHHHHHHHHH
Q 023592 21 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVP------CLDMLQFHWWDYSNPGYLDALNHLTDLK 84 (280)
Q Consensus 21 R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d------~iDl~~lH~~~~~~~~~~~~~~~L~~l~ 84 (280)
|=-+.|+-|++.. ......+++.+.++......+ -.|++++-.+.....++.++.+.|+.|.
T Consensus 47 RlG~sVSKKv~~k--AV~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKK--AVVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCc--hhhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 5568888886531 235678888888888887542 5799999998776666777777777664
No 96
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=41.80 E-value=89 Score=26.21 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCC-CHHHHHHHHHcCCCeeEee
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 116 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~q 116 (280)
+++...+ +-+.|-.-|+..+-+=+ .. .+.++.+++++++..=-.+|..+- +.++++.+++.+.+|.
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~------~t---~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi--- 84 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL------RT---PVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI--- 84 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC------CC---ccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE---
Confidence 3444443 44556666766554433 22 235556667766543356887754 5688888988776555
Q ss_pred eeccccccChhhhHHHHHHHhCCeEEE
Q 023592 117 VQHSVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 117 ~~~n~~~~~~~~~~~~~~~~~gi~via 143 (280)
.++ ....+++++|+++||.+++
T Consensus 85 --vsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 85 --VSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred --ECC---CCCHHHHHHHHHcCCcEEC
Confidence 222 2245899999999999886
No 97
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=41.55 E-value=2.3e+02 Score=24.38 Aligned_cols=99 Identities=8% Similarity=0.022 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc-CCccEEEccCCCHHHHHHHHHcCCCeeE
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILENGIPVVS 114 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 114 (280)
.++.+.. ..+-+.|.++|+++|++-+ |.. . +.-++.++.+.+. ..++..+.+....+.++.+.+.+.+...
T Consensus 16 ~~~~~~k-~~i~~~L~~~Gv~~iE~g~---p~~--~--~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~ 87 (259)
T cd07939 16 AFSREEK-LAIARALDEAGVDEIEVGI---PAM--G--EEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVH 87 (259)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEEec---CCC--C--HHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEE
Confidence 3454444 4455569999999999852 221 1 2234566666663 3477777777778888888876544333
Q ss_pred eeeeccccc------cCh------hhhHHHHHHHhCCeEE
Q 023592 115 NQVQHSVVD------MRP------QQKMAELCQLTGVKLI 142 (280)
Q Consensus 115 ~q~~~n~~~------~~~------~~~~~~~~~~~gi~vi 142 (280)
+-+..|..+ +.. -.+.+++|++.|+.|.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 322222211 111 1357889999998665
No 98
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=41.26 E-value=81 Score=25.56 Aligned_cols=95 Identities=22% Similarity=0.281 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhcCCCc----ccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CC--CeeE
Q 023592 42 VRESIDVSRRRMDVPC----LDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI--PVVS 114 (280)
Q Consensus 42 i~~~i~~SL~~L~~d~----iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~--~~~~ 114 (280)
.+..++..++.+|.+. ++.+.-.+.. ... +.++.+.|+.|++.| ++-.-+||.+...+...++. +. .|+.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~-~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~gl~~~fd~ 137 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAYLR-LPP-HPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHAGLDDPFDA 137 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCC-CCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHCCChhhhhe
Confidence 3566777778887652 1111111111 112 456778899999988 45555777777777766664 33 2443
Q ss_pred eeeeccccccChhhhHH-HHHHHhCC
Q 023592 115 NQVQHSVVDMRPQQKMA-ELCQLTGV 139 (280)
Q Consensus 115 ~q~~~n~~~~~~~~~~~-~~~~~~gi 139 (280)
+-..-..-...+..+++ ..+++.|+
T Consensus 138 i~~s~~~~~~KP~~~~~~~~~~~~~~ 163 (198)
T TIGR01428 138 VLSADAVRAYKPAPQVYQLALEALGV 163 (198)
T ss_pred eEehhhcCCCCCCHHHHHHHHHHhCC
Confidence 33322222234444444 44455564
No 99
>PRK07945 hypothetical protein; Provisional
Probab=41.00 E-value=2.8e+02 Score=25.12 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=48.0
Q ss_pred CCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccC---------------CCHHHHHHH-HHcCCCeeEeeee
Q 023592 55 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------------FDTERLRII-LENGIPVVSNQVQ 118 (280)
Q Consensus 55 ~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~---------------~~~~~l~~~-~~~~~~~~~~q~~ 118 (280)
.||+ +..+|+.... + ..+..+.+.++.+.+.+.-+|=-. +..+.+.++ .+.+..+.++-..
T Consensus 191 ~D~v-IgSvH~~~~~-~-~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~~lEINt~~ 267 (335)
T PRK07945 191 LDVV-VASVHSKLRM-D-AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGTAVEINSRP 267 (335)
T ss_pred CCEE-EEEeecCCCC-C-HHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCCEEEEeCCC
Confidence 4666 7778875332 2 356678888888888888887321 112222233 2324434444322
Q ss_pred ccccccChhhhHHHHHHHhCCeEE
Q 023592 119 HSVVDMRPQQKMAELCQLTGVKLI 142 (280)
Q Consensus 119 ~n~~~~~~~~~~~~~~~~~gi~vi 142 (280)
+...+...++..|++.|+.++
T Consensus 268 ---~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 268 ---ERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred ---CCCCChHHHHHHHHHcCCeEE
Confidence 223455679999999998764
No 100
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=40.74 E-value=1.2e+02 Score=28.70 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=22.6
Q ss_pred HHHcCCCHHHHHHHHHHhCC-CCceeeec
Q 023592 202 ASKHGVSIPVVAVRYILDQP-AVAGSMIG 229 (280)
Q Consensus 202 a~~~~~s~~q~al~~~l~~~-~v~~~i~G 229 (280)
|..||.|...-.|+|+++.. --+++++|
T Consensus 113 aGTHGKTTTTsmla~vl~~~gldPtf~iG 141 (459)
T COG0773 113 AGTHGKTTTTSMLAWVLEAAGLDPTFLIG 141 (459)
T ss_pred eCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence 45689999999999999986 45567777
No 101
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=40.68 E-value=72 Score=24.33 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhh
Q 023592 206 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 245 (280)
Q Consensus 206 ~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~ 245 (280)
..|=.+.||.++...+.-..++.|+..++.+|.-.|+..+
T Consensus 69 D~TD~e~Al~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l 108 (123)
T PF04263_consen 69 DYTDLEKALEYAIEQGPDEIIVLGALGGRFDHTLANLNLL 108 (123)
T ss_dssp TS-HHHHHHHHHHHTTTSEEEEES-SSSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHHHHH
Confidence 3467789999999999888899999999999999998765
No 102
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=40.19 E-value=56 Score=25.28 Aligned_cols=44 Identities=11% Similarity=0.055 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 43 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 43 ~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
+..+.+.|+.+....+|.++++..+.-.....+++..++.|.+.
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 34444444445455556655555444333334445555555544
No 103
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=40.02 E-value=2.9e+02 Score=25.03 Aligned_cols=102 Identities=12% Similarity=0.211 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEE--------ec-CCCCCCcHHHHHHHHHHHHHcCCccEEEccC---CCHHHHH
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQF--------HW-WDYSNPGYLDALNHLTDLKEEGKIKTVALTN---FDTERLR 103 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~l--------H~-~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~---~~~~~l~ 103 (280)
.++.+.+. .+-+.|.+.|+++|.+-+. .. +.. .+++ +.++.+.+..+. .+...+.. .+.+.++
T Consensus 20 ~f~~~~~~-~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~~-e~i~~~~~~~~~--~~~~~ll~pg~~~~~dl~ 94 (333)
T TIGR03217 20 QFTIEQVR-AIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTDL-EYIEAAADVVKR--AKVAVLLLPGIGTVHDLK 94 (333)
T ss_pred cCCHHHHH-HHHHHHHHcCCCEEEEecCCCCCCccccCCCCC-CChH-HHHHHHHHhCCC--CEEEEEeccCccCHHHHH
Confidence 45655554 4555699999999999622 11 211 2212 333333333333 33332322 2567788
Q ss_pred HHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEe
Q 023592 104 IILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 144 (280)
Q Consensus 104 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 144 (280)
.+.+.+. +.+.+..+.-+-....+.++++++.|+.+...
T Consensus 95 ~a~~~gv--d~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 95 AAYDAGA--RTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHHHCCC--CEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 8877654 34444443322223457899999999877643
No 104
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=40.01 E-value=2.8e+02 Score=24.87 Aligned_cols=107 Identities=7% Similarity=0.029 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccC---------CCHHHHHHHHHcCC
Q 023592 40 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN---------FDTERLRIILENGI 110 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~---------~~~~~l~~~~~~~~ 110 (280)
+.+.+.++..-+..+ |.-+.|-.-++.......+.+.++.+++-|.+..+.+.+ .+.+.+..+.+.+.
T Consensus 122 ~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~ 198 (321)
T TIGR03822 122 AELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGK 198 (321)
T ss_pred HHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCC
Confidence 444444443333322 333445544444332356777888888888776555543 23344444444442
Q ss_pred CeeEeeeeccccc--cChhhhHHHHHHHhCCeEEEecccccc
Q 023592 111 PVVSNQVQHSVVD--MRPQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 111 ~~~~~q~~~n~~~--~~~~~~~~~~~~~~gi~via~spl~~G 150 (280)
...+-++.|-.. .......+..+++.||.+...+++..|
T Consensus 199 -~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~g 239 (321)
T TIGR03822 199 -TVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRG 239 (321)
T ss_pred -cEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCC
Confidence 233444444211 011235678888999999999998777
No 105
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=39.82 E-value=1.3e+02 Score=25.05 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=54.6
Q ss_pred CcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeecc-ccccChhhhHHHHH
Q 023592 56 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHS-VVDMRPQQKMAELC 134 (280)
Q Consensus 56 d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~ 134 (280)
.-..+..+.+.. .. ....+|.+.|-. .+-..-.+.+.+.++++ +.+..++-+... ...-.....+++.|
T Consensus 21 ~~~~V~~l~R~~-----~~---~~~~~l~~~g~~-vv~~d~~~~~~l~~al~-g~d~v~~~~~~~~~~~~~~~~~li~Aa 90 (233)
T PF05368_consen 21 AGFSVRALVRDP-----SS---DRAQQLQALGAE-VVEADYDDPESLVAALK-GVDAVFSVTPPSHPSELEQQKNLIDAA 90 (233)
T ss_dssp TTGCEEEEESSS-----HH---HHHHHHHHTTTE-EEES-TT-HHHHHHHHT-TCSEEEEESSCSCCCHHHHHHHHHHHH
T ss_pred CCCCcEEEEecc-----ch---hhhhhhhcccce-EeecccCCHHHHHHHHc-CCceEEeecCcchhhhhhhhhhHHHhh
Confidence 446677777743 12 234566677764 56666667888988888 666555555533 21122346799999
Q ss_pred HHhCCeEEEecccccc
Q 023592 135 QLTGVKLITYGTVMGG 150 (280)
Q Consensus 135 ~~~gi~via~spl~~G 150 (280)
++.||..+.++-++..
T Consensus 91 ~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 91 KAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHT-SEEEESEESSG
T ss_pred hccccceEEEEEeccc
Confidence 9999999999888665
No 106
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=39.50 E-value=3.6e+02 Score=26.03 Aligned_cols=83 Identities=16% Similarity=0.226 Sum_probs=43.2
Q ss_pred CCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcH---HHHHHHHHH-HH-----------Hc
Q 023592 22 SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGY---LDALNHLTD-LK-----------EE 86 (280)
Q Consensus 22 ~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~---~~~~~~L~~-l~-----------~~ 86 (280)
+-++|.|-+. ++-|-..++...+.++. -++++.++.+....... ..+++.+-+ +. +.
T Consensus 87 ~~I~V~sTC~-------seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~~al~~lv~~~~~~~~~~~~~~~~~ 158 (519)
T PRK02910 87 DLIVVGPSCT-------AELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAADETFYQLVRALAKKAAELPQPKTAR 158 (519)
T ss_pred CEEEEeCCcH-------HHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 3456666664 24444445555555554 36799999886554322 223222221 11 23
Q ss_pred CCccEEEccCC------CHHHHHHHHHc-CCCe
Q 023592 87 GKIKTVALTNF------DTERLRIILEN-GIPV 112 (280)
Q Consensus 87 Gkir~iGvs~~------~~~~l~~~~~~-~~~~ 112 (280)
+.|.-||.++. +...+..+++. |+++
T Consensus 159 ~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~v 191 (519)
T PRK02910 159 PSVNLLGPTALGFHHRDDLTELRRLLATLGIDV 191 (519)
T ss_pred CeEEEEecCccCCCChhHHHHHHHHHHHcCCeE
Confidence 56888887642 23455555553 4443
No 107
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=39.37 E-value=1.7e+02 Score=26.60 Aligned_cols=70 Identities=14% Similarity=0.085 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEeccc
Q 023592 77 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 77 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl 147 (280)
++.+.+|++...+. ..|=|.++...+..++.. .-++++|.....+..- .-.++.+.|+.+|+.++.++..
T Consensus 203 ~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 203 QEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-RLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-CCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 56777888887665 777788888999999885 3478888887654321 1357899999999999976543
No 108
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=39.25 E-value=2.7e+02 Score=27.26 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=73.3
Q ss_pred CCCHHHHHHHHHHHHhhcCC---CcccEEEEe-----cC----------------------CCCCCcHHHHHHHHHHHHH
Q 023592 36 KMTSSIVRESIDVSRRRMDV---PCLDMLQFH-----WW----------------------DYSNPGYLDALNHLTDLKE 85 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~---d~iDl~~lH-----~~----------------------~~~~~~~~~~~~~L~~l~~ 85 (280)
.++++-+.+.+++.-..|.. -.+..+++. +- ....+..+++.+-+++|-.
T Consensus 69 q~t~e~~~~~i~ql~~~lepG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~ 148 (717)
T COG4981 69 QVTEEIFTNAIEQLVSLLEPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGD 148 (717)
T ss_pred ccCHHHHHHHHHHHHhccCCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhh
Confidence 46889999999998777753 344555544 21 1234446778888888888
Q ss_pred cCCccEEEccCCCHHHHHHHHHc----CCCeeEeeeecccccc--C---hhhhHH---HHHH-HhCCeEEEeccccc
Q 023592 86 EGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDM--R---PQQKMA---ELCQ-LTGVKLITYGTVMG 149 (280)
Q Consensus 86 ~Gkir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~--~---~~~~~~---~~~~-~~gi~via~spl~~ 149 (280)
.| +.|+++-.-+.+++...+++ ...|.++|++=.-.-. . .+.-++ ...| ..||.++.-+-++.
T Consensus 149 ~G-~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR~~~NIvl~vGgGiGt 224 (717)
T COG4981 149 DG-FPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGT 224 (717)
T ss_pred cC-ceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccchhhcccHHHHHHHHHhcCCCEEEEecCCcCC
Confidence 87 57999999999999888876 3457888887543321 1 122232 2333 33788887665543
No 109
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=38.67 E-value=2e+02 Score=24.55 Aligned_cols=89 Identities=10% Similarity=0.024 Sum_probs=51.8
Q ss_pred CCCeEEEeeccC--CCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEE---Ecc
Q 023592 21 QSSWISLTKWVP--PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTV---ALT 95 (280)
Q Consensus 21 R~~~~I~tK~~~--~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~i---Gvs 95 (280)
.-+++|...++. ..+++.++.+..-+.+..+--++...-|.-+--++.+.......+..|.+|+++.+-+++ .+|
T Consensus 119 ~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L~l~GLM~ipp~~~d~~~~~~~F~~l~~l~~~l~~~~~~~~~LS 198 (228)
T COG0325 119 PLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNLELRGLMTIPPLTDDPEEIFAVFRKLRKLFDELKAKYPPIDELS 198 (228)
T ss_pred CceEEEEEecCCccccCCCCHHHHHHHHHHHHhCCCCeEeEEEeeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCeec
Confidence 567899988875 345677888888877776544444444444443333322234566666666666555433 333
Q ss_pred CCCHHHHHHHHHcC
Q 023592 96 NFDTERLRIILENG 109 (280)
Q Consensus 96 ~~~~~~l~~~~~~~ 109 (280)
--....++.+++.|
T Consensus 199 MGMS~D~e~AI~~G 212 (228)
T COG0325 199 MGMSNDYEIAIAEG 212 (228)
T ss_pred CcCcccHHHHHHcC
Confidence 33445666676654
No 110
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=38.35 E-value=50 Score=26.25 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhhcCCCCHHHHHHHHHH
Q 023592 196 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 260 (280)
Q Consensus 196 ~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~ 260 (280)
+.+.+.-.+.|.|..++|=.=-++.-.+++++.|-.+.++++.....+.++ |+.+....|...
T Consensus 11 ~~Ll~AK~~KGLTwe~IAe~iG~sevwvaaa~lGQ~~ls~e~A~kla~lLg--L~~e~~~~l~~~ 73 (150)
T TIGR00673 11 DALLESKKKKGLTFADIADGLGLAEVFVAAALYGQAAAPADEARLVGAKLD--LDEDSILELQMA 73 (150)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHhCCCCCCHHHHHHHHHHhC--cCHHHHHHHhcC
Confidence 556666666777777777666666666667777777668888888888775 998887777643
No 111
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=38.10 E-value=3.1e+02 Score=25.08 Aligned_cols=76 Identities=18% Similarity=0.177 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEcc-------CCCHHHHHHHHHc--CCCeeEeeeeccccccCh--------hhhHHHHHH
Q 023592 73 YLDALNHLTDLKEEGKIKTVALT-------NFDTERLRIILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQ 135 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs-------~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~--------~~~~~~~~~ 135 (280)
.++++++.+...+... +.|-+- |.+.++..++.+. +.+..++-++||+..... ...+.+...
T Consensus 238 ~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~ 316 (349)
T COG0820 238 IEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILK 316 (349)
T ss_pred HHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHH
Confidence 5678888888886655 544432 5557777777765 566699999999976432 234666677
Q ss_pred HhCCeEEEeccccc
Q 023592 136 LTGVKLITYGTVMG 149 (280)
Q Consensus 136 ~~gi~via~spl~~ 149 (280)
++||.+....+-+.
T Consensus 317 ~~gv~~tvR~~~g~ 330 (349)
T COG0820 317 KAGVLVTVRKTRGD 330 (349)
T ss_pred hCCeeEEecccccc
Confidence 78899888776544
No 112
>TIGR00035 asp_race aspartate racemase.
Probab=37.97 E-value=2.3e+02 Score=23.89 Aligned_cols=69 Identities=7% Similarity=0.050 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCC-----------cHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHH
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-----------GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 106 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~-----------~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 106 (280)
+.+.+++-++..-.+.+-+|++++.+++|+.... ....+.+.++.|.+. .+..|.++..+.....+.+
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~-g~d~iviaCNTah~~~~~l 93 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENA-GADFIIMPCNTAHKFAEDI 93 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHc-CCCEEEECCccHHHHHHHH
Confidence 4566777777777788899999999999853211 123466777777665 4799999988877654444
Q ss_pred H
Q 023592 107 E 107 (280)
Q Consensus 107 ~ 107 (280)
+
T Consensus 94 ~ 94 (229)
T TIGR00035 94 Q 94 (229)
T ss_pred H
Confidence 4
No 113
>PRK10200 putative racemase; Provisional
Probab=37.86 E-value=1.9e+02 Score=24.47 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCC-----------cHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHH
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNP-----------GYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 106 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~-----------~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 106 (280)
+.+.+++-++..-.+.+.++++.+.+|.++.... ....+.+.++.|.+.| +..|.+...+.....+.+
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~~l 93 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVADAI 93 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHHHH
Confidence 4566777777777888889999999998742211 1345677788887776 799999988876655555
Q ss_pred H
Q 023592 107 E 107 (280)
Q Consensus 107 ~ 107 (280)
+
T Consensus 94 ~ 94 (230)
T PRK10200 94 E 94 (230)
T ss_pred H
Confidence 4
No 114
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=37.81 E-value=2.7e+02 Score=24.20 Aligned_cols=98 Identities=14% Similarity=0.235 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEec-CC-----CCCCcHHHHHHHHHHHHHc-CCccEEEccCCC--------H-H
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHW-WD-----YSNPGYLDALNHLTDLKEE-GKIKTVALTNFD--------T-E 100 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~-~~-----~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~--------~-~ 100 (280)
.++..++..+... ..+|++. ++.|-. +. .....+....+-++.+++. |. -+||+..+. . .
T Consensus 70 ~n~~~l~~~L~~~-~~~Gi~n--vL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~ 145 (272)
T TIGR00676 70 ATREEIREILREY-RELGIRH--ILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEE 145 (272)
T ss_pred CCHHHHHHHHHHH-HHCCCCE--EEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHH
Confidence 4566677766644 6676443 232332 21 1111133455555555554 43 478877642 1 2
Q ss_pred HHHHHHH---cCCCeeEeeeeccccccChhhhHHHHHHHhCCeE
Q 023592 101 RLRIILE---NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 141 (280)
Q Consensus 101 ~l~~~~~---~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 141 (280)
++..+.+ .|..+.+-|.-|+. ..-.++++.|++.|+.+
T Consensus 146 ~~~~L~~K~~aGA~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 146 DIENLKRKVDAGADYAITQLFFDN---DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred HHHHHHHHHHcCCCeEeeccccCH---HHHHHHHHHHHHcCCCC
Confidence 3333333 37778899998887 33357888999997764
No 115
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=37.80 E-value=2.4e+02 Score=25.84 Aligned_cols=102 Identities=8% Similarity=0.133 Sum_probs=65.1
Q ss_pred CCCCeEEEeeccCC-------------CCCCCHHHHHHHHHHHHhhcCCC---cccEEEEecCCCCCCcHHHHHHHHHHH
Q 023592 20 HQSSWISLTKWVPP-------------PVKMTSSIVRESIDVSRRRMDVP---CLDMLQFHWWDYSNPGYLDALNHLTDL 83 (280)
Q Consensus 20 ~R~~~~I~tK~~~~-------------~~~~~~~~i~~~i~~SL~~L~~d---~iDl~~lH~~~~~~~~~~~~~~~L~~l 83 (280)
.|..+.|+|-+|-. ....+...|..|+....+.++.. .+.=+.+-........++.+..+++-+
T Consensus 99 ~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~ 178 (349)
T COG0820 99 DRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEII 178 (349)
T ss_pred CCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhh
Confidence 67788999998831 13568899999999999999874 344444433322222256778888777
Q ss_pred HHc-----CCccEEEccCCC-HHHHHHHHHcCCCeeEeeeeccccc
Q 023592 84 KEE-----GKIKTVALTNFD-TERLRIILENGIPVVSNQVQHSVVD 123 (280)
Q Consensus 84 ~~~-----Gkir~iGvs~~~-~~~l~~~~~~~~~~~~~q~~~n~~~ 123 (280)
..+ |+ |+|-+|+.+ ...+.++.+... -+..++..|..+
T Consensus 179 ~~~~G~~ls~-R~iTvSTsGi~~~I~~l~~~~~-~v~LAiSLHa~n 222 (349)
T COG0820 179 NDDEGLGLSK-RRITVSTSGIVPRIRKLADEQL-GVALAISLHAPN 222 (349)
T ss_pred cCcccccccc-eEEEEecCCCchhHHHHHhhcC-CeEEEEecCCCC
Confidence 743 33 778888877 456666664211 344566666543
No 116
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.77 E-value=1e+02 Score=25.74 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCC-CHHHHHHHHHcCCCeeEee
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQ 116 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~q 116 (280)
+++...+.++ .|-+-|+..+.+=+ ..+ +.++.+++++++..=-.||..+- +.++++++++.+.+|.+
T Consensus 14 ~~~~a~~ia~-al~~gGi~~iEit~------~tp---~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~Fiv-- 81 (201)
T PRK06015 14 DVEHAVPLAR-ALAAGGLPAIEITL------RTP---AALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIV-- 81 (201)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC------CCc---cHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEE--
Confidence 4455544443 44555665544332 222 34556666665543356887754 56888888887765543
Q ss_pred eeccccccChhhhHHHHHHHhCCeEEE
Q 023592 117 VQHSVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 117 ~~~n~~~~~~~~~~~~~~~~~gi~via 143 (280)
++ ....+++++|+++||.+++
T Consensus 82 ---SP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 ---SP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred ---CC---CCCHHHHHHHHHcCCCEeC
Confidence 22 2346899999999999985
No 117
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=37.67 E-value=3.1e+02 Score=24.71 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=23.4
Q ss_pred eecccCCCHhHHHHhHhhhcC-CCCHHHHHHHH
Q 023592 227 MIGVRLGLAEHIQDTNAIFML-SLDEDDVNSIQ 258 (280)
Q Consensus 227 i~G~~~~~~~~l~~nl~a~~~-~Lt~e~~~~l~ 258 (280)
..|.. ++..+...++++.. -+++++++.|-
T Consensus 269 p~gle--d~~~l~~l~~~L~~~G~~e~~i~~i~ 299 (313)
T COG2355 269 PDGLE--DVGKLPNLTAALIERGYSEEEIEKIA 299 (313)
T ss_pred chhhc--ChhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 45777 88888888888866 49999977664
No 118
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=37.45 E-value=2.9e+02 Score=24.32 Aligned_cols=98 Identities=15% Similarity=0.307 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCC---------CCCcHHHHHHHHHHHHHc-CCccEEEccCCC--------
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY---------SNPGYLDALNHLTDLKEE-GKIKTVALTNFD-------- 98 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~---------~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~-------- 98 (280)
.+...++..+.+. ..+|++. ++.|-. |+ ....+....+-++.+++. |.--.||+..+.
T Consensus 71 ~~~~~l~~~L~~~-~~~Gi~n--iLal~G-D~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~ 146 (281)
T TIGR00677 71 MPIEMIDDALERA-YSNGIQN--ILALRG-DPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAES 146 (281)
T ss_pred CCHHHHHHHHHHH-HHCCCCE--EEEECC-CCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCC
Confidence 3555565555554 6667543 233332 11 111233455566666664 443589988773
Q ss_pred HH-HHHHHHH---cCCCeeEeeeeccccccChhhhHHHHHHHhCCeE
Q 023592 99 TE-RLRIILE---NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKL 141 (280)
Q Consensus 99 ~~-~l~~~~~---~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v 141 (280)
.+ ++..+.+ .|..+.+-|.-|+. ..-.++++.|++.|+.+
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~~ 190 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQLFYDV---DNFLKFVNDCRAIGIDC 190 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccceecH---HHHHHHHHHHHHcCCCC
Confidence 11 2333332 37789999998886 22347888899987654
No 119
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=37.41 E-value=1.3e+02 Score=30.05 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=70.0
Q ss_pred HHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccC---hhhhHHHHHHHhCCeEEEeccccccccccc
Q 023592 80 LTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMR---PQQKMAELCQLTGVKLITYGTVMGGLLSEK 155 (280)
Q Consensus 80 L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~---~~~~~~~~~~~~gi~via~spl~~G~L~~~ 155 (280)
++.+....++-.+-=++.+.+.+.++.+. .-++.-+.+ +|-+|.. .+..+.++|++-++-++.-++-.+
T Consensus 147 ~~~~~~~~~~~~~~QTT~~~~~~~~~~~~l~~~~~~~~~-~~tiC~at~~Rq~a~~~la~~~d~~~vvGg~~Ss------ 219 (647)
T PRK00087 147 AEKLPFDKKICVVSQTTEKQENFEKVLKELKKKGKEVKV-FNTICNATEVRQEAAEKLAKKVDVMIVVGGKNSS------ 219 (647)
T ss_pred HhhCCCCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCccc-CCCcchhhhhHHHHHHHHHhhCCEEEEECCCCCc------
Confidence 34443344555555556666666665553 111111111 4544433 245688888877777765322110
Q ss_pred ccCCCCCCCCCCCCCCCchhHHHHhhhhccCCchhHHHHHHHHHHHHHHcCC------CHHHHHHHHHHhCCCCceeeec
Q 023592 156 FLDTNLSIPFAGPPLNTPSLQKYKRMVDAWGGWSQFQVLLQTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIG 229 (280)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~q~al~~~l~~~~v~~~i~G 229 (280)
+ ...|.++|++.|. ++.++.-.|+..... ..+..|
T Consensus 220 ---N-----------------------------------t~~L~~i~~~~~~~~~~ie~~~el~~~~~~~~~~-vgitag 260 (647)
T PRK00087 220 ---N-----------------------------------TTKLYEICKSNCTNTIHIENAGELPEEWFKGVKI-IGVTAG 260 (647)
T ss_pred ---c-----------------------------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEec
Confidence 0 2678888888764 788999999877655 457899
Q ss_pred ccCCCHhHHHHh-Hhhh
Q 023592 230 VRLGLAEHIQDT-NAIF 245 (280)
Q Consensus 230 ~~~~~~~~l~~n-l~a~ 245 (280)
+| +|+.+-+. +..+
T Consensus 261 aS--tP~~~i~~v~~~l 275 (647)
T PRK00087 261 AS--TPDWIIEEVIKKM 275 (647)
T ss_pred cC--CCHHHHHHHHHHH
Confidence 99 99986544 3444
No 120
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=37.30 E-value=3.2e+02 Score=24.77 Aligned_cols=75 Identities=11% Similarity=0.008 Sum_probs=57.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc
Q 023592 33 PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 108 (280)
Q Consensus 33 ~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~ 108 (280)
+..+++.+...+-.+-+.+-.++++|=|=.+.......++..+++++.+.|+++|..-. =+++-++...+++.+.
T Consensus 143 Tag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~-~yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 143 TAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVM-VYCSDDPIAAKRLEDA 217 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHhc
Confidence 33566888888888889999999999999888777667778999999999999998642 3444456555555553
No 121
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.05 E-value=2.2e+02 Score=25.89 Aligned_cols=99 Identities=6% Similarity=0.057 Sum_probs=61.0
Q ss_pred CCCCeEEEeeccC-------------CCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 20 HQSSWISLTKWVP-------------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 20 ~R~~~~I~tK~~~-------------~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
.|..+.|+|-+|- .....+...|..++-..-+.++.....++++-.-.|..- ++.+++++..+++.
T Consensus 103 ~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N-~d~V~~~~~~l~~~ 181 (342)
T PRK14465 103 GRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHN-YFNVIRAASILHDP 181 (342)
T ss_pred CceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhh-HHHHHHHHHHHhCh
Confidence 4677999998872 112457888888887766666655555555553223222 47888888888775
Q ss_pred -C---CccEEEccCCCH-HHHHHHHHcCCCeeEeeeecc
Q 023592 87 -G---KIKTVALTNFDT-ERLRIILENGIPVVSNQVQHS 120 (280)
Q Consensus 87 -G---kir~iGvs~~~~-~~l~~~~~~~~~~~~~q~~~n 120 (280)
| .-+.|-||+.+. ..+.++.... ....+.+..|
T Consensus 182 ~~~~~~~r~itvST~G~~~~i~~l~~~~-~~~~LaiSLh 219 (342)
T PRK14465 182 DAFNLGAKRITISTSGVVNGIRRFIENK-EPYNFAISLN 219 (342)
T ss_pred hhhcCCCCeEEEeCCCchHHHHHHHhhc-cCceEEEEec
Confidence 2 456888998876 5555555421 1234444444
No 122
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=36.89 E-value=1.1e+02 Score=29.19 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=42.3
Q ss_pred HhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeEeeeeccc
Q 023592 50 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSV 121 (280)
Q Consensus 50 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n~ 121 (280)
...+|.|++-+.+......... .+....+.+... ++.+||- |-+++.+.++++ ...++++|++-+.
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~--~~~a~~i~~~l~---v~~VgVfv~~~~~~i~~i~~-~~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVS--LEQAQEIIAAAP---LRYVGVFRNADIEDIVDIAK-QLSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCC--HHHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHH-HcCCCEEEeCCCC
Confidence 3458999999875443222232 222333333222 8889987 777888888877 4678999998764
No 123
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=36.78 E-value=2.1e+02 Score=22.56 Aligned_cols=65 Identities=6% Similarity=-0.038 Sum_probs=43.1
Q ss_pred CCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC
Q 023592 21 QSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 87 (280)
Q Consensus 21 R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~G 87 (280)
|=-+.|+-|++. .......|++.+.++.+.+. ....|++++-.+.....++.++.+.|..|.+.-
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k~ 115 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRRA 115 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 444666667642 12345667777777666442 234499999988766666888889998888763
No 124
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=36.69 E-value=1.9e+02 Score=26.80 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccCh-hhhHHHHHHHhCCeEEEecccccc
Q 023592 73 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G 150 (280)
+..++..+..+.+.+.++.+-+...+.+.++++++.+.+..++..+-|+.-.-. -.++.+.|+++|+-++.=.+++.|
T Consensus 109 Y~~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 109 YGGSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred chHHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 345555566655555566666665567777777653445666777777754322 356899999999999976666544
No 125
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=36.55 E-value=1.1e+02 Score=22.64 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=33.5
Q ss_pred ccCCCHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccc
Q 023592 94 LTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 94 vs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 147 (280)
.+.-+.+.+..++... +|+++-+.-.--.+.+..++.++++++||++..+.+-
T Consensus 36 ~~~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 36 LSDLDPEALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred cccCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 3344566666666533 3555444433322344568899999999999998764
No 126
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=36.46 E-value=2.4e+02 Score=23.17 Aligned_cols=100 Identities=22% Similarity=0.236 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhcCCCcccEEEEecCC-CCCCcHHHHHHHHHHHHHcCCccEEEccCCCH--HHHHHHHHcCCCeeEeee
Q 023592 41 IVRESIDVSRRRMDVPCLDMLQFHWWD-YSNPGYLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQV 117 (280)
Q Consensus 41 ~i~~~i~~SL~~L~~d~iDl~~lH~~~-~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~--~~l~~~~~~~~~~~~~q~ 117 (280)
.+...+.+.++..+..- +-+.+--.. ..........+.+..|++.|- .+.+.+++. ..+..+. ..+|+++-+
T Consensus 100 ~~~~~l~~~l~~~~~~~-~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~--~l~~d~iKl 174 (241)
T smart00052 100 DLVPRVLELLEETGLPP-QRLELEITESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK--RLPVDLLKI 174 (241)
T ss_pred hHHHHHHHHHHHcCCCH-HHEEEEEeChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH--hCCCCeEEE
Confidence 44455666666655542 112222111 111213445589999999997 567776654 3333333 345676666
Q ss_pred eccccccC--------hhhhHHHHHHHhCCeEEEec
Q 023592 118 QHSVVDMR--------PQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 118 ~~n~~~~~--------~~~~~~~~~~~~gi~via~s 145 (280)
..+++... .-+.++..|+..|+.|++-.
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 210 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEG 210 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEec
Confidence 65544221 13467889999999999854
No 127
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=36.45 E-value=1.5e+02 Score=28.07 Aligned_cols=60 Identities=13% Similarity=-0.006 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHH
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 106 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 106 (280)
+.....+++-++|+.||.++ |= +.......+--.+.+++|+++|++ |...| +.+++++..
T Consensus 46 ~~~e~~~~I~~~L~WlGl~w-De-----~y~QSeR~~~Y~~~a~~Li~~G~A-Y~C~c--s~eel~~~r 105 (433)
T PRK12410 46 NIEGKDKEILEILNLFGISW-DK-----LVYQSENLKFHRQMAEKLLSEKKA-FACFC--SEEELEAKK 105 (433)
T ss_pred CChHHHHHHHHHHHHcCCCC-CC-----CeehhccHHHHHHHHHHHHHcCCe-eeecC--CHHHHHHHH
Confidence 34567789999999999987 52 222233245567889999999996 55555 566665543
No 128
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=36.36 E-value=1.8e+02 Score=22.49 Aligned_cols=61 Identities=10% Similarity=-0.003 Sum_probs=39.5
Q ss_pred CeEEEee-ccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 23 SWISLTK-WVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 23 ~~~I~tK-~~~~~~~~~~~~i~~~i~~SL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
-+.|+-| ++.. .....|++.+.++.+... ..-.|++++..+.....++.++.+.|..|.+.
T Consensus 49 G~~VsKK~~g~A---V~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 49 GLVIGKKSVKLA---VDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred EEEEecccCccH---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3555555 4432 245566666666665433 24689999999877666677777777777654
No 129
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=36.17 E-value=2e+02 Score=25.58 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCC------CHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhH
Q 023592 196 QTLKRIASKHGV------SIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTN 242 (280)
Q Consensus 196 ~~l~~la~~~~~------s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl 242 (280)
..|.++|+++|. ++.++=-.|+.... ...+-.|+| +|+.|-+++
T Consensus 228 ~rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGAS--tPd~lV~~V 277 (294)
T COG0761 228 NRLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGAS--TPDWLVQEV 277 (294)
T ss_pred HHHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCC--CCHHHHHHH
Confidence 688999999887 67888899998854 445788999 999977665
No 130
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=35.97 E-value=1.8e+02 Score=28.39 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCC--CCCCcHHHHHHHHHHHHHcCCccEEEc
Q 023592 40 SIVRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVAL 94 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~d~iDl~~lH~~~--~~~~~~~~~~~~L~~l~~~Gkir~iGv 94 (280)
+.+.+-|++.++..+-.+.+ -|... .....+.++...|.++++.|+||.+.+
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~ 413 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVV 413 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 66788899999988877777 22111 111124567778889999999999863
No 131
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=35.84 E-value=71 Score=21.15 Aligned_cols=18 Identities=44% Similarity=0.471 Sum_probs=15.3
Q ss_pred HHHHHHHHHcCCCHHHHH
Q 023592 196 QTLKRIASKHGVSIPVVA 213 (280)
Q Consensus 196 ~~l~~la~~~~~s~~q~a 213 (280)
-.+.+||+++|+++.+|-
T Consensus 23 i~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 23 IKLKDIAEKLGVSESTIR 40 (60)
T ss_pred ccHHHHHHHHCCCHHHHH
Confidence 378999999999998864
No 132
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=35.40 E-value=1.3e+02 Score=28.60 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 105 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 105 (280)
+.+...+.+.+.|+.||++ .|-++ .........-+.+++|+++|++ |...| +.++++..
T Consensus 49 s~~~~~~~I~e~L~wLGI~-~De~y-----~QSer~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~~~ 107 (445)
T PRK12558 49 SKQEYADAIAEDLKWLGIN-WDRTF-----RQSDRFDRYDEAAEKLKAAGRL-YPCYE--TPEELELK 107 (445)
T ss_pred chHHHHHHHHHHHHHcCCC-CCccc-----cHHHHHHHHHHHHHHHHHCCCE-EEecC--chHHHHHH
Confidence 4578999999999999997 46421 1222234567889999999996 66666 56666543
No 133
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=35.39 E-value=2.5e+02 Score=26.48 Aligned_cols=102 Identities=15% Similarity=0.208 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC-CccEEEccCCCHHH---HHHHHHcCCCeeEee
Q 023592 41 IVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTER---LRIILENGIPVVSNQ 116 (280)
Q Consensus 41 ~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvs~~~~~~---l~~~~~~~~~~~~~q 116 (280)
-+.+++-..-.. +++. .++++|.-.+ -+...++.++++| .++++.+.+-.... ++++++.....+.+.
T Consensus 117 lvl~~v~~~~~~-~~~k-~iitl~~eH~------~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~ 188 (428)
T KOG1549|consen 117 LVLKGVARFFGD-KTKK-HIITLQTEHP------CVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIM 188 (428)
T ss_pred HHHHHhhccccc-cccc-eEEEecccCc------chhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEE
Confidence 344444443333 4433 4555554222 2344566677777 35667776444333 333333222222222
Q ss_pred eecc-ccccChhhhHHHHHHHhCCeEEEecccccc
Q 023592 117 VQHS-VVDMRPQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 117 ~~~n-~~~~~~~~~~~~~~~~~gi~via~spl~~G 150 (280)
.--| +.-..+-+++...|++.||.|..=...+-|
T Consensus 189 ~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG 223 (428)
T KOG1549|consen 189 HVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVG 223 (428)
T ss_pred ecccCccccccHHHHHHHhCcCCcEEEeehhhhcC
Confidence 2222 211233467888888888866654444434
No 134
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=35.20 E-value=3e+02 Score=25.79 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=49.3
Q ss_pred HHHHHHHHHHc------CCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEeccc
Q 023592 76 ALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 76 ~~~~L~~l~~~------Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl 147 (280)
-++.+.+|++. +.--..+=+.++.+.+..+++.+ -.+++|+-.+-+-.- ...++..+|+.+||.++..+..
T Consensus 280 ~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~-a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 280 QIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAK-AGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred hHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhC-CCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 35666666655 44445566677788888888743 378888887754221 1357899999999999987665
No 135
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=34.84 E-value=83 Score=26.19 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhh
Q 023592 206 GVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF 245 (280)
Q Consensus 206 ~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~ 245 (280)
..|-.++||+|+..++.-..+++|+.-++.+|.-.|+..+
T Consensus 75 D~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~l 114 (208)
T cd07995 75 DFTDFEKALKLALERGADEIVILGATGGRLDHTLANLNLL 114 (208)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEEccCCCcHHHHHHHHHHH
Confidence 4577899999999998888899999988999999999876
No 136
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=34.76 E-value=1.8e+02 Score=21.25 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=41.5
Q ss_pred CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcC--CCcccEEEEecCCCCCCcHHHHHHHHHHHH
Q 023592 20 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD--VPCLDMLQFHWWDYSNPGYLDALNHLTDLK 84 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~--~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~ 84 (280)
+|=-+.|+-|+|.. .....+++.+.++..... ....|++++-.+.....++.++.+.|+.|.
T Consensus 41 ~RlGi~vsKK~g~A---V~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l~ 104 (105)
T TIGR00188 41 PRVGLSVSKKVKNA---VERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQLF 104 (105)
T ss_pred cEEEEEEecccCch---hHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHHh
Confidence 34456777776643 345666666666665443 236899999988777666888888887764
No 137
>PRK07328 histidinol-phosphatase; Provisional
Probab=34.50 E-value=3e+02 Score=23.73 Aligned_cols=100 Identities=15% Similarity=0.273 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCCCcccEEEEecCCCC---CC---------cHHHHH----HHHHHHHHcCCccEEEccCC-------C-
Q 023592 43 RESIDVSRRRMDVPCLDMLQFHWWDYS---NP---------GYLDAL----NHLTDLKEEGKIKTVALTNF-------D- 98 (280)
Q Consensus 43 ~~~i~~SL~~L~~d~iDl~~lH~~~~~---~~---------~~~~~~----~~L~~l~~~Gkir~iGvs~~-------~- 98 (280)
...+++.|++-..||+ +..+|+.+.. .+ ...+++ +.+.++.+.|.+.-+|=-.. .
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~~~~~ 172 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFGHRPR 172 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcCCCCc
Confidence 4445556667667777 7788975311 01 112232 35777888888887773221 1
Q ss_pred ---HH---H-HHHHHHcCCCeeEeeeec--cccccChhhhHHHHHHHhCCeEEE
Q 023592 99 ---TE---R-LRIILENGIPVVSNQVQH--SVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 99 ---~~---~-l~~~~~~~~~~~~~q~~~--n~~~~~~~~~~~~~~~~~gi~via 143 (280)
.. . ++.+.+.+..+.++-..+ ..-...+...++..|++.|+.++.
T Consensus 173 ~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~iti 226 (269)
T PRK07328 173 EDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVL 226 (269)
T ss_pred hhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEE
Confidence 11 1 222222244344443221 111223345799999999988653
No 138
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=34.44 E-value=2.7e+02 Score=25.22 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEecccccc
Q 023592 77 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 77 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 150 (280)
++.+.+|.+...|. +.|=+.++...+..+++.+ -++++|+....+-.- .-.++..+|+++|+.++..+.+..|
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~-~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRG-AADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhC-CCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 56677777765555 6666677788888888743 367777765543211 1357889999999999876544443
No 139
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=34.35 E-value=87 Score=29.16 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeE
Q 023592 35 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 114 (280)
Q Consensus 35 ~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 114 (280)
.+.+++.+.+.+++..+. =+|++-+|..- +.+.++.+++.|++ .|+-+-...-+...+...
T Consensus 134 ~~~t~d~~~~~ie~qa~~----GVDfmtiH~gi--------t~~~~~~~~~~~R~--~giVSRGGs~l~~WM~~n----- 194 (420)
T PF01964_consen 134 VDMTEDDFFDVIEKQAKD----GVDFMTIHCGI--------TRETLERLKKSGRI--MGIVSRGGSILAAWMLHN----- 194 (420)
T ss_dssp GG--HHHHHHHHHHHHHH----T--EEEE-TT----------GGGGGGGT--TSS--S----HHHHHHHHHHHHH-----
T ss_pred hhCCHHHHHHHHHHHHHc----CCCEEEEccch--------hHHHHHHHhhhccc--cCccccchHHHHHHHHhc-----
Confidence 456889999999988875 67889999731 22457788888875 466655555555544431
Q ss_pred eeeeccccccChhhhHHHHHHHhCCeEEEecccccc
Q 023592 115 NQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 115 ~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 150 (280)
-.=|++...+ +++++.|+++++.+.--..+--|
T Consensus 195 --~~ENPly~~f-D~lLeI~k~yDVtLSLGDglRPG 227 (420)
T PF01964_consen 195 --GKENPLYEHF-DRLLEIAKEYDVTLSLGDGLRPG 227 (420)
T ss_dssp --TS--HHHHTH-HHHHHHHTTTT-EEEE--TT--S
T ss_pred --CCcCcHHHhH-HHHHHHHHHhCeeEecccccCCC
Confidence 1224555454 58999999999998744444333
No 140
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.15 E-value=3.6e+02 Score=24.49 Aligned_cols=102 Identities=9% Similarity=0.009 Sum_probs=62.4
Q ss_pred CCCCeEEEeeccC-------------CCCCCCHHHHHHHHHHHHhhcCC--CcccEEEEecCCCCCCcHHHHHHHHHHHH
Q 023592 20 HQSSWISLTKWVP-------------PPVKMTSSIVRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLK 84 (280)
Q Consensus 20 ~R~~~~I~tK~~~-------------~~~~~~~~~i~~~i~~SL~~L~~--d~iDl~~lH~~~~~~~~~~~~~~~L~~l~ 84 (280)
.|..+.|+|-.|- .....+.+.|.+++......+|+ ..++-+.+-.........+.+++++..+.
T Consensus 91 ~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~ 170 (343)
T PRK14468 91 DRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIML 170 (343)
T ss_pred CCCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhc
Confidence 4788999998762 12356889999998877766664 34666666643222222578888888884
Q ss_pred -HcCC---ccEEEccCCCH-HHHHHHHHcCCCeeEeeeecccc
Q 023592 85 -EEGK---IKTVALTNFDT-ERLRIILENGIPVVSNQVQHSVV 122 (280)
Q Consensus 85 -~~Gk---ir~iGvs~~~~-~~l~~~~~~~~~~~~~q~~~n~~ 122 (280)
..|. .+.+.+|+... ..+.++.+.+.++ .+.+..|-.
T Consensus 171 ~~~g~~l~~r~itvST~G~~~~i~~L~~~~l~~-~LaiSL~a~ 212 (343)
T PRK14468 171 HPQALAMSPRRVTLSTVGIPKGIRRLAEEDLGV-RLALSLHAP 212 (343)
T ss_pred ccccccccCceEEEECCCChHHHHHHHHhCcCc-EEEEEcCCC
Confidence 3443 26788887763 4555665533222 244444433
No 141
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=34.06 E-value=41 Score=32.70 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHhCCCCceeeecccCCCHhH-------HHHhHhhhcCCCCHHHHHHHHHHHhcCCCCccccCCCcc
Q 023592 208 SIPVVAVRYILDQPAVAGSMIGVRLGLAEH-------IQDTNAIFMLSLDEDDVNSIQEVTKKGKDLLGVIGDCGD 276 (280)
Q Consensus 208 s~~q~al~~~l~~~~v~~~i~G~~~~~~~~-------l~~nl~a~~~~Lt~e~~~~l~~~~~~~~~~~~~~~~~~~ 276 (280)
.|+...+.=.+.+ -|...-+|++ ...| ..+.+..+-.++.|..++.|+.+.+...+---|.|.||+
T Consensus 433 vPsAa~~a~~lak-evDFfSIGTN--DLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGE 505 (574)
T COG1080 433 VPSAALIADQLAK-EVDFFSIGTN--DLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGE 505 (574)
T ss_pred hhHHHHHHHHHHH-hCCEeeeccc--HHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechh
Confidence 4666556555554 4778888998 7665 344444555699999999999999888888889999995
No 142
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=33.22 E-value=89 Score=27.53 Aligned_cols=89 Identities=17% Similarity=0.205 Sum_probs=54.1
Q ss_pred HhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccC------CCHHHHHHHHHc-CCCeeEeeeecccc
Q 023592 50 RRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FDTERLRIILEN-GIPVVSNQVQHSVV 122 (280)
Q Consensus 50 L~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~------~~~~~l~~~~~~-~~~~~~~q~~~n~~ 122 (280)
+++..-+..|+..+..|.-.. ..+ +..++..-. .|=|+. |+...+.++.+. ++++.++-+.||+.
T Consensus 156 ~kk~a~E~~~~~IIDsaaG~g---CpV---i~sl~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 156 LKKHAKELADLLIIDSAAGTG---CPV---IASLKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred HHHhhhhhcceeEEecCCCCC---ChH---HHhhccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 333333348889998874321 222 223333333 333332 223333444443 88889999999774
Q ss_pred ccChhhhHHHHHHHhCCeEEEecccccc
Q 023592 123 DMRPQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 123 ~~~~~~~~~~~~~~~gi~via~spl~~G 150 (280)
+ . ++-++|++.|+.+++.-|+..-
T Consensus 228 ~---s-~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 228 D---S-EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred c---h-HHHHHHHHcCCCeeEECCcchh
Confidence 3 2 7889999999999999998553
No 143
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=33.20 E-value=3.5e+02 Score=24.05 Aligned_cols=70 Identities=10% Similarity=0.074 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCC----ccEEEccCCCHHHHHHHHHc--CCCeeEeeeeccccccC---------hhhhHHHHHHHh
Q 023592 73 YLDALNHLTDLKEEGK----IKTVALTNFDTERLRIILEN--GIPVVSNQVQHSVVDMR---------PQQKMAELCQLT 137 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gk----ir~iGvs~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~---------~~~~~~~~~~~~ 137 (280)
+++++++++.+++.|. |..+.+...+.+++.++++. ...+.+.-++|.++... ...++++..++.
T Consensus 143 ~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (331)
T PRK00164 143 LDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAER 222 (331)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhc
Confidence 5778888888888775 22333334455555555543 22334444444443221 123566667776
Q ss_pred CCeEE
Q 023592 138 GVKLI 142 (280)
Q Consensus 138 gi~vi 142 (280)
|+.+.
T Consensus 223 ~~~~~ 227 (331)
T PRK00164 223 GWTLQ 227 (331)
T ss_pred cCccc
Confidence 65443
No 144
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=33.01 E-value=2e+02 Score=25.21 Aligned_cols=99 Identities=14% Similarity=0.076 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhcCCCcccEEEEecCC--CCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeee
Q 023592 41 IVRESIDVSRRRMDVPCLDMLQFHWWD--YSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQ 118 (280)
Q Consensus 41 ~i~~~i~~SL~~L~~d~iDl~~lH~~~--~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~ 118 (280)
.-+..+-+.|.++|+++|++=.+-.|. +...+.+++...+.. ...++..++. -+...++.+++.+.+...+-+.
T Consensus 20 e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~---~~~~~~~~~~-~~~~dv~~A~~~g~~~i~i~~~ 95 (274)
T cd07938 20 EDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPR---RPGVRYSALV-PNLRGAERALAAGVDEVAVFVS 95 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhccc---CCCCEEEEEC-CCHHHHHHHHHcCcCEEEEEEe
Confidence 445566677999999999997443332 112223445555443 2346667765 4677888998875443333333
Q ss_pred cccc------ccCh------hhhHHHHHHHhCCeEEE
Q 023592 119 HSVV------DMRP------QQKMAELCQLTGVKLIT 143 (280)
Q Consensus 119 ~n~~------~~~~------~~~~~~~~~~~gi~via 143 (280)
.|-. .+.. -.+.++++++.|+.+..
T Consensus 96 ~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~ 132 (274)
T cd07938 96 ASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRG 132 (274)
T ss_pred cCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 2221 1111 23568899999988864
No 145
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=32.90 E-value=3.2e+02 Score=25.33 Aligned_cols=70 Identities=9% Similarity=0.032 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEeccc
Q 023592 77 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 77 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl 147 (280)
++.+.+|++.-.+. ..|=|.++...+..+++.+ -++++|....-...- .-..+..+|+.+|+.++.++..
T Consensus 246 ~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~-a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 246 QEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQ-LIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred HHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcC-CCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 56777888776555 6777788899999998853 378888876654221 2357899999999999986543
No 146
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=32.84 E-value=1.2e+02 Score=25.32 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHHHHcCCccEEEccCC-CHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEE
Q 023592 78 NHLTDLKEEGKIKTVALTNF-DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 78 ~~L~~l~~~Gkir~iGvs~~-~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 143 (280)
+.+++++++--=-.+|..+- +.++++.+++.+.+|.+- + ....+++++|+++|+.+++
T Consensus 48 ~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS-----P---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 48 EAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS-----P---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE-----S---S--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC-----C---CCCHHHHHHHHHcCCcccC
Confidence 33444443322245887754 468888888877655432 2 2346899999999999996
No 147
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=32.58 E-value=45 Score=25.84 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=20.9
Q ss_pred cChhhhHHHHHHHhCCeEEEecccc
Q 023592 124 MRPQQKMAELCQLTGVKLITYGTVM 148 (280)
Q Consensus 124 ~~~~~~~~~~~~~~gi~via~spl~ 148 (280)
++.-.++++.|++.||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3445789999999999999998775
No 148
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=31.87 E-value=3e+02 Score=24.75 Aligned_cols=69 Identities=22% Similarity=0.238 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEecc
Q 023592 77 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGT 146 (280)
Q Consensus 77 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~sp 146 (280)
++.+.++++.-.+. ..|=+.++.+.+..+++. ...+++|+....+-.- .-..+...|+++|+.++..+.
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-GAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-CCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 45566777765554 445566778888888874 3478888876654211 235789999999999887653
No 149
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=31.78 E-value=4.8e+02 Score=25.19 Aligned_cols=94 Identities=9% Similarity=-0.051 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeec
Q 023592 40 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQH 119 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~ 119 (280)
+.+.+...+.+ .-|.|.||+=.--. .+....+...++.+++...+ -|.|-++++..++++++.|.++ ++ ..
T Consensus 165 ~~i~~~A~~~~-~~GADIIDIG~~st----~p~~~~v~~~V~~l~~~~~~-pISIDT~~~~v~eaAL~aGAdi-IN--sV 235 (499)
T TIGR00284 165 DGIEGLAARME-RDGADMVALGTGSF----DDDPDVVKEKVKTALDALDS-PVIADTPTLDELYEALKAGASG-VI--MP 235 (499)
T ss_pred HHHHHHHHHHH-HCCCCEEEECCCcC----CCcHHHHHHHHHHHHhhCCC-cEEEeCCCHHHHHHHHHcCCCE-EE--EC
Confidence 55555555544 56888888764322 12234566777777766333 4899999999999999875432 22 11
Q ss_pred cccccChhhhHHHHHHHhCCeEEEec
Q 023592 120 SVVDMRPQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 120 n~~~~~~~~~~~~~~~~~gi~via~s 145 (280)
+- ....++++.+++.|.+++.+-
T Consensus 236 s~---~~~d~~~~l~a~~g~~vVlm~ 258 (499)
T TIGR00284 236 DV---ENAVELASEKKLPEDAFVVVP 258 (499)
T ss_pred Cc---cchhHHHHHHHHcCCeEEEEc
Confidence 22 122368888999998888764
No 150
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=31.75 E-value=2.6e+02 Score=22.07 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=40.8
Q ss_pred EEEccCCCH--HHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEecccccccc
Q 023592 91 TVALTNFDT--ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGGLL 152 (280)
Q Consensus 91 ~iGvs~~~~--~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G~L 152 (280)
-+|...|+. ..+..++.. .-|+++....+ +.+ .+.+..+-++++.+++.|.+.+|++
T Consensus 19 k~GlDgHd~gakvia~~l~d-~GfeVi~~g~~---~tp-~e~v~aA~~~dv~vIgvSsl~g~h~ 77 (143)
T COG2185 19 KLGLDGHDRGAKVIARALAD-AGFEVINLGLF---QTP-EEAVRAAVEEDVDVIGVSSLDGGHL 77 (143)
T ss_pred ccCccccccchHHHHHHHHh-CCceEEecCCc---CCH-HHHHHHHHhcCCCEEEEEeccchHH
Confidence 457777775 566667763 34776665544 344 5889999999999999999988754
No 151
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=31.37 E-value=1.7e+02 Score=27.42 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=28.7
Q ss_pred CCeeEeeeeccccccC----hhhhHHHHHHHhCCeEEEecccccc
Q 023592 110 IPVVSNQVQHSVVDMR----PQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 110 ~~~~~~q~~~n~~~~~----~~~~~~~~~~~~gi~via~spl~~G 150 (280)
++=.++-.+-|++... .-..++.|+.+++|.||+=..+++-
T Consensus 227 VkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~s 271 (471)
T KOG0256|consen 227 VKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGS 271 (471)
T ss_pred eeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhccc
Confidence 3445566666766422 2356899999999999998777663
No 152
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=31.37 E-value=2e+02 Score=25.74 Aligned_cols=74 Identities=19% Similarity=0.161 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEecccccc
Q 023592 76 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 76 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 150 (280)
-++.+.++++...+. ..|=|.++...+..++.. .-.+++|.....+-.- .-..+...|+.+|+.++..+.+..|
T Consensus 211 ~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 211 DLSMLDELAKGTITPICLDESITSLDDARNLIEL-GNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-CCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEccc
Confidence 356777887765554 677888889999998874 3378888776653221 1357899999999999987666555
No 153
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=31.26 E-value=2.4e+02 Score=26.53 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=45.7
Q ss_pred HHHHHHHcCCccEEEccCCCHHHHHHHHHc-----C-C-CeeEeeeeccccccChhhhHHHHHHHhCCeEEEecc
Q 023592 79 HLTDLKEEGKIKTVALTNFDTERLRIILEN-----G-I-PVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 146 (280)
Q Consensus 79 ~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-----~-~-~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 146 (280)
-...+-+.|-+..+|....+++++++.+.. . . +|-++-+ .++-+...+.++++.+.++||.++..+.
T Consensus 30 LVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 30 LVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 345666889999999999999998887764 1 2 3444333 3332222245789999999998886553
No 154
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=31.13 E-value=2.4e+02 Score=22.29 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH--cCCccEEEccCCCHHHHHHHHHcCCCee
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVV 113 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~~~~ 113 (280)
..+.+.|.+.+++--+.+|. .++++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.+.++++. ...-
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~-~~~~~QSN~-------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~-~~~P 95 (146)
T PRK13015 25 HETLADVEALCRAAAEALGL-EVEFRQSNH-------EGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAA-LELP 95 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCC-EEEEEeeCc-------HHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHc-CCCC
Confidence 34789999999999999997 466666442 2577777877754 46676667778888899999985 4444
Q ss_pred Eeeeecccc
Q 023592 114 SNQVQHSVV 122 (280)
Q Consensus 114 ~~q~~~n~~ 122 (280)
++.+..+-.
T Consensus 96 ~VEVHiSNi 104 (146)
T PRK13015 96 VIEVHISNV 104 (146)
T ss_pred EEEEEcCCc
Confidence 555555543
No 155
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=31.09 E-value=2.2e+02 Score=22.41 Aligned_cols=78 Identities=13% Similarity=0.155 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH--cCCccEEEccCCCHHHHHHHHHcCCCee
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVV 113 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~~~~ 113 (280)
..+.+.+.+.+.+--+.+|+ .++++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.+.+++.. ...-
T Consensus 23 ~~tl~~i~~~l~~~a~~~g~-~v~~~QSN~-------Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~-~~~P 93 (140)
T cd00466 23 TTTLADIEALLRELAAELGV-EVEFFQSNH-------EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAA-VSIP 93 (140)
T ss_pred cCCHHHHHHHHHHHHHHcCC-EEEEEeeCc-------HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHc-CCCC
Confidence 34789999999999999998 477766543 2577777877754 46666667778888899999884 4445
Q ss_pred Eeeeecccc
Q 023592 114 SNQVQHSVV 122 (280)
Q Consensus 114 ~~q~~~n~~ 122 (280)
++.+..+-.
T Consensus 94 ~VEVHiSNi 102 (140)
T cd00466 94 VIEVHISNI 102 (140)
T ss_pred EEEEecCCc
Confidence 556665544
No 156
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=31.02 E-value=1e+02 Score=23.13 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC
Q 023592 43 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 87 (280)
Q Consensus 43 ~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~G 87 (280)
+..+++.|+.+....+|.+++...+.-.....+....++.|...|
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 455555555555566677777766554444445566666665554
No 157
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=31.00 E-value=4.1e+02 Score=24.22 Aligned_cols=99 Identities=10% Similarity=0.063 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC-CccEEEccCCCHHHHHHHHHcCCCeeE
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG-KIKTVALTNFDTERLRIILENGIPVVS 114 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~G-kir~iGvs~~~~~~l~~~~~~~~~~~~ 114 (280)
.++.+... .+-+.|.++|+++|++- .|... +.-++.++.+.+.+ ..+..+++....+.++.+.+.+.+...
T Consensus 19 ~~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKL-AIARALDEAGVDELEVG---IPAMG----EEERAVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVH 90 (365)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEe---CCCCC----HHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEE
Confidence 34555444 45556999999999985 33221 23356667776664 367777777788888888876544333
Q ss_pred eeeeccccc------cCh------hhhHHHHHHHhCCeEE
Q 023592 115 NQVQHSVVD------MRP------QQKMAELCQLTGVKLI 142 (280)
Q Consensus 115 ~q~~~n~~~------~~~------~~~~~~~~~~~gi~vi 142 (280)
+-+..|..+ ... -.+.++++++.|+.|.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 333333211 111 1367889999998754
No 158
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.97 E-value=1.7e+02 Score=24.61 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCC---ccEEEccCC-CHHHHHHHHHcCCCee
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK---IKTVALTNF-DTERLRIILENGIPVV 113 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gk---ir~iGvs~~-~~~~l~~~~~~~~~~~ 113 (280)
+.+....-+ +.|-.-|+..+-+=+ ..+ ..++.+++++++-. =-.+|..+- +.++++.+++.+..|.
T Consensus 23 ~~~~a~~~~-~al~~~Gi~~iEit~------~~~---~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi 92 (213)
T PRK06552 23 SKEEALKIS-LAVIKGGIKAIEVTY------TNP---FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI 92 (213)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEEEC------CCc---cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE
Confidence 344444443 445555665544432 222 34556666665421 135887654 4688899988776555
Q ss_pred EeeeeccccccChhhhHHHHHHHhCCeEEE
Q 023592 114 SNQVQHSVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 114 ~~q~~~n~~~~~~~~~~~~~~~~~gi~via 143 (280)
+ ++ ....+++++|+++|+.+++
T Consensus 93 v-----sP---~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 93 V-----SP---SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred E-----CC---CCCHHHHHHHHHcCCCEEC
Confidence 4 33 2346899999999999985
No 159
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=30.86 E-value=1e+02 Score=22.51 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=38.6
Q ss_pred cCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEecccccc
Q 023592 95 TNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 95 s~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 150 (280)
+.++...+.++++. ..++++|+....+-.- .-..+.++|+.+|+.++..+. .++
T Consensus 3 ~~~~~~~~~~li~~-~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA-GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHT-TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHc-CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 55778888888884 3478888886654211 235789999999999999986 444
No 160
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=30.73 E-value=49 Score=24.10 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhh-------cCCCCHHHHHHHHHHH
Q 023592 192 QVLLQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIF-------MLSLDEDDVNSIQEVT 261 (280)
Q Consensus 192 ~~~~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~-------~~~Lt~e~~~~l~~~~ 261 (280)
...++++..|++..|+.+...... .+.+|... ..+|.- +.+.+.+.++.. +.+|||.+...|++.+
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q-~~~~~~p~-~~iG~G--K~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~ 79 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQ-KRRKPDPK-TYIGSG--KVEEIKELIEELDADLVVFDNELSPSQQRNLEKAL 79 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEe-cCCCCCcc-eeechh--HHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHH
Confidence 344689999999998866542221 22334443 477888 999999988764 3489999999999886
No 161
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.52 E-value=3.5e+02 Score=24.87 Aligned_cols=77 Identities=10% Similarity=0.059 Sum_probs=51.3
Q ss_pred HHHHHHHHHH-HHHcC---CccEEEcc--CCCHHHHHHHHHc--CCCeeEeeeeccccccCh--------hhhHHHHHHH
Q 023592 73 YLDALNHLTD-LKEEG---KIKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQL 136 (280)
Q Consensus 73 ~~~~~~~L~~-l~~~G---kir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~~--------~~~~~~~~~~ 136 (280)
++++++++.+ +.+.| +|+++=+. |.+.+.+..+.+. +....+.-++||++.... -..+.+..++
T Consensus 261 l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~~~~~~~~~ps~e~i~~F~~~L~~ 340 (368)
T PRK14456 261 LDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNSIVNIKFEPVCSSTRERFRDRLLD 340 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeeccCCCCCCCCCCHHHHHHHHHHHHH
Confidence 6788888875 45556 24444444 4555566666654 455678888999875422 2356777889
Q ss_pred hCCeEEEeccccc
Q 023592 137 TGVKLITYGTVMG 149 (280)
Q Consensus 137 ~gi~via~spl~~ 149 (280)
+|+.|+.....+.
T Consensus 341 ~Gi~vtvR~~~G~ 353 (368)
T PRK14456 341 AGLQVTVRKSYGT 353 (368)
T ss_pred CCCcEEeeCCCCc
Confidence 9999998877654
No 162
>PRK08392 hypothetical protein; Provisional
Probab=30.51 E-value=3.2e+02 Score=22.72 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=51.7
Q ss_pred HHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccC-------CC-HHHHHHHHHc----CCCe
Q 023592 45 SIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN-------FD-TERLRIILEN----GIPV 112 (280)
Q Consensus 45 ~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~-------~~-~~~l~~~~~~----~~~~ 112 (280)
..++.++. .||+ +..+|.... .+...+-++.+.++.+.|.+.-+|=-. .. ...+.++++. +..+
T Consensus 78 ~~~~~~~~--~D~v-I~SvH~~~~-~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~l 153 (215)
T PRK08392 78 ITDDFAKK--LDYV-IASVHEWFG-RPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAF 153 (215)
T ss_pred hHHHHHhh--CCEE-EEEeecCcC-CcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEE
Confidence 33344553 5777 778885322 222466778888888888877776321 11 1233333332 4434
Q ss_pred eEeeeeccccccChhhhHHHHHHHhCCeEEE
Q 023592 113 VSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 113 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 143 (280)
.++- ..+.+...+++.|++.|+.++.
T Consensus 154 EiNt-----~~~~p~~~~l~~~~~~G~~~~i 179 (215)
T PRK08392 154 EISS-----RYRVPDLEFIRECIKRGIKLTF 179 (215)
T ss_pred EEeC-----CCCCCCHHHHHHHHHcCCEEEE
Confidence 4442 2233456799999999987653
No 163
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=30.44 E-value=57 Score=20.24 Aligned_cols=22 Identities=9% Similarity=-0.085 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHH
Q 023592 196 QTLKRIASKHGVSIPVVAVRYI 217 (280)
Q Consensus 196 ~~l~~la~~~~~s~~q~al~~~ 217 (280)
+.++.+.++.|+|..++|-+--
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~g 26 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAG 26 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhC
Confidence 4566667777888877775443
No 164
>PRK06424 transcription factor; Provisional
Probab=30.42 E-value=1.5e+02 Score=23.31 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhCCC
Q 023592 192 QVLLQTLKRIASKHGVSIPVVAVRYILDQPA 222 (280)
Q Consensus 192 ~~~~~~l~~la~~~~~s~~q~al~~~l~~~~ 222 (280)
....+.++.+.++.|+|..++|-+--++...
T Consensus 83 ~~~g~~Ir~lRe~~GLSQ~eLA~~iGvs~st 113 (144)
T PRK06424 83 EDYAELVKNARERLSMSQADLAAKIFERKNV 113 (144)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 3444677888888999999988665544333
No 165
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=30.38 E-value=2.5e+02 Score=26.20 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CCCeeEeeeeccccccChh-hhHHHHHHHhCCeEEEecccccc
Q 023592 73 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GIPVVSNQVQHSVVDMRPQ-QKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~via~spl~~G 150 (280)
+..++..++++.++.-|....+...+...+.+++.. +.+..++..+=|++..-.+ ..+.+.|+++|+-++.=.+++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 578889999998888888888887777777777653 5778999999998765443 56889999999888888888887
Q ss_pred ccc
Q 023592 151 LLS 153 (280)
Q Consensus 151 ~L~ 153 (280)
.+.
T Consensus 192 ~~q 194 (396)
T COG0626 192 VLQ 194 (396)
T ss_pred ccc
Confidence 664
No 166
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=30.27 E-value=3.2e+02 Score=24.22 Aligned_cols=51 Identities=10% Similarity=-0.087 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
..+++.+.+++.+.+..-+.|.||+=.=+....+.........+|..|+++
T Consensus 86 ~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~ 136 (294)
T cd06543 86 CTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKE 136 (294)
T ss_pred cccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHH
Confidence 347899999999999999999999965553322222235566777777765
No 167
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=30.08 E-value=2.7e+02 Score=27.00 Aligned_cols=61 Identities=11% Similarity=-0.009 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHH
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 106 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 106 (280)
+.....+++-++|+.||.++ |= .|.......+--.+.+++|+++|++ |..+| +.+.+++..
T Consensus 51 ~~~~~~~~i~~~L~WLGl~w-De----~py~QSeR~~~Y~~~a~~Li~~G~A-Y~CfC--t~eel~~~r 111 (513)
T PRK14895 51 STKEAVEAIFSGLKWLGLDW-NG----EVIFQSKRNNLYKEAALKLLQNGKA-YYCFT--RQEEIERQR 111 (513)
T ss_pred cChHHHHHHHHHHHHcCCCC-CC----CceeEeCcHHHHHHHHHHHHHcCCe-EEecC--cHHHHHHHH
Confidence 34677888999999999987 50 0111122234455889999999996 66666 566666543
No 168
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=29.93 E-value=4.9e+02 Score=25.17 Aligned_cols=104 Identities=10% Similarity=0.080 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC----------CccEEEccCCCHHHHHHH
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG----------KIKTVALTNFDTERLRII 105 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~G----------kir~iGvs~~~~~~l~~~ 105 (280)
.++.+. +..+-+.|.++|+|+|.+-+ |... .+..++++.+.+.+ ..+-.+++....+.++.+
T Consensus 102 ~fs~ee-Ki~Ia~~L~~~GVd~IEvG~---Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a 173 (503)
T PLN03228 102 SLTPPQ-KLEIARQLAKLRVDIMEVGF---PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAA 173 (503)
T ss_pred CCCHHH-HHHHHHHHHHcCCCEEEEeC---CCCC----HHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHH
Confidence 345444 44566679999999988844 4322 22233444444332 133446666667777777
Q ss_pred HHc----CCCeeEeeeeccccc------cCh------hhhHHHHHHHhCCeEEEeccc
Q 023592 106 LEN----GIPVVSNQVQHSVVD------MRP------QQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 106 ~~~----~~~~~~~q~~~n~~~------~~~------~~~~~~~~~~~gi~via~spl 147 (280)
++. +.+-..+-+..+-.+ ... -.+.+.+++++|...+.+++-
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~E 231 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCE 231 (503)
T ss_pred HHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccc
Confidence 765 111111121221111 111 146788999999765565553
No 169
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=29.87 E-value=3e+02 Score=28.57 Aligned_cols=71 Identities=13% Similarity=0.112 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCC--------------------------cccEEEEecCCCCCCc--HHHHHHHHHHHHHcC
Q 023592 36 KMTSSIVRESIDVSRRRMDVP--------------------------CLDMLQFHWWDYSNPG--YLDALNHLTDLKEEG 87 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d--------------------------~iDl~~lH~~~~~~~~--~~~~~~~L~~l~~~G 87 (280)
+.....+.+.++.+|+.+|.- ...+++|..|....+. ...+|..+.++++.|
T Consensus 669 G~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g 748 (885)
T KOG0059|consen 669 GLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNG 748 (885)
T ss_pred CCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 456678999999999988742 5677888887655442 367999999999999
Q ss_pred CccEEEccCCCHHHHHHHHHc
Q 023592 88 KIKTVALTNFDTERLRIILEN 108 (280)
Q Consensus 88 kir~iGvs~~~~~~l~~~~~~ 108 (280)
+ ++=+.+|+-++.+.+...
T Consensus 749 ~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 749 K--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred C--EEEEEcCCHHHHHHHhhh
Confidence 9 899999999998888763
No 170
>PHA02128 hypothetical protein
Probab=29.41 E-value=1.4e+02 Score=22.32 Aligned_cols=71 Identities=7% Similarity=0.246 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-------------------CCCe-eEeeeeccccccChhhhHHHH
Q 023592 74 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-------------------GIPV-VSNQVQHSVVDMRPQQKMAEL 133 (280)
Q Consensus 74 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-------------------~~~~-~~~q~~~n~~~~~~~~~~~~~ 133 (280)
..++....++..+|-+|-|-+...+-..+.+.+.. .++| .+-..+|.+-.+...++++++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 46777888999999999999988777777766532 1222 233456666555555789999
Q ss_pred HHHhCCeEEEe
Q 023592 134 CQLTGVKLITY 144 (280)
Q Consensus 134 ~~~~gi~via~ 144 (280)
+-.+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999998865
No 171
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=29.19 E-value=3e+02 Score=25.26 Aligned_cols=78 Identities=17% Similarity=0.191 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccCh-hhhHHHHHHHhCCeEEEecccccc
Q 023592 73 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G 150 (280)
+...+..+..+...+.+...-+...+.+.+++++..+.+..++..+-|+.-.-. ...+.+.|+++|+-++.=.+++.+
T Consensus 100 y~~~~~~~~~~~~~~~~~v~~~d~~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~ 178 (382)
T TIGR02080 100 YGGTYRLLNALAKKGCFRVLFVDQGDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSP 178 (382)
T ss_pred cHHHHHHHHHHHhhcCeEEEEECCCCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 345566666665555555444555567777777754455666667777653322 357889999999988876665444
No 172
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=29.08 E-value=3.4e+02 Score=24.44 Aligned_cols=69 Identities=19% Similarity=0.204 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEec
Q 023592 76 ALNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 76 ~~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~s 145 (280)
-++.+.+|++...|. +.|=+.++...+..+++. ...+++|......-.- .-..+...|+.+|+.++.++
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-RAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-CCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 356777788776666 667777888999999884 3478888876654221 23578999999999988764
No 173
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=28.97 E-value=3.8e+02 Score=23.16 Aligned_cols=99 Identities=10% Similarity=0.206 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEec-CCCCC-------CcHHHHHHHHHHHHHc-CCccEEEccCCC--------
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHW-WDYSN-------PGYLDALNHLTDLKEE-GKIKTVALTNFD-------- 98 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~-~~~~~-------~~~~~~~~~L~~l~~~-Gkir~iGvs~~~-------- 98 (280)
+.+...++..+... ..+|++. ++.|-. +.... ......++.++.+++. |....+|+..+.
T Consensus 69 ~~n~~~l~~~L~~~-~~~Gi~~--iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~yPe~hp~~~~ 145 (274)
T cd00537 69 DRNRIELQSILLGA-HALGIRN--ILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAYPEGHPEAPS 145 (274)
T ss_pred CCCHHHHHHHHHHH-HHCCCCe--EEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCccccccCCCcCCCCCC
Confidence 44566676666665 5556543 455532 21111 1133455556666554 244578886553
Q ss_pred H-HHHHHHHH---cCCCeeEeeeeccccccChhhhHHHHHHHhCCe
Q 023592 99 T-ERLRIILE---NGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 140 (280)
Q Consensus 99 ~-~~l~~~~~---~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 140 (280)
. .++..+.+ .|..+.+-|.-|+. ..-.++++.|++.|+.
T Consensus 146 ~~~~~~~L~~Ki~aGA~f~iTQ~~fd~---~~~~~~~~~~~~~gi~ 188 (274)
T cd00537 146 LEEDIKRLKRKVDAGADFIITQLFFDN---DAFLRFVDRCRAAGIT 188 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEeecccccH---HHHHHHHHHHHHcCCC
Confidence 1 23333333 27789999999986 2335788899999853
No 174
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.87 E-value=4.7e+02 Score=24.17 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=58.6
Q ss_pred EEEEecCCCC----------CCcHHHHHHHHHHHH-HcCC---ccEEEcc--CCCHHHHHHHHHc--CC---CeeEeeee
Q 023592 60 MLQFHWWDYS----------NPGYLDALNHLTDLK-EEGK---IKTVALT--NFDTERLRIILEN--GI---PVVSNQVQ 118 (280)
Q Consensus 60 l~~lH~~~~~----------~~~~~~~~~~L~~l~-~~Gk---ir~iGvs--~~~~~~l~~~~~~--~~---~~~~~q~~ 118 (280)
.+.||.+++. ...+.++++++.+.. +.|+ |.|+=+. |.+.+.+.++.+. +. ...++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 4678877532 112678899988777 4454 4444444 4555555555553 44 57899999
Q ss_pred ccccccC----h----hhhHHHHHHHhCCeEEEeccccc
Q 023592 119 HSVVDMR----P----QQKMAELCQLTGVKLITYGTVMG 149 (280)
Q Consensus 119 ~n~~~~~----~----~~~~~~~~~~~gi~via~spl~~ 149 (280)
||+.... + -..+.+..+++||.+......+.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
Confidence 9986431 1 23577788899999998877655
No 175
>PRK14017 galactonate dehydratase; Provisional
Probab=28.67 E-value=3.2e+02 Score=25.06 Aligned_cols=70 Identities=19% Similarity=0.159 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeecccccc-ChhhhHHHHHHHhCCeEEEeccc
Q 023592 77 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDM-RPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 77 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~via~spl 147 (280)
++.+.+|.+...+. ..|=|.++...+..+++.+ -++++|.....+-. ..-..+.++|+.+|+.++..+..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~-a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAG-GVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcC-CCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 46677787776655 6677778888888888853 37888887665422 12357899999999999987653
No 176
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=28.37 E-value=4.6e+02 Score=23.93 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCC-ccEEEccCCCHHHHHHHHHcCCCeeEe
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGK-IKTVALTNFDTERLRIILENGIPVVSN 115 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gk-ir~iGvs~~~~~~l~~~~~~~~~~~~~ 115 (280)
++.+... .+-+.|.++|+++|.+- +|... ++-++.+..+.+.+. .+-.+++......++.+.+.+.+...+
T Consensus 19 ~s~~~k~-~ia~~L~~~Gv~~IEvG---~p~~~----~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i 90 (363)
T TIGR02090 19 LTVEQKV-EIARKLDELGVDVIEAG---FPIAS----EGEFEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHT 90 (363)
T ss_pred CCHHHHH-HHHHHHHHcCCCEEEEe---CCCCC----hHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEE
Confidence 4544444 45566999999999974 33221 223566666665544 455556666788888888875543333
Q ss_pred eeeccccc------cCh------hhhHHHHHHHhCCeEE
Q 023592 116 QVQHSVVD------MRP------QQKMAELCQLTGVKLI 142 (280)
Q Consensus 116 q~~~n~~~------~~~------~~~~~~~~~~~gi~vi 142 (280)
-+..|..+ +.. -.+.+.++++.|+.|.
T Consensus 91 ~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~ 129 (363)
T TIGR02090 91 FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE 129 (363)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 33333221 111 2357889999998754
No 177
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=28.33 E-value=32 Score=21.52 Aligned_cols=13 Identities=0% Similarity=0.010 Sum_probs=7.4
Q ss_pred CHhHHHHhHhhhc
Q 023592 234 LAEHIQDTNAIFM 246 (280)
Q Consensus 234 ~~~~l~~nl~a~~ 246 (280)
+.+.+....++++
T Consensus 37 ~~~~~~~ia~~l~ 49 (55)
T PF01381_consen 37 SLDTLKKIAKALG 49 (55)
T ss_dssp BHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHC
Confidence 4555655555555
No 178
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=28.26 E-value=1.6e+02 Score=27.54 Aligned_cols=60 Identities=8% Similarity=0.204 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CCCeeEeeeeccccccChhhhHHHHHHHhC--CeEEEe
Q 023592 74 LDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQKMAELCQLTG--VKLITY 144 (280)
Q Consensus 74 ~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g--i~via~ 144 (280)
-.+++++.+..++++ ++...+.+.+.+.++. |++|..+-...| .+.++.+++.+ ++++++
T Consensus 121 VPiYqa~~~~~~k~~----~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~-------~~~~~~~~~~~R~~giVSR 186 (431)
T PRK13352 121 VPIYQAAVEAARKYG----SVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT-------RETLERLKKSGRIMGIVSR 186 (431)
T ss_pred hhHHHHHHHHHhcCC----ChhhCCHHHHHHHHHHHHHhCCCEEEEccchh-------HHHHHHHHhcCCccCeecC
Confidence 467888888876655 7788899888888775 655554444333 46777887654 777765
No 179
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=28.04 E-value=3.6e+02 Score=24.54 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=46.1
Q ss_pred CCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHH-HHHHHHHHHHcCCccEEEccCCCHH
Q 023592 22 SSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLD-ALNHLTDLKEEGKIKTVALTNFDTE 100 (280)
Q Consensus 22 ~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~-~~~~L~~l~~~Gkir~iGvs~~~~~ 100 (280)
+-+.++|=+. +-+.|+++++...++=. .|+.+||+.......+++ -+.+|..|.+.= ---||+|.|+..
T Consensus 148 kPiIlSTGma------~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g 217 (347)
T COG2089 148 KPIILSTGMA------TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLG 217 (347)
T ss_pred CCEEEEcccc------cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccc
Confidence 3566666553 45788888887766633 399999986433222333 245555555552 446999999976
Q ss_pred HHHHH
Q 023592 101 RLRII 105 (280)
Q Consensus 101 ~l~~~ 105 (280)
-+.-+
T Consensus 218 ~~a~l 222 (347)
T COG2089 218 ILAPL 222 (347)
T ss_pred hhHHH
Confidence 44433
No 180
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=27.98 E-value=2.1e+02 Score=24.69 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=42.6
Q ss_pred cccccchHhhhc--CCCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCC-CcHHHHHHHHHHH
Q 023592 7 SMASSSIEFVER--GHQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN-PGYLDALNHLTDL 83 (280)
Q Consensus 7 ~~~~~se~~~~~--~~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~-~~~~~~~~~L~~l 83 (280)
|...++-.++.. ....-++|+|=.+ +.+.|+++++...+. ..-|+.++|+..... +.-+-=+..+..|
T Consensus 97 S~dl~n~~lL~~~A~tgkPvIlSTG~s------tl~EI~~Av~~~~~~---~~~~l~llHC~s~YP~~~e~~NL~~i~~L 167 (241)
T PF03102_consen 97 SGDLTNLPLLEYIAKTGKPVILSTGMS------TLEEIERAVEVLREA---GNEDLVLLHCVSSYPTPPEDVNLRVIPTL 167 (241)
T ss_dssp GGGTT-HHHHHHHHTT-S-EEEE-TT--------HHHHHHHHHHHHHH---CT--EEEEEE-SSSS--GGG--TTHHHHH
T ss_pred cccccCHHHHHHHHHhCCcEEEECCCC------CHHHHHHHHHHHHhc---CCCCEEEEecCCCCCCChHHcChHHHHHH
Confidence 344445555544 2334466666443 567888887776444 366899999864321 2112235566666
Q ss_pred HHcCCccEEEccCCCHH
Q 023592 84 KEEGKIKTVALTNFDTE 100 (280)
Q Consensus 84 ~~~Gkir~iGvs~~~~~ 100 (280)
++.=- --||+|.|+..
T Consensus 168 ~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 168 KERFG-VPVGYSDHTDG 183 (241)
T ss_dssp HHHST-SEEEEEE-SSS
T ss_pred HHhcC-CCEEeCCCCCC
Confidence 64422 57899999864
No 181
>PRK10551 phage resistance protein; Provisional
Probab=27.96 E-value=3.1e+02 Score=26.47 Aligned_cols=115 Identities=10% Similarity=0.113 Sum_probs=69.1
Q ss_pred CeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEE-EecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCH--
Q 023592 23 SWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQ-FHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT-- 99 (280)
Q Consensus 23 ~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~-lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~-- 99 (280)
...|+-.+.+. ....+.+...+.+.++.++.+..-+.+ +...... . ..+..+.++.|++.|- .|.+.+|+.
T Consensus 349 ~~~lsINis~~--~l~~~~f~~~l~~~l~~~~~~~~~LvlEItE~~~~-~-~~~~~~~l~~Lr~~G~--~ialDDFGtg~ 422 (518)
T PRK10551 349 GAKLGINISPA--HLHSDSFKADVQRLLASLPADHFQIVLEITERDMV-Q-EEEATKLFAWLHSQGI--EIAIDDFGTGH 422 (518)
T ss_pred CcEEEEEeCHH--HHCCchHHHHHHHHHHhCCCCcceEEEEEechHhc-C-CHHHHHHHHHHHHCCC--EEEEECCCCCc
Confidence 45566566542 223356777788888888876533222 3322221 2 1446688999999998 667776653
Q ss_pred HHHHHHHHcCCCeeEeeeecccccc---C-----hhhhHHHHHHHhCCeEEEec
Q 023592 100 ERLRIILENGIPVVSNQVQHSVVDM---R-----PQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 100 ~~l~~~~~~~~~~~~~q~~~n~~~~---~-----~~~~~~~~~~~~gi~via~s 145 (280)
..+..+. ..+++.+-+.-+.... + .-+.++..|++.|+.++|=+
T Consensus 423 ssl~~L~--~l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEG 474 (518)
T PRK10551 423 SALIYLE--RFTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEG 474 (518)
T ss_pred hhHHHHH--hCCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 3333333 3456666665544321 1 12468999999999999853
No 182
>TIGR02607 antidote_HigA addiction module antidote protein, HigA family. Members of this family form a distinct clade within the larger family HTH_3 of helix-turn-helix proteins, described by Pfam model pfam01381. Members of this clade are strictly bacterial and nearly always shorter than 110 amino acids. This family includes the characterized member HigA, without which the killer protein HigB cannot be cloned. The hig (host inhibition of growth) system is noted to be unusual in that killer protein is uncoded by the upstream member of the gene pair.
Probab=27.88 E-value=1.2e+02 Score=20.45 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=33.5
Q ss_pred HHH-HHHHHcCCCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhhcCCCCHHHHHHHHHH
Q 023592 197 TLK-RIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLSLDEDDVNSIQEV 260 (280)
Q Consensus 197 ~l~-~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~ 260 (280)
.+. .+.++.|+|..++|-+--++...+.-..-|-+..+++.+....++++ .+++.+-.+...
T Consensus 8 ~i~~~~~~~~~~t~~~lA~~~gis~~tis~~~~g~~~~~~~~~~~l~~~l~--v~~~~l~~~~~~ 70 (78)
T TIGR02607 8 ILREEFLEPLGLSIRALAKALGVSRSTLSRIVNGRRGITADMALRLAKALG--TSPEFWLNLQNA 70 (78)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 444 45555666666655555444444444444444335666666666665 556665554443
No 183
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=27.68 E-value=3.6e+02 Score=22.39 Aligned_cols=68 Identities=16% Similarity=0.326 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCH----HHHHHHHHcCCCeeE
Q 023592 40 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT----ERLRIILENGIPVVS 114 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~----~~l~~~~~~~~~~~~ 114 (280)
..+.+.+++.++.+|.+. .++ .+...+ .....+.++.+.++| +..|-++..+. ..+.++.+.++++..
T Consensus 14 ~~~~~g~~~~a~~~g~~~-~~~----~~~~~d-~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~ 85 (257)
T PF13407_consen 14 QQVIKGAKAAAKELGYEV-EIV----FDAQND-PEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVT 85 (257)
T ss_dssp HHHHHHHHHHHHHHTCEE-EEE----EESTTT-HHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHcCCEE-EEe----CCCCCC-HHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEE
Confidence 567788888888888733 222 222333 466778888888776 77777664443 344444443454333
No 184
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.65 E-value=3.3e+02 Score=24.91 Aligned_cols=77 Identities=14% Similarity=0.098 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHcCC----ccEEEcc--CCCHHHHHHHHHc--CCCeeEeeeeccccccC----h-h---hhHHHHHHH
Q 023592 73 YLDALNHLTDLKEEGK----IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR----P-Q---QKMAELCQL 136 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gk----ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~----~-~---~~~~~~~~~ 136 (280)
+++++++++++.+.+. |+++=+. |.+.+.+.++.+. +.+..++-++||++... + . ..+.+.+++
T Consensus 245 l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~ 324 (356)
T PRK14455 245 LEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKK 324 (356)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHHH
Confidence 5789999998877542 3344333 4455666666654 55577888999987531 1 1 345666888
Q ss_pred hCCeEEEeccccc
Q 023592 137 TGVKLITYGTVMG 149 (280)
Q Consensus 137 ~gi~via~spl~~ 149 (280)
+|+.++.....+.
T Consensus 325 ~gi~v~ir~~~g~ 337 (356)
T PRK14455 325 NGVNCTIRREHGT 337 (356)
T ss_pred CCCcEEEeCCCCc
Confidence 9999988776544
No 185
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=27.34 E-value=2.2e+02 Score=26.42 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccChh-hhHHHHHHHhC-CeEEEecccccc
Q 023592 73 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQ-QKMAELCQLTG-VKLITYGTVMGG 150 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g-i~via~spl~~G 150 (280)
+..+.+.++++....-|...=+...+.+.++++++...+..++..+=|+...-.+ ..+.+.|+++| +.++.=++++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 4678888887665555554444555778888888755667888889898654433 56889999999 999998888777
Q ss_pred ccc
Q 023592 151 LLS 153 (280)
Q Consensus 151 ~L~ 153 (280)
.+.
T Consensus 184 ~~~ 186 (386)
T PF01053_consen 184 YNQ 186 (386)
T ss_dssp TTC
T ss_pred eee
Confidence 553
No 186
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=27.08 E-value=2.4e+02 Score=26.09 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEeccc
Q 023592 77 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 77 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl 147 (280)
++.+.+|++...+. ..|-|.++...+..+++.+ -++++|......-.- .-.++...|+.+|+.++.++..
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~-avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLN-AVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcC-CCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 45666677665554 5566667777888887743 377777776643221 1357899999999999988765
No 187
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=27.08 E-value=1.9e+02 Score=22.09 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=19.3
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC
Q 023592 44 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 87 (280)
Q Consensus 44 ~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~G 87 (280)
..+.+.|+.+...-+|.+++...+.-.....+.+..++.|.+.|
T Consensus 52 p~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (148)
T smart00857 52 PGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKG 95 (148)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCC
Confidence 33444444444444455555544433332334444444444444
No 188
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.00 E-value=4e+02 Score=24.25 Aligned_cols=84 Identities=8% Similarity=0.074 Sum_probs=53.6
Q ss_pred CCCCeEEEeeccC-------------CCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH-
Q 023592 20 HQSSWISLTKWVP-------------PPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE- 85 (280)
Q Consensus 20 ~R~~~~I~tK~~~-------------~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~- 85 (280)
.|..+.|+|-.|- .....+.+.|.+++....+..++++| .++-.-.+. ...+++++++..+.+
T Consensus 101 ~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl-~n~~~vi~~l~~l~~~ 177 (349)
T PRK14463 101 DRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPL-ANLDNVIPALQILTDP 177 (349)
T ss_pred CCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcch-hcHHHHHHHHHHhhcc
Confidence 4788888888761 12346889999998887766655443 333322332 235788899998885
Q ss_pred cCC---ccEEEccCCCH-HHHHHHH
Q 023592 86 EGK---IKTVALTNFDT-ERLRIIL 106 (280)
Q Consensus 86 ~Gk---ir~iGvs~~~~-~~l~~~~ 106 (280)
.|. .+++.||+.+. ..+.++.
T Consensus 178 ~gl~~s~r~itVsTnGl~~~i~~l~ 202 (349)
T PRK14463 178 DGLQFSTRKVTVSTSGLVPEMEELG 202 (349)
T ss_pred cccCcCCceEEEECCCchHHHHHHh
Confidence 565 47888876663 4444443
No 189
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=26.97 E-value=1.5e+02 Score=22.56 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=34.4
Q ss_pred CHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccc
Q 023592 98 DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 147 (280)
+++.++..++....+.++-+.-..-.+.+...+...|+..||++-.|+.-
T Consensus 56 t~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~ 105 (127)
T COG3737 56 TPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTG 105 (127)
T ss_pred CHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccch
Confidence 45667776664333555555544444556678999999999999988864
No 190
>PF00292 PAX: 'Paired box' domain; InterPro: IPR001523 The paired box is a conserved 124 amino acid N-terminal domain of unknown function that usually, but not always, precedes a homeobox domain (see IPR001356 from INTERPRO) [, ]. Paired box genes are expressed in alternate segments of the developing fruit fly, the observed grouping of segments into pairs depending on the position of the segment in the segmental array, and not on the identity of the segment as in the case of homeotic genes. This implies that the genes affect different processes from those altered by homeotic genes.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 6PAX_A 1K78_E 1MDM_A 2K27_A 1PDN_C.
Probab=26.78 E-value=10 Score=29.16 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeeccc---CCCHhHHHHhHhhhcCCCCHHHHHHHHHHHhcCCCCcccc
Q 023592 195 LQTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVR---LGLAEHIQDTNAIFMLSLDEDDVNSIQEVTKKGKDLLGVI 271 (280)
Q Consensus 195 ~~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~---~~~~~~l~~nl~a~~~~Lt~e~~~~l~~~~~~~~~~~~~~ 271 (280)
...+.+++.. |+.+.+++=+.-.+++.|+-++---. |..|..+.-. --...|++....|+....+++..|+|.
T Consensus 23 R~rIvela~~-G~rp~~Isr~l~Vs~gcVsKIl~Ry~eTGsi~Pg~iGGs---kprv~tp~v~~~I~~~k~enP~ifawE 98 (125)
T PF00292_consen 23 RQRIVELAKE-GVRPCDISRQLRVSHGCVSKILSRYRETGSIRPGPIGGS---KPRVATPEVVEKIEQYKRENPTIFAWE 98 (125)
T ss_dssp HHHHHHHHHT-T--HHHHHHHHT--HHHHHHHHHHHHHHS-SS----S-------SSS-HCHHHHHHHHHHH-TTS-HHH
T ss_pred HHHHHHHhhh-cCCHHHHHHHHccchhHHHHHHHHHHHhcccCcccccCC---CCCCCChHHHHHHHHHHhcCCCcchHH
Confidence 4677777764 88999988888888887664331000 0022221110 012578888889999888899988883
No 191
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=26.76 E-value=3.4e+02 Score=22.64 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=39.0
Q ss_pred HHHHHcCCccEEEccCCCHHHHHHHHHc--CCCeeEe----------------------eeeccccc---cChhhhHHHH
Q 023592 81 TDLKEEGKIKTVALTNFDTERLRIILEN--GIPVVSN----------------------QVQHSVVD---MRPQQKMAEL 133 (280)
Q Consensus 81 ~~l~~~Gkir~iGvs~~~~~~l~~~~~~--~~~~~~~----------------------q~~~n~~~---~~~~~~~~~~ 133 (280)
+.+++.|....+=+++|+.+.+..+.+. ..+..+. ...+..+. .....++++.
T Consensus 110 ~~l~~~~~~~~v~i~SF~~~~l~~~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 189 (226)
T cd08568 110 EIVEKFNALDRVIFSSFNHDALRELRKLDPDAKVGLLIGEEEEGFSIPELHEKLKLYSLHVPIDAIGYIGFEKFVELLRL 189 (226)
T ss_pred HHHHHcCCCCcEEEEECCHHHHHHHHHhCCCCcEEEEeeccccccCHHHHHHhcCCcEeccchhhhccccccccHHHHHH
Confidence 3344556667788888998888877764 1211111 11111110 0012578899
Q ss_pred HHHhCCeEEEecc
Q 023592 134 CQLTGVKLITYGT 146 (280)
Q Consensus 134 ~~~~gi~via~sp 146 (280)
++++|+.|.+|..
T Consensus 190 ~~~~G~~v~~WTv 202 (226)
T cd08568 190 LRKLGLKIVLWTV 202 (226)
T ss_pred HHHCCCEEEEEcC
Confidence 9999999999964
No 192
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=26.68 E-value=2e+02 Score=21.56 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=30.9
Q ss_pred CHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccc
Q 023592 98 DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 147 (280)
+.+.+..+.....+|+++-+.-.--......++...++++||++..+.+-
T Consensus 41 ~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T~ 90 (114)
T cd05125 41 TEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDTR 90 (114)
T ss_pred CHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECHH
Confidence 45555555543223445444433322344567889999999999998765
No 193
>PRK10508 hypothetical protein; Provisional
Probab=26.67 E-value=1.2e+02 Score=27.49 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHH
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK 84 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~ 84 (280)
+++.+.+.+.+..+++|+|.+ +++.... + .++.++.++-|.
T Consensus 287 tpe~V~~kl~~l~~~~g~del---~~~~~~~--~-~e~~~~S~~lla 327 (333)
T PRK10508 287 DKAKVRHGLQSILRETQADEI---MVNGQIF--D-HQARLHSFELAM 327 (333)
T ss_pred CHHHHHHHHHHHHHHHCcCEE---EEECCCC--C-HHHHHHHHHHHH
Confidence 789999999999999999997 3443332 2 445555555443
No 194
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=26.58 E-value=4.5e+02 Score=23.18 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCC--------------------------cccEEEEecCCCCCCc--HHHHHHHHHHHHHcC
Q 023592 36 KMTSSIVRESIDVSRRRMDVP--------------------------CLDMLQFHWWDYSNPG--YLDALNHLTDLKEEG 87 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d--------------------------~iDl~~lH~~~~~~~~--~~~~~~~L~~l~~~G 87 (280)
+.+...++..++.-|+++++- ..|++.|..|....+. .+-+-+++.+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 567889999999999999853 3456666655333221 234556788999999
Q ss_pred CccEEEccCCCHHHHHHHHHc
Q 023592 88 KIKTVALTNFDTERLRIILEN 108 (280)
Q Consensus 88 kir~iGvs~~~~~~l~~~~~~ 108 (280)
. .|=+|+|.-+.++++.+.
T Consensus 181 a--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 A--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred C--EEEEecchHHHHHHHhhh
Confidence 8 788999999999999874
No 195
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=26.52 E-value=92 Score=27.65 Aligned_cols=48 Identities=15% Similarity=-0.055 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhcCCCcc--cEEEEecCCCCCCcHHHHHHHHHHHHHcCCccE
Q 023592 40 SIVRESIDVSRRRMDVPCL--DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKT 91 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~d~i--Dl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~ 91 (280)
+...+.+.+.+++||+.+- ..+.=+.+ .-...+.+.+++|.++|.|-.
T Consensus 82 ~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~----~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 82 EEMSGEHKEDFRRLGISYDWSDEYITTEP----EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHhCccccCCCCeECCCH----HHHHHHHHHHHHHHHCCCEEe
Confidence 5677888999999998442 23333322 124679999999999999754
No 196
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=26.42 E-value=1.5e+02 Score=24.37 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=46.6
Q ss_pred HHhhcCCCcccEEEEecCC-CCCCcHHHHHHHHHHHHHcCCccEEEcc-CCCHHHHHHHHHcCCCeeEeeeeccccccCh
Q 023592 49 SRRRMDVPCLDMLQFHWWD-YSNPGYLDALNHLTDLKEEGKIKTVALT-NFDTERLRIILENGIPVVSNQVQHSVVDMRP 126 (280)
Q Consensus 49 SL~~L~~d~iDl~~lH~~~-~~~~~~~~~~~~L~~l~~~Gkir~iGvs-~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~ 126 (280)
.+..+|+||+=+.+. |. +... ..+.+.++.+.-..+.+||. +.+.+.+.+.+. ...++++|++-+.
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S~R~v----~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~-~~~ld~vQLHG~e----- 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKSPRYV----SPDQARELVSAVPPKIVGVFVNQSPEEILEIVE-ELGLDVVQLHGDE----- 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB------HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHH-HCTESEEEE-SGG-----
T ss_pred HHHHcCCCEEeeecC--CCCCCcc----CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHH-HcCCCEEEECCCC-----
Confidence 456789999988643 32 2211 23445555555555588876 445677777776 4679999987664
Q ss_pred hhhHHHHHHHhCCeEE
Q 023592 127 QQKMAELCQLTGVKLI 142 (280)
Q Consensus 127 ~~~~~~~~~~~gi~vi 142 (280)
..+.....+ .++.++
T Consensus 82 ~~e~~~~l~-~~~~vi 96 (197)
T PF00697_consen 82 SPEYIKLLR-AGLPVI 96 (197)
T ss_dssp -HHHHHHHH-TTSEEE
T ss_pred CHHHHHHhh-cCceEE
Confidence 234444444 355555
No 197
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=26.24 E-value=60 Score=22.98 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc-CCccEEEccCCCHHHHHHHHHc-CCCeeEee
Q 023592 40 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE-GKIKTVALTNFDTERLRIILEN-GIPVVSNQ 116 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~-Gkir~iGvs~~~~~~l~~~~~~-~~~~~~~q 116 (280)
+.+=...+.....||....|+..+..-.++.. .+.+.+.|...++. |+ ..+...+..++.. +..+++.|
T Consensus 10 ~~LG~~W~~Lar~Lgls~~~I~~i~~~~p~~l-~eQv~~mL~~W~~r~G~-------~ATv~~L~~aL~~~~~~~~~~~ 80 (83)
T cd08319 10 QRLGPEWEQVLLDLGLSQTDIYRCKENHPHNV-QSQIVEALVKWRQRFGK-------KATVQSLIQSLKAVEVDPSVLQ 80 (83)
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhcCC-------CCcHHHHHHHHHHcCCCHHHHH
Confidence 34445667788899999999999887545443 57888999988875 43 4567777777764 55555444
No 198
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.12 E-value=5.1e+02 Score=23.65 Aligned_cols=77 Identities=18% Similarity=0.062 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHc-CC---ccEEEc--cCCCHHHHHHHHHc--CCCeeEeeeeccccccC-----hh---hhHHHHHHH
Q 023592 73 YLDALNHLTDLKEE-GK---IKTVAL--TNFDTERLRIILEN--GIPVVSNQVQHSVVDMR-----PQ---QKMAELCQL 136 (280)
Q Consensus 73 ~~~~~~~L~~l~~~-Gk---ir~iGv--s~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~-----~~---~~~~~~~~~ 136 (280)
..++++++.+..+. |+ +-|+=+ -|.+.+.+.++.+. +.++.++-++||+.... .. ..+.+..+.
T Consensus 225 l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L~~ 304 (344)
T PRK14464 225 PEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYLHR 304 (344)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHHHH
Confidence 57788888777654 32 112211 25677777777665 56788999999986432 12 356777888
Q ss_pred hCCeEEEeccccc
Q 023592 137 TGVKLITYGTVMG 149 (280)
Q Consensus 137 ~gi~via~spl~~ 149 (280)
+|+.+......+.
T Consensus 305 ~gi~~tiR~~~G~ 317 (344)
T PRK14464 305 RGVLTKVRNSAGQ 317 (344)
T ss_pred CCceEEEECCCCC
Confidence 9999998877755
No 199
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.02 E-value=2e+02 Score=27.65 Aligned_cols=84 Identities=11% Similarity=0.135 Sum_probs=53.6
Q ss_pred CcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-------CCCeeEeeeeccccccChhh
Q 023592 56 PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-------GIPVVSNQVQHSVVDMRPQQ 128 (280)
Q Consensus 56 d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-------~~~~~~~q~~~n~~~~~~~~ 128 (280)
|-||-+.|........ +.+.-+.+..|+++|-+.++.--| +....++.... ..+|++.|+.|++ ...
T Consensus 241 dGv~GI~Ls~~~~G~~-fk~fQ~~Ik~l~kqGVlLav~SKN-~~~da~evF~khp~MiLkeedfa~~~iNW~~----K~e 314 (574)
T COG3882 241 DGVDGIRLSNSAEGEA-FKTFQNFIKGLKKQGVLLAVCSKN-TEKDAKEVFRKHPDMILKEEDFAVFQINWDP----KAE 314 (574)
T ss_pred ccccceeecCCCCchh-HHHHHHHHHHHHhccEEEEEecCC-chhhHHHHHhhCCCeEeeHhhhhhheecCCc----chh
Confidence 3444455552222222 567778888999999998876555 34455555543 2346666666664 235
Q ss_pred hHHHHHHHhCCeEEEec
Q 023592 129 KMAELCQLTGVKLITYG 145 (280)
Q Consensus 129 ~~~~~~~~~gi~via~s 145 (280)
.+...|++.|+|.=++.
T Consensus 315 NirkIAkklNlg~dSmv 331 (574)
T COG3882 315 NIRKIAKKLNLGLDSMV 331 (574)
T ss_pred hHHHHHHHhCCCccceE
Confidence 78999999998877653
No 200
>PLN02444 HMP-P synthase
Probab=25.79 E-value=6.5e+02 Score=24.78 Aligned_cols=84 Identities=10% Similarity=0.052 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEe
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSN 115 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~ 115 (280)
+.+.+.+.+.+++..+. -+|++-+|.- -..+.++.++ + |..|+-+-...-+.......
T Consensus 296 ~lt~d~~~d~ieeQaeq----GVDfmTIH~G--------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~------ 353 (642)
T PLN02444 296 NLTWEVFRETLIEQAEQ----GVDYFTIHAG--------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAY------ 353 (642)
T ss_pred hCCHHHHHHHHHHHHHh----CCCEEEEChh--------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHc------
Confidence 56778888888877764 5677899962 1334455554 3 77888887777666665431
Q ss_pred eeeccccccChhhhHHHHHHHhCCeEEE
Q 023592 116 QVQHSVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 116 q~~~n~~~~~~~~~~~~~~~~~gi~via 143 (280)
-.=|++.... +++++.|++++|.+.-
T Consensus 354 -~kENPlYe~F-D~ileI~k~YDVtlSL 379 (642)
T PLN02444 354 -HKENFAYEHW-DDILDICNQYDIALSI 379 (642)
T ss_pred -CCcCchHHHH-HHHHHHHHHhCeeeec
Confidence 1224554444 4899999999999873
No 201
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=25.66 E-value=2.5e+02 Score=22.20 Aligned_cols=79 Identities=14% Similarity=0.197 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH--cCCccEEEccCCCHHHHHHHHHcCCCee
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVV 113 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~~~~ 113 (280)
..+.+.+.+.|.+--+.+|+ .++++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.+.++++. ...-
T Consensus 25 ~~tl~~i~~~~~~~a~~~g~-~v~~~QSN~-------EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~-~~~P 95 (146)
T PRK05395 25 STTLADIEALLEEEAAELGV-ELEFFQSNH-------EGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAA-VSIP 95 (146)
T ss_pred CCCHHHHHHHHHHHHHHcCC-EEEEEeeCc-------HHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHc-CCCC
Confidence 34789999999999999997 466666442 2577777777753 45555556667888889999884 4444
Q ss_pred Eeeeeccccc
Q 023592 114 SNQVQHSVVD 123 (280)
Q Consensus 114 ~~q~~~n~~~ 123 (280)
++.+..+-.+
T Consensus 96 ~VEVHiSNi~ 105 (146)
T PRK05395 96 VIEVHLSNIH 105 (146)
T ss_pred EEEEecCCcc
Confidence 5666665443
No 202
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=25.51 E-value=38 Score=32.12 Aligned_cols=54 Identities=11% Similarity=0.138 Sum_probs=32.3
Q ss_pred CCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCe
Q 023592 87 GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVK 140 (280)
Q Consensus 87 Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 140 (280)
+.+|++|+..++.+.+.++......-+.++.+..++-...+.++++.|++.||.
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~~~~~y~~~~~~~ldp~dp~v~~~A~~~gi~ 317 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTENEKDLYHRQLDVFLDPNDPEVIAQAKKDGIP 317 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhcccchhHHHHhhceecCCCCHHHHHHHHHcCCC
Confidence 578999999888888877776422234444444444333344555555555553
No 203
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=25.43 E-value=1.5e+02 Score=24.98 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=35.4
Q ss_pred HcCCCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhhc
Q 023592 204 KHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM 246 (280)
Q Consensus 204 ~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~~ 246 (280)
+.+.|-.++|+.+++.++.-..++.|..-++.+|+-.|+.-+-
T Consensus 74 eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~nl~ll~ 116 (212)
T COG1564 74 EKDSTDLELALDEALERGADEIVILGALGGRLDHALANLFLLL 116 (212)
T ss_pred hhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHHH
Confidence 3356888999999999999888889888778999888886553
No 204
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=25.38 E-value=3.6e+02 Score=23.03 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCC--------------------------cccEEEEecCCCCCC--cHHHHHHHHHHHHHcC
Q 023592 36 KMTSSIVRESIDVSRRRMDVP--------------------------CLDMLQFHWWDYSNP--GYLDALNHLTDLKEEG 87 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d--------------------------~iDl~~lH~~~~~~~--~~~~~~~~L~~l~~~G 87 (280)
+.+...+++.+++.-++|+.+ ..+++.+..|....+ ....+-+.+.+++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 345677788888888888753 334555555543333 1256788999999999
Q ss_pred CccEEEccCCCHHHHHHHHH
Q 023592 88 KIKTVALTNFDTERLRIILE 107 (280)
Q Consensus 88 kir~iGvs~~~~~~l~~~~~ 107 (280)
+ .+=+|+|.-++++++.+
T Consensus 184 r--~viFSSH~m~EvealCD 201 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCD 201 (245)
T ss_pred c--EEEEecccHHHHHHhhh
Confidence 8 68899999999988876
No 205
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=25.37 E-value=3e+02 Score=21.59 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH--cCCccEEEccCCCHHHHHHHHHcCCCee
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVV 113 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~~~~ 113 (280)
..+.+.+++.|.+--+.+|+ .+|++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.+.++++. ...-
T Consensus 24 ~~tl~~i~~~~~~~a~~~g~-~v~~~QSN~-------EGelid~I~~a~~~~dgiIINpga~thtS~Ai~DAl~~-~~~P 94 (140)
T PF01220_consen 24 TTTLEDIEQKCKETAAELGV-EVEFFQSNH-------EGELIDWIHEARDDVDGIIINPGAYTHTSIAIRDALKA-ISIP 94 (140)
T ss_dssp SSHHHHHHHHHHHHHHHTTE-EEEEEE-SS-------HHHHHHHHHHHTCTTSEEEEE-GGGGHT-HHHHHHHHC-CTS-
T ss_pred cCCHHHHHHHHHHHHHHCCC-eEEEEecCC-------HHHHHHHHHHHHhhCCEEEEccchhccccHHHHHHHHc-CCCC
Confidence 34778999999999999987 466666442 3678888888864 57777778888999999999985 3444
Q ss_pred Eeeeeccccc
Q 023592 114 SNQVQHSVVD 123 (280)
Q Consensus 114 ~~q~~~n~~~ 123 (280)
++.+..+-.+
T Consensus 95 ~vEVHiSNi~ 104 (140)
T PF01220_consen 95 VVEVHISNIH 104 (140)
T ss_dssp EEEEESS-GG
T ss_pred EEEEEcCCcc
Confidence 5666665443
No 206
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=25.34 E-value=2.5e+02 Score=25.56 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCcc-EEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHHHHHhCCeEEEecccccc
Q 023592 77 LNHLTDLKEEGKIK-TVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 77 ~~~L~~l~~~Gkir-~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~via~spl~~G 150 (280)
++.+.+|++...+. ..|=+.++...+..++.. ...+++|+....+-.- .-..+...|+.+|+.++..+.+.+|
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKA-SAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-CCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 56677777776555 677778888888888874 3377788766653211 1346889999999999877655444
No 207
>PRK00588 rnpA ribonuclease P; Reviewed
Probab=25.23 E-value=3e+02 Score=20.72 Aligned_cols=64 Identities=8% Similarity=-0.106 Sum_probs=41.6
Q ss_pred CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCC---CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 20 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDV---PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~---d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
+|=-+.|+-|+|.. .....++..+.++...+.- ..-|++.+..+.....++.++.+.|+.+.+.
T Consensus 43 ~R~G~~VsKKvG~A---V~RNRiKR~lRE~~R~~~~~l~~~~~vVviaR~~~~~~~~~~l~~~l~~ll~~ 109 (118)
T PRK00588 43 PRVGLIIAKSVGSA---VERHRVARRLRHVARPILKELHPSDRVVIRALPSSRHVSSARLEQQLRCGLRR 109 (118)
T ss_pred CEEEEEEeeecCch---hHHHHHHHHHHHHHHHhhhccCCCCEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 45567788888753 2456666666666665532 3446666688766666678888888777655
No 208
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=25.09 E-value=33 Score=22.24 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhhc
Q 023592 197 TLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFM 246 (280)
Q Consensus 197 ~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~~ 246 (280)
...++|+..|++...+ -+|.-... ++.+.+.|.....+++
T Consensus 12 t~~~La~~~gis~~tl-~~~~~~~~---------~~~~~~~l~~ia~~l~ 51 (63)
T PF13443_consen 12 TQKDLARKTGISRSTL-SRILNGKP---------SNPSLDTLEKIAKALN 51 (63)
T ss_dssp -HHHHHHHHT--HHHH-HHHHTTT--------------HHHHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHH-HHHHhccc---------ccccHHHHHHHHHHcC
Confidence 4456666666666542 23333221 1115777777777776
No 209
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=25.06 E-value=6.1e+02 Score=24.23 Aligned_cols=108 Identities=17% Similarity=0.151 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH----cCCccEEEc--cCCCHHHHHHHHHcCC
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE----EGKIKTVAL--TNFDTERLRIILENGI 110 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~----~Gkir~iGv--s~~~~~~l~~~~~~~~ 110 (280)
.+.+.|.+.++. +...|...+-|+. .-++....++-+.+.++.+++ .|.++.+++ ...+.+++..+.+.|+
T Consensus 115 Ls~EEI~~ea~~-~~~~G~~~i~Lvs--Ge~p~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaGv 191 (469)
T PRK09613 115 LTQEEIREEVKA-LEDMGHKRLALVA--GEDPPNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAGI 191 (469)
T ss_pred CCHHHHHHHHHH-HHHCCCCEEEEEe--CCCCCCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcCC
Confidence 478999999975 5778887776542 222122225666667777765 466766665 4667788888888765
Q ss_pred C-eeEeeeecccc-----cc-----Chh--hhHHHHHHHhCCeEEEeccc
Q 023592 111 P-VVSNQVQHSVV-----DM-----RPQ--QKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 111 ~-~~~~q~~~n~~-----~~-----~~~--~~~~~~~~~~gi~via~spl 147 (280)
. ..+.|=-||.- +. ..+ -+.++.+++.||.-++.+.+
T Consensus 192 ~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L 241 (469)
T PRK09613 192 GTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVL 241 (469)
T ss_pred CEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEE
Confidence 4 56677666521 11 111 24677888889874544333
No 210
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=24.90 E-value=6.7e+02 Score=24.60 Aligned_cols=85 Identities=9% Similarity=0.044 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeE
Q 023592 35 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVS 114 (280)
Q Consensus 35 ~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~ 114 (280)
.+.+.+.+.+.+++..+. -+|++-+|.- -.++.++.++ + |..|+-+-...-+.......
T Consensus 290 ~~lt~e~~~d~ieeQAeq----GVDf~TIHaG--------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h----- 348 (607)
T PRK09284 290 EDLTWEIFRDTLIEQAEQ----GVDYFTIHAG--------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAH----- 348 (607)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEChh--------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHc-----
Confidence 466888888888888774 5677999962 1334444454 3 77898888887777666531
Q ss_pred eeeeccccccChhhhHHHHHHHhCCeEEE
Q 023592 115 NQVQHSVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 115 ~q~~~n~~~~~~~~~~~~~~~~~gi~via 143 (280)
-.=|+++..+ +++++.|++++|.+.-
T Consensus 349 --~kENplYe~F-D~ileI~k~YDVtlSL 374 (607)
T PRK09284 349 --HKENFLYTHF-EEICEIMAAYDVSFSL 374 (607)
T ss_pred --CCcCcHHHHH-HHHHHHHHHhCeeeec
Confidence 1224544343 4899999999999873
No 211
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=24.88 E-value=3.7e+02 Score=24.76 Aligned_cols=64 Identities=17% Similarity=0.096 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCccEEEccCCCHHHHHHHHH-c-CCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEe
Q 023592 77 LNHLTDLKEEGKIKTVALTNFDTERLRIILE-N-GIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITY 144 (280)
Q Consensus 77 ~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~-~-~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~ 144 (280)
..++.+|.+.|.+.+|-.-. -.+.-+.+.. . ...+. -.|.......-+.+++.|+++||.||.-
T Consensus 12 ~~a~~~l~~~g~~d~l~~d~-LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 12 PDAAVRLARGGDVDYLVGDY-LAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHHhcCCCCEEEEec-HHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEe
Confidence 44566666777777775542 2222111111 1 00111 1133221222356788888888888864
No 212
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=24.81 E-value=1.7e+02 Score=21.58 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcC
Q 023592 43 RESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEG 87 (280)
Q Consensus 43 ~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~G 87 (280)
+..+.+.++.+. -.|.+++++.+.-.....+.+..++.+.+.|
T Consensus 42 R~~~~~ll~~~~--~~d~lvv~~~dRl~R~~~e~~~~~~~l~~~g 84 (126)
T cd03768 42 RPELQKLLEDLR--EGDTLVVTKLDRLGRSTKDLLEIVEELREKG 84 (126)
T ss_pred CHHHHHHHHhCc--CCCEEEEEEcchhcCcHHHHHHHHHHHHHCC
Confidence 445555555554 5788888887766555567777777777765
No 213
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=24.72 E-value=5.9e+02 Score=25.48 Aligned_cols=69 Identities=17% Similarity=0.346 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCH--HHHHHHHHcCCCeeEeeeecccccc--------ChhhhHHHHHHHhCCeEE
Q 023592 73 YLDALNHLTDLKEEGKIKTVALTNFDT--ERLRIILENGIPVVSNQVQHSVVDM--------RPQQKMAELCQLTGVKLI 142 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs~~~~--~~l~~~~~~~~~~~~~q~~~n~~~~--------~~~~~~~~~~~~~gi~vi 142 (280)
...+...+..|++.|- .+++.+++. ..+..+. ..+++++-+.-+++.. ..-+.++.+|++.||.||
T Consensus 677 ~~~~~~~l~~l~~~G~--~i~ld~fg~~~~~~~~l~--~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi 752 (799)
T PRK11359 677 DTEIFKRIQILRDMGV--GLSVDDFGTGFSGLSRLV--SLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV 752 (799)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHh--hCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE
Confidence 5678889999999998 788887664 3444433 3456766666654321 113568899999999999
Q ss_pred Eec
Q 023592 143 TYG 145 (280)
Q Consensus 143 a~s 145 (280)
+-.
T Consensus 753 a~g 755 (799)
T PRK11359 753 AEG 755 (799)
T ss_pred EEc
Confidence 854
No 214
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.67 E-value=5.4e+02 Score=23.48 Aligned_cols=90 Identities=9% Similarity=0.062 Sum_probs=57.9
Q ss_pred EEEEecCCCC----------CCcHHHHHHHHHHHHHcC-C-c--cEEEc--cCCCHHHHHHHHHc--CCCeeEeeeeccc
Q 023592 60 MLQFHWWDYS----------NPGYLDALNHLTDLKEEG-K-I--KTVAL--TNFDTERLRIILEN--GIPVVSNQVQHSV 121 (280)
Q Consensus 60 l~~lH~~~~~----------~~~~~~~~~~L~~l~~~G-k-i--r~iGv--s~~~~~~l~~~~~~--~~~~~~~q~~~n~ 121 (280)
.+.||.|+.. ...++++++++.+..++. + | -|+=+ -|.+.+++.++.+. +.+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 5788976422 112678888888866542 2 1 11222 26677777777665 6668899999997
Q ss_pred ccc----Ch-h---hhHHHHHHHhCCeEEEeccccc
Q 023592 122 VDM----RP-Q---QKMAELCQLTGVKLITYGTVMG 149 (280)
Q Consensus 122 ~~~----~~-~---~~~~~~~~~~gi~via~spl~~ 149 (280)
... .+ . ..+.+..+++|+.+......+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 432 11 1 3456778889999998877655
No 215
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.66 E-value=4.7e+02 Score=22.75 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=58.9
Q ss_pred EeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHH----Hc-CC-ccEEEccCCCH-
Q 023592 27 LTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK----EE-GK-IKTVALTNFDT- 99 (280)
Q Consensus 27 ~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~----~~-Gk-ir~iGvs~~~~- 99 (280)
.|+.+.+....+.+.++.-++.|++.|.-. |. +..+++.|..-. +- -+ |+-+|+.++..
T Consensus 31 ~~dt~iD~~~v~~~~fq~klensr~kle~S--~F------------l~~~lEqLq~~l~~~~~piek~~vclglG~f~~~ 96 (281)
T KOG3131|consen 31 ESDTLIDCPDVNVEKFQPKLENSRTKLEQS--DF------------LLVALEQLQQQLEGIRKPIEKIIVCLGLGPFSRT 96 (281)
T ss_pred ccccccCcccccHHHHHHHHHHHHHHHHHH--HH------------HHHHHHHHhHHHhhhccchhheEEEEeecccccc
Confidence 555555556667888999999999998521 11 122222222221 11 24 48899887763
Q ss_pred ----HHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccccc
Q 023592 100 ----ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMG 149 (280)
Q Consensus 100 ----~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~ 149 (280)
-++.-++...-.|...-...+++|.-...+=.++.+..|--|+.-.+.+.
T Consensus 97 ~~a~~Qlal~iei~r~fk~~~~~~s~fDPvf~k~E~eyLeslG~cvLs~~e~~~ 150 (281)
T KOG3131|consen 97 YHALHQLALVIEIHRHFKIRDVEASYFDPVFRKSEKEYLESLGGCVLSKDEAGK 150 (281)
T ss_pred ccHHHHHHHHHHHHHHhccccceeeeeCcchhhhHHHHHHhcCCeEeccCcccc
Confidence 23333333311122222333444433344557788888888887666544
No 216
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=24.54 E-value=3.5e+02 Score=23.64 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=53.5
Q ss_pred HHHHHHhhcCCCcccEEEEecCC----------CCCCcHHHH-HHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCee
Q 023592 45 SIDVSRRRMDVPCLDMLQFHWWD----------YSNPGYLDA-LNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVV 113 (280)
Q Consensus 45 ~i~~SL~~L~~d~iDl~~lH~~~----------~~~~~~~~~-~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~ 113 (280)
.+++.+ .++.+|.+++--.| .+.+.+.++ -+..+.+++.|| .+|+...+.+.....++.|.++.
T Consensus 160 n~~~I~---~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~~~~~~~~a~~~~~~G~~~v 234 (267)
T PRK10128 160 NLDEIL---DVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGK--AAGFLAVDPDMAQKCLAWGANFV 234 (267)
T ss_pred hHHHHh---CCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEEcCCCHHHHHHHHHcCCcEE
Confidence 344444 46889999987432 222323332 233444677788 57877778888888888788898
Q ss_pred EeeeeccccccChhhhHHHHHH
Q 023592 114 SNQVQHSVVDMRPQQKMAELCQ 135 (280)
Q Consensus 114 ~~q~~~n~~~~~~~~~~~~~~~ 135 (280)
++.....++.+.. ...+...+
T Consensus 235 ~~g~D~~~l~~~~-~~~~~~~~ 255 (267)
T PRK10128 235 AVGVDTMLYTDAL-DQRLAMFK 255 (267)
T ss_pred EEChHHHHHHHHH-HHHHHHHh
Confidence 8888888774333 33444443
No 217
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=24.48 E-value=3e+02 Score=20.52 Aligned_cols=63 Identities=11% Similarity=0.042 Sum_probs=40.5
Q ss_pred CCCeEEEee-ccCCCCCCCHHHHHHHHHHHHhhcCC--CcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 21 QSSWISLTK-WVPPPVKMTSSIVRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 21 R~~~~I~tK-~~~~~~~~~~~~i~~~i~~SL~~L~~--d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
|=-+.|+-| ++.. .....+++.+.++.+.... ...|++++-.+.....++.++.+.|..+.+.
T Consensus 46 R~G~~VsKK~~g~A---V~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 46 RLGLTVAKKNVKRA---HERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred EEEEEEEcccCcch---hHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 334556666 4432 2455666666666664331 3569999998877666688888888877654
No 218
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=24.47 E-value=5.2e+02 Score=23.67 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-------
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN------- 108 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~------- 108 (280)
.++++.++.-|.+.|.+.|++- ..-..+-+.|- .. -..|+.+|....+...++.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~e-------------e~A~~vA~~lv---~a---d~~G~~SHGv~r~p~yi~~l~~G~i~ 65 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPE-------------EDARAVADVLV---AA---DLRGVDSHGVGRLPGYVRRLKAGKIN 65 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCH-------------HHHHHHHHHHH---HH---HhcCCcccchHHHHHHHHHHHcCCcC
Confidence 3578999999999999998732 10122222222 11 1368888988888777664
Q ss_pred -CCCeeEeeeeccc--ccc----------ChhhhHHHHHHHhCCeEEEe
Q 023592 109 -GIPVVSNQVQHSV--VDM----------RPQQKMAELCQLTGVKLITY 144 (280)
Q Consensus 109 -~~~~~~~q~~~n~--~~~----------~~~~~~~~~~~~~gi~via~ 144 (280)
.-.|.+++.-=.. +|- ..-+..++.|+++||++++-
T Consensus 66 ~~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav 114 (349)
T COG2055 66 PDAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAV 114 (349)
T ss_pred CCCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEE
Confidence 1123333221111 111 01256899999999999873
No 219
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=24.39 E-value=3.7e+02 Score=24.36 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=40.7
Q ss_pred ccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccCh-hhhHHHHHHHhCCeEEEeccccccc
Q 023592 89 IKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGL 151 (280)
Q Consensus 89 ir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G~ 151 (280)
++..-+...+.+.+++++..+.+..++..+.|+..... -+++.+.|+++|+.++.=.+++.+.
T Consensus 116 ~~v~~vd~~d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 116 VRFVYVNTASLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred ceEEEECCCCHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 34444444566777777653445666777888753222 3578999999999998766664443
No 220
>PRK08609 hypothetical protein; Provisional
Probab=24.34 E-value=5.2e+02 Score=25.35 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=44.1
Q ss_pred CCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccC------CC--H---HHHHHH-HHcCCCeeEeeeecccc
Q 023592 55 VPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN------FD--T---ERLRII-LENGIPVVSNQVQHSVV 122 (280)
Q Consensus 55 ~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~------~~--~---~~l~~~-~~~~~~~~~~q~~~n~~ 122 (280)
.||+ +.-+|++.. .+ ..++++.+.++.+.|.+.-||=-. .. . +.+.++ .+.+. ++|++-+.+
T Consensus 429 ~D~v-I~SvH~~~~-~~-~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~---~lEINa~~~ 502 (570)
T PRK08609 429 LDYV-IAAIHSSFS-QS-EEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNT---ALELNANPN 502 (570)
T ss_pred hCEE-EEEeecCCC-CC-HHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCC---EEEEcCCcc
Confidence 4555 666776422 22 356777888888888777666332 11 1 222222 22233 333333333
Q ss_pred ccChhhhHHHHHHHhCCeEE
Q 023592 123 DMRPQQKMAELCQLTGVKLI 142 (280)
Q Consensus 123 ~~~~~~~~~~~~~~~gi~vi 142 (280)
.......++..|.+.|+.++
T Consensus 503 r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 503 RLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred ccCccHHHHHHHHHcCCEEE
Confidence 23344578888888888654
No 221
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=24.29 E-value=1.8e+02 Score=26.03 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcc-cEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc
Q 023592 38 TSSIVRESIDVSRRRMDVPCL-DMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN 108 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~i-Dl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~ 108 (280)
......+++.+.|+.||.++= ..|+ . ....+.-.+++++|+++|++ |...| +.+++.+....
T Consensus 48 ~~~~~~~~i~~~L~wlGl~~D~~~~~-Q-----S~r~~~Y~~~~~~L~~~g~a-Y~C~C--sr~~l~~~r~~ 110 (314)
T PF00749_consen 48 CRPEFYDAILEDLRWLGLEWDYGPYY-Q-----SDRLEIYQEAAEKLIDKGKA-YPCFC--SREELKAAREA 110 (314)
T ss_dssp CHHHHHHHHHHHHHHHT---STCEEE-G-----GGGHHHHHHHHHHHHHTTSE-EEEES--EHHHHHHHHHH
T ss_pred chhhHHHHHHhheeEEEEecCCeEEe-H-----HHHHHHHHHHHHHHhhcCCC-ccccC--CHHHHHHHHHH
Confidence 457888999999999998763 2222 1 22256677889999999997 66666 67777776643
No 222
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=24.29 E-value=4.3e+02 Score=22.14 Aligned_cols=20 Identities=0% Similarity=0.029 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHhhcCCC
Q 023592 37 MTSSIVRESIDVSRRRMDVP 56 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d 56 (280)
.+.+.+++++...|+.||.|
T Consensus 17 ~d~~~~~~av~~iL~alGeD 36 (201)
T PRK12606 17 FDPPALEAAVRELLEALGED 36 (201)
T ss_pred cCHHHHHHHHHHHHHHhCCC
Confidence 46688999999999999974
No 223
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=24.19 E-value=1e+02 Score=27.50 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCc
Q 023592 40 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI 89 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gki 89 (280)
+...+.+.+.+++||++ .|.+.-.. +......+.+.+++|+++|.+
T Consensus 69 ~~~~~~~~~~l~~LgI~-~D~~~~tt---~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 69 DKYHEIFKDLFKWLNIS-FDYFIRTT---SPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHcCCc-CCCCeeCC---CHHHHHHHHHHHHHHHHCCCE
Confidence 56677889999999996 57543321 111135678899999999998
No 224
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=24.11 E-value=3.4e+02 Score=21.33 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHH--cCCccEEEccCCCHHHHHHHHHcCCCee
Q 023592 36 KMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKE--EGKIKTVALTNFDTERLRIILENGIPVV 113 (280)
Q Consensus 36 ~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~--~Gkir~iGvs~~~~~~l~~~~~~~~~~~ 113 (280)
..+.+.+.+.+++--+.+|+ .++++|-.. -.++++.+.+..+ +|.|-.=|--+|+.-.+.+++.. ...-
T Consensus 23 ~~tl~di~~~~~~~a~~~g~-~v~~~QSN~-------EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~-~~~P 93 (141)
T TIGR01088 23 SQTLEEIVEIIETFAAQLNV-ELEFFQSNS-------EGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAA-VSLP 93 (141)
T ss_pred CCCHHHHHHHHHHHHHHcCC-EEEEEeeCc-------HHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHc-CCCC
Confidence 34789999999999999997 366665432 2577777877754 46666667778888899999884 3444
Q ss_pred Eeeeecccc
Q 023592 114 SNQVQHSVV 122 (280)
Q Consensus 114 ~~q~~~n~~ 122 (280)
++.+..+-.
T Consensus 94 ~vEVHiSNi 102 (141)
T TIGR01088 94 VVEVHLSNV 102 (141)
T ss_pred EEEEEcCCc
Confidence 556665543
No 225
>PLN02907 glutamate-tRNA ligase
Probab=24.11 E-value=2.8e+02 Score=28.17 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHH
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIIL 106 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~ 106 (280)
......++|.+.|+.||.++ |-. ....+.++...+..++|+++|+. + ++..+.+++.+..
T Consensus 260 ~~~e~~~~I~~dl~wLG~~~-d~~-----~~qS~r~~~y~~~a~~Li~~G~a--Y-~~~~~~~~~~~~~ 319 (722)
T PLN02907 260 ESDEFVENILKDIETLGIKY-DAV-----TYTSDYFPQLMEMAEKLIKEGKA--Y-VDDTPREQMRKER 319 (722)
T ss_pred CChHHHHHHHHHHHHcCCCC-CCc-----ccccccHHHHHHHHHHHHHcCCe--e-ecCCCHHHHHHHH
Confidence 34678899999999999987 522 12233367889999999999995 3 3666777776654
No 226
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=23.37 E-value=1.8e+02 Score=21.78 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCcc
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK 90 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir 90 (280)
+...+..-+.+.++.-....+-=-.+-.|+..-. ..+-++.|.+|+++||+.
T Consensus 54 d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGL-s~E~IE~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 54 DRSSFFKRFKFALKTEDGSALTGEKIISTDAEGL-SKEDIEKLKKLVEEGKIE 105 (110)
T ss_pred ecccHHHHHHHHHHhcccccccCCeEEeccccCC-CHHHHHHHHHHHHcCCCc
Confidence 4466777777777766665542223344555444 578999999999999985
No 227
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=23.19 E-value=1.6e+02 Score=24.11 Aligned_cols=51 Identities=12% Similarity=0.115 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccC
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN 96 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~ 96 (280)
+...+++++-++ .-+|++++....... ..+-+..|+++..+|++|++-+.-
T Consensus 65 de~~f~~~L~e~-------sn~l~lv~~~~rNp~-S~~hvq~l~~l~nqg~Lr~~nLG~ 115 (173)
T PF10171_consen 65 DEQSFEDALLEA-------SNDLLLVSPAIRNPT-SDKHVQRLMRLRNQGRLRYLNLGL 115 (173)
T ss_pred CHHHHHHHHHHH-------hCceeccChhhcCch-HHHHHHHHHHHhcCCceEEeeeee
Confidence 344555554443 445667775544333 578899999999999999986653
No 228
>COG3828 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.99 E-value=88 Score=26.12 Aligned_cols=32 Identities=25% Similarity=0.632 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCccccCCCccccc
Q 023592 248 SLDEDDVNSIQEVTKKGKDLLGVIGDCGDEYR 279 (280)
Q Consensus 248 ~Lt~e~~~~l~~~~~~~~~~~~~~~~~~~~~~ 279 (280)
+++.|+++.|.+..+.+.+..++||.-||.+|
T Consensus 64 ~I~ke~~q~i~aaiesG~G~aG~Hg~~~D~fr 95 (239)
T COG3828 64 TIEKEEVQNITAAIESGVGFAGFHGGMGDAFR 95 (239)
T ss_pred cCcHHHHHHHHHHHHcCCceeeeccccccccC
Confidence 78999999999999999999888888888877
No 229
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=22.95 E-value=3.9e+02 Score=24.43 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=45.1
Q ss_pred HHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccCh-hhhHHHHHHHhCCeEEEeccccccc
Q 023592 76 ALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMRP-QQKMAELCQLTGVKLITYGTVMGGL 151 (280)
Q Consensus 76 ~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~via~spl~~G~ 151 (280)
+...+..+.+.--++..-+...+.+.++++++.+.+..++..+.|+.-.-. -+++.+.|+++|+-++.=..++.|.
T Consensus 98 ~~~~~~~~~~~~G~~v~~vd~~d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~ 174 (378)
T TIGR01329 98 TDRLLTQVVPRSGVVVVHVDTTDLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPL 174 (378)
T ss_pred HHHHHHHHHHHcCcEEEEeCCCCHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 333344433332333333443467777777653455677777777643222 3578999999999999766655443
No 230
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=22.82 E-value=5.4e+02 Score=24.40 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCC--C-cHHHHHHHHHHHHHc-CCccE---------EEccCCCHHH--
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSN--P-GYLDALNHLTDLKEE-GKIKT---------VALTNFDTER-- 101 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~--~-~~~~~~~~L~~l~~~-Gkir~---------iGvs~~~~~~-- 101 (280)
++.+.... +-+.|.++|++.|.+. +....+. . ..++-|+.+..+++. ..++. +|.+++..+.
T Consensus 23 ~~t~dkl~-ia~~Ld~~Gv~~IE~~--ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 23 MTTEEMLP-ILEKLDNAGYHSLEMW--GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred cCHHHHHH-HHHHHHHcCCCEEEec--CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHH
Confidence 44454444 5555899999999993 1110100 0 012346666666655 22332 4565554443
Q ss_pred --HHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEE
Q 023592 102 --LRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 102 --l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via 143 (280)
++.+.+.+.+ ++.+...+-+-..-...++++++.|..+.+
T Consensus 100 ~~v~~A~~~Gvd--~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 100 SFVQKSVENGID--IIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHCCCC--EEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 3444554544 333333332222234688999999976643
No 231
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=22.68 E-value=2.1e+02 Score=23.50 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=24.3
Q ss_pred cccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHH
Q 023592 57 CLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERL 102 (280)
Q Consensus 57 ~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l 102 (280)
.+|.++||..+ + .+.+..+.+......++.+|++++....+
T Consensus 73 ~~d~Vqlhg~e---~--~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDE---S--PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCC---C--HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 46788999743 1 12233333333346788899997765443
No 232
>PRK02399 hypothetical protein; Provisional
Probab=22.59 E-value=2.5e+02 Score=26.22 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccc
Q 023592 44 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVD 123 (280)
Q Consensus 44 ~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~ 123 (280)
.++++..++|.-...|.+.+|---. .. ++||+|.++|.+. ||=..+..++-..+-.++ +
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~--GG-----raME~Li~~G~~~--gVlDlTttEv~d~l~GGv-----------~- 257 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGT--GG-----RAMEKLIDSGLIA--GVLDLTTTEVCDELFGGV-----------L- 257 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCC--ch-----HHHHHHHHcCCce--EEEEcchHHHHHHHhCcC-----------c-
Confidence 3444555555445579999996322 21 4899999999975 555556555444443221 1
Q ss_pred cChhhhHHHHHHHhCCeEE
Q 023592 124 MRPQQKMAELCQLTGVKLI 142 (280)
Q Consensus 124 ~~~~~~~~~~~~~~gi~vi 142 (280)
....+-+..+.+.||+.|
T Consensus 258 -sagp~Rl~Aa~~~gIP~V 275 (406)
T PRK02399 258 -AAGPDRLEAAARTGIPQV 275 (406)
T ss_pred -cCCccHHHHHHHcCCCEE
Confidence 122356777888888777
No 233
>PRK10060 RNase II stability modulator; Provisional
Probab=22.47 E-value=7.1e+02 Score=24.71 Aligned_cols=116 Identities=12% Similarity=0.160 Sum_probs=68.7
Q ss_pred CeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCC-CCCcHHHHHHHHHHHHHcCCccEEEccCCCH--
Q 023592 23 SWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDY-SNPGYLDALNHLTDLKEEGKIKTVALTNFDT-- 99 (280)
Q Consensus 23 ~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~-~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~-- 99 (280)
.+.|+-.+.+. .+....+...+.+.|++.+.+- ..+.+-=... .......+.+.+.+|++.|- .+++.+|+.
T Consensus 492 ~~~i~vNls~~--~l~~~~~~~~l~~~l~~~~~~~-~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ 566 (663)
T PRK10060 492 NLRVAVNVSAR--QLADQTIFTALKQALQELNFEY-CPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGY 566 (663)
T ss_pred CeEEEEEcCHH--HhCCCcHHHHHHHHHHHHCcCc-ceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCch
Confidence 44555555431 1122456667777777776542 2222221111 11224678889999999998 677777763
Q ss_pred HHHHHHHHcCCCeeEeeeecccccc--------ChhhhHHHHHHHhCCeEEEec
Q 023592 100 ERLRIILENGIPVVSNQVQHSVVDM--------RPQQKMAELCQLTGVKLITYG 145 (280)
Q Consensus 100 ~~l~~~~~~~~~~~~~q~~~n~~~~--------~~~~~~~~~~~~~gi~via~s 145 (280)
..+..+.. .+++.+-+.-+++.. ..-+.++.+|+..|+.|||=.
T Consensus 567 ssl~~L~~--l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeG 618 (663)
T PRK10060 567 SSLSQLAR--FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEG 618 (663)
T ss_pred hhHHHHHh--CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEec
Confidence 44444443 456666666544321 123568999999999999854
No 234
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.35 E-value=6e+02 Score=23.15 Aligned_cols=77 Identities=18% Similarity=0.165 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcC--C--ccEEEcc--CCCHHHHHHHHHc--CCCeeEeeeeccccccC----h----hhhHHHHHHH
Q 023592 73 YLDALNHLTDLKEEG--K--IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSVVDMR----P----QQKMAELCQL 136 (280)
Q Consensus 73 ~~~~~~~L~~l~~~G--k--ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~~~~~----~----~~~~~~~~~~ 136 (280)
.+++++++.+..+.+ + ++++=+. |.+.+.+.++.+. +.+..+.-++||+.... + -..+....++
T Consensus 233 l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~~~~~~~~ps~e~i~~f~~~L~~ 312 (349)
T PRK14463 233 LAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEHEGCDFRSPTQEAIDRFHKYLLD 312 (349)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 466777777766654 2 2344444 4556777777665 55667888999986421 1 1345667888
Q ss_pred hCCeEEEeccccc
Q 023592 137 TGVKLITYGTVMG 149 (280)
Q Consensus 137 ~gi~via~spl~~ 149 (280)
+||.+......+.
T Consensus 313 ~gi~v~vR~~~G~ 325 (349)
T PRK14463 313 KHVTVITRSSRGS 325 (349)
T ss_pred CCceEEEeCCCCc
Confidence 9999999877654
No 235
>PRK06740 histidinol-phosphatase; Validated
Probab=22.20 E-value=5.8e+02 Score=22.97 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCC---CCCc-------------HHHHHHHHHHHHHcCCccEEEcc------CCC---
Q 023592 44 ESIDVSRRRMDVPCLDMLQFHWWDY---SNPG-------------YLDALNHLTDLKEEGKIKTVALT------NFD--- 98 (280)
Q Consensus 44 ~~i~~SL~~L~~d~iDl~~lH~~~~---~~~~-------------~~~~~~~L~~l~~~Gkir~iGvs------~~~--- 98 (280)
..+++.|+....||+ +..+|..+. ..+. ...-.+.+.++.+.|.+..||=- ++.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 456667777778888 888997531 1111 12245788888899998888722 111
Q ss_pred ---HHHHHHHHHc----CCCeeEeee-ecc--ccccChhhhHHHHHHHhCCeEEE
Q 023592 99 ---TERLRIILEN----GIPVVSNQV-QHS--VVDMRPQQKMAELCQLTGVKLIT 143 (280)
Q Consensus 99 ---~~~l~~~~~~----~~~~~~~q~-~~n--~~~~~~~~~~~~~~~~~gi~via 143 (280)
...+.++++. +..+.++-. .+. .-..-+...++..|++.|+.|+.
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tl 289 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITL 289 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEE
Confidence 1233333332 444555543 111 11112345789999999998764
No 236
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=22.20 E-value=1.9e+02 Score=22.03 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.4
Q ss_pred ChhhhHHHHHHHhCCeEEEecc
Q 023592 125 RPQQKMAELCQLTGVKLITYGT 146 (280)
Q Consensus 125 ~~~~~~~~~~~~~gi~via~sp 146 (280)
..+..+++.+++.|+.+.-|++
T Consensus 47 ~~E~~L~~~A~~lg~pl~~~~~ 68 (126)
T PRK07027 47 ADEAGLLALCARHGWPLRAFSA 68 (126)
T ss_pred cCCHHHHHHHHHhCCCeEEeCH
Confidence 3356899999999999998865
No 237
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=22.03 E-value=4.2e+02 Score=22.99 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=16.8
Q ss_pred hhhHHHHHHHhCCeEEEecc
Q 023592 127 QQKMAELCQLTGVKLITYGT 146 (280)
Q Consensus 127 ~~~~~~~~~~~gi~via~sp 146 (280)
..++++.++++|+.|.+|.+
T Consensus 247 ~~~~v~~~~~~Gl~v~~wTv 266 (290)
T cd08607 247 DPSQIELAKSLGLVVFCWGD 266 (290)
T ss_pred ChHHHHHHHHcCCEEEEECC
Confidence 35788889999999999976
No 238
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=22.00 E-value=6.1e+02 Score=23.10 Aligned_cols=110 Identities=12% Similarity=0.071 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHH-HcCCccEEEccCCCHHHHHHHHHcCCCe----
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLK-EEGKIKTVALTNFDTERLRIILENGIPV---- 112 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~-~~Gkir~iGvs~~~~~~l~~~~~~~~~~---- 112 (280)
+.+.|.+... ..++.|.-..-++.-.. + ...+..++.+..+..+ +.|.=-.+-+...+.++++++.+.+.+.
T Consensus 85 ~~eeIle~Ak-~ak~~Ga~r~c~~aagr-~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~ynhN 161 (335)
T COG0502 85 EVEEILEAAK-KAKAAGATRFCMGAAGR-G-PGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYNHN 161 (335)
T ss_pred CHHHHHHHHH-HHHHcCCceEEEEEecc-C-CCccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhheecc
Confidence 4455555543 45667733333333322 2 2234788888888888 5665444445577889999998874432
Q ss_pred -eEeeeeccccc--cChh--hhHHHHHHHhCCeEEEecccccc
Q 023592 113 -VSNQVQHSVVD--MRPQ--QKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 113 -~~~q~~~n~~~--~~~~--~~~~~~~~~~gi~via~spl~~G 150 (280)
+..+--|.-+. +..+ -+.+..+++.|+.+.+-..++.|
T Consensus 162 LeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlG 204 (335)
T COG0502 162 LETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLG 204 (335)
T ss_pred cccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCC
Confidence 22222222211 1112 24688899999999988888877
No 239
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=21.97 E-value=3.2e+02 Score=26.52 Aligned_cols=59 Identities=15% Similarity=0.099 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHH
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRII 105 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~ 105 (280)
......++|.+.|+.||.++ |- +....+.++...+.+++|.++|++ |. |..+.+++.+.
T Consensus 58 ~~~e~~~~I~~dL~WLGl~w-D~-----~~~qSdr~~~y~~~a~~Li~~G~A-Y~--C~cs~eel~~~ 116 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKP-DS-----VSFTSDYFEPIRCYAIILIEEGLA-YM--DDTPQEEMKKE 116 (523)
T ss_pred cchHHHHHHHHHHHHhCCCC-CC-----CccccccHHHHHHHHHHHHHcCCe-Ee--cCCCHHHHHHH
Confidence 34678889999999999986 52 122333367888999999999986 33 44467776554
No 240
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=21.88 E-value=3e+02 Score=21.32 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccC
Q 023592 35 VKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTN 96 (280)
Q Consensus 35 ~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~ 96 (280)
...+.+.+...+++..+. .-+.-.+=.+|.+.+ +..+.+.|+.+++.| +..+|+.+
T Consensus 79 ~~v~~~~L~~~L~~~~~~----~~~~~V~I~aD~~~~-~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 79 DPVTDETMITALDALTEG----KKDTTIFFRADKTVD-YETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred ccccHHHHHHHHHHHHhc----CCCceEEEEcCCCCC-HHHHHHHHHHHHHcC-CCeEEEEe
Confidence 345666666666655443 223333334566667 899999999999999 45688764
No 241
>PLN02775 Probable dihydrodipicolinate reductase
Probab=21.68 E-value=5.5e+02 Score=22.80 Aligned_cols=73 Identities=11% Similarity=0.011 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccc
Q 023592 44 ESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILENGIPVVSNQVQHSV 121 (280)
Q Consensus 44 ~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~ 121 (280)
..+++.|..+.-+|.|++.+.. ..+ .-+++.++.+.+.|+--=+|.+.|+.+++.++.+...-+.++--+|++
T Consensus 66 ~dl~~~l~~~~~~~~~~VvIDF---T~P--~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSi 138 (286)
T PLN02775 66 SEREAVLSSVKAEYPNLIVVDY---TLP--DAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGK 138 (286)
T ss_pred ccHHHHHHHhhccCCCEEEEEC---CCh--HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccH
Confidence 4566666666666899888875 333 467788999999999999999999999888776642235555555554
No 242
>PRK11024 colicin uptake protein TolR; Provisional
Probab=21.56 E-value=2.8e+02 Score=21.47 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEcc
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALT 95 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs 95 (280)
.+.+.+...+.+.++. .-|...+=.+|...+ +..+.+.|+.+++.|. ..+++.
T Consensus 85 v~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~-~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKA----NPKTVFLIGGAKDVP-YDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhh----CCCceEEEEcCCCCC-HHHHHHHHHHHHHcCC-CeEEEE
Confidence 3455555555554443 224334445567777 8999999999999984 456664
No 243
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=21.56 E-value=46 Score=27.37 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=10.2
Q ss_pred HHHhhcCCCcccE
Q 023592 48 VSRRRMDVPCLDM 60 (280)
Q Consensus 48 ~SL~~L~~d~iDl 60 (280)
+.|+.||+||||=
T Consensus 87 qiLealgVD~IDE 99 (208)
T PF01680_consen 87 QILEALGVDYIDE 99 (208)
T ss_dssp HHHHHTT-SEEEE
T ss_pred hhHHHhCCceecc
Confidence 5689999999984
No 244
>PRK09726 antitoxin HipB; Provisional
Probab=21.49 E-value=1.2e+02 Score=21.37 Aligned_cols=53 Identities=11% Similarity=0.048 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCCceeeecccCCCHhHHHHhHhhhcCC
Q 023592 196 QTLKRIASKHGVSIPVVAVRYILDQPAVAGSMIGVRLGLAEHIQDTNAIFMLS 248 (280)
Q Consensus 196 ~~l~~la~~~~~s~~q~al~~~l~~~~v~~~i~G~~~~~~~~l~~nl~a~~~~ 248 (280)
..++.+.++.|+|..++|-+--++++.+.-..-|.+..+.+.+...++++...
T Consensus 15 ~~lk~~R~~~gltq~elA~~~gvs~~tis~~e~g~~~ps~~~l~~ia~~lgv~ 67 (88)
T PRK09726 15 NAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELS 67 (88)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHCCCCCCCHHHHHHHHHHcCCC
Confidence 56677777778888887776555555444444443322456666666666544
No 245
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=21.45 E-value=1.2e+02 Score=24.52 Aligned_cols=68 Identities=25% Similarity=0.268 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHcC-CccEEEccCCCH--HHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEecc
Q 023592 73 YLDALNHLTDLKEEG-KIKTVALTNFDT--ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGT 146 (280)
Q Consensus 73 ~~~~~~~L~~l~~~G-kir~iGvs~~~~--~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~sp 146 (280)
..+++++|.++++.| +|..+|..+... ..+.+++ + ..+.+..|+-. ..-...+..+++.|+.++.-+.
T Consensus 63 ~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll--~--~~i~~~~~~~~--~e~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 63 GFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELL--G--VDIKIYPYDSE--EEIEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHH--T---EEEEEEESSH--HHHHHHHHHHHHTT--EEEESH
T ss_pred HhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHh--C--CceEEEEECCH--HHHHHHHHHHHHcCCcEEECCH
Confidence 368899999988776 666667666553 4555554 2 35555555431 2224678889999999986543
No 246
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=21.43 E-value=6.4e+02 Score=24.24 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=25.1
Q ss_pred ccEEEEecCCCCCC--cHHHHHHHHHHHHH---cCCccE-EEccCCCHHHHHHHHHcCC
Q 023592 58 LDMLQFHWWDYSNP--GYLDALNHLTDLKE---EGKIKT-VALTNFDTERLRIILENGI 110 (280)
Q Consensus 58 iDl~~lH~~~~~~~--~~~~~~~~L~~l~~---~Gkir~-iGvs~~~~~~l~~~~~~~~ 110 (280)
+|.|-+........ ...+.++.+..+++ ..+-+| .|+. ++..+..++..|+
T Consensus 185 f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL~GvG--~P~~i~~~V~lGv 241 (487)
T PRK13533 185 FDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHLFGAG--HPMMFALAVALGC 241 (487)
T ss_pred CCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEEeCCC--CHHHHHHHHHhCC
Confidence 45566665433321 13444444444443 455555 5666 5666666555443
No 247
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=21.32 E-value=6.7e+02 Score=23.32 Aligned_cols=91 Identities=16% Similarity=0.178 Sum_probs=46.3
Q ss_pred CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcC-CCcccEEEEecCCCCCCc---HHHHHHHHHHH-------HHcCC
Q 023592 20 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMD-VPCLDMLQFHWWDYSNPG---YLDALNHLTDL-------KEEGK 88 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~-~d~iDl~~lH~~~~~~~~---~~~~~~~L~~l-------~~~Gk 88 (280)
+.+-++|.|-+.+.--+ +.++.-+++.-++.. --.+.++.+|.|...... +..++++|-+. +++++
T Consensus 81 ~p~~I~v~~tC~~~liG---dDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~ 157 (428)
T cd01965 81 KPDVIGVLTTCLTETIG---DDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKPSEVKKNGK 157 (428)
T ss_pred CCCEEEEECCcchhhcC---CCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcccCCCCCCe
Confidence 34457777777542211 233333333322211 024567888887655321 23344444332 23467
Q ss_pred ccEEEccCC---CHHHHHHHHHc-CCCee
Q 023592 89 IKTVALTNF---DTERLRIILEN-GIPVV 113 (280)
Q Consensus 89 ir~iGvs~~---~~~~l~~~~~~-~~~~~ 113 (280)
|.-||-++. +.+.+.++++. +.++.
T Consensus 158 VNlig~~~~~~~d~~el~~lL~~~Gl~v~ 186 (428)
T cd01965 158 VNLLPGFPLTPGDVREIKRILEAFGLEPI 186 (428)
T ss_pred EEEECCCCCCccCHHHHHHHHHHcCCCEE
Confidence 888876654 35677777765 54443
No 248
>PLN02714 thiamin pyrophosphokinase
Probab=21.27 E-value=3.9e+02 Score=22.65 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHhCCC------CceeeecccCCCHhHHHHhHhhhc
Q 023592 208 SIPVVAVRYILDQPA------VAGSMIGVRLGLAEHIQDTNAIFM 246 (280)
Q Consensus 208 s~~q~al~~~l~~~~------v~~~i~G~~~~~~~~l~~nl~a~~ 246 (280)
|=.+.||+|++.+.. -..++.|+.-++.+|.-.|+..+-
T Consensus 90 TD~e~Al~~~~~~~~~~~~~~~~I~v~Ga~GGRlDH~laNi~~L~ 134 (229)
T PLN02714 90 TDLHKCIAYIRDSTPDLDKSNLCILVLGALGGRFDHEAGNINVLY 134 (229)
T ss_pred CHHHHHHHHHHHhccccccCCceEEEEcccCCchHHHHHHHHHHH
Confidence 555778888875422 346788988888999999998764
No 249
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=21.22 E-value=2.1e+02 Score=25.89 Aligned_cols=20 Identities=15% Similarity=0.624 Sum_probs=16.3
Q ss_pred hhhHHHHHHHhCCeEEEeccc
Q 023592 127 QQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 127 ~~~~~~~~~~~gi~via~spl 147 (280)
...+.++|++.||.+++ +|+
T Consensus 78 ~~~L~~~~~~~Gi~~~s-tpf 97 (329)
T TIGR03569 78 HRELKEYCESKGIEFLS-TPF 97 (329)
T ss_pred HHHHHHHHHHhCCcEEE-EeC
Confidence 35789999999999997 455
No 250
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.20 E-value=3.1e+02 Score=23.64 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.2
Q ss_pred hhHHHHHHHhCCeEEEe
Q 023592 128 QKMAELCQLTGVKLITY 144 (280)
Q Consensus 128 ~~~~~~~~~~gi~via~ 144 (280)
...++.|+..|..++..
T Consensus 97 ~~~i~~a~~lG~~~v~~ 113 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQL 113 (279)
T ss_pred HHHHHHHHHhCCCEEEe
Confidence 46789999999998865
No 251
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.16 E-value=6.5e+02 Score=23.14 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=54.2
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHc------CCccEEEccCCCHHHHHHHHHcCCCeeEeeeeccccccC-hhhhHHHH
Q 023592 61 LQFHWWDYSNPGYLDALNHLTDLKEE------GKIKTVALTNFDTERLRIILENGIPVVSNQVQHSVVDMR-PQQKMAEL 133 (280)
Q Consensus 61 ~~lH~~~~~~~~~~~~~~~L~~l~~~------Gkir~iGvs~~~~~~l~~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~ 133 (280)
+++-.|-+..+ ..+-++.+.+|.+. +.--..|-+.++...+.++++. .-.+++|...+-.-.- .-..+..+
T Consensus 230 ~~iEqP~~~~d-~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-~a~div~~kl~k~GGIt~a~kia~l 307 (369)
T cd03314 230 LRIEGPMDAGS-REAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-GAAHMVQIKTPDLGGIDNTIDAVLY 307 (369)
T ss_pred EEEecCCCCCc-chhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-CCCCEEEecchhcCCHHHHHHHHHH
Confidence 45555543221 11235566666655 4555666677788888888874 3478888887754221 13578999
Q ss_pred HHHhCCeEEEecc
Q 023592 134 CQLTGVKLITYGT 146 (280)
Q Consensus 134 ~~~~gi~via~sp 146 (280)
|+.+||.++..+.
T Consensus 308 A~a~Gi~~~~h~~ 320 (369)
T cd03314 308 CKEHGVGAYLGGS 320 (369)
T ss_pred HHHcCCcEEEeCC
Confidence 9999999998654
No 252
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=21.15 E-value=4.2e+02 Score=22.53 Aligned_cols=84 Identities=11% Similarity=0.162 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc---CCCeeE
Q 023592 38 TSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN---GIPVVS 114 (280)
Q Consensus 38 ~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~---~~~~~~ 114 (280)
+.+.+...+.+....+|.+|+-+...+.+....+ ..+-++||..+..+...+. ..+|++
T Consensus 22 ~~~~l~~~l~~~~~~~Gf~~~~~~~~~~~~~~~~------------------~~~~~~nyP~~W~~~Y~~~~y~~~DPvv 83 (240)
T PRK10188 22 AAEEVYHELQLQTQQLEYDYYSLCVRHPVPFTRP------------------KVAFYTTYPEAWVSHYQAENYFAIDPVL 83 (240)
T ss_pred CHHHHHHHHHHHHHHCCCccEeeecccCCCCCCC------------------ceEEecCCCHHHHHHHHHCCCeeeCHHH
Confidence 7789999999999999999954422221111111 1345688888777777664 233443
Q ss_pred ee--eeccccccC-----hhhhHHHHHHHhCC
Q 023592 115 NQ--VQHSVVDMR-----PQQKMAELCQLTGV 139 (280)
Q Consensus 115 ~q--~~~n~~~~~-----~~~~~~~~~~~~gi 139 (280)
.. ....++.+. ....+++.+++.|+
T Consensus 84 ~~~~~~~~P~~W~~~~~~~~~~~~~~a~~~Gl 115 (240)
T PRK10188 84 KPENFSQGHLMWNDDLFSEAQALWDAARAHGL 115 (240)
T ss_pred HHHhcCCCCeeCCccccchHHHHHHHHHHcCC
Confidence 21 122233322 24578888988874
No 253
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=21.12 E-value=3.5e+02 Score=26.59 Aligned_cols=59 Identities=14% Similarity=0.035 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHH
Q 023592 40 SIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDTERLRIILE 107 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~ 107 (280)
....+++.+.|+.||+++ |- +......++...+.+++|.++|++ | +|..+.+++.+...
T Consensus 152 ~e~~~~I~edL~wLGl~w-D~-----~~~qSdr~~~y~~~a~~Li~~G~A-Y--~C~cs~ee~~~~r~ 210 (567)
T PRK04156 152 PEAYDMILEDLKWLGVKW-DE-----VVIQSDRLEIYYEYARKLIEMGGA-Y--VCTCDPEEFKELRD 210 (567)
T ss_pred HHHHHHHHHHHHHcCCCC-CC-----ccCcccCHHHHHHHHHHHHHcCCC-c--cCCCCHHHHHHHHh
Confidence 455578999999999966 52 223334478889999999999996 3 55557777765543
No 254
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=21.05 E-value=3.9e+02 Score=24.86 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcC-CccEEEccCCC---HHHHHHHHHcCCCeeEeeeeccccc-cChhhhHHHHHHHhCCeEEEecccc
Q 023592 74 LDALNHLTDLKEEG-KIKTVALTNFD---TERLRIILENGIPVVSNQVQHSVVD-MRPQQKMAELCQLTGVKLITYGTVM 148 (280)
Q Consensus 74 ~~~~~~L~~l~~~G-kir~iGvs~~~---~~~l~~~~~~~~~~~~~q~~~n~~~-~~~~~~~~~~~~~~gi~via~spl~ 148 (280)
.-+++.+..|..+| .|.|+.|.... .++++++++-....+.++.--|-.- -.+-.++-+.|+++|+-+..=...+
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa 181 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQA 181 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhh
Confidence 45788888887778 88999888765 4666666653222333333333211 1234578899999987776655555
Q ss_pred cccc
Q 023592 149 GGLL 152 (280)
Q Consensus 149 ~G~L 152 (280)
-|.+
T Consensus 182 ~Gki 185 (386)
T COG1104 182 VGKI 185 (386)
T ss_pred cCce
Confidence 5544
No 255
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=20.97 E-value=3e+02 Score=24.99 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=55.9
Q ss_pred CCCCeEEEeeccCCCCCCCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCccEEEccCCCH
Q 023592 20 HQSSWISLTKWVPPPVKMTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIKTVALTNFDT 99 (280)
Q Consensus 20 ~R~~~~I~tK~~~~~~~~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir~iGvs~~~~ 99 (280)
.-++.+|..-+|.. |.-+-+...+.|+..-+ -|.|-|=+=..+-++...+. .-....+|. ..|..
T Consensus 11 ~~~~~~iIAEig~N-HnG~le~A~~lIdaAk~-aGADavKfQt~~~~d~~t~~---------~~~~~~~i~----~~~~~ 75 (347)
T COG2089 11 KDKKPFIIAEIGAN-HNGDLERAKELIDAAKE-AGADAVKFQTFYTPDIMTLE---------SKNVPFKIK----TLWDK 75 (347)
T ss_pred CCCCcEEEeeeccc-ccCcHHHHHHHHHHHHH-cCcceeeeeccccccccccc---------ccCCccccc----ccccc
Confidence 44667777777653 34477888888887766 77776554333333222221 111122333 12222
Q ss_pred HHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEecccccc
Q 023592 100 ERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTVMGG 150 (280)
Q Consensus 100 ~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl~~G 150 (280)
..+.++++. .+.|+ ....++.++|++.||.++. +|+...
T Consensus 76 ~slyel~e~--------~~~p~---e~~~~Lke~a~~~Gi~~~S-SPfd~~ 114 (347)
T COG2089 76 VSLYELYEE--------AETPL---EWHAQLKEYARKRGIIFFS-SPFDLT 114 (347)
T ss_pred ccHHHHHHH--------hcCCH---HHHHHHHHHHHHcCeEEEe-cCCCHH
Confidence 333333331 11222 2245799999999999886 677543
No 256
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=20.85 E-value=1e+02 Score=22.79 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=30.8
Q ss_pred CHHHHHHHHHcCCCeeEeeeeccccccChhhhHHHHHHHhCCeEEEeccc
Q 023592 98 DTERLRIILENGIPVVSNQVQHSVVDMRPQQKMAELCQLTGVKLITYGTV 147 (280)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~via~spl 147 (280)
+.+.+..+.....+|+++-+.-.--......++.++++++||++..+.+-
T Consensus 40 ~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~ 89 (110)
T PF04430_consen 40 TPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTP 89 (110)
T ss_dssp ETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HH
T ss_pred CHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHH
Confidence 45677777765334555554443322344568999999999999998765
No 257
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=20.78 E-value=1.8e+02 Score=16.59 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHcCCCHHHHH
Q 023592 194 LLQTLKRIASKHGVSIPVVA 213 (280)
Q Consensus 194 ~~~~l~~la~~~~~s~~q~a 213 (280)
..+.+.++|++.|.|.+++.
T Consensus 10 ~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 10 LYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHH
Confidence 35789999999999998854
No 258
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.63 E-value=6.5e+02 Score=22.91 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=56.2
Q ss_pred EEEEecCCCC----------CCcHHHHHHHHHHHHHc-CC---ccEEEcc--CCCHHHHHHHHHc--CCCeeEeeeeccc
Q 023592 60 MLQFHWWDYS----------NPGYLDALNHLTDLKEE-GK---IKTVALT--NFDTERLRIILEN--GIPVVSNQVQHSV 121 (280)
Q Consensus 60 l~~lH~~~~~----------~~~~~~~~~~L~~l~~~-Gk---ir~iGvs--~~~~~~l~~~~~~--~~~~~~~q~~~n~ 121 (280)
.+.||.|+.. ...++++++++.+..++ |+ ++|+=+. |.+.+.+.++.+. +.+..+.-++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 4678877432 11257899999977754 22 2233343 4556666666654 4557788899997
Q ss_pred cccC---h----hhhHHHHHHHhCCeEEEeccccc
Q 023592 122 VDMR---P----QQKMAELCQLTGVKLITYGTVMG 149 (280)
Q Consensus 122 ~~~~---~----~~~~~~~~~~~gi~via~spl~~ 149 (280)
-... + -..+.+..+++||.+......+.
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 4211 1 13456677888999998877654
No 259
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=20.63 E-value=1.1e+02 Score=26.36 Aligned_cols=50 Identities=8% Similarity=0.071 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH---HHhCCCCceeeecccCCCHhHHHHhHhh
Q 023592 192 QVLLQTLKRIASKHGVSIPVVAVRY---ILDQPAVAGSMIGVRLGLAEHIQDTNAI 244 (280)
Q Consensus 192 ~~~~~~l~~la~~~~~s~~q~al~~---~l~~~~v~~~i~G~~~~~~~~l~~nl~a 244 (280)
.+++.++..||..|++++.+++..| .+++..-. .-+... +.+.++..++.
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~~~-~~l~~~--~L~~F~~~lq~ 61 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQLDD-TKLTLD--NLDQFKQYLQD 61 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT-SC-----TT--TTTGGGTTTSG
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCc-CcCCHH--HHHHHHHHHHH
Confidence 3567899999999999999999987 45554322 123444 56665555543
No 260
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=20.49 E-value=5.5e+02 Score=21.99 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=33.4
Q ss_pred CHHHHHHHHHc-CCCeeEee--eeccccccCh---hhhHHHHHHHhCCeEEEeccccccc
Q 023592 98 DTERLRIILEN-GIPVVSNQ--VQHSVVDMRP---QQKMAELCQLTGVKLITYGTVMGGL 151 (280)
Q Consensus 98 ~~~~l~~~~~~-~~~~~~~q--~~~n~~~~~~---~~~~~~~~~~~gi~via~spl~~G~ 151 (280)
.+.+++.+.+. |..+..+. .+||.++... ...+.++++.-|-.-..+.|+..|.
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s 109 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGS 109 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCC
Confidence 34555555553 54443332 2445433221 3578999999999999999997763
No 261
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=20.43 E-value=3.3e+02 Score=22.37 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc-CC--CeeEeeeeccccccChhh-hHHHHHHHhCC
Q 023592 73 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN-GI--PVVSNQVQHSVVDMRPQQ-KMAELCQLTGV 139 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~-~~--~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi 139 (280)
+.++.+.|+.|++.|.--+| +||.....+...++. +. -|+.+..........+.. -+...|++.|+
T Consensus 94 ~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 163 (222)
T PRK10826 94 LPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGV 163 (222)
T ss_pred CCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCC
Confidence 45677889999999864444 666666666666653 22 255444433332233332 34455555554
No 262
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=20.34 E-value=1.3e+02 Score=27.10 Aligned_cols=47 Identities=11% Similarity=-0.031 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhcCC--CcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCcc
Q 023592 40 SIVRESIDVSRRRMDV--PCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKIK 90 (280)
Q Consensus 40 ~~i~~~i~~SL~~L~~--d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gkir 90 (280)
+...+.+.+.+++||+ |+-..+.-+. ..-...+.+.+.+|.++|.|=
T Consensus 87 ~~~~~~~~~~~~~lgi~~~~~~~~~T~~----~~~~~~v~~~f~~L~~~G~iY 135 (338)
T cd00818 87 LRYVDEQEEQFQRLGVWVDWENPYKTMD----PEYMESVWWVFKQLHEKGLLY 135 (338)
T ss_pred HHHHHHHHHHHHHhCceecCCCCeECCC----HHHHHHHHHHHHHHHHCCCEe
Confidence 3456777889999998 5443333222 122467999999999999974
No 263
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=20.33 E-value=4.3e+02 Score=24.71 Aligned_cols=40 Identities=8% Similarity=0.016 Sum_probs=25.1
Q ss_pred HHHHHHHhhc---CCCcccEEEEecCCCCCCcHHHHHHHHHHHHHc
Q 023592 44 ESIDVSRRRM---DVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEE 86 (280)
Q Consensus 44 ~~i~~SL~~L---~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~ 86 (280)
+.+++..+.| +.+.+|+++|-+|... .+|+.+..+.|+.+
T Consensus 273 ~dl~~~~~~l~~~~~~~~D~V~lGcPH~S---~~El~~ia~ll~gr 315 (400)
T PF04412_consen 273 ADLEEVYEELNTAGDEKVDLVALGCPHLS---LEELREIAELLEGR 315 (400)
T ss_pred HHHHHHHHHhccCCCCCCCEEEECCCCCC---HHHHHHHHHHHhCC
Confidence 3455555555 6789999999998664 45554444444433
No 264
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=20.32 E-value=4.3e+02 Score=20.77 Aligned_cols=96 Identities=11% Similarity=0.072 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEEecCCCCCCcHHHHHHHHHHHHHcCCc-cEEEccCCCHHHHHHHHHc-CCCeeE
Q 023592 37 MTSSIVRESIDVSRRRMDVPCLDMLQFHWWDYSNPGYLDALNHLTDLKEEGKI-KTVALTNFDTERLRIILEN-GIPVVS 114 (280)
Q Consensus 37 ~~~~~i~~~i~~SL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~L~~l~~~Gki-r~iGvs~~~~~~l~~~~~~-~~~~~~ 114 (280)
+.--.+++.+.+-|+..|-+.+|+=. |..+ ..+ +.+.-..+.+.+.+|.. +-|.+|.........+.+. ++.-..
T Consensus 7 haG~~lK~~l~~~L~~~g~eV~D~G~-~~~~-~~d-Ypd~a~~va~~V~~g~~~~GIliCGtGiG~siaANK~~GIraa~ 83 (144)
T TIGR00689 7 HAGLELKSEIIEHLKQKGHEVIDCGT-LYDE-RVD-YPDYAKLVADKVVAGEVSLGILICGTGIGMSIAANKFKGIRAAL 83 (144)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEcCC-CCCC-CCC-hHHHHHHHHHHHHcCCCceEEEEcCCcHHHHHHHhcCCCeEEEE
Confidence 34568999999999999988888743 2222 233 78888899999999998 7788888887777777664 322222
Q ss_pred eeeeccccccChhhhHHHHHH-HhCCeEEEec
Q 023592 115 NQVQHSVVDMRPQQKMAELCQ-LTGVKLITYG 145 (280)
Q Consensus 115 ~q~~~n~~~~~~~~~~~~~~~-~~gi~via~s 145 (280)
+. + ......++ .+|.-|++++
T Consensus 84 ~~--------d--~~~A~~ar~hNnaNVl~lG 105 (144)
T TIGR00689 84 CV--------D--EYTAALARQHNDANVLCLG 105 (144)
T ss_pred EC--------C--HHHHHHHHHhcCCcEEEEC
Confidence 21 1 12334455 4467788765
No 265
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.17 E-value=6.6e+02 Score=22.84 Aligned_cols=101 Identities=12% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHhhcC------CCcccEEEEecC-----------CCCCCcHHHHHHHHHH-HHHcCCccEEEcc-----CCCHHHHHH
Q 023592 48 VSRRRMD------VPCLDMLQFHWW-----------DYSNPGYLDALNHLTD-LKEEGKIKTVALT-----NFDTERLRI 104 (280)
Q Consensus 48 ~SL~~L~------~d~iDl~~lH~~-----------~~~~~~~~~~~~~L~~-l~~~Gkir~iGvs-----~~~~~~l~~ 104 (280)
+.|...+ .+....+.||.+ ....+ +.++++++.+ +.+.|+--.+=+. |.+.+.+.+
T Consensus 197 ~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~-l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~ 275 (345)
T PRK14457 197 PQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYP-IENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEE 275 (345)
T ss_pred HHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCC-HHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHH
Q ss_pred HHHc--CCCeeEeeeeccccccCh--------hhhHHHHHHHhCCeEEEeccccc
Q 023592 105 ILEN--GIPVVSNQVQHSVVDMRP--------QQKMAELCQLTGVKLITYGTVMG 149 (280)
Q Consensus 105 ~~~~--~~~~~~~q~~~n~~~~~~--------~~~~~~~~~~~gi~via~spl~~ 149 (280)
+.+. +.+..++-++||++.... -..+.+..+++|+.+......+.
T Consensus 276 La~~l~~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~ 330 (345)
T PRK14457 276 LANLLRGFQSHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRASRGL 330 (345)
T ss_pred HHHHHhcCCCeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCC
No 266
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=20.07 E-value=3.7e+02 Score=22.69 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHcCCccEEEccCCCHHHHHHHHHc----CCCeeEeeeeccccccChhhh-HHHHHHHhCC
Q 023592 73 YLDALNHLTDLKEEGKIKTVALTNFDTERLRIILEN----GIPVVSNQVQHSVVDMRPQQK-MAELCQLTGV 139 (280)
Q Consensus 73 ~~~~~~~L~~l~~~Gkir~iGvs~~~~~~l~~~~~~----~~~~~~~q~~~n~~~~~~~~~-~~~~~~~~gi 139 (280)
+.++.+.|+.|++.|.--.| +||.....+...++. +..++.+...-......+..+ +...+++.|+
T Consensus 101 ~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~ 171 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAIELGV 171 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHHHcCC
Confidence 45677889999999854444 666666666666553 221244433323222334333 3444455554
Done!