Query 023597
Match_columns 280
No_of_seqs 264 out of 784
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:14:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1616 Protein involved in Sn 100.0 4.3E-53 9.3E-58 394.8 17.3 227 52-280 37-289 (289)
2 PF04739 AMPKBI: 5'-AMP-activa 100.0 2.9E-35 6.3E-40 236.7 4.3 86 192-278 2-100 (100)
3 cd02859 AMPKbeta_GBD_like AMP- 99.9 1.7E-26 3.6E-31 177.4 10.0 79 94-172 1-79 (79)
4 cd02861 E_set_proteins_like E 99.8 1.4E-18 3.1E-23 133.4 9.7 76 95-171 2-81 (82)
5 cd02858 Esterase_N_term Estera 99.1 2.9E-10 6.3E-15 88.2 9.4 73 97-170 8-83 (85)
6 cd02688 E_set E or "early" set 98.8 3E-08 6.5E-13 73.4 8.2 70 96-165 5-77 (83)
7 PF02922 CBM_48: Carbohydrate- 98.3 1E-06 2.2E-11 66.9 5.1 56 96-151 12-74 (85)
8 cd02854 Glycogen_branching_enz 98.3 3.3E-06 7.2E-11 67.7 8.1 61 97-157 7-82 (99)
9 cd02860 Pullulanase_N_term Pul 97.5 0.00036 7.7E-09 55.1 7.3 62 97-160 10-84 (100)
10 PF00686 CBM_20: Starch bindin 97.5 0.00038 8.3E-09 54.6 6.5 53 95-147 2-68 (96)
11 cd05814 CBM20_Prei4 Prei4, N-t 97.4 0.00092 2E-08 54.9 7.9 45 104-148 14-67 (120)
12 cd02855 Glycogen_branching_enz 97.3 0.0027 5.9E-08 49.6 9.4 52 97-148 23-80 (106)
13 cd05808 CBM20_alpha_amylase Al 97.3 0.00091 2E-08 51.9 6.6 44 104-147 13-63 (95)
14 cd05818 CBM20_water_dikinase P 97.2 0.0022 4.7E-08 50.4 8.4 53 95-147 2-61 (92)
15 PLN02447 1,4-alpha-glucan-bran 97.2 0.00085 1.8E-08 70.9 7.5 60 96-156 115-189 (758)
16 cd02856 Glycogen_debranching_e 97.2 0.0016 3.4E-08 51.8 6.9 52 97-150 11-67 (103)
17 COG0296 GlgB 1,4-alpha-glucan 97.1 0.00082 1.8E-08 69.6 6.1 56 95-151 36-96 (628)
18 cd05809 CBM20_beta_amylase Bet 97.0 0.0034 7.5E-08 49.8 7.8 54 94-147 2-68 (99)
19 cd05820 CBM20_novamyl Novamyl 96.9 0.007 1.5E-07 48.5 8.6 54 94-147 2-70 (103)
20 PRK12313 glycogen branching en 96.9 0.0037 8.1E-08 64.5 8.4 57 96-152 39-101 (633)
21 cd02852 Isoamylase_N_term Isoa 96.7 0.0045 9.7E-08 50.3 6.4 54 97-152 9-73 (119)
22 PRK12568 glycogen branching en 96.7 0.0039 8.6E-08 65.8 7.6 61 96-157 139-208 (730)
23 PRK14705 glycogen branching en 96.7 0.0037 8.1E-08 69.2 7.6 53 96-149 639-696 (1224)
24 PRK14706 glycogen branching en 96.5 0.0058 1.3E-07 63.6 7.2 53 96-149 39-95 (639)
25 cd05813 CBM20_genethonin_1 Gen 96.4 0.0099 2.2E-07 46.5 6.4 44 104-147 14-62 (95)
26 PRK05402 glycogen branching en 96.4 0.011 2.3E-07 62.3 8.5 56 96-151 132-194 (726)
27 cd05811 CBM20_glucoamylase Glu 96.4 0.014 3E-07 46.4 6.8 56 92-147 4-73 (106)
28 cd05816 CBM20_DPE2_repeat2 Dis 96.3 0.04 8.7E-07 43.6 9.2 45 103-147 12-64 (99)
29 cd05807 CBM20_CGTase CGTase, C 96.2 0.035 7.7E-07 44.0 8.4 54 94-147 2-70 (101)
30 PRK05402 glycogen branching en 96.0 0.016 3.4E-07 61.0 6.9 53 97-151 30-87 (726)
31 cd05810 CBM20_alpha_MTH Glucan 96.0 0.028 6E-07 44.7 6.8 44 104-147 14-64 (97)
32 cd05817 CBM20_DSP Dual-specifi 96.0 0.017 3.6E-07 45.9 5.4 46 102-147 10-62 (100)
33 cd05467 CBM20 The family 20 ca 95.8 0.023 5E-07 43.8 5.7 46 102-147 10-65 (96)
34 TIGR01515 branching_enzym alph 95.6 0.035 7.6E-07 57.4 7.5 61 96-157 29-99 (613)
35 TIGR02402 trehalose_TreZ malto 95.5 0.049 1.1E-06 55.6 8.1 59 97-160 1-63 (542)
36 cd02853 MTHase_N_term Maltooli 95.2 0.07 1.5E-06 40.8 6.4 58 97-158 10-70 (85)
37 PF03423 CBM_25: Carbohydrate 95.2 0.12 2.7E-06 40.4 7.6 54 96-149 3-70 (87)
38 cd05806 CBM20_laforin Laforin 93.7 0.37 8E-06 39.8 7.6 51 97-147 7-74 (112)
39 cd05815 CBM20_DPE2_repeat1 Dis 93.4 0.66 1.4E-05 36.6 8.5 44 104-147 12-65 (101)
40 TIGR02104 pulA_typeI pullulana 92.9 0.28 6.2E-06 50.6 7.2 60 97-158 21-92 (605)
41 PLN02316 synthase/transferase 90.8 1.3 2.9E-05 48.8 9.7 86 89-178 323-423 (1036)
42 PLN02950 4-alpha-glucanotransf 90.4 1.7 3.7E-05 47.4 10.0 69 90-158 148-233 (909)
43 PF01357 Pollen_allerg_1: Poll 88.8 1.9 4.1E-05 33.3 6.6 62 91-155 10-78 (82)
44 PLN02316 synthase/transferase 88.4 1.3 2.9E-05 48.9 7.3 63 94-156 153-228 (1036)
45 TIGR02100 glgX_debranch glycog 88.3 1.1 2.3E-05 47.5 6.4 53 97-151 16-75 (688)
46 cd02857 CD_pullulan_degrading_ 88.1 3.5 7.5E-05 32.4 7.9 55 93-147 16-79 (116)
47 PLN02950 4-alpha-glucanotransf 87.2 3.3 7E-05 45.3 9.4 56 92-147 6-74 (909)
48 PLN02960 alpha-amylase 86.4 0.91 2E-05 49.3 4.6 54 95-148 129-198 (897)
49 TIGR02102 pullulan_Gpos pullul 85.5 3.9 8.3E-05 45.7 9.0 61 97-157 329-405 (1111)
50 PF11806 DUF3327: Domain of un 85.2 2.9 6.2E-05 34.8 6.2 82 95-176 2-115 (122)
51 PRK10439 enterobactin/ferric e 82.9 6.9 0.00015 38.7 8.8 88 91-178 35-166 (411)
52 PRK03705 glycogen debranching 80.0 4.6 9.9E-05 42.6 6.7 53 97-151 21-78 (658)
53 TIGR02103 pullul_strch alpha-1 80.0 4.8 0.00011 44.0 7.0 51 97-148 137-193 (898)
54 PRK14510 putative bifunctional 74.0 6.7 0.00014 44.2 6.2 53 97-151 25-84 (1221)
55 COG3794 PetE Plastocyanin [Ene 73.0 9.8 0.00021 32.3 5.7 49 94-144 61-111 (128)
56 PLN03244 alpha-amylase; Provis 68.8 6.9 0.00015 42.5 4.7 49 92-140 129-186 (872)
57 PF02903 Alpha-amylase_N: Alph 64.8 25 0.00054 28.4 6.3 65 92-156 20-99 (120)
58 PLN02877 alpha-amylase/limit d 63.2 17 0.00038 40.1 6.5 51 96-148 223-280 (970)
59 KOG0045 Cytosolic Ca2+-depende 58.4 9.2 0.0002 40.2 3.3 28 136-163 114-144 (612)
60 TIGR02657 amicyanin amicyanin. 53.1 30 0.00066 26.2 4.6 49 95-144 19-69 (83)
61 PRK10785 maltodextrin glucosid 48.3 80 0.0017 32.8 8.2 59 92-150 18-87 (598)
62 KOG0470 1,4-alpha-glucan branc 48.1 14 0.0003 39.7 2.6 38 97-135 115-157 (757)
63 TIGR03009 plancto_dom_2 Planct 47.0 26 0.00056 32.1 3.9 17 145-161 67-85 (210)
64 PF03370 CBM_21: Putative phos 46.9 79 0.0017 25.6 6.4 59 92-150 18-99 (113)
65 TIGR02375 pseudoazurin pseudoa 46.4 60 0.0013 26.8 5.7 47 92-144 20-71 (116)
66 PF11896 DUF3416: Domain of un 44.6 54 0.0012 29.4 5.5 38 116-154 56-99 (187)
67 TIGR03102 halo_cynanin halocya 43.4 64 0.0014 26.6 5.4 49 94-144 49-99 (115)
68 PF03422 CBM_6: Carbohydrate b 43.0 27 0.00059 27.7 3.1 21 130-150 91-111 (125)
69 smart00606 CBD_IV Cellulose Bi 38.3 38 0.00081 27.2 3.3 21 130-150 99-119 (129)
70 PF13473 Cupredoxin_1: Cupredo 38.2 56 0.0012 25.5 4.2 48 92-144 40-91 (104)
71 smart00230 CysPc Calpain-like 32.9 49 0.0011 31.5 3.6 26 135-160 97-125 (318)
72 PLN00115 pollen allergen group 30.5 1.8E+02 0.004 24.3 6.2 52 102-155 44-99 (118)
73 PF08308 PEGA: PEGA domain; I 29.6 1.6E+02 0.0034 21.2 5.1 42 98-150 5-46 (71)
74 cd00503 Frataxin Frataxin is a 28.8 35 0.00076 27.7 1.6 20 136-156 64-83 (105)
75 TIGR03503 conserved hypothetic 28.7 1.1E+02 0.0024 30.5 5.3 25 126-150 169-195 (374)
76 KOG1263 Multicopper oxidases [ 28.1 42 0.00092 35.0 2.4 39 128-166 98-142 (563)
77 TIGR03422 mito_frataxin fratax 27.8 43 0.00092 27.0 1.9 18 138-156 66-83 (97)
78 cd00044 CysPc Calpains, domain 27.8 65 0.0014 30.3 3.5 26 135-160 105-133 (315)
79 PF14347 DUF4399: Domain of un 26.5 1.3E+02 0.0028 23.7 4.4 33 126-159 49-81 (87)
80 PLN03023 Expansin-like B1; Pro 25.3 1.8E+02 0.0039 27.3 5.8 56 95-154 162-226 (247)
81 PRK00446 cyaY frataxin-like pr 23.6 85 0.0018 25.6 2.9 25 128-156 58-82 (105)
82 PF00648 Peptidase_C2: Calpain 22.2 76 0.0017 29.4 2.8 22 138-159 87-111 (298)
83 COG3397 Uncharacterized protei 20.8 3.1E+02 0.0067 26.7 6.5 72 94-174 113-206 (308)
84 PF01491 Frataxin_Cyay: Fratax 20.3 1.6E+02 0.0035 23.8 4.0 24 132-156 62-86 (109)
85 COG1477 ApbE Membrane-associat 20.3 1.8E+02 0.0039 28.5 4.9 50 105-154 201-260 (337)
86 PF07483 W_rich_C: Tryptophan- 20.1 3E+02 0.0065 22.7 5.5 58 93-154 19-77 (109)
No 1
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.3e-53 Score=394.78 Aligned_cols=227 Identities=35% Similarity=0.516 Sum_probs=201.4
Q ss_pred CCCCcCCCCccCCCCCCCcccccchhhhhhccc-cccccccccceEEEEEecCCCceEEEEeccCCCccCccceeeCCe-
Q 023597 52 PPPIFTSQVPMDPLPRSGDLMQVRNHAAERSMA-YYEELSYEKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKD- 129 (280)
Q Consensus 52 ~p~~f~~q~p~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vPv~f~W~~gg~~V~V~GSFnnW~~~ipL~rs~~~- 129 (280)
...+|.|+.+..++.++... ......|.+... .+........+||+|+|++|++.|||+|||+||+.+++|.++++.
T Consensus 37 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~ 115 (289)
T KOG1616|consen 37 SNSGFSPDDPDPPSTRDEKE-RIDEGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNV 115 (289)
T ss_pred cccccCCcCCCCCcCccccc-ccccccccccccccccccccccCCceEEEecCCCceEEEecccccccccccceecCCCc
Confidence 33378999999999876554 555677777543 455556678999999999999999999999999999999998866
Q ss_pred --EEEEEECCCceEEEEEEEcCeeeeCCCCCeeeCCCCCccceeecccCC--CCCCCCCcCC----------CCCCCC--
Q 023597 130 --FVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLDLQEYI--PEVPPSLSEF----------EQPPSP-- 193 (280)
Q Consensus 130 --f~~~l~Lp~G~y~YKFiVDG~W~~dp~~P~~~D~~G~~NNvi~V~~~~--pe~~~s~~~~----------~~p~sp-- 193 (280)
|++++.|++|+|+|||+|||+|++|+++|+++|..|++||+|+|.+.+ ++.++.+.++ +.+..+
T Consensus 116 ~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~~v~~~~~~l~~~~~~~~~~~s~e~~~~~~~ 195 (289)
T KOG1616|consen 116 GGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPDEVFEVFQALEEDLPSSNHSESSEVPNLPEE 195 (289)
T ss_pred ccceeeEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCccccchhhhhhhhhccccccccccccCCCccc
Confidence 999999999999999999999999999999999999999999999988 8877777665 444444
Q ss_pred -----CCCCCCCCCCCCcCCCC--CCCCCcccccccCCCCCCC-CCCCCCCCCCeEeecceEeeccCCCCcEEEeeceee
Q 023597 194 -----PSSYDNQPLSDSDFAKL--PPELPPQLQITSLNRPSSS-SSDQSLLRPQHTVLNHLFIQNTDGRQPMAIGSTHRF 265 (280)
Q Consensus 194 -----~~~Y~~~~p~~~~~~k~--PP~LPphL~~~iLN~~~~~-~~~~~Lp~P~HVvLNHLy~~sik~~~vlal~~T~Ry 265 (280)
.++|+|++|..+++.+. ||.|||||.++|||+++.. |++..|++|+||+|||||+++|| +++++|++||||
T Consensus 196 ~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~sik-~~~~~~~~~~r~ 274 (289)
T KOG1616|consen 196 LEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALSIK-DGVMVLSFTHRY 274 (289)
T ss_pred cccccccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhccC-CCeeEecceecc
Confidence 89999999998777665 9999999999999999876 99999999999999999999996 999999999999
Q ss_pred cceeeEEEEeeecCC
Q 023597 266 RQKYATVVLYKPSGR 280 (280)
Q Consensus 266 k~KyVTtvlYkP~~r 280 (280)
++||||++||||+++
T Consensus 275 ~~k~vt~~lyk~~~~ 289 (289)
T KOG1616|consen 275 KKKYVTTGLYKPLQL 289 (289)
T ss_pred cccceeEEeeeeccC
Confidence 999999999999975
No 2
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=100.00 E-value=2.9e-35 Score=236.69 Aligned_cols=86 Identities=50% Similarity=0.823 Sum_probs=65.3
Q ss_pred CCCCCCCCCCCCC------------CcCCCCCCCCCcccccccCCCCCCC-CCCCCCCCCCeEeecceEeeccCCCCcEE
Q 023597 192 SPPSSYDNQPLSD------------SDFAKLPPELPPQLQITSLNRPSSS-SSDQSLLRPQHTVLNHLFIQNTDGRQPMA 258 (280)
Q Consensus 192 sp~~~Y~~~~p~~------------~~~~k~PP~LPphL~~~iLN~~~~~-~~~~~Lp~P~HVvLNHLy~~sik~~~vla 258 (280)
+|+++|+++||+. ++|+++||.||+||+++|||++... |+++.||+|+||||||||+++|| ++|||
T Consensus 2 ~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~ik-~~v~a 80 (100)
T PF04739_consen 2 SPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSSIK-DGVLA 80 (100)
T ss_dssp -----EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEEEB-TTEEE
T ss_pred CCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEcccC-CCeEE
Confidence 5778999999964 4789999999999999999999655 88999999999999999999997 99999
Q ss_pred EeeceeecceeeEEEEeeec
Q 023597 259 IGSTHRFRQKYATVVLYKPS 278 (280)
Q Consensus 259 l~~T~Ryk~KyVTtvlYkP~ 278 (280)
||+|||||+||||||||||+
T Consensus 81 l~~T~Ryk~KyVT~vlYkP~ 100 (100)
T PF04739_consen 81 LGTTHRYKSKYVTTVLYKPI 100 (100)
T ss_dssp EEEEEEETTEEEEEEEEEE-
T ss_pred EEEEEEecceEEEEEEecCC
Confidence 99999999999999999996
No 3
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.94 E-value=1.7e-26 Score=177.40 Aligned_cols=79 Identities=49% Similarity=0.843 Sum_probs=75.5
Q ss_pred ceEEEEEecCCCceEEEEeccCCCccCccceeeCCeEEEEEECCCceEEEEEEEcCeeeeCCCCCeeeCCCCCccceee
Q 023597 94 QVAAAITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNVLD 172 (280)
Q Consensus 94 ~vPv~f~W~~gg~~V~V~GSFnnW~~~ipL~rs~~~f~~~l~Lp~G~y~YKFiVDG~W~~dp~~P~~~D~~G~~NNvi~ 172 (280)
.+||+|+|.+++++|+|+|||+||+..++|.|+++.|++++.||+|.|+|||+|||+|++|+++|++.|++|++||+|+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~~~~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~ 79 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSGKGFSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID 79 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECCCCcEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence 4799999999999999999999999889999987779999999999999999999999999999999999999999985
No 4
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.77 E-value=1.4e-18 Score=133.38 Aligned_cols=76 Identities=28% Similarity=0.458 Sum_probs=68.3
Q ss_pred eEEEEEecCC-CceEEEEeccCCCccCccceeeC-CeEEEEEECCCceEEEEEEEcCeee-eCCCCCe-eeCCCCCccce
Q 023597 95 VAAAITWSLG-GKQVAVTGSWDNWENVDPLWRLG-KDFVIMKMLPSGVYHYRFIVDECLR-YAPDVPW-ECDDSGNAYNV 170 (280)
Q Consensus 95 vPv~f~W~~g-g~~V~V~GSFnnW~~~ipL~rs~-~~f~~~l~Lp~G~y~YKFiVDG~W~-~dp~~P~-~~D~~G~~NNv 170 (280)
++++|+|..+ +++|+|+|+|++|+ .++|+|.+ +.|++++.|++|.|+|||+|||.|. .||..+. ..|..|+.||+
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v 80 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAV 80 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceE
Confidence 5899999875 59999999999999 48999976 8899999999999999999999999 9999886 56779999998
Q ss_pred e
Q 023597 171 L 171 (280)
Q Consensus 171 i 171 (280)
|
T Consensus 81 ~ 81 (82)
T cd02861 81 F 81 (82)
T ss_pred c
Confidence 7
No 5
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.14 E-value=2.9e-10 Score=88.22 Aligned_cols=73 Identities=21% Similarity=0.349 Sum_probs=60.0
Q ss_pred EEEE-ecCCCceEEEEeccCCCccCccceeeC-CeEEEEE-ECCCceEEEEEEEcCeeeeCCCCCeeeCCCCCccce
Q 023597 97 AAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMK-MLPSGVYHYRFIVDECLRYAPDVPWECDDSGNAYNV 170 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~~~ipL~rs~-~~f~~~l-~Lp~G~y~YKFiVDG~W~~dp~~P~~~D~~G~~NNv 170 (280)
++|+ |...+++|.|.|+|++|+. .+|.+.+ |.|++.+ .|.+|.|+|+|+|||.|+.||..+...=..+..-|.
T Consensus 8 v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~ 83 (85)
T cd02858 8 VTFRLFAPKANEVQVRGSWGGAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG 83 (85)
T ss_pred EEEEEECCCCCEEEEEeecCCCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence 5666 8889999999999998886 7999864 7899988 488899999999999999999998766444444333
No 6
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.79 E-value=3e-08 Score=73.36 Aligned_cols=70 Identities=19% Similarity=0.333 Sum_probs=57.6
Q ss_pred EEEEE-ecCCCceEEEEeccCCCccCccceeeC-CeEEEEEECCC-ceEEEEEEEcCeeeeCCCCCeeeCCCC
Q 023597 96 AAAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKMLPS-GVYHYRFIVDECLRYAPDVPWECDDSG 165 (280)
Q Consensus 96 Pv~f~-W~~gg~~V~V~GSFnnW~~~ipL~rs~-~~f~~~l~Lp~-G~y~YKFiVDG~W~~dp~~P~~~D~~G 165 (280)
.+.|+ |..+++.|.|.+.|++|..+++|.+.. +.|++.+.+.. |.|.|+|+|||.|..++.++...+...
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~ 77 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGS 77 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCc
Confidence 46777 455789999999999976778998864 78999999998 999999999999999988755544433
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.30 E-value=1e-06 Score=66.89 Aligned_cols=56 Identities=21% Similarity=0.423 Sum_probs=44.9
Q ss_pred EEEEE-ecCCCceEEEEeccCC-Ccc-Ccccee--eCCeEEEEEE--CCCceEEEEEEEcCee
Q 023597 96 AAAIT-WSLGGKQVAVTGSWDN-WEN-VDPLWR--LGKDFVIMKM--LPSGVYHYRFIVDECL 151 (280)
Q Consensus 96 Pv~f~-W~~gg~~V~V~GSFnn-W~~-~ipL~r--s~~~f~~~l~--Lp~G~y~YKFiVDG~W 151 (280)
-+.|+ |...+++|.|.+.|++ |.. .++|.+ .++.|++.+. |++|.+.|+|.|||..
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 45565 9999999999999999 875 469994 4689999998 8889888888888764
No 8
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.30 E-value=3.3e-06 Score=67.69 Aligned_cols=61 Identities=18% Similarity=0.340 Sum_probs=45.4
Q ss_pred EEEE-ecCCCceEEEEeccCCCcc-Cccceee-CCeEEEEEEC--------CCce-EEEEEEE-cCeee--eCCCC
Q 023597 97 AAIT-WSLGGKQVAVTGSWDNWEN-VDPLWRL-GKDFVIMKML--------PSGV-YHYRFIV-DECLR--YAPDV 157 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~~-~ipL~rs-~~~f~~~l~L--------p~G~-y~YKFiV-DG~W~--~dp~~ 157 (280)
++|+ |...+++|+|+|+||+|+. .++|.|. .|.|++.+.. +.|. |+|++.. ||+|. .||-.
T Consensus 7 ~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA 82 (99)
T cd02854 7 VTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWI 82 (99)
T ss_pred EEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcce
Confidence 4555 9999999999999999986 4689985 5789998764 4553 5666655 78873 55443
No 9
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.54 E-value=0.00036 Score=55.07 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=46.0
Q ss_pred EEE-EecCCCceEEEEeccCCCc-----cCcccee-eCCeEEEEEE-CCCceEEEEEEEcCe-----eeeCCCCCee
Q 023597 97 AAI-TWSLGGKQVAVTGSWDNWE-----NVDPLWR-LGKDFVIMKM-LPSGVYHYRFIVDEC-----LRYAPDVPWE 160 (280)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~-----~~ipL~r-s~~~f~~~l~-Lp~G~y~YKFiVDG~-----W~~dp~~P~~ 160 (280)
+.| .|...+++|.|.. |++|. .+++|.+ .++.|++.+. +.+|.+ |+|.|||. ...||-....
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~ 84 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKAL 84 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeE
Confidence 556 4999999999998 88886 4578988 4688998876 455654 88888876 5566554433
No 10
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.46 E-value=0.00038 Score=54.58 Aligned_cols=53 Identities=25% Similarity=0.502 Sum_probs=43.0
Q ss_pred eEEEEEec---CCCceEEEEeccC---CCcc--CccceeeC-----CeEEEEEECCCce-EEEEEEE
Q 023597 95 VAAAITWS---LGGKQVAVTGSWD---NWEN--VDPLWRLG-----KDFVIMKMLPSGV-YHYRFIV 147 (280)
Q Consensus 95 vPv~f~W~---~gg~~V~V~GSFn---nW~~--~ipL~rs~-----~~f~~~l~Lp~G~-y~YKFiV 147 (280)
+.|+|+-. ..|+.|+|+||.. +|+. .++|.... ..|++.+.||.|. ++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 56677663 3589999999996 8997 57898753 5799999999885 9999999
No 11
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.36 E-value=0.00092 Score=54.86 Aligned_cols=45 Identities=36% Similarity=0.584 Sum_probs=38.3
Q ss_pred CCceEEEEec---cCCCcc--Cccceee---CCeEEEEEECCCc-eEEEEEEEc
Q 023597 104 GGKQVAVTGS---WDNWEN--VDPLWRL---GKDFVIMKMLPSG-VYHYRFIVD 148 (280)
Q Consensus 104 gg~~V~V~GS---FnnW~~--~ipL~rs---~~~f~~~l~Lp~G-~y~YKFiVD 148 (280)
.|+.|+|+|+ +.+|+. ..+|.+. +..|++.+.||.+ .++|||++.
T Consensus 14 ~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 14 PGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred CCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 5889999999 889985 4588875 3579999999998 699999994
No 12
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.28 E-value=0.0027 Score=49.59 Aligned_cols=52 Identities=21% Similarity=0.574 Sum_probs=37.6
Q ss_pred EEEE-ecCCCceEEEEeccCCCcc-Cccceee--CCeEEEEEE-CCCce-EEEEEEEc
Q 023597 97 AAIT-WSLGGKQVAVTGSWDNWEN-VDPLWRL--GKDFVIMKM-LPSGV-YHYRFIVD 148 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~~-~ipL~rs--~~~f~~~l~-Lp~G~-y~YKFiVD 148 (280)
++|+ |..+++.|.|.++|++|.. ..+|.+. .+.|.+.+. ++.|. |+|++..+
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~ 80 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGELYKYEILGA 80 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCEEEEEEECC
Confidence 3444 9999999999999999964 4689874 578998775 55664 44444443
No 13
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.27 E-value=0.00091 Score=51.90 Aligned_cols=44 Identities=27% Similarity=0.419 Sum_probs=36.7
Q ss_pred CCceEEEEec---cCCCccC--ccceeeC-CeEEEEEECCCc-eEEEEEEE
Q 023597 104 GGKQVAVTGS---WDNWENV--DPLWRLG-KDFVIMKMLPSG-VYHYRFIV 147 (280)
Q Consensus 104 gg~~V~V~GS---FnnW~~~--ipL~rs~-~~f~~~l~Lp~G-~y~YKFiV 147 (280)
.|+.|+|+|+ +.+|+.. ++|...+ +.|++.+.||.| .++|||++
T Consensus 13 ~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 13 WGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence 5899999996 7899863 5888754 679999999987 59999996
No 14
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.23 E-value=0.0022 Score=50.41 Aligned_cols=53 Identities=25% Similarity=0.439 Sum_probs=43.0
Q ss_pred eEEEEEecC---CCceEEEEecc---CCCccCccceeeCCeEEEEEECCCc-eEEEEEEE
Q 023597 95 VAAAITWSL---GGKQVAVTGSW---DNWENVDPLWRLGKDFVIMKMLPSG-VYHYRFIV 147 (280)
Q Consensus 95 vPv~f~W~~---gg~~V~V~GSF---nnW~~~ipL~rs~~~f~~~l~Lp~G-~y~YKFiV 147 (280)
+.++|+-.. -|+.++|+|+- .+|+...+|.-..+.|++.+.|+.| ..+|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEE
Confidence 445555443 48899999987 5899888888777789999999987 59999998
No 15
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.20 E-value=0.00085 Score=70.92 Aligned_cols=60 Identities=18% Similarity=0.332 Sum_probs=44.5
Q ss_pred EEEEE-ecCCCceEEEEeccCCCccC-ccceee-CCeEEEEEE-------CCCceEEEEEEEc---Cee--eeCCC
Q 023597 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL-GKDFVIMKM-------LPSGVYHYRFIVD---ECL--RYAPD 156 (280)
Q Consensus 96 Pv~f~-W~~gg~~V~V~GSFnnW~~~-ipL~rs-~~~f~~~l~-------Lp~G~y~YKFiVD---G~W--~~dp~ 156 (280)
-|+|+ |...+++|+|+|+||+|+.. .+|+|. .|.|++.|. ++.|. .|||.|. |+| +.||-
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpy 189 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAW 189 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCch
Confidence 45666 99999999999999999864 599985 479998875 33444 6777774 543 45554
No 16
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.15 E-value=0.0016 Score=51.79 Aligned_cols=52 Identities=17% Similarity=0.141 Sum_probs=40.4
Q ss_pred EEE-EecCCCceEEEEeccCCCc--cCccceee-CCeEEEEE-ECCCceEEEEEEEcCe
Q 023597 97 AAI-TWSLGGKQVAVTGSWDNWE--NVDPLWRL-GKDFVIMK-MLPSGVYHYRFIVDEC 150 (280)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~--~~ipL~rs-~~~f~~~l-~Lp~G~y~YKFiVDG~ 150 (280)
+.| .|...+++|.|.. |++|. .+++|.+. ++.|.+.+ .+.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCc
Confidence 456 5999999999998 66664 35789876 57898887 466676 799999994
No 17
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.11 E-value=0.00082 Score=69.64 Aligned_cols=56 Identities=14% Similarity=0.449 Sum_probs=44.7
Q ss_pred eEEEEE-ecCCCceEEEEeccCCCccC-cccee--eCCeEEEEEE-CCCceEEEEEEEcCee
Q 023597 95 VAAAIT-WSLGGKQVAVTGSWDNWENV-DPLWR--LGKDFVIMKM-LPSGVYHYRFIVDECL 151 (280)
Q Consensus 95 vPv~f~-W~~gg~~V~V~GSFnnW~~~-ipL~r--s~~~f~~~l~-Lp~G~y~YKFiVDG~W 151 (280)
-.|.|+ |...++.|.|.|+||+|... .+|.. ..|.|++.+. +++| ++|||.+++..
T Consensus 36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~ 96 (628)
T COG0296 36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPS 96 (628)
T ss_pred CceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCC
Confidence 356665 99999999999999999983 23332 2378999999 9999 89999987653
No 18
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.03 E-value=0.0034 Score=49.80 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=41.3
Q ss_pred ceEEEEEecC----CCceEEEEe---ccCCCccCc-cceee----CCeEEEEEECCCce-EEEEEEE
Q 023597 94 QVAAAITWSL----GGKQVAVTG---SWDNWENVD-PLWRL----GKDFVIMKMLPSGV-YHYRFIV 147 (280)
Q Consensus 94 ~vPv~f~W~~----gg~~V~V~G---SFnnW~~~i-pL~rs----~~~f~~~l~Lp~G~-y~YKFiV 147 (280)
.|+|+|+-.. .|++|+|+| ++.+|+... +|... ...|++.+.||.|. ++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4788888642 489999999 567998642 34331 35799999999985 9999999
No 19
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=96.91 E-value=0.007 Score=48.51 Aligned_cols=54 Identities=26% Similarity=0.500 Sum_probs=43.0
Q ss_pred ceEEEEEecC-----CCceEEEEecc---CCCccCc-----cceee-CCeEEEEEECCCce-EEEEEEE
Q 023597 94 QVAAAITWSL-----GGKQVAVTGSW---DNWENVD-----PLWRL-GKDFVIMKMLPSGV-YHYRFIV 147 (280)
Q Consensus 94 ~vPv~f~W~~-----gg~~V~V~GSF---nnW~~~i-----pL~rs-~~~f~~~l~Lp~G~-y~YKFiV 147 (280)
.|||+|+-.. -|++|+|+|+- -+|+... +|... ...|++.+.||.|. .+|||++
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 3899999863 48899999986 4899732 66543 35799999999985 9999998
No 20
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.85 E-value=0.0037 Score=64.54 Aligned_cols=57 Identities=21% Similarity=0.433 Sum_probs=43.1
Q ss_pred EEEEE-ecCCCceEEEEeccCCCccC-ccceee-CCeEEEEEE-CCCc-eEEEEEEE-cCeee
Q 023597 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL-GKDFVIMKM-LPSG-VYHYRFIV-DECLR 152 (280)
Q Consensus 96 Pv~f~-W~~gg~~V~V~GSFnnW~~~-ipL~rs-~~~f~~~l~-Lp~G-~y~YKFiV-DG~W~ 152 (280)
-|+|+ |...+++|+|+|+|++|... .+|.|. ++.|.+.+. +.+| .|+|++.+ ||.|.
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~ 101 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQV 101 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEE
Confidence 45665 88999999999999999864 689885 578999887 4445 46666644 56653
No 21
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.74 E-value=0.0045 Score=50.27 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=41.5
Q ss_pred EEE-EecCCCceEEEEeccCCCc---c--Cccceee----CCeEEEEEE-CCCceEEEEEEEcCeee
Q 023597 97 AAI-TWSLGGKQVAVTGSWDNWE---N--VDPLWRL----GKDFVIMKM-LPSGVYHYRFIVDECLR 152 (280)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~---~--~ipL~rs----~~~f~~~l~-Lp~G~y~YKFiVDG~W~ 152 (280)
+.| .|...+++|.|.. |++|. . +++|.+. ++.|.+.+. +..|. .|+|.|||.|.
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~ 73 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFE 73 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCC
Confidence 555 4999999999999 88886 2 4577653 478988775 56786 79999999754
No 22
>PRK12568 glycogen branching enzyme; Provisional
Probab=96.74 E-value=0.0039 Score=65.76 Aligned_cols=61 Identities=20% Similarity=0.543 Sum_probs=46.1
Q ss_pred EEEEE-ecCCCceEEEEeccCCCcc-Ccccee-eCCeEEEEEE-CCCceEEEEEEE---cCeee--eCCCC
Q 023597 96 AAAIT-WSLGGKQVAVTGSWDNWEN-VDPLWR-LGKDFVIMKM-LPSGVYHYRFIV---DECLR--YAPDV 157 (280)
Q Consensus 96 Pv~f~-W~~gg~~V~V~GSFnnW~~-~ipL~r-s~~~f~~~l~-Lp~G~y~YKFiV---DG~W~--~dp~~ 157 (280)
=|.|+ |...+++|.|+|+||+|.. +.+|.+ .++.|++.+. +..|. .|||.| ||++. .||-.
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G~-~YKYeI~~~~G~~~~k~DPYA 208 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAGA-RYKYAITAADGRVLLKADPVA 208 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCCC-EEEEEEEcCCCeEeecCCCcc
Confidence 45675 9999999999999999986 468986 4578998874 67774 577777 78764 45443
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.72 E-value=0.0037 Score=69.17 Aligned_cols=53 Identities=15% Similarity=0.450 Sum_probs=42.6
Q ss_pred EEEEE-ecCCCceEEEEeccCCCccC-cccee--eCCeEEEEEE-CCCceEEEEEEEcC
Q 023597 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWR--LGKDFVIMKM-LPSGVYHYRFIVDE 149 (280)
Q Consensus 96 Pv~f~-W~~gg~~V~V~GSFnnW~~~-ipL~r--s~~~f~~~l~-Lp~G~y~YKFiVDG 149 (280)
-|.|+ |...++.|+|+|+||+|..+ .+|.+ ..+.|++.+. +.+|. .|||.|++
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~ 696 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILT 696 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEc
Confidence 45666 99999999999999999874 58987 3588998774 77886 68888843
No 24
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.54 E-value=0.0058 Score=63.57 Aligned_cols=53 Identities=25% Similarity=0.551 Sum_probs=41.9
Q ss_pred EEEEE-ecCCCceEEEEeccCCCccC-ccceee-CCeEEEEEE-CCCceEEEEEEEcC
Q 023597 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL-GKDFVIMKM-LPSGVYHYRFIVDE 149 (280)
Q Consensus 96 Pv~f~-W~~gg~~V~V~GSFnnW~~~-ipL~rs-~~~f~~~l~-Lp~G~y~YKFiVDG 149 (280)
-|.|+ |...+++|+|+|+||+|..+ .+|.|. .+.|.+.+. +..| ..|||.|++
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~ 95 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTG 95 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCC-CEEEEEEEC
Confidence 35665 99999999999999999874 599885 478998875 3455 468888865
No 25
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.45 E-value=0.0099 Score=46.53 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=37.1
Q ss_pred CCceEEEEecc---CCCccCccceeeC-CeEEEEEECCCce-EEEEEEE
Q 023597 104 GGKQVAVTGSW---DNWENVDPLWRLG-KDFVIMKMLPSGV-YHYRFIV 147 (280)
Q Consensus 104 gg~~V~V~GSF---nnW~~~ipL~rs~-~~f~~~l~Lp~G~-y~YKFiV 147 (280)
+++.|+|+|+- -+|+...+|.... ..|++.+.||.+. .+|||++
T Consensus 14 ~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 14 DAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred CCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 56889999986 5899888998653 5799999999986 9999998
No 26
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.44 E-value=0.011 Score=62.32 Aligned_cols=56 Identities=18% Similarity=0.522 Sum_probs=42.5
Q ss_pred EEEEE-ecCCCceEEEEeccCCCccC-ccceee--CCeEEEEEE-CCCc-eEEEEEEEc-Cee
Q 023597 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL--GKDFVIMKM-LPSG-VYHYRFIVD-ECL 151 (280)
Q Consensus 96 Pv~f~-W~~gg~~V~V~GSFnnW~~~-ipL~rs--~~~f~~~l~-Lp~G-~y~YKFiVD-G~W 151 (280)
-|+|+ |...+++|.|+|+||+|... .+|.+. ++.|.+.+. +++| .|+|++..+ |.|
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~ 194 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGEL 194 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcE
Confidence 35666 88899999999999999863 689986 478988774 5666 566666654 455
No 27
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.35 E-value=0.014 Score=46.44 Aligned_cols=56 Identities=25% Similarity=0.455 Sum_probs=42.9
Q ss_pred ccceEEEEEec---CCCceEEEEecc---CCCcc--Cccceee-----CCeEEEEEECCCce-EEEEEEE
Q 023597 92 EKQVAAAITWS---LGGKQVAVTGSW---DNWEN--VDPLWRL-----GKDFVIMKMLPSGV-YHYRFIV 147 (280)
Q Consensus 92 ~~~vPv~f~W~---~gg~~V~V~GSF---nnW~~--~ipL~rs-----~~~f~~~l~Lp~G~-y~YKFiV 147 (280)
+..+.+.|+=. .-|+.|+|+|+- -+|+. .++|... +..|++.+.||.|. .+|||+|
T Consensus 4 ~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 4 ATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 34567777653 358999999986 47996 3578653 36799999999886 9999996
No 28
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.31 E-value=0.04 Score=43.60 Aligned_cols=45 Identities=27% Similarity=0.445 Sum_probs=36.8
Q ss_pred CCCceEEEEecc---CCCcc--CccceeeC-CeEEEEEECCCc--eEEEEEEE
Q 023597 103 LGGKQVAVTGSW---DNWEN--VDPLWRLG-KDFVIMKMLPSG--VYHYRFIV 147 (280)
Q Consensus 103 ~gg~~V~V~GSF---nnW~~--~ipL~rs~-~~f~~~l~Lp~G--~y~YKFiV 147 (280)
..|+.|+|+|+- .+|+. .++|.... ..|++.+.||++ ..+|||++
T Consensus 12 ~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 12 PKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence 358999999995 58995 45888754 579999999976 58999998
No 29
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.20 E-value=0.035 Score=44.00 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=40.5
Q ss_pred ceEEEEEecC----CCceEEEEecc---CCCccCc--cce-e----eCCeEEEEEECCCce-EEEEEEE
Q 023597 94 QVAAAITWSL----GGKQVAVTGSW---DNWENVD--PLW-R----LGKDFVIMKMLPSGV-YHYRFIV 147 (280)
Q Consensus 94 ~vPv~f~W~~----gg~~V~V~GSF---nnW~~~i--pL~-r----s~~~f~~~l~Lp~G~-y~YKFiV 147 (280)
.++++|+-+. -|+.|+|+|+- -+|+... .|. . ....|++.+.||.|. .+|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 4677887642 48999999986 5899743 232 2 234799999999985 9999998
No 30
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.98 E-value=0.016 Score=61.04 Aligned_cols=53 Identities=19% Similarity=0.066 Sum_probs=40.5
Q ss_pred EEE-EecCCCceEEEEeccCCCccCccceee--CCeEEEEEECCCceEEEEEEE--cCee
Q 023597 97 AAI-TWSLGGKQVAVTGSWDNWENVDPLWRL--GKDFVIMKMLPSGVYHYRFIV--DECL 151 (280)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~~~ipL~rs--~~~f~~~l~Lp~G~y~YKFiV--DG~W 151 (280)
++| +|...+++|.|+|+||+ ....+|++. .|.|++.+.+..|.. |||.| ||++
T Consensus 30 ~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~-YKy~i~~~g~~ 87 (726)
T PRK05402 30 LVVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFD-YRLRVTWGGGE 87 (726)
T ss_pred EEEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCC-eEEEEEeCCce
Confidence 444 49999999999999997 445799984 478999888777742 55555 7865
No 31
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=95.97 E-value=0.028 Score=44.68 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=35.7
Q ss_pred CCceEEEEeccC---CCcc--CccceeeC-CeEEEEEECCCce-EEEEEEE
Q 023597 104 GGKQVAVTGSWD---NWEN--VDPLWRLG-KDFVIMKMLPSGV-YHYRFIV 147 (280)
Q Consensus 104 gg~~V~V~GSFn---nW~~--~ipL~rs~-~~f~~~l~Lp~G~-y~YKFiV 147 (280)
-|+.|+|+|+-. +|+. .++|.... ..|++.+.||.|. .+|||++
T Consensus 14 ~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 14 LGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 588999999874 8996 35776543 5699999999985 8999988
No 32
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=95.95 E-value=0.017 Score=45.92 Aligned_cols=46 Identities=17% Similarity=0.370 Sum_probs=37.3
Q ss_pred cCCCceEEEEec---cCCCccC--ccceeeC-CeEEEEEECCCc-eEEEEEEE
Q 023597 102 SLGGKQVAVTGS---WDNWENV--DPLWRLG-KDFVIMKMLPSG-VYHYRFIV 147 (280)
Q Consensus 102 ~~gg~~V~V~GS---FnnW~~~--ipL~rs~-~~f~~~l~Lp~G-~y~YKFiV 147 (280)
...|+.|+|+|+ .-+|+.. ++|...+ ..|++.+.||.| .++|||+|
T Consensus 10 t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 10 TQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred cCCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence 345899999999 4689963 5887654 579999999988 49999998
No 33
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=95.84 E-value=0.023 Score=43.79 Aligned_cols=46 Identities=28% Similarity=0.440 Sum_probs=37.7
Q ss_pred cCCCceEEEEeccC---CCcc--CccceeeC--CeEEEEEECCC--c-eEEEEEEE
Q 023597 102 SLGGKQVAVTGSWD---NWEN--VDPLWRLG--KDFVIMKMLPS--G-VYHYRFIV 147 (280)
Q Consensus 102 ~~gg~~V~V~GSFn---nW~~--~ipL~rs~--~~f~~~l~Lp~--G-~y~YKFiV 147 (280)
...|+.|+|+|+.. +|+. .++|...+ +.|++.+.|+. | .++|||++
T Consensus 10 t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 10 TQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 34689999999974 8985 46888654 67999999998 7 59999998
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.59 E-value=0.035 Score=57.36 Aligned_cols=61 Identities=16% Similarity=0.455 Sum_probs=44.9
Q ss_pred EEEEE-ecCCCceEEEEeccCCCccC-ccceee--CCeEEEEEE-CCCceEEEEEEEc---Cee--eeCCCC
Q 023597 96 AAAIT-WSLGGKQVAVTGSWDNWENV-DPLWRL--GKDFVIMKM-LPSGVYHYRFIVD---ECL--RYAPDV 157 (280)
Q Consensus 96 Pv~f~-W~~gg~~V~V~GSFnnW~~~-ipL~rs--~~~f~~~l~-Lp~G~y~YKFiVD---G~W--~~dp~~ 157 (280)
-|+|+ |...+++|.|+|+||+|... .+|.+. ++.|++.+. +.+|. .|||.|+ |.+ +.||-.
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA 99 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYA 99 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCE
Confidence 35565 99999999999999999764 589875 478998775 34565 5888884 553 455543
No 35
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.49 E-value=0.049 Score=55.55 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=45.7
Q ss_pred EEEE-ecCCCceEEEEeccCCCccCccceeeC-CeEEEEEE-CCCceEEEEEEEcC-eeeeCCCCCee
Q 023597 97 AAIT-WSLGGKQVAVTGSWDNWENVDPLWRLG-KDFVIMKM-LPSGVYHYRFIVDE-CLRYAPDVPWE 160 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~~~ipL~rs~-~~f~~~l~-Lp~G~y~YKFiVDG-~W~~dp~~P~~ 160 (280)
|+|+ |...+++|.|.+. ++ .++|.|.+ |.|++.+. +.+| +.|+|.||| ..+.||.....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~~-~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---GA-LHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeC---CC-EEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 3564 9999999999973 33 47999864 78999886 6778 789999999 56777766543
No 36
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=95.23 E-value=0.07 Score=40.84 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=41.1
Q ss_pred EEEE-ecCCCceEEEEeccCCCccCccceee-CCeEEEEEECCCceEEEEEEEcC-eeeeCCCCC
Q 023597 97 AAIT-WSLGGKQVAVTGSWDNWENVDPLWRL-GKDFVIMKMLPSGVYHYRFIVDE-CLRYAPDVP 158 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~~~ipL~rs-~~~f~~~l~Lp~G~y~YKFiVDG-~W~~dp~~P 158 (280)
+.|+ |...+++|.|.... |+ +++|.|. ++.|++.+..-+|. .|+|.|++ ..+.||...
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~ 70 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASR 70 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccc
Confidence 4555 99999999999743 54 4789875 57899888644666 57888774 456665544
No 37
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.16 E-value=0.12 Score=40.38 Aligned_cols=54 Identities=19% Similarity=0.447 Sum_probs=36.2
Q ss_pred EEEEEecC------CCceEEEEeccCCCccC--ccceee-----CCeEEEEEECCCceEEEEEEE-cC
Q 023597 96 AAAITWSL------GGKQVAVTGSWDNWENV--DPLWRL-----GKDFVIMKMLPSGVYHYRFIV-DE 149 (280)
Q Consensus 96 Pv~f~W~~------gg~~V~V~GSFnnW~~~--ipL~rs-----~~~f~~~l~Lp~G~y~YKFiV-DG 149 (280)
.|+|.|+. ++.+|++.+.|++|+.. +.|.+. ++.|.++|.+|..-|+..|+. ||
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg 70 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDG 70 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCC
Confidence 45666633 46799999999999985 467775 468999999999999999998 65
No 38
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=93.70 E-value=0.37 Score=39.81 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=39.3
Q ss_pred EEEEecCCCceEEEEecc---CCCccC--ccceee-------C-CeEEEEEECCCc----eEEEEEEE
Q 023597 97 AAITWSLGGKQVAVTGSW---DNWENV--DPLWRL-------G-KDFVIMKMLPSG----VYHYRFIV 147 (280)
Q Consensus 97 v~f~W~~gg~~V~V~GSF---nnW~~~--ipL~rs-------~-~~f~~~l~Lp~G----~y~YKFiV 147 (280)
++.+....|++|+|+|+- -+|+.. ++|... . ..|.+.+.|+.| ..+|||+.
T Consensus 7 ~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 7 VVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred EEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 344567789999999985 589964 466643 2 359999999986 69999997
No 39
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=93.44 E-value=0.66 Score=36.57 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=34.6
Q ss_pred CCceEEEEecc---CCCccC--ccceee----CCeEEEEEECCCce-EEEEEEE
Q 023597 104 GGKQVAVTGSW---DNWENV--DPLWRL----GKDFVIMKMLPSGV-YHYRFIV 147 (280)
Q Consensus 104 gg~~V~V~GSF---nnW~~~--ipL~rs----~~~f~~~l~Lp~G~-y~YKFiV 147 (280)
-|+.|+|+|+- -+|+.. ++|... +..|++.+.++.+. .+|||+|
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 12 WGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred CCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 58999999986 579763 577542 23699999999874 9999999
No 40
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=92.92 E-value=0.28 Score=50.58 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=42.5
Q ss_pred EEEE-ecCCCceEEEEeccCCCcc-----Cccceee-CCeEEEEEE-CCCceEEEEEEE--cCee--eeCCCCC
Q 023597 97 AAIT-WSLGGKQVAVTGSWDNWEN-----VDPLWRL-GKDFVIMKM-LPSGVYHYRFIV--DECL--RYAPDVP 158 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~~-----~ipL~rs-~~~f~~~l~-Lp~G~y~YKFiV--DG~W--~~dp~~P 158 (280)
|.|+ |...+++|.|.+ |++|.. .++|.+. ++.|++.+. +..|. .|+|.| +|.| +.||-.-
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~-~Y~y~v~~~~~~~~~~DPya~ 92 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGY-FYTYQVCINGKWRETVDPYAK 92 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCC-EEEEEEEcCCCeEEEcCCCcc
Confidence 6676 999999999998 888853 4688875 578998886 45564 355555 5654 6776543
No 41
>PLN02316 synthase/transferase
Probab=90.79 E-value=1.3 Score=48.83 Aligned_cols=86 Identities=14% Similarity=0.252 Sum_probs=57.7
Q ss_pred cccccceEEEEEecC------CCceEEEEeccCCCccCc----ccee----eCCeEEEEEECCCceEEEEEEE-cCeeee
Q 023597 89 LSYEKQVAAAITWSL------GGKQVAVTGSWDNWENVD----PLWR----LGKDFVIMKMLPSGVYHYRFIV-DECLRY 153 (280)
Q Consensus 89 ~~~~~~vPv~f~W~~------gg~~V~V~GSFnnW~~~i----pL~r----s~~~f~~~l~Lp~G~y~YKFiV-DG~W~~ 153 (280)
......-++++-|+. +..+|+|.|.||+|+... .|.+ +++.|.+.+.+|..-|..-|+. ||.
T Consensus 323 ~~~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~--- 399 (1036)
T PLN02316 323 SEFKAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP--- 399 (1036)
T ss_pred CCcCCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC---
Confidence 344556788899983 368999999999999632 2333 2346899999999999999986 664
Q ss_pred CCCCCeeeCCCCCccceeecccCCC
Q 023597 154 APDVPWECDDSGNAYNVLDLQEYIP 178 (280)
Q Consensus 154 dp~~P~~~D~~G~~NNvi~V~~~~p 178 (280)
+......|.+++..=-+-|...++
T Consensus 400 -~~~~~~yDNn~~~Dyh~~v~~~~~ 423 (1036)
T PLN02316 400 -PGNARNYDNNGRQDFHAIVPNNIP 423 (1036)
T ss_pred -cccccccccCCCcceeeecCCCCc
Confidence 222334555555444454544333
No 42
>PLN02950 4-alpha-glucanotransferase
Probab=90.41 E-value=1.7 Score=47.38 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=50.3
Q ss_pred ccccceEEEEEecC----CCceEEEEecc---CCCccC--ccceee-CCeEEEEEECCCce--EEEEEEE---cCe--ee
Q 023597 90 SYEKQVAAAITWSL----GGKQVAVTGSW---DNWENV--DPLWRL-GKDFVIMKMLPSGV--YHYRFIV---DEC--LR 152 (280)
Q Consensus 90 ~~~~~vPv~f~W~~----gg~~V~V~GSF---nnW~~~--ipL~rs-~~~f~~~l~Lp~G~--y~YKFiV---DG~--W~ 152 (280)
+....+.|+|+-.. .|+.|+|+|+- -+|+.. ++|... ...|.+.+.|+.+. .+|||++ +|. |.
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE 227 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLE 227 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEe
Confidence 34567888888533 58999999986 489964 466653 46799999999884 8999998 343 65
Q ss_pred eCCCCC
Q 023597 153 YAPDVP 158 (280)
Q Consensus 153 ~dp~~P 158 (280)
..++.-
T Consensus 228 ~g~NR~ 233 (909)
T PLN02950 228 LGVNRE 233 (909)
T ss_pred eCCCce
Confidence 555543
No 43
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=88.83 E-value=1.9 Score=33.32 Aligned_cols=62 Identities=27% Similarity=0.281 Sum_probs=43.2
Q ss_pred cccceEEEEEecCCC---ceEEEEecc-CCCccCccceee-CCeEEEEEECCCceEEEEEEE-c-CeeeeCC
Q 023597 91 YEKQVAAAITWSLGG---KQVAVTGSW-DNWENVDPLWRL-GKDFVIMKMLPSGVYHYRFIV-D-ECLRYAP 155 (280)
Q Consensus 91 ~~~~vPv~f~W~~gg---~~V~V~GSF-nnW~~~ipL~rs-~~~f~~~l~Lp~G~y~YKFiV-D-G~W~~dp 155 (280)
.+.-.-+.|.+.+|. ..|.|.++= .+|. +|.|+ +..|.+.-.++.|-+.||+.. | |++....
T Consensus 10 ~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~~ 78 (82)
T PF01357_consen 10 NPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVAD 78 (82)
T ss_dssp BTTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEEE
T ss_pred CCcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEEe
Confidence 356677888887764 468999554 5585 59998 568988778888999999998 7 8887653
No 44
>PLN02316 synthase/transferase
Probab=88.36 E-value=1.3 Score=48.90 Aligned_cols=63 Identities=13% Similarity=0.269 Sum_probs=47.5
Q ss_pred ceEEEEEecCC------CceEEEEeccCCCccC---ccceeeC---CeEEEEEECCCceEEEEEEE-cCeeeeCCC
Q 023597 94 QVAAAITWSLG------GKQVAVTGSWDNWENV---DPLWRLG---KDFVIMKMLPSGVYHYRFIV-DECLRYAPD 156 (280)
Q Consensus 94 ~vPv~f~W~~g------g~~V~V~GSFnnW~~~---ipL~rs~---~~f~~~l~Lp~G~y~YKFiV-DG~W~~dp~ 156 (280)
.-++.+.|+.. ..+|.|.|.||+|+-. ..|.|++ +.|++.+.+|+.-|..-|+. ||.-.+|.+
T Consensus 153 ~~~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN 228 (1036)
T PLN02316 153 DSDIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNN 228 (1036)
T ss_pred CCeeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccccC
Confidence 34566677642 4789999999999874 3777763 45899999999999999998 775544433
No 45
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=88.33 E-value=1.1 Score=47.45 Aligned_cols=53 Identities=15% Similarity=0.110 Sum_probs=39.5
Q ss_pred EEEE-ecCCCceEEEEeccCCCcc----Cccceee-CCeEEEEEE-CCCceEEEEEEEcCee
Q 023597 97 AAIT-WSLGGKQVAVTGSWDNWEN----VDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDECL 151 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~~----~ipL~rs-~~~f~~~l~-Lp~G~y~YKFiVDG~W 151 (280)
|.|+ |+..++.|.|. -|++|.. +++|.+. ++.|.+.+. +..|. .|+|.|+|.|
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 5565 89999999986 5665542 4678764 578999885 67777 4999999854
No 46
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=88.05 E-value=3.5 Score=32.36 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=36.4
Q ss_pred cceEEEEEec-CCCceEEEEeccCC--Cc-cCccceeeCC-----eEEEEEECCCceEEEEEEE
Q 023597 93 KQVAAAITWS-LGGKQVAVTGSWDN--WE-NVDPLWRLGK-----DFVIMKMLPSGVYHYRFIV 147 (280)
Q Consensus 93 ~~vPv~f~W~-~gg~~V~V~GSFnn--W~-~~ipL~rs~~-----~f~~~l~Lp~G~y~YKFiV 147 (280)
..+-++|+=. ...+.|.|.-.-+. |. ..++|.+.+. .|++.+.++.|.+.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 3344444432 34577888665442 22 2578988642 3899999988999999999
No 47
>PLN02950 4-alpha-glucanotransferase
Probab=87.23 E-value=3.3 Score=45.32 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=41.1
Q ss_pred ccceEEEEEecC---CCceEEEEecc---CCCccC--ccceee----CCeEEEEEECCCce-EEEEEEE
Q 023597 92 EKQVAAAITWSL---GGKQVAVTGSW---DNWENV--DPLWRL----GKDFVIMKMLPSGV-YHYRFIV 147 (280)
Q Consensus 92 ~~~vPv~f~W~~---gg~~V~V~GSF---nnW~~~--ipL~rs----~~~f~~~l~Lp~G~-y~YKFiV 147 (280)
...+.+.|.=.. -|++|+|+|+- -+|+.. ++|... +..|++.+.|+.|. .+|||++
T Consensus 6 ~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 6 LKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 345666666432 58999999997 479864 577543 23699999999885 9999995
No 48
>PLN02960 alpha-amylase
Probab=86.38 E-value=0.91 Score=49.30 Aligned_cols=54 Identities=19% Similarity=0.463 Sum_probs=39.3
Q ss_pred eEEEEEecCCCceEEEEeccCCCccCc-cce-----eeC-CeEEEEEE--CCCce-------EEEEEEEc
Q 023597 95 VAAAITWSLGGKQVAVTGSWDNWENVD-PLW-----RLG-KDFVIMKM--LPSGV-------YHYRFIVD 148 (280)
Q Consensus 95 vPv~f~W~~gg~~V~V~GSFnnW~~~i-pL~-----rs~-~~f~~~l~--Lp~G~-------y~YKFiVD 148 (280)
.-....|..|++.+.|+|+||||+.+. .|. |++ |.|.|+|+ |..|. -+|.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 334567999999999999999999864 554 333 67888774 77773 25777665
No 49
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=85.51 E-value=3.9 Score=45.70 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=42.9
Q ss_pred EEEE-ecCCCceEEEEec-cCCCcc---Cccceee-CCeEEEEEE-CCCc-----eEEEEEEEcC----eeeeCCCC
Q 023597 97 AAIT-WSLGGKQVAVTGS-WDNWEN---VDPLWRL-GKDFVIMKM-LPSG-----VYHYRFIVDE----CLRYAPDV 157 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GS-FnnW~~---~ipL~rs-~~~f~~~l~-Lp~G-----~y~YKFiVDG----~W~~dp~~ 157 (280)
+.|+ |...+++|.|..- +++|.. .++|.+. ++.|++.+. +.+| -+.|+|.|++ ....||-.
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA 405 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYA 405 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhh
Confidence 4565 9999999999984 556654 5789875 578999876 3333 2678888876 34566544
No 50
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=85.18 E-value=2.9 Score=34.77 Aligned_cols=82 Identities=26% Similarity=0.312 Sum_probs=52.0
Q ss_pred eEEEEEec----CCCceEEEEeccCCCccC-----ccceeeCC--eEEEEEECCCc-eEEEEEEEcCe------------
Q 023597 95 VAAAITWS----LGGKQVAVTGSWDNWENV-----DPLWRLGK--DFVIMKMLPSG-VYHYRFIVDEC------------ 150 (280)
Q Consensus 95 vPv~f~W~----~gg~~V~V~GSFnnW~~~-----ipL~rs~~--~f~~~l~Lp~G-~y~YKFiVDG~------------ 150 (280)
+-|+|.|+ +....|.|-|+.|++... ..|+|-++ .|+.++.||.+ +=.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~ 81 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRA 81 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHH
Confidence 35899999 456789999999999653 47888654 69999999987 46799997533
Q ss_pred ----eeeCCCCCeee-CC---CCCccceeecccC
Q 023597 151 ----LRYAPDVPWEC-DD---SGNAYNVLDLQEY 176 (280)
Q Consensus 151 ----W~~dp~~P~~~-D~---~G~~NNvi~V~~~ 176 (280)
-+.||-+|... .. .|...+++++.+.
T Consensus 82 ~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A 115 (122)
T PF11806_consen 82 ILAQAQADPLNPRPWPNGAQDRGNAASVLELPDA 115 (122)
T ss_dssp HGGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred HHhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence 25567777653 22 4788888877553
No 51
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=82.91 E-value=6.9 Score=38.72 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=58.1
Q ss_pred cccceEEEEEecCC-C-------ceEEEEe--ccC--CCccCccceeeC--CeEEEEEECCCc-eEEEEEEEc---C---
Q 023597 91 YEKQVAAAITWSLG-G-------KQVAVTG--SWD--NWENVDPLWRLG--KDFVIMKMLPSG-VYHYRFIVD---E--- 149 (280)
Q Consensus 91 ~~~~vPv~f~W~~g-g-------~~V~V~G--SFn--nW~~~ipL~rs~--~~f~~~l~Lp~G-~y~YKFiVD---G--- 149 (280)
.+..+-|+|-|++. | +.|||.+ ..| .+.....|+|-+ +.|+..+.||.. +-.|+|+++ .
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~ 114 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFS 114 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEecccccccc
Confidence 35678999999973 3 2588743 223 244445799965 469999999987 477999983 1
Q ss_pred ---------e------e-------eeCCCCCeee-CCCCCccceeecccCCC
Q 023597 150 ---------C------L-------RYAPDVPWEC-DDSGNAYNVLDLQEYIP 178 (280)
Q Consensus 150 ---------~------W-------~~dp~~P~~~-D~~G~~NNvi~V~~~~p 178 (280)
. | +.||.+|... +..|+-.++|++.+..+
T Consensus 115 ~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~~ 166 (411)
T PRK10439 115 AFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAPL 166 (411)
T ss_pred ccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCCC
Confidence 0 1 3567776553 44555568888876543
No 52
>PRK03705 glycogen debranching enzyme; Provisional
Probab=80.02 E-value=4.6 Score=42.59 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=39.7
Q ss_pred EEEE-ecCCCceEEEEeccCCCc--cCccceee-CCeEEEEEE-CCCceEEEEEEEcCee
Q 023597 97 AAIT-WSLGGKQVAVTGSWDNWE--NVDPLWRL-GKDFVIMKM-LPSGVYHYRFIVDECL 151 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~--~~ipL~rs-~~~f~~~l~-Lp~G~y~YKFiVDG~W 151 (280)
|.|+ |...++.|.|.. |+++. ..++|.+. ++.|.+.+. +..|. .|+|.|+|.|
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 5665 899999999997 77652 35688764 578988775 55665 5999999854
No 53
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=79.99 E-value=4.8 Score=43.98 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=36.7
Q ss_pred EEEE-ecCCCceEEEEeccCCCc--cCccceee--CCeEEEEEE-CCCceEEEEEEEc
Q 023597 97 AAIT-WSLGGKQVAVTGSWDNWE--NVDPLWRL--GKDFVIMKM-LPSGVYHYRFIVD 148 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~--~~ipL~rs--~~~f~~~l~-Lp~G~y~YKFiVD 148 (280)
|.|+ |...+++|.|....++|. ..++|.+. .+.|++.+. ...|. .|+|.|+
T Consensus 137 v~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~ 193 (898)
T TIGR02103 137 VTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVT 193 (898)
T ss_pred EEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEE
Confidence 4554 999999999997666653 24689885 589998875 34555 3777775
No 54
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=73.99 E-value=6.7 Score=44.24 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=40.4
Q ss_pred EEEE-ecCCCceEEEEeccCCCcc----Cccce-eeCCeEEEEEE-CCCceEEEEEEEcCee
Q 023597 97 AAIT-WSLGGKQVAVTGSWDNWEN----VDPLW-RLGKDFVIMKM-LPSGVYHYRFIVDECL 151 (280)
Q Consensus 97 v~f~-W~~gg~~V~V~GSFnnW~~----~ipL~-rs~~~f~~~l~-Lp~G~y~YKFiVDG~W 151 (280)
|.|+ |...++.|.|+ -|+.|.. +++|. +.++.|.+.+. +.+|. .|+|.|+|.|
T Consensus 25 v~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 25 VNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred EEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 6665 88889999997 8888864 35664 45678887664 77887 6999999865
No 55
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=73.04 E-value=9.8 Score=32.27 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=35.2
Q ss_pred ceEEEEEecCC-CceEEEEeccCCCccCccce-eeCCeEEEEEECCCceEEEE
Q 023597 94 QVAAAITWSLG-GKQVAVTGSWDNWENVDPLW-RLGKDFVIMKMLPSGVYHYR 144 (280)
Q Consensus 94 ~vPv~f~W~~g-g~~V~V~GSFnnW~~~ipL~-rs~~~f~~~l~Lp~G~y~YK 144 (280)
.-.|+|+|... +.+|...++.+-|-.. .+. +-+..|+.+++- +|.|.|+
T Consensus 61 GDTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 61 GDTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAGINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CCEEEEEECCCCCceEEEeCCCCccccc-ccccCCCcceEEEecc-cceEEEE
Confidence 45788999987 9999999998555442 222 223567777666 7999987
No 56
>PLN03244 alpha-amylase; Provisional
Probab=68.80 E-value=6.9 Score=42.47 Aligned_cols=49 Identities=18% Similarity=0.404 Sum_probs=36.6
Q ss_pred ccceEEEEEecCCCceEEEEeccCCCccCcccee------eC-CeEEEEEE--CCCce
Q 023597 92 EKQVAAAITWSLGGKQVAVTGSWDNWENVDPLWR------LG-KDFVIMKM--LPSGV 140 (280)
Q Consensus 92 ~~~vPv~f~W~~gg~~V~V~GSFnnW~~~ipL~r------s~-~~f~~~l~--Lp~G~ 140 (280)
+...-+...|..|+.--.|+|+||||+.+.-..| ++ |.|.|+|+ |..|.
T Consensus 129 ~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~ 186 (872)
T PLN03244 129 MEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREGE 186 (872)
T ss_pred cccCceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcCC
Confidence 3345566789999999999999999999754444 33 67888774 77773
No 57
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=64.85 E-value=25 Score=28.38 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=41.4
Q ss_pred ccceEEEEEec-CCCceEEEE-eccCCC----c-cCccceeeC-----CeEEEEEECCCceEEEEEEE--cCe-eeeCCC
Q 023597 92 EKQVAAAITWS-LGGKQVAVT-GSWDNW----E-NVDPLWRLG-----KDFVIMKMLPSGVYHYRFIV--DEC-LRYAPD 156 (280)
Q Consensus 92 ~~~vPv~f~W~-~gg~~V~V~-GSFnnW----~-~~ipL~rs~-----~~f~~~l~Lp~G~y~YKFiV--DG~-W~~dp~ 156 (280)
...+-++|+=. +..++|.|. |+-.+| . ...+|++.. ..|.+.+.++..+..|.|.| +|+ |.++..
T Consensus 20 ~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~~ 99 (120)
T PF02903_consen 20 GDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGER 99 (120)
T ss_dssp TTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEETT
T ss_pred CCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeCC
Confidence 45566666654 356788885 666666 2 235888743 25799999999998999987 333 555543
No 58
>PLN02877 alpha-amylase/limit dextrinase
Probab=63.21 E-value=17 Score=40.14 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=35.4
Q ss_pred EEEEE-ecCCCceEEEEeccCCCcc-----CccceeeCCeEEEEEEC-CCceEEEEEEEc
Q 023597 96 AAAIT-WSLGGKQVAVTGSWDNWEN-----VDPLWRLGKDFVIMKML-PSGVYHYRFIVD 148 (280)
Q Consensus 96 Pv~f~-W~~gg~~V~V~GSFnnW~~-----~ipL~rs~~~f~~~l~L-p~G~y~YKFiVD 148 (280)
-|.|+ |...+++|.|.- |++|.. .++|.+.++.|++.+.- ..|. .|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G~-~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEGC-YYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCCC-eeEEEEe
Confidence 35554 999999999985 666532 24677667899988763 3453 4777776
No 59
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.41 E-value=9.2 Score=40.15 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=22.7
Q ss_pred CCCceEEEEEEEcCeee---eCCCCCeeeCC
Q 023597 136 LPSGVYHYRFIVDECLR---YAPDVPWECDD 163 (280)
Q Consensus 136 Lp~G~y~YKFiVDG~W~---~dp~~P~~~D~ 163 (280)
-..|.|+|||.++|+|+ .|+-+|+..+.
T Consensus 114 ~yaGif~f~~w~~G~W~~VvIDD~LP~~~~~ 144 (612)
T KOG0045|consen 114 NYAGIFHFRFWQNGEWVEVVIDDRLPTSNGG 144 (612)
T ss_pred ccceEEEEEEEeCCeEEEEEeeeecceEcCC
Confidence 35799999999999996 56778987554
No 60
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=53.10 E-value=30 Score=26.17 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=28.7
Q ss_pred eEEEEEecCC-CceEE-EEeccCCCccCccceeeCCeEEEEEECCCceEEEE
Q 023597 95 VAAAITWSLG-GKQVA-VTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYR 144 (280)
Q Consensus 95 vPv~f~W~~g-g~~V~-V~GSFnnW~~~ipL~rs~~~f~~~l~Lp~G~y~YK 144 (280)
-.++|++..+ +.+|. ..|.+.++...-.+...+..|+.++. .+|.|.|.
T Consensus 19 dtVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 19 DTVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred CEEEEEECCCCCccEEecCCCCccccccccccCCCCEEEEECC-CCEEEEEE
Confidence 3566677654 56664 45565444332344455667777664 47988775
No 61
>PRK10785 maltodextrin glucosidase; Provisional
Probab=48.34 E-value=80 Score=32.82 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=40.5
Q ss_pred ccceEEEEEecC-C-CceEEEEeccCCCccCccceeeC-----CeEEEEEECC--CceEEEEEEE--cCe
Q 023597 92 EKQVAAAITWSL-G-GKQVAVTGSWDNWENVDPLWRLG-----KDFVIMKMLP--SGVYHYRFIV--DEC 150 (280)
Q Consensus 92 ~~~vPv~f~W~~-g-g~~V~V~GSFnnW~~~ipL~rs~-----~~f~~~l~Lp--~G~y~YKFiV--DG~ 150 (280)
...+.++|+=.. . -+.|.|.-.+++-...++|++.+ ..|++.+.++ .+++.|.|.+ +|+
T Consensus 18 ~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 18 KDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 445666665432 2 46888877677755667898854 2388888885 7889999988 554
No 62
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=48.13 E-value=14 Score=39.67 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=27.6
Q ss_pred EEE-EecCCCceEEEEeccCCCccCccce---ee-CCeEEEEEE
Q 023597 97 AAI-TWSLGGKQVAVTGSWDNWENVDPLW---RL-GKDFVIMKM 135 (280)
Q Consensus 97 v~f-~W~~gg~~V~V~GSFnnW~~~ipL~---rs-~~~f~~~l~ 135 (280)
+.+ .|..+++.|.++|+||||... .+. |. -+.|++.+.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~-~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPS-SNELKPKDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCc-ccccCcccccceeEEecC
Confidence 444 599999999999999999984 333 32 256776554
No 63
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=47.05 E-value=26 Score=32.07 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=12.7
Q ss_pred EEEcCe--eeeCCCCCeee
Q 023597 145 FIVDEC--LRYAPDVPWEC 161 (280)
Q Consensus 145 FiVDG~--W~~dp~~P~~~ 161 (280)
-|-||+ |.||+++-.++
T Consensus 67 iVsDGk~lW~YDpdleQVT 85 (210)
T TIGR03009 67 WICNGTAVYAYNGLAKTVT 85 (210)
T ss_pred EEECCCEEEEECCChhhEE
Confidence 344996 99999987654
No 64
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=46.92 E-value=79 Score=25.55 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=37.7
Q ss_pred ccceEEEEEecCC--CceEEEEeccCCCccCccce----e-----eC----CeEEEEEECCCc--------eEEEEEEEc
Q 023597 92 EKQVAAAITWSLG--GKQVAVTGSWDNWENVDPLW----R-----LG----KDFVIMKMLPSG--------VYHYRFIVD 148 (280)
Q Consensus 92 ~~~vPv~f~W~~g--g~~V~V~GSFnnW~~~ipL~----r-----s~----~~f~~~l~Lp~G--------~y~YKFiVD 148 (280)
...+..++.-..- .|+|.|.=+||+|+....+. . +. ..|...+.|+.. .+--+|.|.
T Consensus 18 ~~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~ 97 (113)
T PF03370_consen 18 QQSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVN 97 (113)
T ss_dssp SSEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEET
T ss_pred CCEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeC
Confidence 3445555555443 47899999999999854332 1 11 358888888754 356788888
Q ss_pred Ce
Q 023597 149 EC 150 (280)
Q Consensus 149 G~ 150 (280)
|+
T Consensus 98 g~ 99 (113)
T PF03370_consen 98 GQ 99 (113)
T ss_dssp TE
T ss_pred CC
Confidence 86
No 65
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=46.37 E-value=60 Score=26.81 Aligned_cols=47 Identities=13% Similarity=0.315 Sum_probs=27.2
Q ss_pred ccceEEEEEecCCCceEEEE-ecc----CCCccCccceeeCCeEEEEEECCCceEEEE
Q 023597 92 EKQVAAAITWSLGGKQVAVT-GSW----DNWENVDPLWRLGKDFVIMKMLPSGVYHYR 144 (280)
Q Consensus 92 ~~~vPv~f~W~~gg~~V~V~-GSF----nnW~~~ipL~rs~~~f~~~l~Lp~G~y~YK 144 (280)
+..-.|+|+|..++.+|... +.. +.|.. ..+..|+.++. .+|+|.|.
T Consensus 20 ~~GdTV~f~n~d~~Hnv~~~~~~~p~g~~~~~s-----~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 20 APGDTVTFVPTDKGHNVETIKGMIPEGAEAFKS-----KINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CCCCEEEEEECCCCeeEEEccCCCcCCcccccC-----CCCCEEEEEeC-CCEEEEEE
Confidence 34557888898877776642 211 11221 22456666666 46888776
No 66
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=44.57 E-value=54 Score=29.38 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=22.9
Q ss_pred CCccCccceeeCC-eEEEEEECC-CceEEEEEE--Ec--CeeeeC
Q 023597 116 NWENVDPLWRLGK-DFVIMKMLP-SGVYHYRFI--VD--ECLRYA 154 (280)
Q Consensus 116 nW~~~ipL~rs~~-~f~~~l~Lp-~G~y~YKFi--VD--G~W~~d 154 (280)
.|+. .||+..++ .|.+.+.+. .|.|+|+.. +| +.|+++
T Consensus 56 ~w~~-vpM~~~gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 56 EWQE-VPMTPLGNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp B-----B-EESTS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred ccee-eccccCCCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 4988 89999875 588888875 799999976 56 456655
No 67
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=43.39 E-value=64 Score=26.64 Aligned_cols=49 Identities=18% Similarity=0.399 Sum_probs=27.7
Q ss_pred ceEEEEEecC--CCceEEEEeccCCCccCccceeeCCeEEEEEECCCceEEEE
Q 023597 94 QVAAAITWSL--GGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYR 144 (280)
Q Consensus 94 ~vPv~f~W~~--gg~~V~V~GSFnnW~~~ipL~rs~~~f~~~l~Lp~G~y~YK 144 (280)
.-.|+|+|+. .+.+|...+. ..|.....+...+..|+.++. .+|+|.|.
T Consensus 49 GdTVtw~~~~d~~~HnV~s~~~-~~f~s~~~~~~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 49 GTTVVWEWTGEGGGHNVVSDGD-GDLDESERVSEEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred CCEEEEEECCCCCCEEEEECCC-CCccccccccCCCCEEEEEec-CCcEEEEE
Confidence 4467778865 3566654311 234432222334567888775 57998886
No 68
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=42.99 E-value=27 Score=27.65 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=17.2
Q ss_pred EEEEEECCCceEEEEEEEcCe
Q 023597 130 FVIMKMLPSGVYHYRFIVDEC 150 (280)
Q Consensus 130 f~~~l~Lp~G~y~YKFiVDG~ 150 (280)
.+..|.|+.|+|..+|...+.
T Consensus 91 ~~~~v~l~~G~h~i~l~~~~~ 111 (125)
T PF03422_consen 91 VSVSVKLPAGKHTIYLVFNGG 111 (125)
T ss_dssp EEEEEEEESEEEEEEEEESSS
T ss_pred EEEEEeeCCCeeEEEEEEECC
Confidence 456789999999999988764
No 69
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=38.28 E-value=38 Score=27.16 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=14.6
Q ss_pred EEEEEECCCceEEEEEEEcCe
Q 023597 130 FVIMKMLPSGVYHYRFIVDEC 150 (280)
Q Consensus 130 f~~~l~Lp~G~y~YKFiVDG~ 150 (280)
.++.+.|+.|.|..+|+..|.
T Consensus 99 ~~~~v~~~~G~~~l~~~~~~~ 119 (129)
T smart00606 99 VSATVTLPAGVHDVYLVFKGG 119 (129)
T ss_pred EEEEEccCCceEEEEEEEECC
Confidence 345567888999887775543
No 70
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=38.23 E-value=56 Score=25.52 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=23.4
Q ss_pred ccceEEEEEecCCC---ceEEEEeccCCCccCccceeeCCeEEEEE-ECCCceEEEE
Q 023597 92 EKQVAAAITWSLGG---KQVAVTGSWDNWENVDPLWRLGKDFVIMK-MLPSGVYHYR 144 (280)
Q Consensus 92 ~~~vPv~f~W~~gg---~~V~V~GSFnnW~~~ipL~rs~~~f~~~l-~Lp~G~y~YK 144 (280)
..+.+++|+|...+ .++.+.+ -++.. .| ..++..++.+ .+.+|+|+|-
T Consensus 40 ~~G~~v~l~~~N~~~~~h~~~i~~--~~~~~--~l-~~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 40 KAGQPVTLTFTNNDSRPHEFVIPD--LGISK--VL-PPGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp ETTCEEEEEEEE-SSS-EEEEEGG--GTEEE--EE--TT-EEEEEEEE-S-EEEEEB
T ss_pred cCCCeEEEEEEECCCCcEEEEECC--CceEE--EE-CCCCEEEEEEcCCCCEEEEEE
Confidence 45678888886532 3343333 11211 12 2344566554 7899998763
No 71
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=32.89 E-value=49 Score=31.47 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=21.4
Q ss_pred ECCCceEEEEEEEcCeee---eCCCCCee
Q 023597 135 MLPSGVYHYRFIVDECLR---YAPDVPWE 160 (280)
Q Consensus 135 ~Lp~G~y~YKFiVDG~W~---~dp~~P~~ 160 (280)
+-+.|.|.+||.++|+|+ .|+..|+.
T Consensus 97 ~~~~G~y~vrl~~~G~w~~V~VDd~lP~~ 125 (318)
T smart00230 97 ENYAGIFHFRFWRFGKWVDVVIDDRLPTY 125 (318)
T ss_pred cccCCEEEEEEEECCEEEEEEecCCCeee
Confidence 356799999999999996 56777874
No 72
>PLN00115 pollen allergen group 3; Provisional
Probab=30.47 E-value=1.8e+02 Score=24.26 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=35.9
Q ss_pred cCCCceEEEEecc-CCCccCccceee-CCeEEEEEE-CCCceEEEEEEEc-CeeeeCC
Q 023597 102 SLGGKQVAVTGSW-DNWENVDPLWRL-GKDFVIMKM-LPSGVYHYRFIVD-ECLRYAP 155 (280)
Q Consensus 102 ~~gg~~V~V~GSF-nnW~~~ipL~rs-~~~f~~~l~-Lp~G~y~YKFiVD-G~W~~dp 155 (280)
+.+=..|.|.++= .+|.. +|+|+ |..|.+.-. .+.|-+.+||.++ |.+....
T Consensus 44 ~~dI~~V~Ik~~g~~~W~~--~M~rswGavW~~~s~~pl~GPlS~R~t~~~G~~~va~ 99 (118)
T PLN00115 44 NVAISEVEIKEKGAKDWVD--DLKESSTNTWTLKSKAPLKGPFSVRFLVKGGGYRVVD 99 (118)
T ss_pred eCCEEEEEEeecCCCcccC--ccccCccceeEecCCCCCCCceEEEEEEeCCCEEEEC
Confidence 4344678888873 46852 69998 668987543 3458899999885 7765543
No 73
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=29.62 E-value=1.6e+02 Score=21.19 Aligned_cols=42 Identities=26% Similarity=0.328 Sum_probs=28.4
Q ss_pred EEEecCCCceEEEEeccCCCccCccceeeCCeEEEEEECCCceEEEEEEEcCe
Q 023597 98 AITWSLGGKQVAVTGSWDNWENVDPLWRLGKDFVIMKMLPSGVYHYRFIVDEC 150 (280)
Q Consensus 98 ~f~W~~gg~~V~V~GSFnnW~~~ipL~rs~~~f~~~l~Lp~G~y~YKFiVDG~ 150 (280)
.|+=...|-+|||-|.+-+ ..|+ ....|++|.|.+++.-+|-
T Consensus 5 ~V~s~p~gA~V~vdg~~~G---~tp~--------~~~~l~~G~~~v~v~~~Gy 46 (71)
T PF08308_consen 5 RVTSNPSGAEVYVDGKYIG---TTPL--------TLKDLPPGEHTVTVEKPGY 46 (71)
T ss_pred EEEEECCCCEEEECCEEec---cCcc--------eeeecCCccEEEEEEECCC
Confidence 3444556788999887766 2232 1223888888888888884
No 74
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=28.77 E-value=35 Score=27.71 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=15.8
Q ss_pred CCCceEEEEEEEcCeeeeCCC
Q 023597 136 LPSGVYHYRFIVDECLRYAPD 156 (280)
Q Consensus 136 Lp~G~y~YKFiVDG~W~~dp~ 156 (280)
=|.|-|||.|. ||+|++..+
T Consensus 64 Sp~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 64 SKVGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred cCCCCccceec-CCEEEECCC
Confidence 34588999995 999998754
No 75
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=28.68 E-value=1.1e+02 Score=30.50 Aligned_cols=25 Identities=12% Similarity=-0.037 Sum_probs=20.1
Q ss_pred eCCeEEEEE--ECCCceEEEEEEEcCe
Q 023597 126 LGKDFVIMK--MLPSGVYHYRFIVDEC 150 (280)
Q Consensus 126 s~~~f~~~l--~Lp~G~y~YKFiVDG~ 150 (280)
.+|.|+..+ ..++|.|+.++.+||.
T Consensus 169 ~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 169 GDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CCceEEEEeeccCCCceEEEEEEEcCc
Confidence 357897665 4579999999999986
No 76
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.13 E-value=42 Score=34.98 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=29.6
Q ss_pred CeEEEEEECCCce-EEEEEEEcCe----eeeCCCCCeeeC-CCCC
Q 023597 128 KDFVIMKMLPSGV-YHYRFIVDEC----LRYAPDVPWECD-DSGN 166 (280)
Q Consensus 128 ~~f~~~l~Lp~G~-y~YKFiVDG~----W~~dp~~P~~~D-~~G~ 166 (280)
|.|.+.+.++||. |.|+|.||++ |.++.....-.+ -.|-
T Consensus 98 G~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~ 142 (563)
T KOG1263|consen 98 GVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGA 142 (563)
T ss_pred CCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeE
Confidence 4788889999995 9999999954 778777665555 3553
No 77
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=27.83 E-value=43 Score=26.97 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=14.9
Q ss_pred CceEEEEEEEcCeeeeCCC
Q 023597 138 SGVYHYRFIVDECLRYAPD 156 (280)
Q Consensus 138 ~G~y~YKFiVDG~W~~dp~ 156 (280)
.|-|||.| +||+|++..+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 68899999 5999998754
No 78
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=27.79 E-value=65 Score=30.34 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=21.1
Q ss_pred ECCCceEEEEEEEcCeee---eCCCCCee
Q 023597 135 MLPSGVYHYRFIVDECLR---YAPDVPWE 160 (280)
Q Consensus 135 ~Lp~G~y~YKFiVDG~W~---~dp~~P~~ 160 (280)
..+.|.|..||.++|+|+ .|+..|+.
T Consensus 105 ~~~~G~y~v~l~~~G~w~~V~VDD~lP~~ 133 (315)
T cd00044 105 ENYAGIYHFRFWKNGEWVEVVIDDRLPTS 133 (315)
T ss_pred cCcCcEEEEEEEECCEEEEEEecCCCeec
Confidence 357899999999999997 46667764
No 79
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=26.49 E-value=1.3e+02 Score=23.68 Aligned_cols=33 Identities=15% Similarity=-0.001 Sum_probs=23.8
Q ss_pred eCCeEEEEEECCCceEEEEEEEcCeeeeCCCCCe
Q 023597 126 LGKDFVIMKMLPSGVYHYRFIVDECLRYAPDVPW 159 (280)
Q Consensus 126 s~~~f~~~l~Lp~G~y~YKFiVDG~W~~dp~~P~ 159 (280)
..+.=++.|+|+||+|...-+. |.+.+-+..|.
T Consensus 49 ~~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 49 GKGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 3455678899999999999877 55555555543
No 80
>PLN03023 Expansin-like B1; Provisional
Probab=25.26 E-value=1.8e+02 Score=27.31 Aligned_cols=56 Identities=20% Similarity=0.330 Sum_probs=37.8
Q ss_pred eEEEEEecCC-C--ceEEEEec-cCCCccCccceee-CCeEEEEEECCCceEEEEEEEc---C-eeeeC
Q 023597 95 VAAAITWSLG-G--KQVAVTGS-WDNWENVDPLWRL-GKDFVIMKMLPSGVYHYRFIVD---E-CLRYA 154 (280)
Q Consensus 95 vPv~f~W~~g-g--~~V~V~GS-FnnW~~~ipL~rs-~~~f~~~l~Lp~G~y~YKFiVD---G-~W~~d 154 (280)
.-+.+.+.+| | ..|.|.|+ =.+|. +|.|+ +..|.+... +.|.+.+||.|. | .|...
T Consensus 162 l~vlv~~vgG~GdI~~V~Ik~~~~~~W~---~M~rnwGa~W~~~~~-l~Gp~slrf~v~~~~g~~~vva 226 (247)
T PLN03023 162 LAIVMLYQAGQNDILAVEIWQEDCKEWR---GMRKAYGAVWDMPNP-PKGPITLRFQVSGSAGQTWVQA 226 (247)
T ss_pred EEEEEEEcCCCccEEEEEEEecCCCCce---ECccCCcceeEcCCC-CCCceeEEEEEEeCCCcEEEEE
Confidence 4555566553 2 46888885 35785 69998 567987644 469999999885 3 46544
No 81
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=23.55 E-value=85 Score=25.56 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=18.8
Q ss_pred CeEEEEEECCCceEEEEEEEcCeeeeCCC
Q 023597 128 KDFVIMKMLPSGVYHYRFIVDECLRYAPD 156 (280)
Q Consensus 128 ~~f~~~l~Lp~G~y~YKFiVDG~W~~dp~ 156 (280)
.-|.+. |.|-|||.|. ||.|++..+
T Consensus 58 QIWlas---~sG~~hf~~~-~~~W~~~r~ 82 (105)
T PRK00446 58 ELWLAA---KSGGFHFDYK-DGEWICDRS 82 (105)
T ss_pred heeEec---CCCCccceec-CCeEEECCC
Confidence 346554 5788999995 999998754
No 82
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=22.24 E-value=76 Score=29.38 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=18.1
Q ss_pred CceEEEEEEEcCeee---eCCCCCe
Q 023597 138 SGVYHYRFIVDECLR---YAPDVPW 159 (280)
Q Consensus 138 ~G~y~YKFiVDG~W~---~dp~~P~ 159 (280)
.|.|.+||.++|+|+ .|+..|+
T Consensus 87 ~G~y~v~l~~~G~w~~V~VDd~lP~ 111 (298)
T PF00648_consen 87 NGIYTVRLFKNGEWREVTVDDRLPC 111 (298)
T ss_dssp SSEEEEEEEETTEEEEEEEES-EEE
T ss_pred CceeeEeeccCCeeeeeccchhhhc
Confidence 499999999999997 4677787
No 83
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.81 E-value=3.1e+02 Score=26.66 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=43.6
Q ss_pred ceEEEEEecCCCc------eEEEEeccCCCccCccceeeCCe---EEE--EEECCCc-eEEEEEEE----------cCee
Q 023597 94 QVAAAITWSLGGK------QVAVTGSWDNWENVDPLWRLGKD---FVI--MKMLPSG-VYHYRFIV----------DECL 151 (280)
Q Consensus 94 ~vPv~f~W~~gg~------~V~V~GSFnnW~~~ipL~rs~~~---f~~--~l~Lp~G-~y~YKFiV----------DG~W 151 (280)
.=+.+|+|...+. ++||+ =.+|....||.+++=+ |.. -..|.+| .|.|+-.| =+.|
T Consensus 113 sG~~~f~w~~TapH~t~~w~yYiT--K~~wdpnkPLt~~dlEL~p~~~i~~~g~~p~~~~~~~~~iP~~rtGy~VI~~vW 190 (308)
T COG3397 113 SGPQTFVWKATAPHNTAYWKYYIT--KPGWDPNKPLTWDDLELAPFCSITGVGLEPGKNYRHECTIPQDRTGYHVIYAVW 190 (308)
T ss_pred CCceEEEEEeecCCCCcceEEEEC--CCCCCCCCCccHHhcccccceeecccccCCCcceeEEEecCCCCcccEEEEEEE
Confidence 4477899987543 46775 4689998888886422 322 1344555 34444333 2456
Q ss_pred eeCCCCCeeeCCCCCccceeecc
Q 023597 152 RYAPDVPWECDDSGNAYNVLDLQ 174 (280)
Q Consensus 152 ~~dp~~P~~~D~~G~~NNvi~V~ 174 (280)
... |..+..+|+|+|.
T Consensus 191 q~~-------Dt~n~Fyn~iDv~ 206 (308)
T COG3397 191 QRA-------DTGNAFYNCIDVN 206 (308)
T ss_pred Eec-------cCCCcceEEEEEe
Confidence 443 5555789999985
No 84
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=20.30 E-value=1.6e+02 Score=23.84 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=18.8
Q ss_pred EEEECC-CceEEEEEEEcCeeeeCCC
Q 023597 132 IMKMLP-SGVYHYRFIVDECLRYAPD 156 (280)
Q Consensus 132 ~~l~Lp-~G~y~YKFiVDG~W~~dp~ 156 (280)
+-+-=| .|-|||.|. +|+|++..+
T Consensus 62 IWlsSpisG~~hf~~~-~~~W~~~r~ 86 (109)
T PF01491_consen 62 IWLSSPISGPFHFDYD-DGKWIDTRD 86 (109)
T ss_dssp EEEEETTTEEEEEEEE-SSSEEETTT
T ss_pred HHHhcccCCceEEEEc-CCEEEECCC
Confidence 444456 899999999 999998754
No 85
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=20.25 E-value=1.8e+02 Score=28.51 Aligned_cols=50 Identities=22% Similarity=0.088 Sum_probs=32.4
Q ss_pred CceEEEEec---cCCCccCccceeeC-CeEEEEEEC------CCceEEEEEEEcCeeeeC
Q 023597 105 GKQVAVTGS---WDNWENVDPLWRLG-KDFVIMKML------PSGVYHYRFIVDECLRYA 154 (280)
Q Consensus 105 g~~V~V~GS---FnnW~~~ipL~rs~-~~f~~~l~L------p~G~y~YKFiVDG~W~~d 154 (280)
|.++.+.|. =..|+--+..-... +....++.| ..|.|+-.|.+||++.+-
T Consensus 201 GG~i~~~G~~~~g~pW~IgI~~P~~~~~~~~~ii~l~d~aVaTSG~Y~r~~e~dG~ry~H 260 (337)
T COG1477 201 GGEIRVIGKNPDGKPWRIGIQNPFAPRGAVQGIVPLKDGAVATSGDYERYFEVDGKRYHH 260 (337)
T ss_pred CcceEEeccCCCCCCcEEEEeCCCCCCCceeEEEecCCceEEcccCceeEEEECCEEEee
Confidence 347888883 34587654333222 445555555 479999999999987543
No 86
>PF07483 W_rich_C: Tryptophan-rich Synechocystis species C-terminal domain; InterPro: IPR011121 This entry represents a tryptophan-rich domain found in membrane proteins of Synechocystis and Bradyrhizobium; it is normally found in 2 to 3 copies.
Probab=20.08 E-value=3e+02 Score=22.74 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=37.6
Q ss_pred cceEEEEEecCCCceEEEEeccCCCccCccc-eeeCCeEEEEEECCCceEEEEEEEcCeeeeC
Q 023597 93 KQVAAAITWSLGGKQVAVTGSWDNWENVDPL-WRLGKDFVIMKMLPSGVYHYRFIVDECLRYA 154 (280)
Q Consensus 93 ~~vPv~f~W~~gg~~V~V~GSFnnW~~~ipL-~rs~~~f~~~l~Lp~G~y~YKFiVDG~W~~d 154 (280)
..-+..+++.+ ..++.|+|.+|+. +.- +...+.|.+..+-+--..-+-..+|+.|.+-
T Consensus 19 ~~~~~~lk~~G---~~~~~g~~g~W~~-iaA~et~~GgyqVlWk~~~~~~~~vW~tDsngn~~ 77 (109)
T PF07483_consen 19 GGTGPQLKYNG---QPVVAGQFGGWQP-IAAEETSNGGYQVLWKNPGTDQFGVWNTDSNGNYI 77 (109)
T ss_pred CCCccEEEECC---EEEecCccCCcce-eeeEEecCCeeEEEEecCCCCeEEEEEecCCCCEE
Confidence 34455566653 6689999999998 544 4556668887775543344555567665544
Done!