Query 023593
Match_columns 280
No_of_seqs 122 out of 1196
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 09:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023593.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023593hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 31.5 1.2E+02 0.0088 24.3 22.4 54 88-143 239-293 (383)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 10.1 96 0.007 14.1 2.9 17 131-147 3-19 (27)
3 d2h5na1 a.287.1.2 (A:1-132) Hy 3.1 4.9E+02 0.036 15.8 2.9 39 100-142 78-116 (132)
4 d1uptb_ a.193.1.1 (B:) Golgi a 3.0 2.6E+02 0.019 15.5 1.3 19 92-110 11-29 (58)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 2.3 9.1E+02 0.066 16.2 5.2 28 246-273 77-104 (199)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.1 1.1E+03 0.081 16.8 8.1 63 53-119 4-66 (248)
7 d2c0sa1 a.30.7.1 (A:1-57) Hypo 1.8 7.2E+02 0.053 13.5 2.1 19 8-26 20-38 (57)
8 d1gl4a1 d.22.1.2 (A:399-631) D 1.6 3.6E+02 0.026 19.7 0.7 36 70-106 43-78 (233)
9 d1tzyb_ a.22.1.1 (B:) Histone 1.4 8.6E+02 0.062 14.5 2.2 28 146-176 5-32 (92)
10 d2axtt1 f.23.34.1 (T:1-30) Pho 1.4 6.3E+02 0.046 11.3 3.1 6 255-260 22-27 (30)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=31.48 E-value=1.2e+02 Score=24.26 Aligned_cols=54 Identities=2% Similarity=-0.200 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCcccCHHHHHHHHHHHHHHHHHhcCccccch-hhHHHHHHHHHHH
Q 023593 88 NVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHA-VGYAWQIINCFLT 143 (280)
Q Consensus 88 pi~v~i~~~~~l~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~-~G~~~~~~~~~~~ 143 (280)
-..+......+.++|++....+.-. ++|..-++....-.++ ...+.+.++++..
T Consensus 239 ~~~~~~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~ 293 (383)
T d1u7ga_ 239 AILGWIFGEWALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAG 293 (383)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHH
Confidence 3344444444567788877755433 3354443333223343 3466666655443
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.10 E-value=96 Score=14.12 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 023593 131 VGYAWQIINCFLTASYS 147 (280)
Q Consensus 131 ~G~~~~~~~~~~~a~~~ 147 (280)
.|.+..-++.+.+|.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777777888887764
No 3
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.07 E-value=4.9e+02 Score=15.79 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=24.4
Q ss_pred CcccCHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHH
Q 023593 100 NKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFL 142 (280)
Q Consensus 100 ~e~~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~~~~~~~~~ 142 (280)
|..-.++++.+ ...|+++.+-+|.+-| .=.+|.+++.+|
T Consensus 78 rmdeerkkyva---sylgvimasdgdiddn-elalwtlistlc 116 (132)
T d2h5na1 78 RMDEERKKYVA---SYLGVIMASDGDIDDN-ELALWTLISTLC 116 (132)
T ss_dssp TSCHHHHHHHH---HHHHHHSCBTTBCCHH-HHHHHHHHHHHH
T ss_pred HHhHHHHHHHH---HHhhheeccCCCCCcc-HhHHHHHHHHHh
Confidence 44444556555 5678888876665544 445677777766
No 4
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.97 E-value=2.6e+02 Score=15.51 Aligned_cols=19 Identities=5% Similarity=-0.136 Sum_probs=13.0
Q ss_pred HHHHHHHhCcccCHHHHHH
Q 023593 92 AVGEMYLFNKRHDNRVWAA 110 (280)
Q Consensus 92 ~i~~~~~l~e~~~~~~~~~ 110 (280)
.++.|...+|..+..+.++
T Consensus 11 vLfeYMmG~E~~tlaKVi~ 29 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVIT 29 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHH
Confidence 4567777777777666555
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=2.31 E-value=9.1e+02 Score=16.20 Aligned_cols=28 Identities=7% Similarity=-0.050 Sum_probs=12.7
Q ss_pred HHHHHHHHHhccccCcccchhhhHHhhh
Q 023593 246 IPLSVAGILLFKVPTSLENSASIFFGKL 273 (280)
Q Consensus 246 v~~~~~~~~~f~e~~~~~~~~G~~l~~~ 273 (280)
+........++|.+++.....+..+.+.
T Consensus 77 i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 77 LLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 3333334444455555555444444433
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.13 E-value=1.1e+03 Score=16.76 Aligned_cols=63 Identities=6% Similarity=0.014 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccchhhhHHhhhhHHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHH
Q 023593 53 VWLPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAI 119 (280)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pi~v~i~~~~~l~e~~~~~~~~~~~l~~~Gv~ 119 (280)
++..+|++.++..+.-......-+...+ ...-+.+.+..++++.+|.-+.+++.=.+++..+.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a----~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFA----ITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHH----HHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHH----HHHHHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 4555566655554443333333333322 23445666777888888877777665444444443
No 7
>d2c0sa1 a.30.7.1 (A:1-57) Hypothetical protein BAS4809, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=1.77 E-value=7.2e+02 Score=13.52 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=13.3
Q ss_pred HHhcCCCChhHHHHHHHHH
Q 023593 8 VLSGYNFDAGISLMVYQNF 26 (280)
Q Consensus 8 ~l~~~~f~~p~~l~~~r~~ 26 (280)
++..|||..+-++.+.|=+
T Consensus 20 Lv~~YGf~h~kvl~~SQEL 38 (57)
T d2c0sa1 20 LVEKYGFTHHKVISFSQEL 38 (57)
T ss_dssp HHHHTCTTSHHHHHHHHHH
T ss_pred HHHHHCCCchHHHHHHHHH
Confidence 4456788777777777754
No 8
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.65 E-value=3.6e+02 Score=19.66 Aligned_cols=36 Identities=6% Similarity=-0.089 Sum_probs=28.9
Q ss_pred hhhcccchhhhHHhhhhHHHHHHHHHHHHhCcccCHH
Q 023593 70 FSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNR 106 (280)
Q Consensus 70 ~al~~~~~~~~~~l~~~~pi~v~i~~~~~l~e~~~~~ 106 (280)
.++..+|.+....++-+.|+... ++|+|-+|.....
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~-igWlFA~e~~~a~ 78 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGI-IGWMFAVEQDGFK 78 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHH-HHHHTCEECTTCC
T ss_pred EEccCCChhHhhhhhhhhhhcCc-eeeeEEeecCCcc
Confidence 47888999999999999988776 6788888876544
No 9
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}
Probab=1.42 E-value=8.6e+02 Score=14.54 Aligned_cols=28 Identities=18% Similarity=0.396 Sum_probs=14.6
Q ss_pred HHHHHHHHhhhhhccccCCCCChhHHHHHHH
Q 023593 146 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNN 176 (280)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (280)
|.+|..|.++++. ++..++.-.+...++
T Consensus 5 y~~Yi~kVLKqVh---p~~giS~kam~imns 32 (92)
T d1tzyb_ 5 YSIYVYKVLKQVH---PDTGISSKAMGIMNS 32 (92)
T ss_dssp CHHHHHHHHHHHC---TTCEECHHHHHHHHH
T ss_pred HHHHHHHHHHhhC---CCCCccHHHHHHHHH
Confidence 4566777776532 233455555444443
No 10
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.39 E-value=6.3e+02 Score=11.34 Aligned_cols=6 Identities=33% Similarity=0.971 Sum_probs=2.7
Q ss_pred hccccC
Q 023593 255 LFKVPT 260 (280)
Q Consensus 255 ~f~e~~ 260 (280)
+|.|++
T Consensus 22 ffrepp 27 (30)
T d2axtt1 22 FFREPP 27 (30)
T ss_dssp HTSCCC
T ss_pred HhcCCC
Confidence 344444
Done!