Query 023595
Match_columns 280
No_of_seqs 93 out of 95
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 09:31:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mmh_A FRMSR, methionine-R-sul 97.1 0.011 3.9E-07 49.7 13.7 124 136-278 30-158 (167)
2 3ksh_A Putative uncharacterize 97.0 0.014 4.8E-07 49.3 13.6 124 137-278 31-157 (160)
3 3rfb_A Putative uncharacterize 97.0 0.012 4.2E-07 50.3 12.9 106 156-278 50-158 (171)
4 3p01_A Two-component response 96.9 0.0077 2.6E-07 48.6 10.5 106 160-278 65-175 (184)
5 3e0y_A Conserved domain protei 96.7 0.019 6.5E-07 44.5 10.8 81 185-278 82-162 (181)
6 1vhm_A Protein YEBR; structura 96.6 0.055 1.9E-06 46.7 13.8 106 156-278 61-169 (195)
7 3trc_A Phosphoenolpyruvate-pro 96.5 0.066 2.2E-06 41.1 12.7 81 185-278 77-157 (171)
8 3o5y_A Sensor protein; GAF dom 96.4 0.039 1.3E-06 45.6 11.5 108 157-278 23-139 (165)
9 3ci6_A Phosphoenolpyruvate-pro 96.3 0.082 2.8E-06 39.9 11.8 80 186-278 80-159 (171)
10 3dba_A CONE CGMP-specific 3',5 96.1 0.0072 2.5E-07 49.5 5.3 82 185-278 87-169 (180)
11 3oov_A Methyl-accepting chemot 95.9 0.2 7E-06 38.2 12.6 121 148-278 23-158 (169)
12 1f5m_A GAF; CGMP binding, sign 95.9 0.22 7.6E-06 41.7 13.8 126 137-278 41-175 (180)
13 2w3g_A DOSS, two component sen 95.8 0.026 9.1E-07 42.4 7.2 80 185-278 61-141 (153)
14 2e4s_A CAMP and CAMP-inhibited 95.7 0.011 3.8E-07 46.6 4.8 82 185-278 90-172 (189)
15 3hcy_A Putative two-component 95.6 0.0052 1.8E-07 47.3 2.5 79 188-278 57-135 (151)
16 2zmf_A CAMP and CAMP-inhibited 95.5 0.018 6E-07 45.1 5.2 82 185-278 90-172 (189)
17 2qyb_A Membrane protein, putat 95.1 0.25 8.7E-06 38.7 10.8 80 185-278 72-154 (181)
18 2vjw_A GAF-B, GAF family prote 94.9 0.28 9.7E-06 39.2 10.7 70 185-278 60-130 (149)
19 3k2n_A Sigma-54-dependent tran 94.1 0.08 2.7E-06 41.3 5.5 84 185-278 77-162 (177)
20 2k2n_A Sensor protein, SYB-CPH 93.3 0.055 1.9E-06 43.3 3.4 49 222-278 115-163 (172)
21 1ykd_A Adenylate cyclase; GAF 92.5 0.32 1.1E-05 43.7 7.6 130 137-277 22-179 (398)
22 2lb5_A Sensor histidine kinase 92.4 0.19 6.6E-06 41.1 5.5 49 222-278 145-193 (208)
23 3ibj_A CGMP-dependent 3',5'-cy 92.4 1.4 4.7E-05 43.7 12.7 83 185-278 250-333 (691)
24 1mc0_A 3',5'-cyclic nucleotide 91.4 0.36 1.2E-05 42.5 6.5 83 185-278 250-333 (368)
25 4glq_A Methyl-accepting chemot 91.3 1.1 3.9E-05 36.7 9.1 123 143-278 13-150 (171)
26 1ykd_A Adenylate cyclase; GAF 87.6 0.53 1.8E-05 42.2 4.6 85 185-278 267-372 (398)
27 2w1r_A Spovt, stage V sporulat 76.7 13 0.00045 29.3 8.4 108 150-278 8-119 (123)
28 3cit_A Sensor histidine kinase 70.3 8.4 0.00029 32.7 6.0 51 219-277 89-142 (160)
29 3bjc_A CGMP-specific 3',5'-cyc 62.0 1.6 5.6E-05 44.8 0.0 86 186-278 413-504 (878)
30 3bjc_A CGMP-specific 3',5'-cyc 59.4 1.9 6.6E-05 44.3 0.0 82 186-278 231-315 (878)
31 1mc0_A 3',5'-cyclic nucleotide 52.6 19 0.00063 31.4 5.2 79 187-277 82-161 (368)
32 3im4_C Dual specificity A kina 49.4 4.9 0.00017 27.7 0.7 12 139-150 10-21 (45)
33 3ibj_A CGMP-dependent 3',5'-cy 45.6 11 0.00039 37.1 3.0 80 186-277 81-161 (691)
34 3zq5_A Phytochrome-like protei 39.4 39 0.0013 33.4 5.7 78 148-235 354-433 (520)
35 4gb7_A 6-aminohexanoate-dimer 34.6 54 0.0019 30.3 5.6 27 151-177 102-128 (422)
36 3nhq_A Bacteriophytochrome; ph 32.1 41 0.0014 33.1 4.5 80 146-235 339-418 (505)
37 3zzm_A Bifunctional purine bio 22.7 47 0.0016 33.2 2.9 89 135-235 403-496 (523)
38 4ehi_A Bifunctional purine bio 21.8 1.8E+02 0.0062 29.2 6.9 89 136-235 412-507 (534)
39 1hji_B NUN-protein; bacterioph 21.6 66 0.0023 19.4 2.3 19 259-277 2-20 (26)
40 3eea_A GAF domain/HD domain pr 20.5 1.1E+02 0.0039 26.0 4.5 111 150-275 22-149 (162)
No 1
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=97.13 E-value=0.011 Score=49.70 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=84.1
Q ss_pred cCchHHHHHHHHHHHHHHhhhccccEEEEEE--CCEEEEeeeccCCCC--CCh-HHHHHHHHHHhhhcccccCCCccccc
Q 023595 136 QNISDALKENLAWATYVLLRNTNSISVLISI--RGELCVRGYWQTPDG--ASK-TQLLEWFERQIENIGLSDLKDSLYFP 210 (280)
Q Consensus 136 ~~Lsd~~k~ELAWas~~LLtnT~a~svlV~~--~g~ll~RG~~~~p~~--~~~-g~i~~r~~~~~~~~~L~~L~~t~lyP 210 (280)
.|+.+.+.+=++-..+.+ ..+.+++.++. ++++..+-+-+.+.. +.. .-+|-++.++++.+-..|. .-+|
T Consensus 30 ~dl~~~L~~v~~~l~~~l--~~~~~~iyL~d~~~~~L~l~a~~G~~~~~~i~~geGi~G~v~~~g~~~~v~Dv---~~~p 104 (167)
T 3mmh_A 30 TDWVANLANTAAVLKEAF--GWFWVGFYLVDTRSDELVLAPFQGPLACTRIPFGRGVCGQAWAKGGTVVVGDV---DAHP 104 (167)
T ss_dssp CCHHHHHHHHHHHHHHHH--CCSEEEEEEEETTTTEEEEEEEESSCCCSEEETTSHHHHHHHHHTSCEEESCG---GGST
T ss_pred CCHHHHHHHHHHHHHHHc--CCcEEEEEEEECCCCEEEEEEecccccceEeccCCChHHHHHhCCcEEEECCc---ccCc
Confidence 345555555444455544 35666666663 345544333233322 222 3489999999999988766 5566
Q ss_pred CCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHHhhhh
Q 023595 211 QSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 211 gr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
+... . -.+++|.+|.||-.+ .+.=|||-+.+..++.||+.|+.+++.+|+-+..
T Consensus 105 ~~~~---~---~~~~~S~i~vPi~~~--------g~viGVL~i~s~~~~~F~~~d~~~L~~lA~~la~ 158 (167)
T 3mmh_A 105 DHIA---C---SSLSRSEIVVPLFSD--------GRCIGVLDADSEHLAQFDETDALYLGELAKILEK 158 (167)
T ss_dssp TCCC---S---STTCCEEEEEEEEET--------TEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHH
T ss_pred chhh---c---CccCCeEEEEEeccC--------CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5433 1 257999999999652 3457999999999999999999999999998765
No 2
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=97.05 E-value=0.014 Score=49.31 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=85.3
Q ss_pred CchHHHHHHHHHHHHHHhhhccccEEEEEECCEEEEeeeccCCCC--CCh-HHHHHHHHHHhhhcccccCCCcccccCCc
Q 023595 137 NISDALKENLAWATYVLLRNTNSISVLISIRGELCVRGYWQTPDG--ASK-TQLLEWFERQIENIGLSDLKDSLYFPQSA 213 (280)
Q Consensus 137 ~Lsd~~k~ELAWas~~LLtnT~a~svlV~~~g~ll~RG~~~~p~~--~~~-g~i~~r~~~~~~~~~L~~L~~t~lyPgr~ 213 (280)
|+.+.+.+=.+-..+.+ ...+.+++-++.++++.+..+-+.++. +.. .-+|-++.++++.+-+.|. .-+|+..
T Consensus 31 dl~~~L~~v~~ll~~~l-~~~~~~gfYL~~~~~L~l~~~~G~~a~~ri~~GeGv~G~aa~~~~~i~V~Dv---~~~p~~i 106 (160)
T 3ksh_A 31 HMIAILSNMSALLNDNL-DQINWVGFYLLEQNELILGPFQGHPACVHIPIGKGVCGTAVSERRTQVVADV---HQFKGHI 106 (160)
T ss_dssp CHHHHHHHHHHHHHHHC-SSCSEEEEEEEETTEEEEEEEEESCCCSEEETTSHHHHHHHHHTSCEEESCG---GGSTTCC
T ss_pred CHHHHHHHHHHHHHHHc-ccCCEEEEEEEECCEEEEEeccCCcccEEeeCCCCHHHHHHhhCCEEEECCc---ccCcccc
Confidence 44444444333333332 235677877778888554333233332 222 3589999999999988776 5677754
Q ss_pred cccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHHhhhh
Q 023595 214 DAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 214 E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
. .+ ..++|.+|.||-.+ .+.=|||-+.+..++.|++.|+.+++.+|+-+..
T Consensus 107 ~---~~---~~~~Sei~VPI~~~--------g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~la~ 157 (160)
T 3ksh_A 107 A---CD---ANSKSEIVVPIFKD--------DKIIGVLDIDAPITDRFDDNDKEHLEAIVKIIEK 157 (160)
T ss_dssp G---GG---TTCSEEEEEEEEET--------TEEEEEEEEEESSSSCCCHHHHHHHHHHHHHHHH
T ss_pred c---cC---cccCceEEEEEEEC--------CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4 22 46899999999652 2457999999999999999999999999998764
No 3
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.012 Score=50.32 Aligned_cols=106 Identities=15% Similarity=0.115 Sum_probs=77.0
Q ss_pred hccccEEEEEECCEEEEeeeccCCCC--CCh-HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEe
Q 023595 156 NTNSISVLISIRGELCVRGYWQTPDG--ASK-TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQP 232 (280)
Q Consensus 156 nT~a~svlV~~~g~ll~RG~~~~p~~--~~~-g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQP 232 (280)
..+.+++-++.++++....+-+.++. +.. .-||-++.++++.+-+.|. .-+|+... .+ ..++|.||.|
T Consensus 50 ~~~~~gfYL~~~~~L~l~a~~G~~a~~ri~~GeGv~G~va~tg~~i~V~Dv---~~~p~~i~---~~---~~~~Sei~VP 120 (171)
T 3rfb_A 50 NTVFAGFYLFDGKELVLGPFQGGVSCIRIALGKGVCGEAAHFQETVIVGDV---TTYLNYIS---CD---SLAKSEIVVP 120 (171)
T ss_dssp TEEEEEEEEECSSEEEEEEEESSSCCCEEETTSHHHHHHHHTTSCEEESCT---TSCSSCCC---SC---TTCCEEEEEE
T ss_pred CCCEEEEEEEECCEEEEEeccCCccceEeeCCcCHHHHHHhhCCEEEECCc---ccCccccc---cC---cccCceEEEE
Confidence 35566766667777554322222332 222 3589999999999988776 56776543 12 4689999999
Q ss_pred ccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHHhhhh
Q 023595 233 VIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 233 ig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
|-.+ .+.=|||-+.+..++.|++.|+.+++.+|+-+..
T Consensus 121 I~~~--------g~viGVL~i~s~~~~~F~e~D~~~L~~lA~~la~ 158 (171)
T 3rfb_A 121 MMKN--------GQLLGVLDLDSSEIEDYDAMDRDYLEQFVAILLE 158 (171)
T ss_dssp EEET--------TEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHH
T ss_pred EEEC--------CEEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9652 2447999999999999999999999999998865
No 4
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=96.93 E-value=0.0077 Score=48.59 Aligned_cols=106 Identities=9% Similarity=0.058 Sum_probs=71.9
Q ss_pred cEEEEEECCEEEE-eeeccCCC----CCChHHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEecc
Q 023595 160 ISVLISIRGELCV-RGYWQTPD----GASKTQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVI 234 (280)
Q Consensus 160 ~svlV~~~g~ll~-RG~~~~p~----~~~~g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig 234 (280)
+++..+.+|++.. .+.+..++ .+....++.++.++++...+.|..+..-|+.+. .+-..+.+|+++.||-
T Consensus 65 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~-----~~~~~~~~s~l~vPL~ 139 (184)
T 3p01_A 65 CILQMLEGQTLSTIQGFYSQQGTVNNWLNQDPLTNEAIATGQIQVAANIAKDPKLASIS-----QYQDNGIQSHVVIPIT 139 (184)
T ss_dssp EEEEEEETTEEEEEEEEEESSSSCCCCGGGCHHHHHHHHHCSCEEESCGGGCHHHHTCH-----HHHHHTCCEEEEEEEE
T ss_pred EEEEEecCCceeeeeeeccccCccCcccCCCcHHHHHHhhCCeEEEeccccCccccchh-----HHHHhCccEEEEEEEE
Confidence 3444456776543 33222221 133467899999999998876664333333211 1223488999999996
Q ss_pred CCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHHhhhh
Q 023595 235 QAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 235 ~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
.+ .+.-|+|.+.+..+|.||+.|...++.+|+.+..
T Consensus 140 ~~--------~~~~GvL~l~~~~~~~f~~~d~~ll~~lA~q~ai 175 (184)
T 3p01_A 140 YR--------NEMLGVLSLQWQQPISLREDELTLIHLSAQLVAI 175 (184)
T ss_dssp ET--------TEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred EC--------CEEEEEEEeCcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 52 3457999999999999999999999999998764
No 5
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=96.71 E-value=0.019 Score=44.49 Aligned_cols=81 Identities=11% Similarity=0.172 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchh
Q 023595 185 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHK 264 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~k 264 (280)
..++.++.++.++..+.|..+...|....+ ....+.+++++.||..+ .+.-|+|.+.+..++.||+.
T Consensus 82 ~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~-----~~~~~~~s~l~vPl~~~--------~~~iGvl~~~~~~~~~f~~~ 148 (181)
T 3e0y_A 82 DGITGSVARDGQYISLSRASQDPRYRYFPE-----LQEEKYNSMLSFPIGDK--------KEVYGVINLNTTSIRSFHED 148 (181)
T ss_dssp TSSHHHHHHHCCCEEEEEECCCCCC--------------CEEEEEEEEEECS--------SCEEEEEEEEESSCCCCCHH
T ss_pred CCeeeehhhcCCeEEecCcccCcccccccc-----ccccCcceEEEEEEEeC--------CeEEEEEEEeeCCCCCCCHH
Confidence 347889999999888766643222222111 12357899999999763 34579999999999999999
Q ss_pred hHHHHHHHHHhhhh
Q 023595 265 DRAWIKAVSNKFRD 278 (280)
Q Consensus 265 De~WI~~iA~KL~~ 278 (280)
|...++.+|+-+..
T Consensus 149 ~~~~l~~la~~~a~ 162 (181)
T 3e0y_A 149 EIYFVSIIANLILT 162 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999997754
No 6
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=96.55 E-value=0.055 Score=46.69 Aligned_cols=106 Identities=10% Similarity=0.107 Sum_probs=74.7
Q ss_pred hccccEEEEEECCEEEEeeeccCCCC--CCh-HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEe
Q 023595 156 NTNSISVLISIRGELCVRGYWQTPDG--ASK-TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQP 232 (280)
Q Consensus 156 nT~a~svlV~~~g~ll~RG~~~~p~~--~~~-g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQP 232 (280)
..+..++-++.++++....+-+.++. +.. .-+|-++.++++.+-..|+ .-+|+... . ..+++|.||.|
T Consensus 61 ~~~~~~iyL~d~~~L~l~~~~G~~~~~~i~~GeGi~G~aa~tg~~i~V~Dv---~~~p~~~~---~---~~~~~S~l~VP 131 (195)
T 1vhm_A 61 DINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDV---HVFDGHIA---C---DAASNSEIVLP 131 (195)
T ss_dssp SCSEEEEEEEETTEEEEEEEEESCCCSEEETTSHHHHHHHHHTSCEEESCT---TTCTTCCC---S---CCCCSEEEEEE
T ss_pred CCCEEEEEEEECCEEEEEEecCcccceEecCCCChHHHHHhcCCEEEECCc---ccCcchhh---c---CCCccEEEEEe
Confidence 44556666677777543222222222 222 3489999999999888776 34566443 2 24789999999
Q ss_pred ccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHHhhhh
Q 023595 233 VIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 233 ig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
|-.+ .+.-|||-+.+..++.|++.|+..++.+|+-+..
T Consensus 132 I~~~--------g~viGVL~i~s~~~~~F~e~d~~~L~~lA~~ia~ 169 (195)
T 1vhm_A 132 LVVK--------NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEK 169 (195)
T ss_dssp EEET--------TEEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHH
T ss_pred EeEC--------CEEEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9752 3457999999999999999999999999987754
No 7
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=96.51 E-value=0.066 Score=41.11 Aligned_cols=81 Identities=11% Similarity=0.217 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchh
Q 023595 185 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHK 264 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~k 264 (280)
..++.++.++.++..+.|..+..-|....+ .--.+..++++.||-.+ .+.-|+|.+.+..++.||+.
T Consensus 77 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~s~l~vPl~~~--------~~~~Gvl~~~~~~~~~f~~~ 143 (171)
T 3trc_A 77 EGLIGLVGEREEPINLADAPLHPAYKHRPE-----LGEEDYHGFLGIPIIEQ--------GELLGILVIQQLESHHFAEE 143 (171)
T ss_dssp CHHHHHHHHHTSCEEESCGGGSTTCCCCGG-----GCCCCCCEEEEEEEEET--------TEEEEEEEEEESSSCCCCHH
T ss_pred CChhhHHHhcCCeEEeCCCCCCCccccccc-----CCcccccEEEEEeEEEC--------CEEEEEEEEeecCCCCCCHH
Confidence 467889999999888866643222322222 12368899999999762 34579999999999999999
Q ss_pred hHHHHHHHHHhhhh
Q 023595 265 DRAWIKAVSNKFRD 278 (280)
Q Consensus 265 De~WI~~iA~KL~~ 278 (280)
|...++.+|+.+..
T Consensus 144 d~~~l~~la~~~a~ 157 (171)
T 3trc_A 144 EEAFCVTLAIHLAA 157 (171)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987754
No 8
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=96.42 E-value=0.039 Score=45.56 Aligned_cols=108 Identities=17% Similarity=0.176 Sum_probs=70.7
Q ss_pred ccccEEEEEECCEEEEeeeccCCC-------CCCh-HHHHHHHHHHhhhcccccCCCcccccCC-ccccccccCCCCCce
Q 023595 157 TNSISVLISIRGELCVRGYWQTPD-------GASK-TQLLEWFERQIENIGLSDLKDSLYFPQS-ADAGQWEMLPKGTCS 227 (280)
Q Consensus 157 T~a~svlV~~~g~ll~RG~~~~p~-------~~~~-g~i~~r~~~~~~~~~L~~L~~t~lyPgr-~E~~~~~~LP~ntqs 227 (280)
....+++.+.+|++..+-..+... .+.. +.++.++.++++..- .|..+. |.+ .+ -..+...+.+|
T Consensus 23 ~d~~~l~L~~~~~L~l~a~~~~~~~~~~~~~~ip~~~s~~~~v~~~~~~~v-~~~~~~---~~~~~~--~~~~~~~~~~S 96 (165)
T 3o5y_A 23 FDRISFLLLANETLKLSHVYPKGSHSLDIGSTIPKEQSLYWSALDQRQTIF-RSLTDT---QDNFYE--KQYLAILDLKS 96 (165)
T ss_dssp CSEEEEEEEETTEEEEEEEESTTCCSSCTTCEECSTTCHHHHHHHHTSCEE-EESCCT---TCCCTT--HHHHHTTTCCE
T ss_pred cceEEEEEEECCEEEEEEEecCCccccccccccCCccCHHHHHHHhCCeEE-EcCccc---cccccc--chHHHhhCCCE
Confidence 344566667788855422222211 1222 568899999988874 333111 111 00 00134578999
Q ss_pred eEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHHhhhh
Q 023595 228 VFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 228 VlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
++|.||-.+ .+.-|+|.+++..++.||+.|..+++.+|+.+..
T Consensus 97 ~l~vPL~~~--------~~~iGvl~l~~~~~~~f~~~d~~~l~~la~~~ai 139 (165)
T 3o5y_A 97 ILVIPIYSK--------NKRVGVLSIGRKQQIDWSLDDLAFLEQLTDHLAV 139 (165)
T ss_dssp EEEEEEECS--------SCEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCeeEC--------CEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999763 3447999999999999999999999999998753
No 9
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=96.27 E-value=0.082 Score=39.88 Aligned_cols=80 Identities=13% Similarity=0.195 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhh
Q 023595 186 QLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKD 265 (280)
Q Consensus 186 ~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kD 265 (280)
.++.++.++.+.....|..+...|....+ +-..+..++++.||-.+ .+.-|+|.+++..++.||+.|
T Consensus 80 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~s~l~vPl~~~--------~~~~Gvl~l~~~~~~~f~~~~ 146 (171)
T 3ci6_A 80 GLVGLVGQREEIVNLENASKHERFAYLPE-----TGEEIYNSFLGVPVMYR--------RKVMGVLVVQNKQPQDFSEAA 146 (171)
T ss_dssp HHHHHHHHHTSCEEESSGGGSTTC--------------CCCEEEEEEEEET--------TEEEEEEEEEESSCCCCCHHH
T ss_pred CeehhhhccCceEEecCCCcCcchhcccc-----ccccccceEEEEeEEEC--------CEEEEEEEEecCCCCCCCHHH
Confidence 48999999998887766532222222211 24457899999999752 234799999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 023595 266 RAWIKAVSNKFRD 278 (280)
Q Consensus 266 e~WI~~iA~KL~~ 278 (280)
...++.+|+.+..
T Consensus 147 ~~~l~~la~~~a~ 159 (171)
T 3ci6_A 147 ESFLVTLCAQLSG 159 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 10
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=96.08 E-value=0.0072 Score=49.47 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc-ccch
Q 023595 185 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY-AYSH 263 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R-~fT~ 263 (280)
.-|+.++.++++++-+.|..+..-|+...+ ...-..++|+||.||-.+ .+.=|||.+.+..+. .||+
T Consensus 87 ~gi~g~v~~tg~~v~i~d~~~d~~f~~~~~----~~~~~~~~S~L~vPl~~~--------~~viGVL~l~n~~~~~~Ft~ 154 (180)
T 3dba_A 87 IGIAGWVAHTKKFFNIPDVKKNNHFSDYLD----KKTGYTTVNMMAIPITQG--------KEVLAVVMALNKLNASEFSK 154 (180)
T ss_dssp SSHHHHHHHHTCCEEESCGGGCTTCCCHHH----HHHCCCCCCEEEEEEEET--------TEEEEEEEEEEESSSSSCCH
T ss_pred CCHHHHHHHhCCEEEecCCCCCcccChhhc----cccCccccEEEEEEeccC--------CEEEEEEEEEeCCCCCCCCH
Confidence 458999999999988877643333332211 001135799999999762 345799999988775 9999
Q ss_pred hhHHHHHHHHHhhhh
Q 023595 264 KDRAWIKAVSNKFRD 278 (280)
Q Consensus 264 kDe~WI~~iA~KL~~ 278 (280)
.|+..++.+|+-...
T Consensus 155 ~d~~lL~~lA~~aa~ 169 (180)
T 3dba_A 155 EDEEVFKKYLNFISL 169 (180)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987665
No 11
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=95.92 E-value=0.2 Score=38.21 Aligned_cols=121 Identities=12% Similarity=0.050 Sum_probs=75.5
Q ss_pred HHHHHHhhhccccEEEEE-EC-C--EEEEeeeccCCC----C----CC-hHHHHHHHHHHhhhcccccCCCc-ccccCCc
Q 023595 148 WATYVLLRNTNSISVLIS-IR-G--ELCVRGYWQTPD----G----AS-KTQLLEWFERQIENIGLSDLKDS-LYFPQSA 213 (280)
Q Consensus 148 Was~~LLtnT~a~svlV~-~~-g--~ll~RG~~~~p~----~----~~-~g~i~~r~~~~~~~~~L~~L~~t-~lyPgr~ 213 (280)
-.-+.+...+.+....|+ ++ + .+..+...+... . +. ...++.++.++.++....|..+. .+++.+.
T Consensus 23 ~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~ 102 (169)
T 3oov_A 23 LCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQVYMIDDVSAYPTDFRLQS 102 (169)
T ss_dssp HHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTCCEEESCGGGSCGGGSCCT
T ss_pred HHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCCCEEeccccchhhhhhccc
Confidence 344556666666655554 33 2 333332223221 1 11 46789999999998887665321 2232222
Q ss_pred cccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCc-cccchhhHHHHHHHHHhhhh
Q 023595 214 DAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMT-YAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 214 E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~-R~fT~kDe~WI~~iA~KL~~ 278 (280)
+ .-..-..+..++++.||-.+ .+.-|+|.+++..+ +.|++.|...++.+|+.+..
T Consensus 103 ~--~~~~~~~~~~s~l~vPl~~~--------~~~iGvl~~~~~~~~~~f~~~d~~~l~~~a~~~a~ 158 (169)
T 3oov_A 103 P--YDAIRALRSKSFVICPIVVK--------GEAIGVFAVDNRSSRRSLNDTDVDTIKLFADQASS 158 (169)
T ss_dssp T--GGGCGGGCCSSEEEEEEEET--------TEEEEEEEEECTTSSSCCCHHHHHHHHHHHHHHHH
T ss_pred c--HHHHHhcCcCcEEEEEEEeC--------CcEEEEEEEEccccCCCCCHHHHHHHHHHHHHHHH
Confidence 1 00123467899999999752 34579999998765 56999999999999998754
No 12
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=95.89 E-value=0.22 Score=41.73 Aligned_cols=126 Identities=13% Similarity=0.078 Sum_probs=79.9
Q ss_pred CchHHHHHHHHHHHHHHh---hhccccEEEEEEC---CEEEEeeeccCCCC--CCh-HHHHHHHHHHhhhcccccCCCcc
Q 023595 137 NISDALKENLAWATYVLL---RNTNSISVLISIR---GELCVRGYWQTPDG--ASK-TQLLEWFERQIENIGLSDLKDSL 207 (280)
Q Consensus 137 ~Lsd~~k~ELAWas~~LL---tnT~a~svlV~~~---g~ll~RG~~~~p~~--~~~-g~i~~r~~~~~~~~~L~~L~~t~ 207 (280)
|+.+.+.+-++-..+.+- ...+..++-++.+ +++....+.+.++. +.. .-+|-++.++++.+-..|. .
T Consensus 41 dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~~~~~i~~g~Gi~G~aa~~g~~v~v~Dv---~ 117 (180)
T 1f5m_A 41 NWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKVACQMIQFGKGVCGTAASTKETQIVPDV---N 117 (180)
T ss_dssp BHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESCCCSEEETTSHHHHHHHHHTSCEEESCG---G
T ss_pred cHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCccceeecCCCcchhhhhhcCCEEEeCCc---c
Confidence 344445444444444441 2334455555543 45443222222221 111 2389999999999888666 4
Q ss_pred cccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHHhhhh
Q 023595 208 YFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 208 lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
-+|+... ...++.|++|.||-.+ ..+.-|||-+.+..++.|++.|+..++.+|+-+..
T Consensus 118 ~dp~~~~------~~~~~~S~l~vPi~~~-------~g~viGVL~l~s~~~~~F~~~d~~~L~~la~~~a~ 175 (180)
T 1f5m_A 118 KYPGHIA------CDGETKSEIVVPIISN-------DGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINK 175 (180)
T ss_dssp GSTTCCC------SSTTCCEEEEEEEECT-------TSCEEEEEEEEESSTTCCCHHHHHHHHHHHHHHHH
T ss_pred cCccccc------cCcccceEEEEEEEcC-------CCeEEEEEEeccCCCCCcCHHHHHHHHHHHHHHHH
Confidence 4444332 2468999999999751 12447999999999999999999999999987654
No 13
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=95.85 E-value=0.026 Score=42.42 Aligned_cols=80 Identities=11% Similarity=0.073 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCc-cccch
Q 023595 185 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMT-YAYSH 263 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~-R~fT~ 263 (280)
..++.++.++.+.....|..+...|.+. .....+..++++.||-.+ .+.-|+|.+.+..+ |.||+
T Consensus 61 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~~~~~~~s~l~vPl~~~--------~~~~Gvl~l~~~~~~~~f~~ 126 (153)
T 2w3g_A 61 LGVIGLLIEDPKPLRLDDVSAHPASIGF------PPYHPPMRTFLGVPVRVR--------DESFGTLYLTDKTNGQPFSD 126 (153)
T ss_dssp CTHHHHHHHSCSCEEESSGGGSTTCCCC------CTTCCCCCCEEEEEEEET--------TEEEEEEEEEEETTSCCCCH
T ss_pred CCHHHHHHhcCCcEEecCcccCchhcCC------CCcCCCCCeEEEeeEEEC--------CEEEEEEEEeeCCCCCCCCH
Confidence 4578899998888877665322222221 113468899999999652 23479999999888 89999
Q ss_pred hhHHHHHHHHHhhhh
Q 023595 264 KDRAWIKAVSNKFRD 278 (280)
Q Consensus 264 kDe~WI~~iA~KL~~ 278 (280)
.|...++.+|+-+..
T Consensus 127 ~~~~~l~~la~~~a~ 141 (153)
T 2w3g_A 127 DDEVLVQALAAAAGI 141 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987754
No 14
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=95.74 E-value=0.011 Score=46.60 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc-ccch
Q 023595 185 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY-AYSH 263 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R-~fT~ 263 (280)
..++.++.+++++..+.|..+...|+...+ .+...++.++++.||-.+ .+.-|+|.+.+..++ .||+
T Consensus 90 ~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~----~~~~~~~~s~l~vPl~~~--------~~~iGvl~l~~~~~~~~f~~ 157 (189)
T 2e4s_A 90 KGIAGQVARTGEVLNIPDAYADPRFNREVD----LYTGYTTRNILCMPIVSR--------GSVIGVVQMVNKISGSAFSK 157 (189)
T ss_dssp SHHHHHHHHHCCCEEESCGGGSTTCCTHHH----HHHCCCCCCEEEEEEEET--------TEEEEEEEEEEETTSSSCCH
T ss_pred CcHHHHHHHhCCEEEecCCCcCcccChhhc----cccCCccceEEEEEeccC--------CeEEEEEEEEeCCCCCCCCH
Confidence 468999999999988766633333322111 123467899999999652 344799999998887 9999
Q ss_pred hhHHHHHHHHHhhhh
Q 023595 264 KDRAWIKAVSNKFRD 278 (280)
Q Consensus 264 kDe~WI~~iA~KL~~ 278 (280)
.|...++.+|+-+..
T Consensus 158 ~d~~ll~~la~~~a~ 172 (189)
T 2e4s_A 158 TDENNFKMFAVFCAL 172 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 15
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=95.63 E-value=0.0052 Score=47.32 Aligned_cols=79 Identities=8% Similarity=0.110 Sum_probs=52.5
Q ss_pred HHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHH
Q 023595 188 LEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRA 267 (280)
Q Consensus 188 ~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~ 267 (280)
|.++.++.+++.+.|..+...|+...+ .....|.+++++.||..+ .+.-|+|.+.+..+|.||+.|..
T Consensus 57 ~~~~~~~~~~~~i~d~~~~~~~~~~~~----~~~~~g~~s~~~vPl~~~--------~~~iGvl~~~~~~~~~f~~~~~~ 124 (151)
T 3hcy_A 57 WITGANEPEPIFVENVDDAEFSRELKE----SIVGEGIAALGFFPLVTE--------GRLIGKFMTYYDRPHRFADSEIG 124 (151)
T ss_dssp CC---CCCCCEEESCGGGSCCCHHHHH----HHHHHTCCEEEEEEEESS--------SSEEEEEEEEESSCCCCCHHHHH
T ss_pred hhhhhhcCCcEEEeChhhCcccchhHH----HHHhcCchheEEeceEEC--------CEEEEEEEEecCCCCCCCHHHHH
Confidence 445555566665555432222222111 134568899999999762 23479999999999999999999
Q ss_pred HHHHHHHhhhh
Q 023595 268 WIKAVSNKFRD 278 (280)
Q Consensus 268 WI~~iA~KL~~ 278 (280)
.++.+|+.+..
T Consensus 125 ll~~~a~~~a~ 135 (151)
T 3hcy_A 125 MALTIARQLGF 135 (151)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987653
No 16
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=95.53 E-value=0.018 Score=45.13 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEE-eeCCccccch
Q 023595 185 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLL-ASSMTYAYSH 263 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvl-gs~s~R~fT~ 263 (280)
..++.++.++++...+.+..+...|+.... .....++++++|.|+..+ .+.-|+|.+ ....+|.||+
T Consensus 90 ~~~~~~v~~~~~~~~i~d~~~~~~~~~~~~----~~~~~~~~s~l~vPl~~~--------~~~~Gvl~l~~~~~~~~f~~ 157 (189)
T 2zmf_A 90 KGIAGQVARTGEVLNIPDAYADPRFNREVD----LYTGYTTRNILCMPIVSR--------GSVIGVVQMVNKISGSAFSK 157 (189)
T ss_dssp SHHHHHHHHHCCCEEESCGGGSTTCCTHHH----HHHCCCCCCEEEEEEEET--------TEEEEEEEEEEETTSSSCCH
T ss_pred ccHHHHHHHhCCeEEEecccccccccccch----hhcccccceEEEeeeccc--------CceeeEEEEEEcCCCCCcCH
Confidence 457889999999887765532222221111 223457889999998762 234688855 5678899999
Q ss_pred hhHHHHHHHHHhhhh
Q 023595 264 KDRAWIKAVSNKFRD 278 (280)
Q Consensus 264 kDe~WI~~iA~KL~~ 278 (280)
.|...++.+|+.+..
T Consensus 158 ~d~~ll~~lA~q~a~ 172 (189)
T 2zmf_A 158 TDENNFKMFAVFCAL 172 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 17
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=95.12 E-value=0.25 Score=38.70 Aligned_cols=80 Identities=10% Similarity=0.039 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccCCcccccc-ccCCCCCceeEEEeccCCCCCCcccccc-cceEEEEee-CCcccc
Q 023595 185 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQW-EMLPKGTCSVFVQPVIQAPNPSAVEVEK-IEGFVLLAS-SMTYAY 261 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~-~~LP~ntqsVlvQPig~~~~~~~~~~~~-~~Gvlvlgs-~s~R~f 261 (280)
..+|.++.+++++....|. ...|. .. +. .+...|..++++.||..+ .+ .-|+|.+.+ ..++.|
T Consensus 72 ~~~~~~~~~~~~~~~v~d~---~~~~~-~~--~~~~~~~~g~~s~~~vPl~~~--------~~~~~GvL~l~~~~~~~~f 137 (181)
T 2qyb_A 72 ETYIGEAFLSNRLQFVNDT---QYMTK-PL--TRELMQKEGIKSFAHIPISRK--------GEPPFGILSVFSRTIVGLF 137 (181)
T ss_dssp TSHHHHHHHHTSCEEESCG---GGCSC-HH--HHHHHHHTTCCEEEEEEECCT--------TSCCCEEEEEEESSCSSCC
T ss_pred CCchhhhhhcCCCEEecCh---hcCCc-hh--hHHHHHhcCcceEEEEEEEeC--------CCeEEEEEEEecCCCCCCC
Confidence 3589999999998877555 33332 11 00 122458999999999762 22 469999999 999999
Q ss_pred chhhHHHHHHHHHhhhh
Q 023595 262 SHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 262 T~kDe~WI~~iA~KL~~ 278 (280)
|+.|...++.+|+-+..
T Consensus 138 ~~~d~~lL~~la~~~a~ 154 (181)
T 2qyb_A 138 NEPFLNLLESLAGQLAQ 154 (181)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999987754
No 18
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=94.90 E-value=0.28 Score=39.17 Aligned_cols=70 Identities=9% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeC-Cccccch
Q 023595 185 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASS-MTYAYSH 263 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~-s~R~fT~ 263 (280)
+.++.++.++++++-+.|.. .+ | +..|+||.||..+ .+.-|+|.+... .++.||+
T Consensus 60 ~g~~g~v~~~g~~v~v~d~~--------~d-------~-~~~s~l~vPL~~~--------~~~~GvL~l~~~~~~~~f~~ 115 (149)
T 2vjw_A 60 DNAIGQAFRDRAPRRLDVLD--------GP-------G-LGGPALVLPLRAT--------DTVAGVLVAVQGSGARPFTA 115 (149)
T ss_dssp SSHHHHHHHHCCCEEESCCC--------TT-------S-CEEEEEEEEEEET--------TEEEEEEEEEEETTCCCCCH
T ss_pred CCHHHHHhhcCceEEecCcc--------cC-------C-CCCeEEEEEEccC--------CeEEEEEEEeeCCCCCCCCH
Confidence 45889999999998776652 12 1 7899999999752 234799999998 8999999
Q ss_pred hhHHHHHHHHHhhhh
Q 023595 264 KDRAWIKAVSNKFRD 278 (280)
Q Consensus 264 kDe~WI~~iA~KL~~ 278 (280)
.|...++.+|+....
T Consensus 116 ~d~~ll~~lA~~aa~ 130 (149)
T 2vjw_A 116 EQLEMMTGFADQAAV 130 (149)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987643
No 19
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=94.08 E-value=0.08 Score=41.25 Aligned_cols=84 Identities=14% Similarity=0.157 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhhcccccCCC-cccccCCcccccc-ccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccc
Q 023595 185 TQLLEWFERQIENIGLSDLKD-SLYFPQSADAGQW-EMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYS 262 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~-t~lyPgr~E~~~~-~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT 262 (280)
+.++.++.+..+.... |..+ ...|+...+ ..+ .....|++++++.||-.+ .+.-|+|.+.+..++.||
T Consensus 77 ~~~~~~v~~~~~~~~~-d~~~~~~~~~~~~~-~~~~~~~~~~~~s~l~vPL~~~--------~~~iGvL~l~~~~~~~f~ 146 (177)
T 3k2n_A 77 GTWLEGHLDDRTVTVA-SIARDIPSFGADGA-PLLWTLHELGMRQIVLSPLRSG--------GRVIGFLSFVSAEEKLWS 146 (177)
T ss_dssp TSGGGGGTTCCSCEEE-ETTTTCTTTTTTTC-HHHHHHHHHTCCEEEEEEEEET--------TEEEEEEEEEESSCCCCC
T ss_pred ccHHHHHhccCCceEe-chhhcccccCCcch-hHHHHHHHcCceEEEEEEEEEC--------CEEEEEEEEEECCCCCCC
Confidence 3456777777666644 5532 222222100 000 134568999999999763 256899999999999999
Q ss_pred hhhHHHHHHHHHhhhh
Q 023595 263 HKDRAWIKAVSNKFRD 278 (280)
Q Consensus 263 ~kDe~WI~~iA~KL~~ 278 (280)
+.|...++.+|+.+..
T Consensus 147 ~~d~~ll~~lA~~~a~ 162 (177)
T 3k2n_A 147 DGDKSLLSGVSSSIAI 162 (177)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999997754
No 20
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=93.33 E-value=0.055 Score=43.26 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=42.5
Q ss_pred CCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHHhhhh
Q 023595 222 PKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 222 P~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
..|++|+|+.||-.+ .+.-|+|.+-...+|.||+.|...++.+|+-+..
T Consensus 115 ~~~~~s~l~vPi~~~--------~~l~G~l~~~~~~~~~~~~~e~~~l~~la~~~a~ 163 (172)
T 2k2n_A 115 SMGVASSLVVPLMHH--------QELWGLLVSHHAEPRPYSQEELQVVQLLADQVSI 163 (172)
T ss_dssp TTTCSEEEECCCSCS--------SCCCEEEEEEECSCCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCeEEEEEEEEEC--------CEEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 568999999999763 2347999999999999999999999999998754
No 21
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=92.55 E-value=0.32 Score=43.71 Aligned_cols=130 Identities=12% Similarity=0.069 Sum_probs=76.4
Q ss_pred CchHHHHHHHHHHHHHHhhhccccEEEEE--EC--CEEEE---eeeccCCCCC---ChHHHHHHHHHHhhhcccccCCCc
Q 023595 137 NISDALKENLAWATYVLLRNTNSISVLIS--IR--GELCV---RGYWQTPDGA---SKTQLLEWFERQIENIGLSDLKDS 206 (280)
Q Consensus 137 ~Lsd~~k~ELAWas~~LLtnT~a~svlV~--~~--g~ll~---RG~~~~p~~~---~~g~i~~r~~~~~~~~~L~~L~~t 206 (280)
++.....+=|.-....+...+.+....|| .. +++.. .|.-.....+ ....+|.++.++++.+.+.|....
T Consensus 22 ~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~g~~g~v~~~~~~v~i~d~~~~ 101 (398)
T 1ykd_A 22 GFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQELWSIVAAGEGDRSLEIRIPADKGIAGEVATFKQVVNIPFDFYH 101 (398)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCGGGCCCCCEEETTSHHHHHHHHHCCCEEECSCGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCCeEEEEeecCCCCccceeecCCCCchhhhhhccCcEEeccchhcc
Confidence 44444444455555555555666655554 32 33332 3432111111 123588999999998877665322
Q ss_pred ---ccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeC---------------CccccchhhHHH
Q 023595 207 ---LYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASS---------------MTYAYSHKDRAW 268 (280)
Q Consensus 207 ---~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~---------------s~R~fT~kDe~W 268 (280)
..|+...+ .....+++++++.||-.. ..+.-|+|.+... .++.||+.|+.-
T Consensus 102 ~~~~~~~~~~~----~~~~~~~~s~l~vPl~~~-------~g~~iGvl~l~~~~~~~~~~~~~l~~~~~~~~f~~~d~~~ 170 (398)
T 1ykd_A 102 DPRSIFAQKQE----KITGYRTYTMLALPLLSE-------QGRLVAVVQLLNKLKPYSPPDALLAERIDNQGFTSADEQL 170 (398)
T ss_dssp SGGGHHHHHHH----HHHCCCCSCEEEEEEECS-------SCCEEEEEEEEEEBCSCCCTTCCHHHHBCTTCCCHHHHHH
T ss_pred cchhhcccccC----cccCcCCceEEEEEEECC-------CCCEEEEEEEeccCCcccccccccccccccCCCCHHHHHH
Confidence 11211111 011246899999999641 1234799999887 789999999999
Q ss_pred HHHHHHhhh
Q 023595 269 IKAVSNKFR 277 (280)
Q Consensus 269 I~~iA~KL~ 277 (280)
++.+|+.+.
T Consensus 171 l~~~a~~~~ 179 (398)
T 1ykd_A 171 FQEFAPSIR 179 (398)
T ss_dssp GGGTHHHHH
T ss_pred HHHHHHHHH
Confidence 988887654
No 22
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=92.39 E-value=0.19 Score=41.05 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=42.4
Q ss_pred CCCCceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHHhhhh
Q 023595 222 PKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 222 P~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
..|++|+|+.||-.+ .+.-|+|.+-...+|.||+.|...++.+|+-+..
T Consensus 145 ~~~~~S~l~vPi~~~--------~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ 193 (208)
T 2lb5_A 145 SMGVASSLVVPLMHH--------QELWGLLVSHHAEPRPYSQEELQVVQLLADQVSI 193 (208)
T ss_dssp HTTCSEEEEEEEEET--------TEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCcEEEEEEEEEC--------CEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 458999999999763 3447999999999999999999999999998764
No 23
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=92.39 E-value=1.4 Score=43.73 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc-ccch
Q 023595 185 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY-AYSH 263 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R-~fT~ 263 (280)
..++.++.+++++..+.|..+...|+...+ ...-.++++++|.||..+ ..+.-|||.+....++ .||+
T Consensus 250 ~gi~g~v~~~g~~v~i~d~~~d~~~~~~~~----~~~g~~~rS~L~vPL~~~-------~g~viGVL~l~~~~~~~~f~~ 318 (691)
T 3ibj_A 250 QGIAGHVATTGQILNIPDAYAHPLFYRGVD----DSTGFRTRNILCFPIKNE-------NQEVIGVAELVNKINGPWFSK 318 (691)
T ss_dssp SHHHHHHHHHCSCEEESCSTTSTTC----------CCSCCCCCEEEEECCCS-------SSCCCEEEEEEEESSSSSCCT
T ss_pred CCHHHHHHHhCCEEEecCcccCccccchhh----cccCCeeeeEEEEeEECC-------CCCEEEEEEEEECCCCCCCCH
Confidence 468899999999988766643332322221 112245789999999762 1234699999988776 7999
Q ss_pred hhHHHHHHHHHhhhh
Q 023595 264 KDRAWIKAVSNKFRD 278 (280)
Q Consensus 264 kDe~WI~~iA~KL~~ 278 (280)
.|+.-++.+|+-+..
T Consensus 319 ~d~~ll~~lA~~~ai 333 (691)
T 3ibj_A 319 FDEDLATAFSIYCGI 333 (691)
T ss_dssp TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 24
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=91.41 E-value=0.36 Score=42.50 Aligned_cols=83 Identities=13% Similarity=0.098 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc-ccch
Q 023595 185 TQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY-AYSH 263 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R-~fT~ 263 (280)
..++.++.++++.....|..+...|+...+ ....-.++++++.||... ..+.-|+|.+.+..++ .||+
T Consensus 250 ~~~~~~~~~~~~~~~i~d~~~~~~~~~~~~----~~~~~~~~s~l~vPl~~~-------~~~~iGvl~l~~~~~~~~f~~ 318 (368)
T 1mc0_A 250 QGIAGHVATTGQILNIPDAYAHPLFYRGVD----DSTGFRTRNILCFPIKNE-------NQEVIGVAELVNKINGPWFSK 318 (368)
T ss_dssp SHHHHHHHHHCCCEEESCSTTCTTCCCTTH----HHHTCCCCCEEEEEEECT-------TSCEEEEEEEEEETTSSSCCH
T ss_pred CceeeeehhhCCEEEecCcccCcccchhhh----hccCCccceEEEEeeECC-------CCcEEEEEEEEECCCCCCCCH
Confidence 458889999998887766543333332211 001113699999999751 1344799999998886 8999
Q ss_pred hhHHHHHHHHHhhhh
Q 023595 264 KDRAWIKAVSNKFRD 278 (280)
Q Consensus 264 kDe~WI~~iA~KL~~ 278 (280)
.|...++.+|+-+..
T Consensus 319 ~d~~ll~~la~~~a~ 333 (368)
T 1mc0_A 319 FDEDLATAFSIYCGI 333 (368)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987653
No 25
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=91.26 E-value=1.1 Score=36.71 Aligned_cols=123 Identities=9% Similarity=0.023 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhhccccEEEEE-----ECCEEEEeeec-cCCC----CCChH---HHHHHHHHHhhhcccccCCCcccc
Q 023595 143 KENLAWATYVLLRNTNSISVLIS-----IRGELCVRGYW-QTPD----GASKT---QLLEWFERQIENIGLSDLKDSLYF 209 (280)
Q Consensus 143 k~ELAWas~~LLtnT~a~svlV~-----~~g~ll~RG~~-~~p~----~~~~g---~i~~r~~~~~~~~~L~~L~~t~ly 209 (280)
.+=|.-+...+...+.+.-++|| +.|++++-..- +-++ .+... +-.....++++...+.|. +.
T Consensus 13 ~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~~~I~Dv----~~ 88 (171)
T 4glq_A 13 QAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRIQATTDI----FK 88 (171)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCCEEESCG----GG
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCEEEEcCc----Cc
Confidence 33455567778888888888887 23566653221 1011 11111 122334455555555454 33
Q ss_pred cCCccccccc-cCCCCCceeEEEeccCCCCCCcccccccceEEEEee-CCccccchhhHHHHHHHHHhhhh
Q 023595 210 PQSADAGQWE-MLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLAS-SMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 210 Pgr~E~~~~~-~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs-~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
++..+.. -+ +-.-|.+|.|+.||..+ .+.-|+|.+-. ..+|.|++.|..+++.+|+.+..
T Consensus 89 ~~~~~~~-~~~l~~~~v~S~L~vPi~~~--------~~l~GlL~~~~~~~~r~w~~~ei~ll~~lA~ql~i 150 (171)
T 4glq_A 89 AGLTECH-LNQLRPLKVRANLVVPMVID--------DQLFGLLIAHQASEPRQWQEIEIDQFSELASTGSL 150 (171)
T ss_dssp TTCCHHH-HHHHGGGTEEEEEEEEEEET--------TEEEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHH-HHHHHhcCCcEEEEEEEEEC--------CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3322210 12 23679999999999763 23479999988 78999999999999999998864
No 26
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=87.61 E-value=0.53 Score=42.22 Aligned_cols=85 Identities=14% Similarity=0.189 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhhhcccc-cCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCC------
Q 023595 185 TQLLEWFERQIENIGLS-DLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSM------ 257 (280)
Q Consensus 185 g~i~~r~~~~~~~~~L~-~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s------ 257 (280)
..++.++.++++..... |..+...|....+ +-......++|++|.||-.. ..+.-|+|.+....
T Consensus 267 ~~~~~~v~~~~~~~~i~~d~~~~~~~~~~~~--~~~~~~~~~~s~l~vPl~~~-------~~~~iGvl~l~~~~~~~~~~ 337 (398)
T 1ykd_A 267 KGFAGIVAASGQKLNIPFDLYDHPDSATAKQ--IDQQNGYRTCSLLCMPVFNG-------DQELIGVTQLVNKKKTGEFP 337 (398)
T ss_dssp SHHHHHHHHHCCCEEECSCGGGSTTCHHHHH--HHHHHTCCCCCEEEEEEECS-------SSCEEEEEEEEEECCSSCCC
T ss_pred CchhhHHhccCCeEEeccccccCcccCcccc--hhhhcCCeeeeEEEEeeecC-------CCCEEEEEEEEecCCccccc
Confidence 35788999998887665 5422111111100 00001224899999999731 12346999999888
Q ss_pred --------------ccccchhhHHHHHHHHHhhhh
Q 023595 258 --------------TYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 258 --------------~R~fT~kDe~WI~~iA~KL~~ 278 (280)
++.||+.|..-++.+|+.+..
T Consensus 338 ~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~ 372 (398)
T 1ykd_A 338 PYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGV 372 (398)
T ss_dssp CCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999987654
No 27
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=76.70 E-value=13 Score=29.28 Aligned_cols=108 Identities=17% Similarity=0.125 Sum_probs=73.4
Q ss_pred HHHHhhhccccEEEEEECCEEEE-eeecc---CCCCCChHHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCC
Q 023595 150 TYVLLRNTNSISVLISIRGELCV-RGYWQ---TPDGASKTQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGT 225 (280)
Q Consensus 150 s~~LLtnT~a~svlV~~~g~ll~-RG~~~---~p~~~~~g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~nt 225 (280)
.+.|...|.. .|.|.+..++++ -|.-. .+..+ ....++++++.+.....+- ..++--.+ .+ ...
T Consensus 8 AeiI~~~~~~-aV~ItD~~~ilA~~G~g~~~~~~~~i--s~~~~~~i~~~k~~~~~~~---~~~~~~~~---~~---~~~ 75 (123)
T 2w1r_A 8 ADALYDSLGH-SVLICDRDVYIAVSGSSKKDYLNKSI--SEMLERTMDQRSSVLESDA---KSVQLVNG---ID---EDM 75 (123)
T ss_dssp HHHHHHHHCS-EEEEECSSBEEEEESSCHHHHBTCBB--CHHHHHHHHHCSCEEESSC---EEEESBTT---CE---EEE
T ss_pred HHHHHHHHCC-eEEEEcCccEEEEEecChhhcCCCcc--CHHHHHHHHcCCEEEEcCC---ccccccCC---CC---CCe
Confidence 4678889999 999999999876 77511 12344 5568889998887766332 22322211 01 124
Q ss_pred ceeEEEeccCCCCCCcccccccceEEEEeeCCccccchhhHHHHHHHHHhhhh
Q 023595 226 CSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTYAYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 226 qsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R~fT~kDe~WI~~iA~KL~~ 278 (280)
.+.++.||-.+ .++-|+|.+-+. .+.+++.++.-.+++|+=|..
T Consensus 76 ~s~ii~PI~~~--------g~viG~i~l~~~-~~~~~~~~~~la~gla~lls~ 119 (123)
T 2w1r_A 76 NSYTVGPIVAN--------GDPIGAVVIFSK-DQTMGEVEHKAVETAAGFLAR 119 (123)
T ss_dssp SEEEEEEEEET--------TEEEEEEEEEES-SSCCCHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEEEC--------CEEEEEEEEEEc-CCCCCHHHHHHHHHHHHHHHH
Confidence 78899998763 245688888844 445999999999999987765
No 28
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=70.27 E-value=8.4 Score=32.74 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=38.2
Q ss_pred ccCCC-CCceeEEEec-cCCCCCCcccccccceEEEEeeCCcc-ccchhhHHHHHHHHHhhh
Q 023595 219 EMLPK-GTCSVFVQPV-IQAPNPSAVEVEKIEGFVLLASSMTY-AYSHKDRAWIKAVSNKFR 277 (280)
Q Consensus 219 ~~LP~-ntqsVlvQPi-g~~~~~~~~~~~~~~Gvlvlgs~s~R-~fT~kDe~WI~~iA~KL~ 277 (280)
...|. -|++|+|.|+ +.+ | +.=||+++.....- +|++.|..=++.+|.-+.
T Consensus 89 ~~~tg~~t~svl~vPL~~~~------g--~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a 142 (160)
T 3cit_A 89 LERPGTHLPCVLLLPLRGAD------E--GSFGTLVLANSVAISAPDGEDIESLQLLATLLA 142 (160)
T ss_dssp EECTTSSSCEEEEEEEECSS------S--SEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHH
T ss_pred ccccCcccceeEEEeeecCC------C--cEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHH
Confidence 34443 5899999999 452 2 44799888665555 899999999999987654
No 29
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=62.01 E-value=1.6 Score=44.84 Aligned_cols=86 Identities=14% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCc------c
Q 023595 186 QLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMT------Y 259 (280)
Q Consensus 186 ~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~------R 259 (280)
.++.++.++++...+.|..+...|+...+... ..-..++++++|.||-.+ + ..+.-|||.+....+ |
T Consensus 413 gi~g~v~~~g~~v~i~D~~~d~r~~~~~~~~~-g~~~~~~rS~L~vPL~~~-----~-~g~viGVL~l~~~~~~~~G~~~ 485 (878)
T 3bjc_A 413 MYAQYVKNTMEPLNIPDVSKDKRFPWTTENTG-NVNQQCIRSLLCTPIKNG-----K-KNKVIGVCQLVNKMEENTGKVK 485 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHhhcCCeeeecCccccccccccccccc-CccccccceEEEEEEecC-----C-CCcEEEEEEEEEcCCCcccCCC
Confidence 36677777777776665543333333222000 000035899999999762 0 023469999987666 7
Q ss_pred ccchhhHHHHHHHHHhhhh
Q 023595 260 AYSHKDRAWIKAVSNKFRD 278 (280)
Q Consensus 260 ~fT~kDe~WI~~iA~KL~~ 278 (280)
.||+.|+..++.+|+-+..
T Consensus 486 ~Ft~~d~~lL~~lA~~aai 504 (878)
T 3bjc_A 486 PFNRNDEQFLEAFVIFCGL 504 (878)
T ss_dssp -------------------
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999986643
No 30
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=59.45 E-value=1.9 Score=44.31 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc---ccc
Q 023595 186 QLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY---AYS 262 (280)
Q Consensus 186 ~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R---~fT 262 (280)
.++.++.++++.+.+.|..+...|+...+ ...-.++++++|.||-.. ..+.-|+|.+.+..++ .||
T Consensus 231 gi~g~v~~~g~pv~I~D~~~dp~f~~~~~----~~~~~~~~S~L~vPL~~~-------~g~viGvL~l~~~~~~~~~~ft 299 (878)
T 3bjc_A 231 GIVGHVAALGEPLNIKDAYEDPRFNAEVD----QITGYKTQSILCMPIKNH-------REEVVGVAQAINKKSGNGGTFT 299 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHhcCceEEeCCcccCcccccccc----cccCCccceEEEEeeEcC-------CCCEEEEEEEEecCCCCCCCCC
Confidence 47888888888887766643333433332 011235889999999651 1234799999987765 999
Q ss_pred hhhHHHHHHHHHhhhh
Q 023595 263 HKDRAWIKAVSNKFRD 278 (280)
Q Consensus 263 ~kDe~WI~~iA~KL~~ 278 (280)
+.|+.-++.+|+-+..
T Consensus 300 ~~D~~lL~~lA~~~a~ 315 (878)
T 3bjc_A 300 EKDEKDFAAYLAFCGI 315 (878)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999876543
No 31
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=52.59 E-value=19 Score=31.43 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=52.1
Q ss_pred HHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCc-cccchhh
Q 023595 187 LLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMT-YAYSHKD 265 (280)
Q Consensus 187 i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~-R~fT~kD 265 (280)
+|.++.++++...+.|..+ -|- .+ +-...-.+.+++++.||-.+ ...+.-|+|.+.+..+ +.||+.|
T Consensus 82 ~~g~~~~~~~~~~i~d~~~---~~~-~~--~~~~~~~~~~s~l~vPl~~~------~~~~~~Gvl~l~~~~~~~~f~~~d 149 (368)
T 1mc0_A 82 RLGQVVEDKQCIQLKDLTS---DDV-QQ--LQNMLGCELQAMLCVPVISR------ATDQVVALACAFNKLGGDFFTDED 149 (368)
T ss_dssp SHHHHHHHCCCEEGGGSCH---HHH-HH--HHHHHCSCCCCEEEEEEECT------TTCSEEEEEEEEEESSCSSCCSHH
T ss_pred HHHHHHhcCCeEEeccccc---ccc-cc--cccccCcccceEEEEEeecC------CCCcEEEEEEeecCCCCCCCCHHH
Confidence 6788899998887766632 121 11 00011124899999999751 0123469998776655 5699999
Q ss_pred HHHHHHHHHhhh
Q 023595 266 RAWIKAVSNKFR 277 (280)
Q Consensus 266 e~WI~~iA~KL~ 277 (280)
+..+..+|+-+.
T Consensus 150 ~~~l~~la~~~~ 161 (368)
T 1mc0_A 150 EHVIQHCFHYTG 161 (368)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998887654
No 32
>3im4_C Dual specificity A kinase-anchoring protein 2; four-helix bundle, acetylation, CAMP, CAMP-binding, disulfide bond, nucleotide-binding; 2.29A {Homo sapiens} PDB: 3tmh_D
Probab=49.36 E-value=4.9 Score=27.73 Aligned_cols=12 Identities=42% Similarity=0.850 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHH
Q 023595 139 SDALKENLAWAT 150 (280)
Q Consensus 139 sd~~k~ELAWas 150 (280)
+|..|+||||--
T Consensus 10 ~D~aqEEMAWqI 21 (45)
T 3im4_C 10 TDEAQEELAWKI 21 (45)
T ss_dssp -CHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 588999999953
No 33
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=45.63 E-value=11 Score=37.14 Aligned_cols=80 Identities=15% Similarity=0.122 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCC-ccccchh
Q 023595 186 QLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSM-TYAYSHK 264 (280)
Q Consensus 186 ~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s-~R~fT~k 264 (280)
.|+.++.++++++.+.|..+ -|.+.. .......+++++|.||..+ ...+.-|+|.+.... ++.||+.
T Consensus 81 Gi~g~v~~~~~pv~i~d~~~---~~~~~~---~~~~~~~~~S~L~vPI~~~------~~g~viGvL~l~~~~~~~~ft~~ 148 (691)
T 3ibj_A 81 GCLGQVVEDKKSIQLKDLTS---EDVQQL---QSMLGCELQAMLCVPVISR------ATDQVVALACAFNKLEGDLFTDE 148 (691)
T ss_dssp SSSHHHHHHCCCEEGGGSCH---HHHHHH---HHHHTSCCSCEEEEEEECS------SSCSEEEEEEEESBSSSCCCCTT
T ss_pred cHHHHHHHHCCeEEeccchh---cccccc---ccccCCccceEEEEEeEcC------CCCcEEEEEEEEcCCCCCCCCHH
Confidence 47889999999988877632 221111 1112234899999999761 012346998877654 4689999
Q ss_pred hHHHHHHHHHhhh
Q 023595 265 DRAWIKAVSNKFR 277 (280)
Q Consensus 265 De~WI~~iA~KL~ 277 (280)
|+.-++.+|.-+.
T Consensus 149 d~~lL~~la~~~a 161 (691)
T 3ibj_A 149 DEHVIQHCFHYTS 161 (691)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876543
No 34
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=39.42 E-value=39 Score=33.43 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=53.5
Q ss_pred HHHHHHhhhccccEEEEEECCEEEEeeeccCCCCCChHHHHHHHHHHhhhcccc--cCCCcccccCCccccccccCCCCC
Q 023595 148 WATYVLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLEWFERQIENIGLS--DLKDSLYFPQSADAGQWEMLPKGT 225 (280)
Q Consensus 148 Was~~LLtnT~a~svlV~~~g~ll~RG~~~~p~~~~~g~i~~r~~~~~~~~~L~--~L~~t~lyPgr~E~~~~~~LP~nt 225 (280)
-.+..|+.-..|.++.+|++|++..-|. +|+.-.-..+.+|+.+......+. +|. ..||+-.+ | .+-.
T Consensus 354 ~~~~~ll~l~~adG~al~~~~~~~~~G~--~P~~~~i~~l~~wl~~~~~~~v~~Td~L~--~~~p~a~~--~----~~~a 423 (520)
T 3zq5_A 354 NHPDRLLGLTGSQGAAICFGEKLILVGE--TPDEKAVQYLLQWLENREVQDVFFTSSLS--QIYPDAVN--F----KSVA 423 (520)
T ss_dssp TCHHHHHHTTTCSEEEEEETTEEEEEES--CCCHHHHHHHHHHHHHSCCCSCEEESCGG--GTSGGGGG--G----HHHH
T ss_pred hccHHHHhhhcCCeEEEEECCEEEEcCC--CCCHHHHHHHHHHHHhcCCCCeeEecchh--hhCcchhh--c----cccc
Confidence 4578899999999999999999888885 455555567888887765432221 222 24666544 2 2345
Q ss_pred ceeEEEeccC
Q 023595 226 CSVFVQPVIQ 235 (280)
Q Consensus 226 qsVlvQPig~ 235 (280)
.|+++.||..
T Consensus 424 ~G~lai~ls~ 433 (520)
T 3zq5_A 424 SGLLAIPIAR 433 (520)
T ss_dssp SEEEEEEETT
T ss_pred ceEEEEEeCC
Confidence 7899999865
No 35
>4gb7_A 6-aminohexanoate-dimer hydrolase; structural genomics, IDP05595, national institute of allergy and infectious diseases; HET: MSE; 1.60A {Bacillus anthracis}
Probab=34.62 E-value=54 Score=30.33 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=21.7
Q ss_pred HHHhhhccccEEEEEECCEEEEeeecc
Q 023595 151 YVLLRNTNSISVLISIRGELCVRGYWQ 177 (280)
Q Consensus 151 ~~LLtnT~a~svlV~~~g~ll~RG~~~ 177 (280)
...|..|.|.++||..+|+++.-.|++
T Consensus 102 ~~~l~~~~t~a~lV~k~GkIv~E~Y~~ 128 (422)
T 4gb7_A 102 KELLDDNKTDAFVVVHNGQLVYERYFN 128 (422)
T ss_dssp HHHHHHTTEEEEEEEETTEEEEEEECT
T ss_pred HHHHHhcCCCEEEEEECCEEEEEeCCC
Confidence 456788999999999999988744544
No 36
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=32.08 E-value=41 Score=33.09 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=48.7
Q ss_pred HHHHHHHHhhhccccEEEEEECCEEEEeeeccCCCCCChHHHHHHHHHHhhhcccccCCCcccccCCccccccccCCCCC
Q 023595 146 LAWATYVLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLEWFERQIENIGLSDLKDSLYFPQSADAGQWEMLPKGT 225 (280)
Q Consensus 146 LAWas~~LLtnT~a~svlV~~~g~ll~RG~~~~p~~~~~g~i~~r~~~~~~~~~L~~L~~t~lyPgr~E~~~~~~LP~nt 225 (280)
|.-.+..|+.-..|.+++||++|++...|. +|+.-.-..+.+|+.+....++-- + .||+-.+ ...+.+..
T Consensus 339 l~~~~~~l~~ll~adg~al~~~~~~~~~G~--~P~~~~i~~l~~wl~~~~~~v~~T---d--~~p~a~~---~~~~~~~~ 408 (505)
T 3nhq_A 339 LAHPDDGIAALIPCDGALVMLGGRTLSIRG--DFERQAGNVLQRLQRDPERDIYHT---D--NWPQPSE---DSPDGGDC 408 (505)
T ss_dssp HHCTTTSHHHHTTCSEEEEEETTEEEEESS--CCHHHHHHHHHHHHTCTTCSEEEE---S--CC--------------CC
T ss_pred HHHhhHHHHHHhCCCeEEEEECCeEEecCC--CCCHHHHHHHHHHHHhcCCCeEEe---C--CCcchhh---cccccccc
Confidence 334466677778999999999999888885 444434456677776555442221 2 6775332 11135788
Q ss_pred ceeEEEeccC
Q 023595 226 CSVFVQPVIQ 235 (280)
Q Consensus 226 qsVlvQPig~ 235 (280)
.||++.||.+
T Consensus 409 ~G~lai~ls~ 418 (505)
T 3nhq_A 409 CGVLAIRFHR 418 (505)
T ss_dssp CEEEEEEEET
T ss_pred ceEEEEEecC
Confidence 9999999975
No 37
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=22.65 E-value=47 Score=33.25 Aligned_cols=89 Identities=16% Similarity=0.181 Sum_probs=57.2
Q ss_pred ccCchHHHHHHHHHHHHHHhhhccccEEEEEECCEEEEeeeccCCCCCChHHHHH----HHHHHhhhcccccCCCccccc
Q 023595 135 SQNISDALKENLAWATYVLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLE----WFERQIENIGLSDLKDSLYFP 210 (280)
Q Consensus 135 ~~~Lsd~~k~ELAWas~~LLtnT~a~svlV~~~g~ll~RG~~~~p~~~~~g~i~~----r~~~~~~~~~L~~L~~t~lyP 210 (280)
....++++.+||..||.+ .+.|..-+|++..+|+++--|. +.++.=.-++ ++....+...|+.- .+||
T Consensus 403 ~~~pt~~e~~dL~fAw~v-~K~vkSNAIv~akdg~tvGiGa----GQ~sRV~s~r~A~~kAg~~~~G~vlaSD---AFFP 474 (523)
T 3zzm_A 403 GSPADPATLTDLVFAWRA-CRAVKSNAIVIAADGATVGVGM----GQVNRVDAARLAVERGGERVRGAVAASD---AFFP 474 (523)
T ss_dssp SSCCCHHHHHHHHHHHHH-GGGSCSSCEEEEETTEEEEEEC----SCSSHHHHHHHHHHHHGGGCTTCEEEES---SCCS
T ss_pred CCCcCHHHHHHHHHHHHH-HHhccCceEEEEECCeEEEECC----CCcchHHHHHHHHHHhccccCCeEEEec---cCcC
Confidence 456899999999999876 5889999999999999987776 4444422222 22222344556444 6877
Q ss_pred CCccccccc-cCCCCCceeEEEeccC
Q 023595 211 QSADAGQWE-MLPKGTCSVFVQPVIQ 235 (280)
Q Consensus 211 gr~E~~~~~-~LP~ntqsVlvQPig~ 235 (280)
=+.. -+ .--.|.. -++||=|+
T Consensus 475 F~D~---ve~aa~aGv~-aIiQPGGS 496 (523)
T 3zzm_A 475 FPDG---LETLAAAGVT-AVVHPGGS 496 (523)
T ss_dssp SHHH---HHHHHHTTCC-EEEECCCC
T ss_pred CCcc---HHHHHHcCCE-EEECCCCC
Confidence 6532 11 1223444 46899554
No 38
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=21.75 E-value=1.8e+02 Score=29.17 Aligned_cols=89 Identities=18% Similarity=0.123 Sum_probs=55.1
Q ss_pred cCchHHHHHHHHHHHHHHhhhccccEEEEEECCEEEEeeeccCCCCCChHHHHHHHHHHh-------hhcccccCCCccc
Q 023595 136 QNISDALKENLAWATYVLLRNTNSISVLISIRGELCVRGYWQTPDGASKTQLLEWFERQI-------ENIGLSDLKDSLY 208 (280)
Q Consensus 136 ~~Lsd~~k~ELAWas~~LLtnT~a~svlV~~~g~ll~RG~~~~p~~~~~g~i~~r~~~~~-------~~~~L~~L~~t~l 208 (280)
...++++.+||..||.+ .+.|..-+|++..+|+++--|. +.++.=.-++.+.++. +...|+.- .+
T Consensus 412 ~~pt~~e~~DL~FAw~v-~K~vKSNAIv~akdg~tvGiGa----GQ~sRV~s~r~A~~kA~~~g~~~~G~vlASD---AF 483 (534)
T 4ehi_A 412 REASKEELKDLEIAMKI-AAFTKSNNVVYVKNGAMVAIGM----GMTSRIDAAKAAIAKAKEMGLDLQGCVLASE---AF 483 (534)
T ss_dssp BCCCHHHHHHHHHHHHH-HHHSCSSCEEEEETTEEEEEEC----SSSCHHHHHHHHHHHHHHTTCCCTTCEEECS---SC
T ss_pred CCCCHHHHHHHHHHHHH-HHhcCCceEEEEeCCeEEEECC----CCcchHHHHHHHHHHHHhhccCCCCeEEEec---cc
Confidence 34689999999999987 6899999999999999987776 4555433333333333 22344333 56
Q ss_pred ccCCccccccccCCCCCceeEEEeccC
Q 023595 209 FPQSADAGQWEMLPKGTCSVFVQPVIQ 235 (280)
Q Consensus 209 yPgr~E~~~~~~LP~ntqsVlvQPig~ 235 (280)
||=+.. .-.---.|.. -++||=|+
T Consensus 484 FPF~D~--ve~Aa~aGV~-aIiQPGGS 507 (534)
T 4ehi_A 484 FPFRDS--IDEASKVGVK-AIVEPGGS 507 (534)
T ss_dssp CCSTHH--HHHHHHTTCC-EEEECCCC
T ss_pred cCCCcc--HHHHHHcCCE-EEECCCCC
Confidence 665432 0011223433 46899554
No 39
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=21.56 E-value=66 Score=19.44 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=16.6
Q ss_pred cccchhhHHHHHHHHHhhh
Q 023595 259 YAYSHKDRAWIKAVSNKFR 277 (280)
Q Consensus 259 R~fT~kDe~WI~~iA~KL~ 277 (280)
|++|..|+.=|+.|-+++.
T Consensus 2 rgltsrdrrriarwekria 20 (26)
T 1hji_B 2 RGLTSRDRRRIARWEKRIA 20 (26)
T ss_dssp CSSCHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHHHHH
Confidence 7899999999999988765
No 40
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=20.48 E-value=1.1e+02 Score=25.97 Aligned_cols=111 Identities=18% Similarity=0.254 Sum_probs=65.0
Q ss_pred HHHHhhhccccEEEEE-ECCE---EE-EeeeccCCC-----------CCChHHHHHHHHHHhhhcccccCCCcccccCCc
Q 023595 150 TYVLLRNTNSISVLIS-IRGE---LC-VRGYWQTPD-----------GASKTQLLEWFERQIENIGLSDLKDSLYFPQSA 213 (280)
Q Consensus 150 s~~LLtnT~a~svlV~-~~g~---ll-~RG~~~~p~-----------~~~~g~i~~r~~~~~~~~~L~~L~~t~lyPgr~ 213 (280)
|..|-+--+|+=.+|| .|-+ .- .|-+ +-|+ .-.|-++++...++-+-.-+.+-.-..+|+..-
T Consensus 22 ~rll~k~~~~~w~~vy~~drerrdf~~~rs~-~~pa~~l~~~r~mpl~p~k~pllk~~lr~~~hll~~dp~~s~l~tp~l 100 (162)
T 3eea_A 22 SRLLRKLVKTRWIAVYFFDRERRDFAPARST-GLPASFLPVFREMPLAPDKIPLLKSMLRKRQHLMLTDPGSSDLLTPKL 100 (162)
T ss_dssp HHHHHHHSCCSEEEEEEECC--CSEEEEEEE-SCCGGGHHHHHHCCBCTTTCHHHHHHHHHTCCEEESCGGGCTTSCHHH
T ss_pred HHHHHHHhCCceEEEEEeehhhhcccccccc-CCchhhhHHHhhCCCCCCccHHHHHHHHhcCccccCCCCcchhccHHH
Confidence 6677777777777776 3433 22 3665 4443 224455677666654433222111111222211
Q ss_pred cccccccCCCCCceeEEEeccCCCCCCcccccccceEEEEeeCCcc-ccchhhHHHHHHHHHh
Q 023595 214 DAGQWEMLPKGTCSVFVQPVIQAPNPSAVEVEKIEGFVLLASSMTY-AYSHKDRAWIKAVSNK 275 (280)
Q Consensus 214 E~~~~~~LP~ntqsVlvQPig~~~~~~~~~~~~~~Gvlvlgs~s~R-~fT~kDe~WI~~iA~K 275 (280)
- -+- +--.++..|+--+ ..+=||+.++-.+.| .||..|.+=+..+|+-
T Consensus 101 ~-----k~~-~~~~ILgVPL~~g--------~qVIGVLFaArR~~R~~Fs~dEiALL~SLAah 149 (162)
T 3eea_A 101 R-----KLL-RNLCVLAVPMVVR--------TQVIGAVFMARTRDNPPFSDAETAIIRDLVSH 149 (162)
T ss_dssp H-----HHT-TTEEEEEEEEEET--------TEEEEEEEEEEETTSCCCCHHHHHHHHHHHHH
T ss_pred H-----HHH-hhCeEEEecceeC--------CEEEEEEEEecccccCCCCHHHHHHHHHHHHH
Confidence 0 011 2237899997553 233699999999999 9999999999988864
Done!