BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023595
MSILPYNSLMQLKIPSHSCAKTTRKSFSICARLDNSQQEEQQLNLSVLRFTFGIPGFDES
YLPRWIGYGFGSLIVLNHFAFSNSVTSAQLRSEVLGLSLAAFSVTLPYLGKFLKGASPVS
QKSLPESGEQIFVMSQNISDALKENLAWATYVLLRNTNSISVLISIRGELCVRGYWQTPD
GASKTQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPS
AVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRDLR

High Scoring Gene Products

Symbol, full name Information P value
HCF208
AT5G52110 		protein from Arabidopsis thaliana 7.2e-84

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023595
        (280 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2173048 - symbol:HCF208 "AT5G52110" species:37...   840  7.2e-84   1


>TAIR|locus:2173048 [details] [associations]
            symbol:HCF208 "AT5G52110" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0010190 "cytochrome b6f complex
            assembly" evidence=IMP] [GO:0010207 "photosystem II assembly"
            evidence=RCA] EMBL:CP002688 GO:GO:0009507 EMBL:AB015478
            GO:GO:0010190 InterPro:IPR021325 Pfam:PF11152 EMBL:BT029468
            IPI:IPI00534187 RefSeq:NP_001032060.1 RefSeq:NP_200024.1
            UniGene:At.29637 STRING:Q9FJ81 PRIDE:Q9FJ81
            EnsemblPlants:AT5G52110.1 EnsemblPlants:AT5G52110.2 GeneID:835287
            KEGG:ath:AT5G52110 TAIR:At5g52110 HOGENOM:HOG000071046
            InParanoid:Q9FJ81 OMA:LCVRGYW PhylomeDB:Q9FJ81
            ProtClustDB:CLSN2687456 Genevestigator:Q9FJ81 Uniprot:Q9FJ81
        Length = 275

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 163/268 (60%), Positives = 211/268 (78%)

Query:    15 PSHSCAKTTRKSFSICARLDN----SQQEEQQLNLSVLRFTFGIPGFDESYLPRWIGYGF 70
             P  +     ++S  I AR +N    S+  +QQLNLSVLRFTFGIPGFDESYLPRWIGYGF
Sbjct:    12 PKFALQPRAQRSTRIFARTENDSPQSKTSDQQLNLSVLRFTFGIPGFDESYLPRWIGYGF 71

Query:    71 GSLIVLNHFAFSNSVTSAQLRSEVLGLSLAAFSVTLPYLGKFLKGASPVSQKSLPESGEQ 130
             GSL++LNHF+ S  ++ +Q+RSE LGLSLAAFS+ LPY+GKFLKG S V Q+SLPE GEQ
Sbjct:    72 GSLLLLNHFSASAPISESQMRSEALGLSLAAFSIALPYIGKFLKG-SVVEQRSLPEEGEQ 130

Query:   131 IFVMSQNISDALKENLAWATYVLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLEW 190
             +FV+S NI D+LKE+LAWATYVLLRNT++I+VLIS++GELCVRGYW  PD  SK QL +W
Sbjct:   131 VFVISSNIGDSLKEDLAWATYVLLRNTSTIAVLISVQGELCVRGYWNCPDQMSKAQLHDW 190

Query:   191 FERQIENIGLSDLKDSLYFPQSADAG-QWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEG 249
             F+++++ IGL+D+K++LYFPQ A +    ++LP GT S+FVQP++Q  N    E +K+ G
Sbjct:   191 FKKKVDEIGLADVKETLYFPQYAGSALSLDILPDGTRSLFVQPLVQNTN----EPQKVNG 246

Query:   250 FVLLASSMTYAYSHKDRAWIKAVSNKFR 277
             F+L+AS+  YAYS KDRAWI A++ KFR
Sbjct:   247 FLLVASTAGYAYSDKDRAWIGAMAEKFR 274


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.393    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      280       280   0.00082  115 3  11 22  0.50    33
                                                     33  0.41    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  206 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.37u 0.11s 24.48t   Elapsed:  00:00:01
  Total cpu time:  24.37u 0.11s 24.48t   Elapsed:  00:00:01
  Start:  Fri May 10 10:21:16 2013   End:  Fri May 10 10:21:17 2013

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