Query 023596
Match_columns 280
No_of_seqs 114 out of 338
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 09:32:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023596.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023596hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axth1 f.23.33.1 (H:2-65) Pho 25.1 61 0.0045 22.1 5.0 12 71-82 11-22 (64)
2 d1xmec1 f.23.9.1 (C:2-34) Bact 13.6 1.3E+02 0.0094 17.7 4.3 23 112-134 7-29 (33)
3 d1q90b_ f.21.1.2 (B:) Cytochro 12.1 1.9E+02 0.014 23.3 6.0 48 225-272 84-132 (212)
4 d1ppjc1 f.32.1.1 (C:261-379) M 10.2 1.5E+02 0.011 21.7 4.4 30 211-240 9-41 (119)
5 d2odka1 d.306.1.1 (A:1-51) Hyp 10.0 50 0.0037 21.0 1.3 18 215-232 1-18 (51)
6 d2e9xb1 a.278.1.2 (B:62-173) D 8.1 43 0.0031 24.5 0.4 15 212-226 2-16 (112)
7 d1oedc_ f.36.1.1 (C:) Acetylch 7.7 1.9E+02 0.014 22.1 4.3 23 108-130 231-253 (260)
8 d3cx5c2 f.21.1.2 (C:1-261) Mit 7.6 3.3E+02 0.024 22.3 6.0 48 223-270 81-129 (261)
9 d2bcqa2 a.60.12.1 (A:329-385) 6.8 74 0.0054 20.9 1.0 12 215-226 27-38 (57)
10 d1zy3a1 f.1.4.1 (A:1-170) Apop 6.6 2.9E+02 0.021 20.9 4.9 79 90-190 76-155 (170)
No 1
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=25.14 E-value=61 Score=22.10 Aligned_cols=12 Identities=8% Similarity=0.241 Sum_probs=9.7
Q ss_pred CCCCCCCccccc
Q 023596 71 RQHDPSFNYARA 82 (280)
Q Consensus 71 ~~~~~~~~~~~~ 82 (280)
+|.|++|+-+..
T Consensus 11 kplNSeyGKVaP 22 (64)
T d2axth1 11 RPLNSEYGKVAP 22 (64)
T ss_dssp TTTTTCSSCCCS
T ss_pred cccccccCcccC
Confidence 678999998854
No 2
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=13.63 E-value=1.3e+02 Score=17.70 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023596 112 LLAVGGSLAGSLLCFLNGCIYIV 134 (280)
Q Consensus 112 llaVigsLlgsvlLFi~G~~~i~ 134 (280)
.++|+.-+.--++.|+.|...++
T Consensus 7 al~vi~il~l~ilvfw~gv~avf 29 (33)
T d1xmec1 7 ALAVILVLTLTILVFWLGVYAVF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777888888876543
No 3
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.14 E-value=1.9e+02 Score=23.25 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHH-HHHHHHHHHHHHH
Q 023596 225 TKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSI-CIFLSSASLYILH 272 (280)
Q Consensus 225 ~KL~~VIVmIL~V~ffe~fl~v~~~~~~dLL~~~~-aIllsslaL~ll~ 272 (280)
.-=++..++++.+|+++.+.--.+..+.++.|..+ .+++...+..++-
T Consensus 84 ~~gAs~~~~~~~lHm~r~~~~gsyk~pre~~W~~Gv~l~~l~m~~aftG 132 (212)
T d1q90b_ 84 RWSASMMVLMMVLHVFRVYLTGGFKRPRELTWVTGVIMAVCTVSFGVTG 132 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHcCcccCcccceehHhHHHHHHHHHHHHhh
Confidence 33467788889999999987777788999999875 4555555555543
No 4
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.18 E-value=1.5e+02 Score=21.69 Aligned_cols=30 Identities=20% Similarity=0.572 Sum_probs=19.0
Q ss_pred CCccceecChHHHH---HHHHHHHHHHHHHHHH
Q 023596 211 RPKWMKISSLDELK---TKVGHVIVMILLVKMF 240 (280)
Q Consensus 211 ~P~WL~I~slddLK---~KL~~VIVmIL~V~ff 240 (280)
.|+|.=--=-.=|| +|+++|+.|+.++-.|
T Consensus 9 ~PEWYFL~~YaiLRsipnK~gGvl~m~~si~il 41 (119)
T d1ppjc1 9 KPEWYFLFAYAILRSIPNKLGGVLALAFSILIL 41 (119)
T ss_dssp CCCGGGHHHHHHHHTCSSHHHHHHHHHHHHHGG
T ss_pred CcchHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 47775432222222 5999999999877544
No 5
>d2odka1 d.306.1.1 (A:1-51) Hypothetical protein NE2111 {Nitrosomonas europaea [TaxId: 915]}
Probab=10.01 E-value=50 Score=21.05 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=14.7
Q ss_pred ceecChHHHHHHHHHHHH
Q 023596 215 MKISSLDELKTKVGHVIV 232 (280)
Q Consensus 215 L~I~slddLK~KL~~VIV 232 (280)
|++-++.|.|.+|..++=
T Consensus 1 M~~~s~seAk~~ls~ll~ 18 (51)
T d2odka1 1 MHVWPVQDAKARFSEFLD 18 (51)
T ss_dssp CCEEEHHHHHHTHHHHHH
T ss_pred CceEeHHHHHHHHHHHHH
Confidence 466789999999998763
No 6
>d2e9xb1 a.278.1.2 (B:62-173) DNA replication complex GINS protein PSF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.15 E-value=43 Score=24.55 Aligned_cols=15 Identities=27% Similarity=1.004 Sum_probs=11.7
Q ss_pred CccceecChHHHHHH
Q 023596 212 PKWMKISSLDELKTK 226 (280)
Q Consensus 212 P~WL~I~slddLK~K 226 (280)
|.||.+..+.+++..
T Consensus 2 P~Wl~ve~L~~~~~~ 16 (112)
T d2e9xb1 2 PEWMDVEKLEKMRDH 16 (112)
T ss_dssp CTTCCHHHHHHHHHH
T ss_pred CccccHHHHHHHHHH
Confidence 789988887777664
No 7
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.66 E-value=1.9e+02 Score=22.13 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023596 108 RFLALLAVGGSLAGSLLCFLNGC 130 (280)
Q Consensus 108 R~l~llaVigsLlgsvlLFi~G~ 130 (280)
|++.++.++..+++.+.+|+.+.
T Consensus 231 Rlfl~lF~i~~vi~ti~ifl~~~ 253 (260)
T d1oedc_ 231 RLSMFIITPVMVLGTIFIFVMGN 253 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 44555556666777777877664
No 8
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.57 E-value=3.3e+02 Score=22.29 Aligned_cols=48 Identities=13% Similarity=0.079 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHH-HHHHHHHHHHH
Q 023596 223 LKTKVGHVIVMILLVKMFERSKMVTIATGMDLLSYSI-CIFLSSASLYI 270 (280)
Q Consensus 223 LK~KL~~VIVmIL~V~ffe~fl~v~~~~~~dLL~~~~-aIllsslaL~l 270 (280)
+-..=+...++.+.+|+++.+.-=.+..++++.|..+ .+.+...+..+
T Consensus 81 ~H~~ga~~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af 129 (261)
T d3cx5c2 81 LHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAF 129 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHH
Confidence 3344577888889999999988777888899988865 34444444443
No 9
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.77 E-value=74 Score=20.88 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=10.2
Q ss_pred ceecChHHHHHH
Q 023596 215 MKISSLDELKTK 226 (280)
Q Consensus 215 L~I~slddLK~K 226 (280)
.++++++|||.+
T Consensus 27 ~Gi~ti~dLr~~ 38 (57)
T d2bcqa2 27 QGFRSLEDIRSQ 38 (57)
T ss_dssp TTCCSHHHHHHH
T ss_pred hCCCCHHHHHhc
Confidence 468999999986
No 10
>d1zy3a1 f.1.4.1 (A:1-170) Apoptosis regulator Bcl-w {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.58 E-value=2.9e+02 Score=20.91 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=51.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchhHHHHHHHHHHHHHHHHH
Q 023596 90 LGFFRSIESNIERLIFDFRFLALLAVGGSLAGSLLCFLNGCIYIVDAYKVYWTSCVKGVHTGKMVLRLVEAIDVYLAGTV 169 (280)
Q Consensus 90 ~~~~~~iE~~iEr~L~~sR~l~llaVigsLlgsvlLFi~G~~~i~~~~~~~~~~~~~~~~~~~lIl~lIeaIDlfLIgtV 169 (280)
..+...++++|+.-+-..|.++++++.|.+..=+. . ++ ..+.+..+++.+=.||--.+
T Consensus 76 ~~f~~Va~elF~dginWGRIVal~~F~g~la~~~~-----------------~---~~--~~~~v~~i~~~~~~fl~~~l 133 (170)
T d1zy3a1 76 QRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESV-----------------N---KE--MEVLVGQVQEWMVAYLETRL 133 (170)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH-----------------H---TT--CHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-----------------H---cC--CchHHHHHHHHHHHHHHHhH
Confidence 44455677788887888898888777665532111 0 11 23566677777767766553
Q ss_pred -HHHHhhhceeecccCCCCCCC
Q 023596 170 -MLIFGMGLYGLFISNVPPNVA 190 (280)
Q Consensus 170 -LLIF~~GLYELFISkid~~~~ 190 (280)
==|--=|+++-|+...+.+..
T Consensus 134 ~~WI~~~GGW~gf~~~f~~~~~ 155 (170)
T d1zy3a1 134 ADWIHSSGGWAEFTALYGDGAL 155 (170)
T ss_dssp HHHHHHHTTTHHHHHHSSCSSC
T ss_pred HHHHHHcCCHHHHHHHHcccch
Confidence 358888999999988765444
Done!