Query 023593
Match_columns 280
No_of_seqs 122 out of 1196
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 09:29:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 2.7E-07 9.1E-12 67.6 9.3 73 53-125 32-105 (110)
2 2i68_A Protein EMRE; transmemb 98.4 4.2E-07 1.4E-11 69.0 6.9 71 54-124 33-104 (137)
3 2i68_A Protein EMRE; transmemb 98.1 5E-06 1.7E-10 63.0 5.4 62 215-276 36-99 (137)
4 3b5d_A Multidrug transporter E 97.8 4.5E-05 1.5E-09 55.6 6.3 62 215-276 36-99 (110)
5 2b2h_A AMT-1, ammonium transpo 17.8 4.9E+02 0.017 22.7 19.7 26 213-238 347-372 (399)
6 1u7g_A Probable ammonium trans 5.9 1.3E+03 0.044 19.8 21.5 61 89-152 243-304 (385)
7 3l1l_A Arginine/agmatine antip 5.0 1.4E+03 0.047 19.2 9.9 14 130-143 411-424 (445)
8 3arc_T Photosystem II reaction 4.2 5.6E+02 0.019 13.5 2.1 13 93-105 17-29 (32)
9 4dx5_A Acriflavine resistance 3.5 1.5E+03 0.052 22.1 6.0 28 245-272 375-402 (1057)
10 2ww9_C Protein transport prote 3.4 9.8E+02 0.033 15.8 3.0 20 102-121 58-77 (87)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.60 E-value=2.7e-07 Score=67.56 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhhHHh-hhhHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHhcCc
Q 023593 53 VWLPVNVIFVGMLITSMFSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD 125 (280)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~v~i~~~~~l~e~~~~~~~~~~~l~~~Gv~l~~~~~ 125 (280)
......+++....++..+++++.|.+.+..+ ..+.|+++++.+++++||++++.+++++.++++|+.+....+
T Consensus 32 ~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 32 PSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344345677888889999999999999888 899999999999999999999999999999999999876544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.44 E-value=4.2e-07 Score=68.97 Aligned_cols=71 Identities=13% Similarity=0.160 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhhhhhcccchhhhHHh-hhhHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHhcC
Q 023593 54 WLPVNVIFVGMLITSMFSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 124 (280)
Q Consensus 54 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~v~i~~~~~l~e~~~~~~~~~~~l~~~Gv~l~~~~ 124 (280)
.....+++.+..++.++++++.|++.+..+ .++.|+++++++++++||++++.+++++.++++|+.+....
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344445677889999999999999999888 99999999999999999999999999999999999987543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.05 E-value=5e-06 Score=62.99 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHH-HHHhhcChhhHhHH-hhhhhHHHHHHHHHhccccCcccchhhhHHhhhhhc
Q 023593 215 GFLGLAISFTSM-WFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGKLALL 276 (280)
Q Consensus 215 ~~~~~~~~~~~~-~~~~~~s~~~~s~~-~~l~~v~~~~~~~~~f~e~~~~~~~~G~~l~~~g~~ 276 (280)
+++++++++..+ .++|+.++.+...+ ..+.|+.+.++|+++|||++++.+++|+.+++.|.+
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ 99 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVL 99 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 445555565554 68999999988777 899999999999999999999999999999999864
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.79 E-value=4.5e-05 Score=55.56 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHH-HHHhhcChhhHhHH-hhhhhHHHHHHHHHhccccCcccchhhhHHhhhhhc
Q 023593 215 GFLGLAISFTSM-WFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGKLALL 276 (280)
Q Consensus 215 ~~~~~~~~~~~~-~~~~~~s~~~~s~~-~~l~~v~~~~~~~~~f~e~~~~~~~~G~~l~~~g~~ 276 (280)
++.+....+..+ .+.|+.+..+...+ ..+.|+.+.+.|+++|||++|..+++|+.+++.|.+
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~ 99 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVL 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 334444555443 57899998888666 899999999999999999999999999999999864
No 5
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=17.80 E-value=4.9e+02 Score=22.65 Aligned_cols=26 Identities=4% Similarity=-0.073 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcChhhHh
Q 023593 213 LSGFLGLAISFTSMWFLHQTGATTYS 238 (280)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~s~~~~s 238 (280)
.....+....+..+..+|++.+.+.+
T Consensus 347 ~~~~~~~v~~~i~~~il~~~~glRv~ 372 (399)
T 2b2h_A 347 STTAYAFLVTLILAKAVDAAVGLRVS 372 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSBCC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 33445555566666778877666654
No 6
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=5.88 E-value=1.3e+03 Score=19.84 Aligned_cols=61 Identities=8% Similarity=-0.158 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCcccCHHHHHHHHHHHHHHH-HHhcCccccchhhHHHHHHHHHHHHHHHHHHHH
Q 023593 89 VITAVGEMYLFNKRHDNRVWAALFLMIISAI-SGGITDLSFHAVGYAWQIINCFLTASYSLTLRR 152 (280)
Q Consensus 89 i~v~i~~~~~l~e~~~~~~~~~~~l~~~Gv~-l~~~~~~~~~~~G~~~~~~~~~~~a~~~i~~~~ 152 (280)
+..++.++. .++|++....+.-. ++|.. +....+.-..+..++.++++.+..-....+.|+
T Consensus 243 l~~~~~~~~-~~gk~~~~~~~nG~--lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~ 304 (385)
T 1u7g_A 243 LGWIFGEWA-LRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKR 304 (385)
T ss_dssp HHHHHHHHH-HHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCCHHHHHHHH--HHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444455554 46678876655433 23332 322223222234566666666654443433443
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=5.00 E-value=1.4e+03 Score=19.15 Aligned_cols=14 Identities=0% Similarity=-0.042 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHHH
Q 023593 130 AVGYAWQIINCFLT 143 (280)
Q Consensus 130 ~~G~~~~~~~~~~~ 143 (280)
..|..+.+.+...+
T Consensus 411 ~~~~~~~~~g~~~y 424 (445)
T 3l1l_A 411 MWSFVTLMVITAMY 424 (445)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555444443
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=4.22 E-value=5.6e+02 Score=13.53 Aligned_cols=13 Identities=8% Similarity=-0.125 Sum_probs=8.4
Q ss_pred HHHHHHhCcccCH
Q 023593 93 VGEMYLFNKRHDN 105 (280)
Q Consensus 93 i~~~~~l~e~~~~ 105 (280)
++-.+++||.|+.
T Consensus 17 iFFAI~FRePPri 29 (32)
T 3arc_T 17 FFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHTSCCCCC
T ss_pred HHHhhhhcCCCCC
Confidence 3555677887753
No 9
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=3.54 E-value=1.5e+03 Score=22.13 Aligned_cols=28 Identities=7% Similarity=-0.018 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhccccCcccchhhhHHhh
Q 023593 245 KIPLSVAGILLFKVPTSLENSASIFFGK 272 (280)
Q Consensus 245 ~v~~~~~~~~~f~e~~~~~~~~G~~l~~ 272 (280)
.+...+....++|.+++....+|.++.+
T Consensus 375 ~~~~~~~~l~~~g~~ln~~sl~gl~~~i 402 (1057)
T 4dx5_A 375 VLLGTFAVLAAFGFSINTLTMFGMVLAI 402 (1057)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHe
Confidence 3444444555667777777777765544
No 10
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=3.41 E-value=9.8e+02 Score=15.82 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=16.1
Q ss_pred ccCHHHHHHHHHHHHHHHHH
Q 023593 102 RHDNRVWAALFLMIISAISG 121 (280)
Q Consensus 102 ~~~~~~~~~~~l~~~Gv~l~ 121 (280)
|.++..++.+-+++++..++
T Consensus 58 KV~P~~VLv~sl~FIa~Vil 77 (87)
T 2ww9_C 58 RVDSLVVLFLSVGFIFSVIA 77 (87)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred EEcCeeehhhHHHHHHHHHH
Confidence 68888888888888887765
Done!