Query 023596
Match_columns 280
No_of_seqs 114 out of 338
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 05:13:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05208 hypothetical protein; 100.0 1.1E-43 2.4E-48 309.3 19.6 163 93-279 2-168 (168)
2 TIGR00645 HI0507 conserved hyp 100.0 2.8E-41 6E-46 294.0 19.0 160 96-279 1-164 (167)
3 PF03350 UPF0114: Uncharacteri 100.0 9.3E-38 2E-42 259.1 15.1 124 103-244 1-124 (124)
4 COG2862 Predicted membrane pro 100.0 4.3E-35 9.3E-40 255.5 16.7 162 94-279 2-166 (169)
5 COG0805 TatC Sec-independent p 63.1 22 0.00049 33.6 6.4 98 116-240 111-210 (255)
6 COG3223 Predicted membrane pro 49.9 31 0.00068 30.1 4.6 42 235-276 93-134 (138)
7 CHL00066 psbH photosystem II p 44.4 74 0.0016 25.1 5.5 22 61-82 14-35 (73)
8 PLN00055 photosystem II reacti 40.9 92 0.002 24.6 5.5 22 61-82 14-35 (73)
9 PF01618 MotA_ExbB: MotA/TolQ/ 34.2 2E+02 0.0043 23.9 7.0 39 148-186 90-128 (139)
10 COG1704 LemA Uncharacterized c 31.2 1.7E+02 0.0037 26.8 6.5 57 108-164 3-60 (185)
11 TIGR02797 exbB tonB-system ene 29.9 3.5E+02 0.0077 24.3 8.4 77 106-186 115-192 (211)
12 PRK02833 phosphate-starvation- 29.6 3.5E+02 0.0076 22.9 12.6 29 244-272 98-126 (133)
13 PF12430 ABA_GPCR: Abscisic ac 29.3 2.6E+02 0.0056 25.0 7.4 62 105-173 81-144 (196)
14 PRK02624 psbH photosystem II r 27.4 1.3E+02 0.0028 23.2 4.3 13 70-82 11-23 (64)
15 PF13572 DUF4134: Domain of un 27.3 2.6E+02 0.0057 22.8 6.4 49 222-270 45-94 (98)
16 PF13314 DUF4083: Domain of un 26.6 44 0.00095 25.3 1.6 44 164-231 8-52 (58)
17 PF00737 PsbH: Photosystem II 25.7 1.8E+02 0.0039 21.6 4.6 39 71-135 9-47 (52)
18 PF07578 LAB_N: Lipid A Biosyn 25.4 2.2E+02 0.0049 22.2 5.4 32 100-131 4-49 (72)
19 PF07423 DUF1510: Protein of u 22.6 53 0.0012 30.4 1.7 22 163-184 17-38 (217)
20 PRK04214 rbn ribonuclease BN/u 22.4 7.5E+02 0.016 24.4 9.8 48 91-142 82-129 (412)
21 cd03381 PAP2_glucose_6_phospha 21.6 1.8E+02 0.0039 27.1 5.0 93 115-219 108-210 (235)
22 PF12273 RCR: Chitin synthesis 21.2 60 0.0013 26.9 1.6 12 108-119 1-12 (130)
23 COG3431 Predicted membrane pro 21.1 5.5E+02 0.012 22.3 9.8 33 247-279 107-139 (142)
24 PF07096 DUF1358: Protein of u 20.4 5.6E+02 0.012 22.1 7.5 37 165-230 84-120 (124)
25 PRK10921 twin-arginine protein 20.4 4E+02 0.0087 24.9 7.1 93 118-238 110-204 (258)
No 1
>PRK05208 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=309.26 Aligned_cols=163 Identities=19% Similarity=0.267 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHH
Q 023596 93 FRSIESNIERLIFDFRFLALLAVGGSLAGSLLCF-LNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVML 171 (280)
Q Consensus 93 ~~~iE~~iEr~L~~sR~l~llaVigsLlgsvlLF-i~G~~~i~~~~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLL 171 (280)
.+++|+.+|+++|+|||++ +||++++++++.+| ++++.|++|...+... .++++++..++++||+||+|++|+
T Consensus 2 ~~~~e~~~E~~l~~sRwl~-~pv~~gLi~a~~l~~~~f~~el~~~~~~~~~-----~~~~~~il~vl~lIDl~Lia~lLl 75 (168)
T PRK05208 2 IKRMERIIERLIFASRWLQ-APLYLGLSLALAVLVYKFFQELWHLLPHVFS-----LDESDLILVVLSLIDVVLVANLLV 75 (168)
T ss_pred cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999997 79999999999999 9999999988888765 778899999999999999999999
Q ss_pred HHhhhceeecccCCCCCCCCccccccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHHHHHhhhcccccch
Q 023596 172 IFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATG 251 (280)
Q Consensus 172 IF~~GLYELFISkid~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~ffe~fl~v~~~~~ 251 (280)
||++|+|||||||+|.+++ +++|+||+++|+||||+||++|||||++|+|||++++++..++
T Consensus 76 Iv~~ggYElFISkid~~~~------------------~~~p~wL~~~~l~~LK~KL~~vIV~Is~V~llk~fl~~~~~~~ 137 (168)
T PRK05208 76 MVIFSGYENFVSRLDIDGH------------------PDEPEWLGKVDASSLKVKLAASIVAISSIHLLKTFMNADNYSD 137 (168)
T ss_pred HHHhhhHHHhhccCccccC------------------CCCCccceecCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCH
Confidence 9999999999999997655 5689999999999999999999999999999999999999999
Q ss_pred hhHHHHHH---HHHHHHHHHHHHHhhCCCCC
Q 023596 252 MDLLSYSI---CIFLSSASLYILHHLHKPEA 279 (280)
Q Consensus 252 ~dLL~~~~---aIllsslaL~ll~Kl~~~~~ 279 (280)
.+++|+.+ +++++++.+++++|+.++.|
T Consensus 138 ~~~~w~~~ihl~fv~s~~~~a~~d~l~~~~h 168 (168)
T PRK05208 138 NKLMWQVIIHLTFVVSALLMAYTDRLTRKSH 168 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999986 99999999999999998765
No 2
>TIGR00645 HI0507 conserved hypothetical transmembrane protein. This conserved hypothetical protein with four predicted transmembrane regions is found in E. coli, Haemophilus influenzae, and Helicobacter pylori, among completed genomes. A similar protein from Aquifex aeolicus appears to share a central region of homology and a similar overall arrangement of hydrophobic stretches, and forms a bidirectional best hit with several members of the seed alignment. However, it is uncertain whether the observed similarity represents full-length homology and/or equivalent function, and so it is excluded from the seed and scores below the trusted cutoff.
Probab=100.00 E-value=2.8e-41 Score=294.03 Aligned_cols=160 Identities=18% Similarity=0.277 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 023596 96 IESNIERLIFDFRFLALLAVGGSLAGSLLCF-LNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFG 174 (280)
Q Consensus 96 iE~~iEr~L~~sR~l~llaVigsLlgsvlLF-i~G~~~i~~~~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLLIF~ 174 (280)
+|+.+|+++|+|||+ ++||++++++++.++ ++++.++++.+.+. .+.++++++..++++||+||+|++|+||+
T Consensus 1 ~e~~~E~~l~~SRwl-l~pvy~gLi~a~~l~~~~f~~el~~~~~~~-----~~~~~~~~il~vl~lID~~Lia~lLlIv~ 74 (167)
T TIGR00645 1 QENIIEKIIFASRWL-LAPIYLGLSLTLVILSYKFIKELWHLLINV-----NDMDENDLMLGVLNLVDVVMIAGLLVMVT 74 (167)
T ss_pred ChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999 668888888777752 22223444433322 34678899999999999999999999999
Q ss_pred hhceeecccCCCCCCCCccccccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHHHHHhhhcccccchhhH
Q 023596 175 MGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMDL 254 (280)
Q Consensus 175 ~GLYELFISkid~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~ffe~fl~v~~~~~~dL 254 (280)
+|+|||||||+|.+++ +++|+||+++|+||||+||++|||||++|+|||+|++.+..+..++
T Consensus 75 ~ggYElFISkid~~~~------------------~~~p~wL~~~~l~~LK~KL~~vIV~Is~I~lLk~fl~~~~~~~~~~ 136 (167)
T TIGR00645 75 IGGYEIFVSKLDTRNH------------------PEQPEWLSHVDATVLKVKVSMSIVAISSIHLLQTFMNASNMPENTM 136 (167)
T ss_pred hccHhHhhccCccccC------------------CCCCCceeecCHHHHHHHHHHHHHHHhHHHHHHHHHhhhhCCHHHH
Confidence 9999999999998765 5689999999999999999999999999999999999999999999
Q ss_pred HHHHH---HHHHHHHHHHHHHhhCCCCC
Q 023596 255 LSYSI---CIFLSSASLYILHHLHKPEA 279 (280)
Q Consensus 255 L~~~~---aIllsslaL~ll~Kl~~~~~ 279 (280)
+|+.+ +++++++++++++|+.++.|
T Consensus 137 ~w~~~ih~~fv~s~~~~a~~d~~~~~~~ 164 (167)
T TIGR00645 137 MWQVLIHLGFVVSAIALAYTDKILYSSN 164 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99986 99999999999999998654
No 3
>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes.
Probab=100.00 E-value=9.3e-38 Score=259.06 Aligned_cols=124 Identities=41% Similarity=0.709 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhceeecc
Q 023596 103 LIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFI 182 (280)
Q Consensus 103 ~L~~sR~l~llaVigsLlgsvlLFi~G~~~i~~~~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLLIF~~GLYELFI 182 (280)
++|+|||+++++|+|+++|+++||++|+.++++++.++++....+.++++++..+++++|+||+|++++||++|+|||||
T Consensus 1 ~l~~sR~l~~~~vig~l~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~~~g~YelFI 80 (124)
T PF03350_consen 1 LLFASRWLVLPAVIGLLLGSVLLFVKGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIFAFGLYELFI 80 (124)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeeE
Confidence 48999999999999999999999999999999999999986666778889999999999999999999999999999999
Q ss_pred cCCCCCCCCccccccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHHHHHhhh
Q 023596 183 SNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSK 244 (280)
Q Consensus 183 Skid~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~ffe~fl 244 (280)
|++|.+++ +++|+||+++|+||||+||++|||||++|+|||+++
T Consensus 81 s~~~~~~~------------------~~~p~wL~i~s~~~LK~KL~~vIV~Il~V~~l~~~~ 124 (124)
T PF03350_consen 81 SKLDIAEH------------------DDRPKWLGIRSLDDLKLKLGSVIVMILVVHFLKKFI 124 (124)
T ss_pred eccccccc------------------CcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99987765 468999999999999999999999999999999975
No 4
>COG2862 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.3e-35 Score=255.46 Aligned_cols=162 Identities=24% Similarity=0.348 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 023596 94 RSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIF 173 (280)
Q Consensus 94 ~~iE~~iEr~L~~sR~l~llaVigsLlgsvlLFi~G~~~i~~~~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLLIF 173 (280)
+++|+++||+||++||+.+ ||+.+++.++.+|.+++. +.+.+.+.+.. .+++.++++.++++||++|+|++++|+
T Consensus 2 ~~~e~~~e~~i~~SRwll~-pv~~gLi~al~lf~~~f~---~~i~~~~~~~~-~~~e~~lil~~l~liDl~Lva~lLvmv 76 (169)
T COG2862 2 SMLEKIIERLIFASRWLLA-PVYLGLIVALVLFAYKFF---KEIWHLLPNLF-DMGENDLILAALSLVDLLLVAGLLVMV 76 (169)
T ss_pred CCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHcccc-ccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999997775 888888888888887743 23333333332 245889999999999999999999999
Q ss_pred hhhceeecccCCCCCCCCccccccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHHHHHhhhcccccchhh
Q 023596 174 GMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMFERSKMVTIATGMD 253 (280)
Q Consensus 174 ~~GLYELFISkid~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~ffe~fl~v~~~~~~d 253 (280)
++|+|||||||+|.++ +++|+||++.|++|||+|++++||+|++|+|||+|++.+..++..
T Consensus 77 ~~g~YelFVskLd~~~-------------------~~~~~wL~~~d~~~LK~Kl~~sIV~IssV~~L~~fl~~~~~~~~~ 137 (169)
T COG2862 77 SFGGYELFVSKLDIAE-------------------EDKPSWLGIVDLSDLKQKLAASIVAISSVHLLKVFLNAKNLSDNK 137 (169)
T ss_pred HHhhHHHHHhhccccc-------------------ccccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHhchhhCCchh
Confidence 9999999999998764 257999999999999999999999999999999999999976767
Q ss_pred HHHHHH---HHHHHHHHHHHHHhhCCCCC
Q 023596 254 LLSYSI---CIFLSSASLYILHHLHKPEA 279 (280)
Q Consensus 254 LL~~~~---aIllsslaL~ll~Kl~~~~~ 279 (280)
++||.+ ++++++..+.+.+|+++++|
T Consensus 138 ~~~~~~ihl~fv~sa~~~~~~dr~~~~~~ 166 (169)
T COG2862 138 LMWFVIIHLTFVLSALYLAYKDRLEKKSH 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 777754 89999999999999998876
No 5
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=63.06 E-value=22 Score=33.58 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhc-eeecccCCCCCCCCcc
Q 023596 116 GGSLAGSLLCFLNGCIYIVDAYK-VYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGL-YGLFISNVPPNVAPNV 193 (280)
Q Consensus 116 igsLlgsvlLFi~G~~~i~~~~~-~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLLIF~~GL-YELFISkid~~~~~~~ 193 (280)
...+.+|.+||+.|+...|..+. ..+..... ..+ .......--+|.|+==...+++++|+ +|+=+=-.
T Consensus 111 ~~~~~~s~~LF~~G~~faYfvv~P~~~~F~~~-~~~-~~~~~~~~~i~~y~~f~l~l~~~FGv~FElPvv~~-------- 180 (255)
T COG0805 111 LPLLIPSFVLFLLGAAFAYFVVFPLVFKFLLS-FAA-PDGVSPALSISKYLSFVLTLLLAFGVAFELPVVIV-------- 180 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-ccceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 45677888888888887666544 22222111 111 11122334578888888889999998 77532211
Q ss_pred ccccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHHHH
Q 023596 194 DRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKMF 240 (280)
Q Consensus 194 d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~ff 240 (280)
.-.|+++.+-+.||+|=-.+|++++++..+
T Consensus 181 -----------------~L~~~Giv~~~~L~~~rr~~iv~~fViaav 210 (255)
T COG0805 181 -----------------LLTRLGIVTPETLKKKRRYAIVAAFVIAAI 210 (255)
T ss_pred -----------------HHHHcCCccHHHHHHcCCeeeehHHHHHHH
Confidence 235899999999999988888888777643
No 6
>COG3223 Predicted membrane protein [Function unknown]
Probab=49.85 E-value=31 Score=30.09 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHhhCC
Q 023596 235 LLVKMFERSKMVTIATGMDLLSYSICIFLSSASLYILHHLHK 276 (280)
Q Consensus 235 L~V~ffe~fl~v~~~~~~dLL~~~~aIllsslaL~ll~Kl~~ 276 (280)
.+++-+-|.+-+..+++.|.++++++|++..+++++..+-..
T Consensus 93 iGITAiiRLiIvdH~~~~~~ll~s~AILlLvi~l~l~~~~~~ 134 (138)
T COG3223 93 IGITAIIRLIIVDHESPIDTLLYSGAILLLVIALFLVNSKRL 134 (138)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhhcc
Confidence 355555666677888999999999999999999999877654
No 7
>CHL00066 psbH photosystem II protein H
Probab=44.37 E-value=74 Score=25.09 Aligned_cols=22 Identities=5% Similarity=0.163 Sum_probs=15.5
Q ss_pred CCCCCcccccCCCCCCCccccc
Q 023596 61 PPSKPFAESSRQHDPSFNYARA 82 (280)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
+..++.-.--+|.|++|+-+..
T Consensus 14 ~~~T~lG~lLKPLNSeyGkvap 35 (73)
T CHL00066 14 PRRTTVGNLLKPLNSEYGKVAP 35 (73)
T ss_pred CccccccccccccccccCcccC
Confidence 3444555566889999998854
No 8
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=40.89 E-value=92 Score=24.57 Aligned_cols=22 Identities=5% Similarity=0.149 Sum_probs=15.0
Q ss_pred CCCCCcccccCCCCCCCccccc
Q 023596 61 PPSKPFAESSRQHDPSFNYARA 82 (280)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~ 82 (280)
+..++.-.--+|.|++|+-+..
T Consensus 14 ~~~T~lG~lLKPLNSeyGkvap 35 (73)
T PLN00055 14 PRRTIVGDLLKPLNSEYGKVAP 35 (73)
T ss_pred CccccccccccccccccCcccC
Confidence 3444555556888999998854
No 9
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=34.20 E-value=2e+02 Score=23.89 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=32.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhceeecccCCC
Q 023596 148 VHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISNVP 186 (280)
Q Consensus 148 ~~~~~lIl~lIeaIDlfLIgtVLLIF~~GLYELFISkid 186 (280)
.+...+..++-++.+..+.|.++=|+++-.|..+-++.+
T Consensus 90 ~~~~~l~~gi~~Al~tT~~GL~vai~~~~~~~~l~~~~~ 128 (139)
T PF01618_consen 90 GDPSQLAGGISVALITTAYGLVVAIPALPFYNYLKRRVE 128 (139)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678889999999999999999999988888777654
No 10
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=31.23 E-value=1.7e+02 Score=26.79 Aligned_cols=57 Identities=28% Similarity=0.337 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc-cchhHHHHHHHHHHHH
Q 023596 108 RFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGV-HTGKMVLRLVEAIDVY 164 (280)
Q Consensus 108 R~l~llaVigsLlgsvlLFi~G~~~i~~~~~~~~~~~~~~~-~~~~lIl~lIeaIDlf 164 (280)
||+.+++++..+..-+.|.+.+.+..=+...+.|....... .+.|+|-.+++.+--|
T Consensus 3 ~~~i~l~vi~il~ll~~~~yN~lv~~~~~v~~awSqI~vqlqrR~DLiPNLVetVKgY 60 (185)
T COG1704 3 RFLIILAVIVILLLLAVGGYNGLVKLREAVKEAWSQIDVQLQRRADLIPNLVETVKGY 60 (185)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888877777778888888888888888887543222 2447888888877654
No 11
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=29.93 E-value=3.5e+02 Score=24.32 Aligned_cols=77 Identities=18% Similarity=0.145 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhceeecccC
Q 023596 106 DFRFLALLAVGGSLAGSLLCFLNGCI-YIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGLYGLFISN 184 (280)
Q Consensus 106 ~sR~l~llaVigsLlgsvlLFi~G~~-~i~~~~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLLIF~~GLYELFISk 184 (280)
-.|++.+++.+++..=-+.| .|++ -++++|..+-. ..+.+...+..++=|++=..-.|.+.=|.++-.|-.|.++
T Consensus 115 le~~l~~L~ti~~~APllGL--LGTV~Gmi~aF~~ia~--~g~~~~~~lA~GI~eALitTA~GL~VAIPAli~yn~f~~r 190 (211)
T TIGR02797 115 MSRGTGVLATIGATAPFVGL--FGTVWGIMNSFIGISK--SQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARS 190 (211)
T ss_pred HHcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhh--CCCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666776666555544 3443 23445544421 1223444567788888888888999999999999999998
Q ss_pred CC
Q 023596 185 VP 186 (280)
Q Consensus 185 id 186 (280)
++
T Consensus 191 i~ 192 (211)
T TIGR02797 191 IA 192 (211)
T ss_pred HH
Confidence 75
No 12
>PRK02833 phosphate-starvation-inducible protein PsiE; Provisional
Probab=29.58 E-value=3.5e+02 Score=22.94 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=24.9
Q ss_pred hcccccchhhHHHHHHHHHHHHHHHHHHH
Q 023596 244 KMVTIATGMDLLSYSICIFLSSASLYILH 272 (280)
Q Consensus 244 l~v~~~~~~dLL~~~~aIllsslaL~ll~ 272 (280)
+-+...++.|+++.++++++.++++++.+
T Consensus 98 iIv~h~~~~~~l~~~~aIl~L~i~~~v~~ 126 (133)
T PRK02833 98 IIVDHESPMDTLLYAGAILLLVIALFLAN 126 (133)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556689999999999999999999984
No 13
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=29.31 E-value=2.6e+02 Score=25.03 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc--chhHHHHHHHHHHHHHHHHHHHHH
Q 023596 105 FDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVH--TGKMVLRLVEAIDVYLAGTVMLIF 173 (280)
Q Consensus 105 ~~sR~l~llaVigsLlgsvlLFi~G~~~i~~~~~~~~~~~~~~~~--~~~lIl~lIeaIDlfLIgtVLLIF 173 (280)
..+|++.++-+.+.+++++==|.... ..++...+.... ..-+++-+=|+.-+|.++++++|-
T Consensus 81 ~~s~~ISf~L~g~l~~~S~r~vl~t~-------~~~~~~~~~~~~~~~~~~~L~laelmGiY~iSt~lLlR 144 (196)
T PF12430_consen 81 SWSRQISFLLSGVLFVTSIRGVLTTF-------SKFFRALPSSLSLSSNILVLFLAELMGIYFISTVLLLR 144 (196)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777777666666666655444322 223333333333 225677788999999999999984
No 14
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=27.39 E-value=1.3e+02 Score=23.18 Aligned_cols=13 Identities=0% Similarity=0.082 Sum_probs=10.3
Q ss_pred cCCCCCCCccccc
Q 023596 70 SRQHDPSFNYARA 82 (280)
Q Consensus 70 ~~~~~~~~~~~~~ 82 (280)
-||.||+|+-+..
T Consensus 11 LkpLNSEyGKVaP 23 (64)
T PRK02624 11 LKPLNSEYGKVVP 23 (64)
T ss_pred ccccccccCcccC
Confidence 4788999998853
No 15
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=27.34 E-value=2.6e+02 Score=22.83 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccch-hhHHHHHHHHHHHHHHHHH
Q 023596 222 ELKTKVGHVIVMILLVKMFERSKMVTIATG-MDLLSYSICIFLSSASLYI 270 (280)
Q Consensus 222 dLK~KL~~VIVmIL~V~ffe~fl~v~~~~~-~dLL~~~~aIllsslaL~l 270 (280)
+|=-.++.|+-.|-+++...+.=+=+.+.. .-+.|++.|++++.++..+
T Consensus 45 ~l~yaI~aVvglIGai~VY~k~~~Gd~dv~k~i~~w~GaciFli~~a~~l 94 (98)
T PF13572_consen 45 KLMYAIGAVVGLIGAIRVYIKWNNGDQDVKKSIMSWFGACIFLIVAATVL 94 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666667776666421111111 1279999999999888665
No 16
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=26.60 E-value=44 Score=25.28 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhhc-eeecccCCCCCCCCccccccccCccccccccccCCccceecChHHHHHHHHHHH
Q 023596 164 YLAGTVMLIFGMGL-YGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVI 231 (280)
Q Consensus 164 fLIgtVLLIF~~GL-YELFISkid~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VI 231 (280)
|.++++.+++.+|. +.+||.++-... --+..+.+++.+||=.+|
T Consensus 8 y~~~Vi~l~vl~~~~Ftl~IRri~~~s------------------------~~kkq~~~~~eqKLDrII 52 (58)
T PF13314_consen 8 YYILVIILIVLFGASFTLFIRRILINS------------------------NAKKQDVDSMEQKLDRII 52 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc------------------------cccccchhHHHHHHHHHH
Confidence 45555555554444 678999874321 114456778889988876
No 17
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=25.67 E-value=1.8e+02 Score=21.59 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=22.2
Q ss_pred CCCCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023596 71 RQHDPSFNYARANPAGDSPLGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVD 135 (280)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~iE~~iEr~L~~sR~l~llaVigsLlgsvlLFi~G~~~i~~ 135 (280)
+|.|++|+.+.. +-|. -++.|...+.+.+|+.-..+||+
T Consensus 9 KpLNSeyGkVaP------GWGT--------------------tplM~~~m~lf~vfl~iiL~IyN 47 (52)
T PF00737_consen 9 KPLNSEYGKVAP------GWGT--------------------TPLMGVFMALFAVFLLIILEIYN 47 (52)
T ss_dssp CCCCCSTT--BS------TTTT--------------------HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccCCCcCC------Cccc--------------------hHHHHHHHHHHHHHHHHHHHHhc
Confidence 677999988744 3333 25555666666666655555553
No 18
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=25.37 E-value=2.2e+02 Score=22.25 Aligned_cols=32 Identities=38% Similarity=0.476 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q 023596 100 IERLIFDFRFLA--------------LLAVGGSLAGSLLCFLNGCI 131 (280)
Q Consensus 100 iEr~L~~sR~l~--------------llaVigsLlgsvlLFi~G~~ 131 (280)
+-.++|.+||+. ..-=..|++|+++++++|..
T Consensus 4 ~gq~lF~~Rf~~QW~~SEk~k~sv~P~~FW~lSl~Gs~lll~Y~i~ 49 (72)
T PF07578_consen 4 IGQLLFSSRFIVQWIYSEKAKKSVVPVAFWYLSLIGSLLLLIYAII 49 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 456889999886 22227899999999998875
No 19
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=22.56 E-value=53 Score=30.44 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhceeecccC
Q 023596 163 VYLAGTVMLIFGMGLYGLFISN 184 (280)
Q Consensus 163 lfLIgtVLLIF~~GLYELFISk 184 (280)
-.|||+|+|.+++-+|-+|+..
T Consensus 17 NiaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 17 NIAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred HHHHHHHHHHHHHHhhhheecC
Confidence 3589999999999999999955
No 20
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=22.44 E-value=7.5e+02 Score=24.38 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=27.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023596 91 GFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWT 142 (280)
Q Consensus 91 ~~~~~iE~~iEr~L~~sR~l~llaVigsLlgsvlLFi~G~~~i~~~~~~~~~ 142 (280)
+..+.+...++++.-+..-+..++++.++.++..+| ..+-+++-..|+
T Consensus 82 ~~~~~i~~~l~~~~~~~~~l~~ig~~~ll~ta~~~~----~~ie~a~N~Iw~ 129 (412)
T PRK04214 82 QAARSVFDYLNQFREQAGRLTAAGSVALVVTLLILL----HTIEQTFNRIWR 129 (412)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH----HHHHHHHHHHhC
Confidence 334556667777766655566666666666665543 223344555554
No 21
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=21.65 E-value=1.8e+02 Score=27.10 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHH--------HHHHHHHHHH-Hhhhce-eecccC
Q 023596 115 VGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAID--------VYLAGTVMLI-FGMGLY-GLFISN 184 (280)
Q Consensus 115 VigsLlgsvlLFi~G~~~i~~~~~~~~~~~~~~~~~~~lIl~lIeaID--------lfLIgtVLLI-F~~GLY-ELFISk 184 (280)
.+.-++..++.+..+.-.+| ...|+.++...|.--|-.+..+..-++ .|+.-+++++ |++|.| -+..=.
T Consensus 108 ~~~~~~~~~~~~~V~~SRvY-LgvHfpsDVlaG~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~y~~~~~~g 186 (235)
T cd03381 108 VMLWLVFWGVQLAVCLSRIY-LAAHFPHQVIAGVISGIAVAETFSHIRYIYSASLKRYVLITFFLFGFALGFYLLLKWLG 186 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhC
Q ss_pred CCCCCCCccccccccCccccccccccCCccceecC
Q 023596 185 VPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISS 219 (280)
Q Consensus 185 id~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~s 219 (280)
+|+... .++|.|==. +|+|+++.+
T Consensus 187 vd~~ws--~~~a~kwc~---------~p~~~~~~t 210 (235)
T cd03381 187 VDLLWS--LEKAFKWCE---------RPEWVHIDT 210 (235)
T ss_pred CCchhh--HHHHHhccC---------CCceECCCC
No 22
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=21.21 E-value=60 Score=26.93 Aligned_cols=12 Identities=8% Similarity=0.227 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 023596 108 RFLALLAVGGSL 119 (280)
Q Consensus 108 R~l~llaVigsL 119 (280)
||++++.+|..+
T Consensus 1 RW~l~~iii~~i 12 (130)
T PF12273_consen 1 RWVLFAIIIVAI 12 (130)
T ss_pred CeeeHHHHHHHH
Confidence 777764444433
No 23
>COG3431 Predicted membrane protein [Function unknown]
Probab=21.10 E-value=5.5e+02 Score=22.25 Aligned_cols=33 Identities=6% Similarity=0.060 Sum_probs=24.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 023596 247 TIATGMDLLSYSICIFLSSASLYILHHLHKPEA 279 (280)
Q Consensus 247 ~~~~~~dLL~~~~aIllsslaL~ll~Kl~~~~~ 279 (280)
++.+..++..+++.+.+.+...|++....+.+.
T Consensus 107 ~~~~~~~~~al~~vl~aL~v~~~~l~~~e~~~~ 139 (142)
T COG3431 107 GKFEILSLIALALVLLALGVIRVLLSIKEGTDR 139 (142)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhhccCCc
Confidence 344567788888888888888888875555543
No 24
>PF07096 DUF1358: Protein of unknown function (DUF1358); InterPro: IPR009792 This family consists of several hypothetical eukaryotic proteins of around 125 residues in length. The function of this family is unknown.
Probab=20.38 E-value=5.6e+02 Score=22.09 Aligned_cols=37 Identities=24% Similarity=0.391 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhceeecccCCCCCCCCccccccccCccccccccccCCccceecChHHHHHHHHHH
Q 023596 165 LAGTVMLIFGMGLYGLFISNVPPNVAPNVDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHV 230 (280)
Q Consensus 165 LIgtVLLIF~~GLYELFISkid~~~~~~~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~V 230 (280)
-.|++.-+.++|+.-++|-+ +++++|++|.+.|...+
T Consensus 84 gWGTlyA~~GvG~l~~~iwK-----------------------------~~Gv~~~~eFr~km~si 120 (124)
T PF07096_consen 84 GWGTLYAVCGVGVLVFGIWK-----------------------------LSGVKNLKEFREKMGSI 120 (124)
T ss_pred hHHHHHHHHhHHHHHHHHHH-----------------------------HhccCcHHHHHHHHHhh
Confidence 46888888999987777765 78999999999998764
No 25
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=20.37 E-value=4e+02 Score=24.95 Aligned_cols=93 Identities=20% Similarity=0.316 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhhccCccchhHHHHHHHHHHHHHHHHHHHHHhhhc-eeecccCCCCCCCCcccc
Q 023596 118 SLAGSLLCFLNGCIYIVDA-YKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTVMLIFGMGL-YGLFISNVPPNVAPNVDR 195 (280)
Q Consensus 118 sLlgsvlLFi~G~~~i~~~-~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtVLLIF~~GL-YELFISkid~~~~~~~d~ 195 (280)
-+..+.++|+.|+...|.. +...++.... .. .+- ....--+|.|+-=+..+++++|+ +|+-+=-.
T Consensus 110 ~~~~s~~LF~~G~~f~y~~vlP~~~~Fl~~-f~-~~~-~~~~~~i~~Y~~fv~~~~l~fGl~FelPli~~---------- 176 (258)
T PRK10921 110 LLVSSSLLFYIGMAFAYFVVFPLAFGFLAK-TA-PEG-VQVSTDIASYLSFVMALFMAFGVSFEVPVAIV---------- 176 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-hhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 3445667777777665443 2333332211 11 111 22333578888777778888888 66644322
Q ss_pred ccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHH
Q 023596 196 ALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVK 238 (280)
Q Consensus 196 ~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~ 238 (280)
.-..+++.+.+.||.+=-.+++.+.++.
T Consensus 177 ---------------~L~~~giv~~~~l~~~Rr~~~v~~~iia 204 (258)
T PRK10921 177 ---------------LLCWMGVTTPEDLRKKRPYVLVGAFVVG 204 (258)
T ss_pred ---------------HHHHcCCCCHHHHHhcCcHHhHHHHHHH
Confidence 1236677888888876666666665554
Done!