BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023598
         (280 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SHU7|TIC21_ARATH Protein TIC 21, chloroplastic OS=Arabidopsis thaliana GN=TIC21 PE=1
           SV=1
          Length = 296

 Score =  329 bits (843), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/303 (61%), Positives = 224/303 (73%), Gaps = 30/303 (9%)

Query: 1   MQTLLLP-AGRSGISPTAAAASHLRRAPSLNIGTNVSFLSSNSLPSLKTL-----QSSSL 54
           MQ+LLLP A  SG+S  A     LR  P      N   LS+ SLP    L     + +++
Sbjct: 1   MQSLLLPPASSSGVSAVA-----LR--PGFQHSFNHQSLSTRSLPLFNPLLLAPKKKTTI 53

Query: 55  ANR--------------GSKHCF-PILASSQIP--PTFTSQNDESEKAKLAQVSKRLENT 97
           ++               GSK  F P   +   P  P+    ++E +KAKLAQV+KRLE T
Sbjct: 54  SSYQSPPSLSVYGFQIGGSKPSFTPSTVAFSYPTSPSSVPGDNEVDKAKLAQVAKRLEKT 113

Query: 98  ARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSF 157
           +R+FKR GS GFWGQLV TVV+AVILSFSI++TGK TSP TFY TA GIAAAF+SVFWSF
Sbjct: 114 SRYFKRLGSIGFWGQLVSTVVAAVILSFSIVVTGKPTSPATFYATASGIAAAFVSVFWSF 173

Query: 158 GYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALT 217
           GYIRLSE+LR+T+ DP+KAPPRADVVK L++GI VN++GMG+A+LGMQATVG LVAKALT
Sbjct: 174 GYIRLSERLRRTSIDPAKAPPRADVVKGLRSGIMVNILGMGSALLGMQATVGFLVAKALT 233

Query: 218 TSANPYYQGITPGYSPVLALDVFLVQASANTILSHFLGLLFSLELLRSVTLPPSESIPVP 277
           TSANP+YQG++ GYSPVLALDVFLVQASANT+LSHFLGL+ SLELLRSVT+P SES+ VP
Sbjct: 234 TSANPFYQGVSQGYSPVLALDVFLVQASANTLLSHFLGLVCSLELLRSVTVPNSESVVVP 293

Query: 278 RVA 280
           +VA
Sbjct: 294 KVA 296


>sp|Q9UI14|PRAF1_HUMAN Prenylated Rab acceptor protein 1 OS=Homo sapiens GN=RABAC1 PE=1
           SV=1
          Length = 185

 Score = 32.0 bits (71), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 26/111 (23%)

Query: 74  TFTSQNDESEKAKLAQVSKRLENTARHFKRFGSFGFWGQ-LVCTVVSAVIL--------- 123
           TF  Q   S    L ++ +RL     +++    F F G  L C V S ++L         
Sbjct: 47  TFVDQQRFSRPRNLGELCQRLVRNVEYYQSNYVFVFLGLILYCVVTSPMLLVALAVFFGA 106

Query: 124 ---------SFSIIITGKVTSPTTFYCTAGGIAAAFI-------SVFWSFG 158
                       +++ G+  SP   Y  AGGI+  F        +VFW  G
Sbjct: 107 CYILYLRTLESKLVLFGREVSPAHQYALAGGISFPFFWLAGAGSAVFWVLG 157


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.132    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,541,005
Number of Sequences: 539616
Number of extensions: 3447835
Number of successful extensions: 10221
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10216
Number of HSP's gapped (non-prelim): 15
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)