Query 023596
Match_columns 280
No_of_seqs 114 out of 338
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:32:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rrl_A FLIK, flagellar HOOK-le 29.5 1.5E+02 0.0052 25.2 7.1 13 94-106 69-81 (169)
2 3s8f_C Cytochrome C oxidase po 28.8 21 0.00072 23.3 1.2 23 162-184 11-33 (34)
3 3arc_H Photosystem II reaction 20.9 1.1E+02 0.0038 22.6 3.9 12 71-82 11-22 (65)
4 1vry_A Glycine receptor alpha- 20.5 56 0.0019 24.5 2.3 31 155-185 29-62 (76)
5 2knc_B Integrin beta-3; transm 19.1 2E+02 0.0067 21.4 5.1 27 114-140 12-38 (79)
6 2k9j_B Integrin beta-3; transm 19.0 2.1E+02 0.0073 19.0 5.3 28 113-140 10-37 (43)
7 4b4a_A TATC, SEC-independent p 15.4 2.1E+02 0.0073 25.3 5.3 95 117-239 102-200 (249)
8 1ifk_A Inovirus; helical virus 10.7 1.8E+02 0.0062 20.5 2.6 16 229-244 32-47 (51)
9 2jp3_A FXYD domain-containing 10.2 2.4E+02 0.0082 20.9 3.3 18 116-133 19-36 (67)
10 2qjy_A Cytochrome B; cytochrom 9.6 1.1E+03 0.037 22.8 8.7 16 225-240 328-343 (445)
No 1
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=29.48 E-value=1.5e+02 Score=25.25 Aligned_cols=13 Identities=0% Similarity=-0.036 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 023596 94 RSIESNIERLIFD 106 (280)
Q Consensus 94 ~~iE~~iEr~L~~ 106 (280)
+.-+.+-|++.|.
T Consensus 69 ~w~qqL~qqI~~~ 81 (169)
T 2rrl_A 69 EWQQTFSQQVMLF 81 (169)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445555665543
No 2
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=28.76 E-value=21 Score=23.29 Aligned_cols=23 Identities=22% Similarity=0.605 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhhceeecccC
Q 023596 162 DVYLAGTVMLIFGMGLYGLFISN 184 (280)
Q Consensus 162 DlfLIgtVLLIF~~GLYELFISk 184 (280)
-++++|..++++=+|.|-+|+++
T Consensus 11 ~V~ilg~~I~i~W~~vf~lFl~R 33 (34)
T 3s8f_C 11 VILVLTLTILVFWLGVYAVFFAR 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHeeeecC
Confidence 45788889999999999999875
No 3
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=20.91 E-value=1.1e+02 Score=22.59 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=9.4
Q ss_pred CCCCCCCccccc
Q 023596 71 RQHDPSFNYARA 82 (280)
Q Consensus 71 ~~~~~~~~~~~~ 82 (280)
+|.||+|+.+..
T Consensus 11 KpLNSeyGKvaP 22 (65)
T 3arc_H 11 RPLNSEYGKVAP 22 (65)
T ss_dssp GGGGCCTTCCBS
T ss_pred cccccccCcccC
Confidence 678999998844
No 4
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=20.50 E-value=56 Score=24.54 Aligned_cols=31 Identities=35% Similarity=0.597 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-e--eecccCC
Q 023596 155 LRLVEAIDVYLAGTVMLIFGMGL-Y--GLFISNV 185 (280)
Q Consensus 155 l~lIeaIDlfLIgtVLLIF~~GL-Y--ELFISki 185 (280)
..-+.++|.|+.+-.+++|+-=+ | -+|+++.
T Consensus 29 VSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~ 62 (76)
T 1vry_A 29 VSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRK 62 (76)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44789999999999999998655 2 2455553
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=19.05 E-value=2e+02 Score=21.43 Aligned_cols=27 Identities=19% Similarity=0.080 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023596 114 AVGGSLAGSLLCFLNGCIYIVDAYKVY 140 (280)
Q Consensus 114 aVigsLlgsvlLFi~G~~~i~~~~~~~ 140 (280)
+++++.++++++....++-+|+.+..+
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~~~i 38 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666555555566655444
No 6
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=19.00 E-value=2.1e+02 Score=18.96 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023596 113 LAVGGSLAGSLLCFLNGCIYIVDAYKVY 140 (280)
Q Consensus 113 laVigsLlgsvlLFi~G~~~i~~~~~~~ 140 (280)
.+++++.++++++....+.-+|+.+..+
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~~~~i 37 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKLLITI 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 4566667777777666666677776544
No 7
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=15.36 E-value=2.1e+02 Score=25.32 Aligned_cols=95 Identities=15% Similarity=0.230 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhccCccchhHHHHHHH--HHHHHHHHHHHHHHhhhc-eeecccCCCCCCCCc
Q 023596 117 GSLAGSLLCFLNGCIYIVDA-YKVYWTSCVKGVHTGKMVLRLVE--AIDVYLAGTVMLIFGMGL-YGLFISNVPPNVAPN 192 (280)
Q Consensus 117 gsLlgsvlLFi~G~~~i~~~-~~~~~~~~~~~~~~~~lIl~lIe--aIDlfLIgtVLLIF~~GL-YELFISkid~~~~~~ 192 (280)
..+.++..||+.|+...|-. +...++.... ...+. + ...- -+|.|+-=++.+++++|+ +|+-+=-.
T Consensus 102 ~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~-~~~~~-i-~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~------- 171 (249)
T 4b4a_A 102 PLLLGSILLFMLGALFAYFIVLPLALKFLLG-LGFTQ-L-LATPYLSVDMYISFVLKLVVAFGIAFEMPIVLY------- 171 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC-SSSTT-S-SSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhh-h-HhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 44566777788887665533 3344442221 11111 1 1111 356676666777777777 66654321
Q ss_pred cccccccCccccccccccCCccceecChHHHHHHHHHHHHHHHHHHH
Q 023596 193 VDRALKGSSLFGMFSLKERPKWMKISSLDELKTKVGHVIVMILLVKM 239 (280)
Q Consensus 193 ~d~~~~~s~~~g~f~l~~~P~WL~I~slddLK~KL~~VIVmIL~V~f 239 (280)
.-.++++.|.+.||.+=-.+|+.+.++.-
T Consensus 172 ------------------~L~~~Giv~~~~l~~~Rr~~iv~~~v~aA 200 (249)
T 4b4a_A 172 ------------------VLQKAGVITPEQLASFRKYFIVIAFVIGA 200 (249)
T ss_dssp ------------------HHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHcCCcCHHHHHHHhHHHHHHHHHHHH
Confidence 22477888999999998888888776653
No 8
>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} SCOP: h.1.4.1 PDB: 1nh4_A 2c0w_A 2c0x_A
Probab=10.72 E-value=1.8e+02 Score=20.49 Aligned_cols=16 Identities=19% Similarity=0.270 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhh
Q 023596 229 HVIVMILLVKMFERSK 244 (280)
Q Consensus 229 ~VIVmIL~V~ffe~fl 244 (280)
.+++.-++|++||+|-
T Consensus 32 ~vv~a~~gIKlFKKf~ 47 (51)
T 1ifk_A 32 LVVGATVGIKLFKKFV 47 (51)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehhhhhHHHhhhc
Confidence 3455568999999984
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=10.16 E-value=2.4e+02 Score=20.88 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023596 116 GGSLAGSLLCFLNGCIYI 133 (280)
Q Consensus 116 igsLlgsvlLFi~G~~~i 133 (280)
+|.|+-+.++|+.|...+
T Consensus 19 igGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 19 LGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ecchhhHHHHHHHHHHHH
Confidence 466666777778777654
No 10
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=9.62 E-value=1.1e+03 Score=22.83 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 023596 225 TKVGHVIVMILLVKMF 240 (280)
Q Consensus 225 ~KL~~VIVmIL~V~ff 240 (280)
+|+++|+.+.+.+..+
T Consensus 328 nKlgGVial~~siliL 343 (445)
T 2qjy_A 328 AKFFGVLAMFGAILVM 343 (445)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH
Confidence 8999999877655443
Done!