BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023598
MQTLLLPAGRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTLQSSSLANRGSK
HCFPILASSQIPPTFTSQNDESEKAKLAQVSKRLENTARHFKRFGSFGFWGQLVCTVVSA
VILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRA
DVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVF
LVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVPRVA

High Scoring Gene Products

Symbol, full name Information P value
TIC21
translocon at inner membrane of chloroplasts 21 		protein from Arabidopsis thaliana 1.1e-73

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023598
        (280 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2049113 - symbol:TIC21 "translocon at inner me...   744  1.1e-73   1


>TAIR|locus:2049113 [details] [associations]
            symbol:TIC21 "translocon at inner membrane of
            chloroplasts 21" species:3702 "Arabidopsis thaliana" [GO:0009507
            "chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0009706 "chloroplast inner membrane"
            evidence=IDA] [GO:0042803 "protein homodimerization activity"
            evidence=IPI] [GO:0045037 "protein import into chloroplast stroma"
            evidence=IMP] [GO:0005381 "iron ion transmembrane transporter
            activity" evidence=IGI] [GO:0006875 "cellular metal ion
            homeostasis" evidence=IMP] [GO:0015088 "copper uptake transmembrane
            transporter activity" evidence=IGI] GO:GO:0016021 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0009706 EMBL:AC007267 GO:GO:0005381
            GO:GO:0006875 GO:GO:0045037 GO:GO:0015088 UniGene:At.22376
            UniGene:At.40435 EMBL:AY057510 EMBL:AY065215 EMBL:AY122931
            IPI:IPI00532548 PIR:B84527 RefSeq:NP_565372.1 STRING:Q9SHU7
            PaxDb:Q9SHU7 PRIDE:Q9SHU7 EnsemblPlants:AT2G15290.1 GeneID:816018
            KEGG:ath:AT2G15290 TAIR:At2g15290 eggNOG:NOG72877
            HOGENOM:HOG000238848 InParanoid:Q9SHU7 OMA:ACASQVC PhylomeDB:Q9SHU7
            ProtClustDB:CLSN2688133 Genevestigator:Q9SHU7 InterPro:IPR022051
            Pfam:PF12263 Uniprot:Q9SHU7
        Length = 296

 Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
 Identities = 168/296 (56%), Positives = 205/296 (69%)

Query:     1 MQTLLLP-AGRSGISPTAAAAS--HLRRAPSLNIGT----NVSFLSSNSLPSLKTLQSS- 52
             MQ+LLLP A  SG+S  A      H     SL+  +    N   L+     ++ + QS  
Sbjct:     1 MQSLLLPPASSSGVSAVALRPGFQHSFNHQSLSTRSLPLFNPLLLAPKKKTTISSYQSPP 60

Query:    53 SLANRG-----SKHCF-PILASSQIP--PTFTSQNDESEKAKLAQVSKRLENTARHFKRF 104
             SL+  G     SK  F P   +   P  P+    ++E +KAKLAQV+KRLE T+R+FKR 
Sbjct:    61 SLSVYGFQIGGSKPSFTPSTVAFSYPTSPSSVPGDNEVDKAKLAQVAKRLEKTSRYFKRL 120

Query:   105 GSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSE 164
             GS GFWGQLV TVV+AVILSFSI++TGK TSP TFY TA GIAAAF+SVFWSFGYIRLSE
Sbjct:   121 GSIGFWGQLVSTVVAAVILSFSIVVTGKPTSPATFYATASGIAAAFVSVFWSFGYIRLSE 180

Query:   165 KLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYY 224
             +LR+T+ DP+KAPPRADVVK L++GI VN++GMG+A+LGMQATVG LVAKALTTSANP+Y
Sbjct:   181 RLRRTSIDPAKAPPRADVVKGLRSGIMVNILGMGSALLGMQATVGFLVAKALTTSANPFY 240

Query:   225 QGITPGYSPVLALDVFLVQASANTIXXXXXXXXXXXXXXXXXXXPPSESIPVPRVA 280
             QG++ GYSPVLALDVFLVQASANT+                   P SES+ VP+VA
Sbjct:   241 QGVSQGYSPVLALDVFLVQASANTLLSHFLGLVCSLELLRSVTVPNSESVVVPKVA 296


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.130   0.374    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      280       261   0.00090  114 3  11 22  0.47    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  159 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.87u 0.07s 23.94t   Elapsed:  00:00:02
  Total cpu time:  23.87u 0.07s 23.94t   Elapsed:  00:00:02
  Start:  Fri May 10 10:25:22 2013   End:  Fri May 10 10:25:24 2013

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