Query 023598
Match_columns 280
No_of_seqs 102 out of 115
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 05:14:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023598.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023598hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12263 DUF3611: Protein of u 100.0 2.3E-61 5E-66 424.4 23.5 175 89-268 2-183 (183)
2 PF04341 DUF485: Protein of un 88.4 5.6 0.00012 31.5 9.1 74 91-166 4-80 (91)
3 PF11239 DUF3040: Protein of u 87.5 4.1 9E-05 31.5 7.7 70 80-155 4-81 (82)
4 PF01618 MotA_ExbB: MotA/TolQ/ 87.2 15 0.00032 30.6 11.4 78 88-166 45-130 (139)
5 TIGR02796 tolQ TolQ protein. T 79.4 45 0.00097 30.2 12.0 78 90-167 111-199 (215)
6 PF10818 DUF2547: Protein of u 75.8 1.8 3.9E-05 35.4 1.8 19 108-126 3-21 (94)
7 TIGR02797 exbB tonB-system ene 74.9 53 0.0011 29.6 11.2 74 94-167 112-195 (211)
8 cd06581 TM_PBP1_LivM_like Tran 74.2 8.5 0.00018 35.2 6.0 55 147-201 132-192 (268)
9 KOG3643 GABA receptor [Signal 71.3 5.1 0.00011 40.9 4.1 68 101-168 256-337 (459)
10 PF11026 DUF2721: Protein of u 68.4 70 0.0015 26.8 10.5 74 92-165 50-124 (130)
11 cd06574 TM_PBP1_branched-chain 68.0 15 0.00032 33.7 6.1 28 146-173 129-156 (266)
12 TIGR03622 urea_t_UrtB_arc urea 65.7 18 0.00038 33.5 6.2 24 150-173 145-168 (283)
13 COG0559 LivH Branched-chain am 63.6 25 0.00054 33.8 6.9 62 146-216 154-217 (297)
14 COG0811 TolQ Biopolymer transp 61.2 1.2E+02 0.0026 27.5 10.6 76 91-167 109-195 (216)
15 PF01810 LysE: LysE type trans 61.1 71 0.0015 27.1 8.7 48 145-195 63-110 (191)
16 PLN02777 photosystem I P subun 60.5 43 0.00093 30.2 7.3 17 145-161 128-144 (167)
17 PRK10414 biopolymer transport 60.3 1.5E+02 0.0032 27.7 11.3 53 115-167 146-206 (244)
18 TIGR03409 urea_trans_UrtB urea 60.2 27 0.00058 32.4 6.4 28 146-173 151-178 (291)
19 PRK09669 putative symporter Ya 57.9 1.7E+02 0.0038 27.8 14.3 23 246-268 271-293 (444)
20 TIGR02805 exbB2 tonB-system en 57.5 60 0.0013 28.4 7.5 55 114-168 70-132 (138)
21 PF11188 DUF2975: Protein of u 57.4 97 0.0021 24.6 9.3 19 95-113 58-76 (136)
22 PRK11111 hypothetical protein; 56.8 1.3E+02 0.0027 27.6 10.0 52 143-211 153-205 (214)
23 PF11368 DUF3169: Protein of u 54.6 1.7E+02 0.0037 26.7 11.4 99 105-204 7-117 (248)
24 PRK10801 colicin uptake protei 54.0 1.8E+02 0.0039 26.7 11.3 66 102-167 122-200 (227)
25 KOG3644 Ligand-gated ion chann 53.6 9.5 0.00021 38.7 2.4 26 102-127 266-298 (457)
26 PF02694 UPF0060: Uncharacteri 53.4 62 0.0013 27.3 6.7 67 113-200 35-101 (107)
27 TIGR03408 urea_trans_UrtC urea 53.0 34 0.00074 32.1 5.9 59 143-201 172-236 (313)
28 PRK02237 hypothetical protein; 52.6 86 0.0019 26.5 7.5 67 113-200 36-103 (109)
29 cd06579 TM_PBP1_transp_AraH_li 52.5 16 0.00035 33.3 3.5 28 146-173 125-152 (263)
30 TIGR00948 2a75 L-lysine export 52.3 1.4E+02 0.003 25.4 9.0 48 146-195 60-107 (177)
31 cd06582 TM_PBP1_LivH_like Tran 52.1 45 0.00098 30.4 6.4 27 147-173 138-164 (272)
32 PRK10429 melibiose:sodium symp 51.8 2.3E+02 0.0051 27.4 14.5 19 250-268 277-295 (473)
33 COG4711 Predicted membrane pro 50.6 72 0.0016 29.9 7.3 106 79-196 62-173 (217)
34 PRK10740 branched-chain amino 49.5 42 0.00091 31.7 5.9 52 150-201 168-225 (308)
35 COG1575 MenA 1,4-dihydroxy-2-n 48.8 1.5E+02 0.0033 28.9 9.6 26 103-128 173-198 (303)
36 PF01914 MarC: MarC family int 47.1 2.1E+02 0.0045 25.7 9.7 55 138-209 142-197 (203)
37 PF07332 DUF1469: Protein of u 46.1 1.5E+02 0.0033 23.6 11.4 13 177-189 102-114 (121)
38 PF13197 DUF4013: Protein of u 45.6 1.2E+02 0.0027 25.6 7.7 50 151-202 13-63 (169)
39 PF02656 DUF202: Domain of unk 45.0 1.2E+02 0.0027 22.3 6.9 18 110-127 13-30 (73)
40 cd06580 TM_PBP1_transp_TpRbsC_ 44.9 29 0.00064 31.2 3.9 25 148-172 103-127 (234)
41 PRK11618 inner membrane ABC tr 44.8 35 0.00076 32.1 4.6 28 146-173 169-196 (317)
42 PRK09512 rbsC ribose ABC trans 44.6 27 0.00059 33.0 3.8 26 148-173 180-205 (320)
43 COG5615 Predicted integral mem 44.2 1.1E+02 0.0023 27.5 7.1 29 176-204 125-154 (161)
44 TIGR03255 PhnV 2-aminoethylpho 43.1 2.2E+02 0.0047 26.0 9.3 84 83-166 162-270 (272)
45 TIGR00427 membrane protein, Ma 42.5 2.6E+02 0.0056 25.2 10.0 50 142-208 148-198 (201)
46 COG1280 RhtB Putative threonin 42.0 1.8E+02 0.004 25.8 8.5 48 145-195 76-123 (208)
47 PRK09478 mglC beta-methylgalac 41.8 40 0.00087 32.2 4.5 52 149-200 193-250 (336)
48 PF07954 DUF1689: Protein of u 41.6 2.5E+02 0.0054 24.8 9.8 94 88-189 20-118 (152)
49 PF02653 BPD_transp_2: Branche 41.2 43 0.00092 30.1 4.4 28 146-173 137-164 (267)
50 PF11368 DUF3169: Protein of u 40.0 2.9E+02 0.0064 25.2 12.8 59 105-167 102-160 (248)
51 PF02932 Neur_chan_memb: Neuro 38.6 1.3E+02 0.0028 23.8 6.4 22 102-123 9-37 (237)
52 PRK09497 potB spermidine/putre 38.6 3.1E+02 0.0067 25.0 10.4 86 83-168 169-280 (285)
53 PF15125 TMEM238: TMEM238 prot 38.4 1E+02 0.0022 24.0 5.3 50 107-160 5-55 (65)
54 PF06799 DUF1230: Protein of u 38.4 85 0.0018 27.7 5.6 64 96-168 28-96 (144)
55 COG0053 MMT1 Predicted Co/Zn/C 38.2 2.2E+02 0.0049 27.1 8.9 33 151-183 128-161 (304)
56 PRK09699 D-allose transporter 38.2 49 0.0011 31.4 4.5 24 150-173 173-196 (312)
57 PF11712 Vma12: Endoplasmic re 37.1 1.8E+02 0.0038 24.6 7.2 56 107-162 79-137 (142)
58 PRK10209 acid-resistance membr 35.7 2.5E+02 0.0054 24.8 8.3 70 93-168 119-188 (190)
59 COG4095 Uncharacterized conser 35.2 1.7E+02 0.0036 24.1 6.4 50 111-162 4-59 (89)
60 PF10066 DUF2304: Uncharacteri 35.0 2.5E+02 0.0054 22.9 8.1 63 102-167 32-96 (115)
61 PF07077 DUF1345: Protein of u 34.8 3.3E+02 0.0072 24.3 9.4 38 91-128 34-71 (180)
62 PF14159 CAAD: CAAD domains of 33.5 2.5E+02 0.0054 22.5 8.1 20 145-164 53-72 (90)
63 PRK10929 putative mechanosensi 33.4 7.6E+02 0.016 28.4 13.1 32 184-215 671-703 (1109)
64 PRK11281 hypothetical protein; 33.2 6.6E+02 0.014 28.8 12.6 28 81-108 770-797 (1113)
65 PRK15432 autoinducer 2 ABC tra 33.0 72 0.0016 31.0 4.8 26 148-173 168-193 (344)
66 PRK15050 2-aminoethylphosphona 32.3 4E+02 0.0087 24.4 9.8 44 84-127 181-228 (296)
67 PF11694 DUF3290: Protein of u 31.9 2.2E+02 0.0048 24.8 7.1 29 107-135 14-44 (149)
68 COG1178 ThiP ABC-type Fe3+ tra 31.8 6E+02 0.013 26.3 16.8 83 83-165 159-266 (540)
69 PRK11285 araH L-arabinose tran 31.5 63 0.0014 31.0 4.1 50 151-200 190-245 (333)
70 PRK12768 CysZ-like protein; Re 31.3 4.4E+02 0.0096 24.6 12.4 14 156-169 94-107 (240)
71 PF04123 DUF373: Domain of unk 30.9 1.2E+02 0.0026 30.0 5.9 97 98-207 146-243 (344)
72 PRK11462 putative transporter; 30.6 5.2E+02 0.011 25.2 17.2 11 78-88 138-148 (460)
73 PF13664 DUF4149: Domain of un 29.6 2.6E+02 0.0057 21.5 9.8 70 95-168 28-97 (101)
74 TIGR00383 corA magnesium Mg(2+ 28.8 1.6E+02 0.0035 27.2 6.1 46 114-159 260-314 (318)
75 PF10067 DUF2306: Predicted me 28.3 2.5E+02 0.0055 22.4 6.5 19 145-164 49-67 (103)
76 PF12794 MscS_TM: Mechanosensi 27.8 5.6E+02 0.012 24.7 13.3 67 145-216 163-231 (340)
77 PRK08238 hypothetical protein; 27.7 1.9E+02 0.0042 29.5 6.9 33 135-174 423-455 (479)
78 PF00664 ABC_membrane: ABC tra 27.6 3.5E+02 0.0075 22.3 10.7 51 79-129 198-249 (275)
79 PRK15038 autoinducer 2 import 27.0 80 0.0017 30.2 3.9 26 148-173 172-197 (330)
80 PF00528 BPD_transp_1: Binding 26.4 3.4E+02 0.0074 21.8 7.2 46 82-127 71-120 (185)
81 PF14018 DUF4234: Domain of un 26.3 2.7E+02 0.0059 20.6 8.3 57 110-166 4-72 (75)
82 TIGR01297 CDF cation diffusion 26.0 4.7E+02 0.01 23.3 10.9 16 111-126 57-72 (268)
83 PRK11085 magnesium/nickel/coba 26.0 1.8E+02 0.0039 28.1 6.1 46 114-159 258-312 (316)
84 TIGR00910 2A0307_GadC glutamat 25.9 6.9E+02 0.015 25.1 11.9 19 104-122 83-101 (507)
85 PRK11275 pstC phosphate transp 25.7 6E+02 0.013 24.4 11.6 89 80-168 186-314 (319)
86 PRK09546 zntB zinc transporter 25.4 1.8E+02 0.0039 27.3 5.9 46 114-159 266-320 (324)
87 PRK10714 undecaprenyl phosphat 25.3 5.8E+02 0.013 24.1 9.5 28 98-126 228-255 (325)
88 COG0598 CorA Mg2+ and Co2+ tra 25.2 1.9E+02 0.0041 27.5 6.0 45 115-159 265-318 (322)
89 PF10306 FLILHELTA: Hypothetic 25.2 43 0.00094 26.9 1.5 20 90-109 63-82 (86)
90 PF07787 DUF1625: Protein of u 25.1 1.8E+02 0.0039 26.6 5.7 23 95-117 180-202 (248)
91 PRK10929 putative mechanosensi 25.1 6.7E+02 0.015 28.8 11.0 67 136-204 830-897 (1109)
92 COG3247 HdeD Uncharacterized c 24.8 3.7E+02 0.0079 24.5 7.5 71 91-168 113-183 (185)
93 PHA03231 glycoprotein BALF4; P 24.3 2.1E+02 0.0045 31.7 6.8 71 91-164 658-731 (829)
94 TIGR02840 spore_YtaF putative 24.3 5.3E+02 0.011 23.2 8.6 52 108-162 29-85 (206)
95 COG5416 Uncharacterized integr 23.8 3.5E+02 0.0076 22.6 6.5 28 141-168 69-96 (98)
96 TIGR00780 ccoN cytochrome c ox 23.3 5.2E+02 0.011 26.5 9.0 26 101-126 376-401 (474)
97 PF10066 DUF2304: Uncharacteri 23.2 2E+02 0.0044 23.4 5.1 55 110-166 3-60 (115)
98 TIGR03226 PhnU 2-aminoethylpho 23.1 5.6E+02 0.012 23.9 8.7 46 82-127 198-247 (312)
99 PF14143 YrhC: YrhC-like prote 22.9 3.8E+02 0.0082 21.0 7.8 68 93-168 2-70 (72)
100 COG0700 SpmB Uncharacterized m 22.3 1.2E+02 0.0026 27.3 3.8 30 180-209 133-162 (162)
101 PF12273 RCR: Chitin synthesis 22.1 1E+02 0.0022 25.6 3.1 18 151-168 12-29 (130)
102 PRK11301 livM leucine/isoleuci 22.0 2E+02 0.0044 28.8 5.8 17 157-173 282-298 (419)
103 PRK11102 bicyclomycin/multidru 21.9 3.9E+02 0.0084 24.1 7.2 18 140-157 235-252 (377)
104 PF00957 Synaptobrevin: Synapt 21.9 3.7E+02 0.0079 20.5 7.6 26 85-110 41-66 (89)
105 PRK10995 inner membrane protei 21.7 6.1E+02 0.013 23.0 11.1 23 189-211 191-213 (221)
106 COG2981 CysZ Uncharacterized p 21.7 7.3E+02 0.016 23.9 9.7 24 139-169 87-110 (250)
107 PF06300 Tsp45I: Tsp45I type I 21.3 83 0.0018 30.1 2.7 27 81-107 77-103 (261)
108 PF04103 CD20: CD20-like famil 21.2 32 0.00069 27.8 0.0 23 183-205 57-79 (150)
109 COG1300 SpoIIM Uncharacterized 21.2 6.4E+02 0.014 23.0 8.7 104 104-217 83-203 (207)
110 PTZ00207 hypothetical protein; 21.2 6.9E+02 0.015 26.3 9.6 33 88-120 11-45 (591)
111 PRK11122 artM arginine transpo 20.6 5.8E+02 0.013 22.4 8.3 90 78-168 105-217 (222)
112 PF13347 MFS_2: MFS/sugar tran 20.5 1.8E+02 0.0039 27.5 4.9 84 99-201 225-308 (428)
113 PF03209 PUCC: PUCC protein; 20.4 9.1E+02 0.02 24.5 11.4 28 98-127 44-71 (403)
114 PF06166 DUF979: Protein of un 20.1 8.6E+02 0.019 24.1 12.0 102 102-218 87-192 (308)
No 1
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=100.00 E-value=2.3e-61 Score=424.41 Aligned_cols=175 Identities=51% Similarity=0.811 Sum_probs=161.8
Q ss_pred HhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch-------hHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 89 QVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPT-------TFYCTAGGIAAAFISVFWSFGYIR 161 (280)
Q Consensus 89 ~v~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~-------~~~~t~~GLv~L~~SifwsfrYtR 161 (280)
++++++||+|++|||+||+|||+|++||+||+++|+|+++++++.+++. .+|++.+|++++++|+||+|||+|
T Consensus 2 ~~~~~~~~~a~~lr~~Gwi~FW~QlvLgvVs~~iL~F~~~~~~~~~~~~~~~G~~~gl~~a~~gl~~l~~si~~~fry~R 81 (183)
T PF12263_consen 2 SVPPALQRIARALRRLGWIGFWIQLVLGVVSAVILLFANLFSGRATSPNRNPGLGIGLFLAICGLVALFFSIFWSFRYTR 81 (183)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999987666655443 588888899999999999999999
Q ss_pred HHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCCCCcchHHHHH
Q 023598 162 LSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALTTSANPYYQGITPGYSPVLALDVFL 241 (280)
Q Consensus 162 LarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLvGmlltllGaqA~VG~LvaKaLsq~~~p~~qg~t~~~~~I~aLDVfv 241 (280)
+||||++ +||++||+|+|+.|.||+|+++|++||++|++|+|++||+|++|+++|++++ +.++++++|+++|||+
T Consensus 82 lar~L~~--~~~~~~P~k~~~~~~l~~Gl~~nl~Gmllt~lG~~a~vG~L~ak~lsqp~g~---~~~~~~~~i~~lDvf~ 156 (183)
T PF12263_consen 82 LARRLRS--PNPAKRPSKADVVRLLRIGLIINLVGMLLTLLGAQATVGTLVAKALSQPQGA---AIYNPSQPIRALDVFV 156 (183)
T ss_pred HHHHhcc--cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc---cccCCCCccchHHHHH
Confidence 9999994 6899999999999999999999999999999999999999999999987655 3446668999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 023598 242 VQASANTILSHFLGLLFSLELLRSVTL 268 (280)
Q Consensus 242 VqANtNtI~AHFvGLv~SLWLL~rv~~ 268 (280)
||||+|+|+|||+|+++|||||+||||
T Consensus 157 vqAn~n~i~AHfvGlv~sLwLL~rv~r 183 (183)
T PF12263_consen 157 VQANTNTILAHFVGLVFSLWLLRRVTR 183 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999986
No 2
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=88.42 E-value=5.6 Score=31.48 Aligned_cols=74 Identities=14% Similarity=0.087 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh--hcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 91 SKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSII--ITGKVTSPT-TFYCTAGGIAAAFISVFWSFGYIRLSEKL 166 (280)
Q Consensus 91 ~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~--~~g~~~sp~-~~~~t~~GLv~L~~SifwsfrYtRLarrL 166 (280)
.++.+++.+.=||++|.-+.+-+++=. +.+++.++. +-+..-.++ .-+....|+....++.-.++.|+|.+++-
T Consensus 4 ~p~f~~L~r~r~r~~~~l~~i~l~~y~--~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv~~An~~ 80 (91)
T PF04341_consen 4 SPEFQELVRRRRRLAWPLSAIFLVLYF--GFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWLYVRRANRE 80 (91)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 467899999999999987776554332 233333331 112222212 33444457777788999999999999873
No 3
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=87.51 E-value=4.1 Score=31.52 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=40.6
Q ss_pred hHHHHHHHHHhhHHHH----HHHHHHHhh----hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHH
Q 023598 80 DESEKAKLAQVSKRLE----NTARHFKRF----GSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFI 151 (280)
Q Consensus 80 ~~~~~~~~~~v~~~l~----riA~~lRr~----GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~~~~~t~~GLv~L~~ 151 (280)
.|.||..|+|+.++|. +.++.++.. .+-.-++..++.++.+++++..-++.+.. +....|+++.+.
T Consensus 4 Se~E~r~L~eiEr~L~~~DP~fa~~l~~~~~~~~~~r~~~~~~~~~v~gl~llv~G~~~~~~------~~~v~G~~v~~~ 77 (82)
T PF11239_consen 4 SEHEQRRLEEIERQLRADDPRFAARLRSGRPRRPSRRRRVLGVLLVVVGLALLVAGVVLSQP------PLGVAGFVVMVA 77 (82)
T ss_pred CHHHHHHHHHHHHHHHhcCcHHHHHhccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHH
Confidence 4778889999999884 477777762 22223344455555555444443212221 244457777777
Q ss_pred HHHH
Q 023598 152 SVFW 155 (280)
Q Consensus 152 Sifw 155 (280)
..+|
T Consensus 78 ~~~~ 81 (82)
T PF11239_consen 78 GAVW 81 (82)
T ss_pred HHHh
Confidence 7776
No 4
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=87.24 E-value=15 Score=30.64 Aligned_cols=78 Identities=19% Similarity=0.193 Sum_probs=46.7
Q ss_pred HHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc--------hhHHHHHHHHHHHHHHHHHHHHH
Q 023598 88 AQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSP--------TTFYCTAGGIAAAFISVFWSFGY 159 (280)
Q Consensus 88 ~~v~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp--------~~~~~t~~GLv~L~~SifwsfrY 159 (280)
.+.-+++++--..++.+++++==+=+ ||.|-+++..|..+.......+ ..+++|+.|+++.....++...+
T Consensus 45 ~~~~~~~~~~~~~l~~i~~~aP~lGL-lGTv~Gmi~~f~~l~~~~~~~~~~l~~gi~~Al~tT~~GL~vai~~~~~~~~l 123 (139)
T PF01618_consen 45 EREEERLERNLSILRTIASIAPLLGL-LGTVIGMIEAFQALAETGSGDPSQLAGGISVALITTAYGLVVAIPALPFYNYL 123 (139)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556556666666666654444 7788888888887532222221 23889999988876666554444
Q ss_pred HHHHHHH
Q 023598 160 IRLSEKL 166 (280)
Q Consensus 160 tRLarrL 166 (280)
.|-.+++
T Consensus 124 ~~~~~~~ 130 (139)
T PF01618_consen 124 KRRVERI 130 (139)
T ss_pred HHHHHHH
Confidence 4444444
No 5
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=79.40 E-value=45 Score=30.23 Aligned_cols=78 Identities=17% Similarity=0.137 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHhhc-CCCCCc--------hhHHHHHHHHHHHHHHHHHHHH
Q 023598 90 VSKRLENTARHFKRFGSFGFWGQL--VCTVVSAVILSFSIIIT-GKVTSP--------TTFYCTAGGIAAAFISVFWSFG 158 (280)
Q Consensus 90 v~~~l~riA~~lRr~GWIgFWiQL--VLGvVSaviLlFa~~~~-g~~~sp--------~~~~~t~~GLv~L~~Sifwsfr 158 (280)
...+..++-+.++.++.++-=.=+ .||.|-+.+=.|..+.. +...++ ..+.+|..||++...++...-.
T Consensus 111 ~~~~~~~le~~l~~L~ti~~~aPllGLLGTV~Gmi~aF~~i~~~~g~~~~~~la~GI~~ALitTa~GL~vAIPali~yn~ 190 (215)
T TIGR02796 111 LNRESEKLESGLPFLATIGSTSPFIGLFGTVWGIMHSFQAIGGSKNQATLAVVAPGIAEALIATAIGLFAAIPAVIAYNK 190 (215)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666655433222 38999999999998643 221221 1289999999999777765555
Q ss_pred HHHHHHHHh
Q 023598 159 YIRLSEKLR 167 (280)
Q Consensus 159 YtRLarrLr 167 (280)
+.|--+++.
T Consensus 191 f~~~i~~~~ 199 (215)
T TIGR02796 191 LSTQVNKIE 199 (215)
T ss_pred HHHHHHHHH
Confidence 566666665
No 6
>PF10818 DUF2547: Protein of unknown function (DUF2547); InterPro: IPR020508 This entry contains proteins with no known function.
Probab=75.78 E-value=1.8 Score=35.43 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023598 108 GFWGQLVCTVVSAVILSFS 126 (280)
Q Consensus 108 gFWiQLVLGvVSaviLlFa 126 (280)
-||.||.||+|++..|=.+
T Consensus 3 ~FWSQLLlsmiAIFALP~~ 21 (94)
T PF10818_consen 3 PFWSQLLLSMIAIFALPEA 21 (94)
T ss_pred ccHHHHHHHHHHHHHccch
Confidence 3999999999987655433
No 7
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=74.88 E-value=53 Score=29.61 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhhHHHHHHH--HHHHHHHHHHHHHHhhcCCCCCc-----h---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 94 LENTARHFKRFGSFGFWGQL--VCTVVSAVILSFSIIITGKVTSP-----T---TFYCTAGGIAAAFISVFWSFGYIRLS 163 (280)
Q Consensus 94 l~riA~~lRr~GWIgFWiQL--VLGvVSaviLlFa~~~~g~~~sp-----~---~~~~t~~GLv~L~~SifwsfrYtRLa 163 (280)
.+++-+.+..++-|+==.=+ .||.|-+++=.|..+......++ + .+.+|.+||++...+++..-.+.+--
T Consensus 112 ~~~le~~l~~L~ti~~~APllGLLGTV~Gmi~aF~~ia~~g~~~~~~lA~GI~eALitTA~GL~VAIPAli~yn~f~~ri 191 (211)
T TIGR02797 112 GRRMSRGTGVLATIGATAPFVGLFGTVWGIMNSFIGISKSQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARSI 191 (211)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444332222 38889999888987642222222 1 28899999999877765555555555
Q ss_pred HHHh
Q 023598 164 EKLR 167 (280)
Q Consensus 164 rrLr 167 (280)
+++.
T Consensus 192 ~~~~ 195 (211)
T TIGR02797 192 AGYR 195 (211)
T ss_pred HHHH
Confidence 5554
No 8
>cd06581 TM_PBP1_LivM_like Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=74.21 E-value=8.5 Score=35.16 Aligned_cols=55 Identities=11% Similarity=0.003 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCC------CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 023598 147 AAAFISVFWSFGYIRLSEKLRKTASDPS------KAPPRADVVKSLKNGIGVNLVGMGAAI 201 (280)
Q Consensus 147 v~L~~SifwsfrYtRLarrLr~~~~~p~------~rPskadv~r~Lr~GL~vNLvGmlltl 201 (280)
++++..+||-++|||.|+++|...+||+ .+++|-...-..--|....+.|++.+.
T Consensus 132 ~~~~~~l~~~l~~T~~G~~lrAvg~n~~aA~~~Gi~v~rv~~~~~~isg~laglaG~l~a~ 192 (268)
T cd06581 132 LLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAH 192 (268)
T ss_pred HHHHHHHHHHHHcChHhhHHHHHhcCHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999998666642 222333333333445555566655554
No 9
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=71.33 E-value=5.1 Score=40.85 Aligned_cols=68 Identities=9% Similarity=0.115 Sum_probs=40.7
Q ss_pred HHhhhhHHHHHH-------HHHHHHHHHHHHHHHhhcCCCCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 101 FKRFGSFGFWGQ-------LVCTVVSAVILSFSIIITGKVTSP-------TTFYCTAGGIAAAFISVFWSFGYIRLSEKL 166 (280)
Q Consensus 101 lRr~GWIgFWiQ-------LVLGvVSaviLlFa~~~~g~~~sp-------~~~~~t~~GLv~L~~SifwsfrYtRLarrL 166 (280)
+--+.|++||+. +.||+-.++.+.+-....+..... ..++.+|+.+|.+..-=|=+-.|.+-++..
T Consensus 256 iVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~~~~~~ 335 (459)
T KOG3643|consen 256 IVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEYAAVNYMFKRRGA 335 (459)
T ss_pred hhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 345799999986 567777766655544212222221 224555655665555567777888777765
Q ss_pred hc
Q 023598 167 RK 168 (280)
Q Consensus 167 r~ 168 (280)
++
T Consensus 336 ~k 337 (459)
T KOG3643|consen 336 RK 337 (459)
T ss_pred hh
Confidence 54
No 10
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=68.43 E-value=70 Score=26.81 Aligned_cols=74 Identities=15% Similarity=0.042 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 92 KRLENTARHFKRFGSFGFWGQLVCTVVSA-VILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEK 165 (280)
Q Consensus 92 ~~l~riA~~lRr~GWIgFWiQLVLGvVSa-viLlFa~~~~g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRLarr 165 (280)
++++.+-+..+.+.|--++.=+..-.++. ++++|.....+.+.+....++...+++.+..+.....+=++++-+
T Consensus 50 ~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~~~~~~~lF~~am~~l~~sl~~fl~Ev~ls~~ 124 (130)
T PF11026_consen 50 RELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDLSWLVAILFVLAMLLLIASLVLFLREVRLSTR 124 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555544333222222222 222333222344434334444455788888888888888888765
No 11
>cd06574 TM_PBP1_branched-chain-AA_like Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBP
Probab=67.96 E-value=15 Score=33.66 Aligned_cols=28 Identities=21% Similarity=0.276 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 023598 146 IAAAFISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 146 Lv~L~~SifwsfrYtRLarrLr~~~~~p 173 (280)
.+++.+-.+|-+++||.||++|.-.+||
T Consensus 129 ~~~~~~~~~~~l~~T~~G~~lrAv~~n~ 156 (266)
T cd06574 129 IVLLVLFLVIWFLRTKLGLAMRATGDNP 156 (266)
T ss_pred HHHHHHHHHHHHhhchhchhhhhccCCH
Confidence 4444566788899999999999755553
No 12
>TIGR03622 urea_t_UrtB_arc urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtB subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=65.74 E-value=18 Score=33.50 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC
Q 023598 150 FISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 150 ~~SifwsfrYtRLarrLr~~~~~p 173 (280)
.+..+|-++++|+||++|...+||
T Consensus 145 ~~~~~~~l~rT~~Gr~lrAv~~n~ 168 (283)
T TIGR03622 145 LVGLYVLFTRTEFGVRARATIQDP 168 (283)
T ss_pred HHHHHHHHHHhHHhHhheeeeCCH
Confidence 345778899999999999755554
No 13
>COG0559 LivH Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]
Probab=63.63 E-value=25 Score=33.80 Aligned_cols=62 Identities=26% Similarity=0.272 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 023598 146 IAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGM--QATVGLLVAKAL 216 (280)
Q Consensus 146 Lv~L~~SifwsfrYtRLarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLvGmlltllGa--qA~VG~LvaKaL 216 (280)
-+++...+|+.++.||+||++|...+| |+-++. .|+=++.+.++.-.+|. -+..|.|.+-.-
T Consensus 154 s~~~~~~l~~~l~rT~~G~a~RA~~~n----~~~A~l-----~GInv~~v~~~tf~lg~~lAglaGvl~~~~~ 217 (297)
T COG0559 154 SLALLLGLWLLLRRTRLGRALRAVAEN----RKMAAL-----LGINVERVIALTFALGGALAGLAGVLLAPIY 217 (297)
T ss_pred HHHHHHHHHHHHHHhHHhHHHHhhhcC----HHHHHH-----hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344458899999999999999975454 333332 34555555555544443 255666666554
No 14
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=61.19 E-value=1.2e+02 Score=27.47 Aligned_cols=76 Identities=21% Similarity=0.121 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc-----h---hHHHHHHHHHHHHHHHHHHHHH
Q 023598 91 SKRLENTARHFKRF---GSFGFWGQLVCTVVSAVILSFSIIITGKVTSP-----T---TFYCTAGGIAAAFISVFWSFGY 159 (280)
Q Consensus 91 ~~~l~riA~~lRr~---GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp-----~---~~~~t~~GLv~L~~SifwsfrY 159 (280)
.+..+++.+.+..+ |-++=-+=| +|.|-+++-.|..+..++..++ + .+.+|..||++...+++..-++
T Consensus 109 ~~~~~~l~~~L~~LatI~s~aP~lGL-~GTV~GIm~aF~~i~~~~~~~~a~vA~GIseAL~aTA~GL~vAIPAvi~yn~l 187 (216)
T COG0811 109 AREERRLERGLTLLATIGSIAPFLGL-LGTVWGIMPAFIGIGAGGGADLAVVAPGISEALIATAIGLFVAIPAVVAYNVL 187 (216)
T ss_pred HHHHHHHHCCCHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHhccCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555544443 333333333 7888888888887653343332 2 2999999999997777766666
Q ss_pred HHHHHHHh
Q 023598 160 IRLSEKLR 167 (280)
Q Consensus 160 tRLarrLr 167 (280)
.|..+++.
T Consensus 188 ~r~~~~~~ 195 (216)
T COG0811 188 RRKVEELL 195 (216)
T ss_pred HHHHHHHH
Confidence 67766665
No 15
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=61.11 E-value=71 Score=27.12 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHH
Q 023598 145 GIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLV 195 (280)
Q Consensus 145 GLv~L~~SifwsfrYtRLarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLv 195 (280)
-++..++-+|.+|+..|-+++-.. .+.+ ..++.+..+..+.|+.+|+.
T Consensus 63 ~~~G~~~L~~lg~~~~~~~~~~~~--~~~~-~~~~~~~~~~f~~g~~~~~~ 110 (191)
T PF01810_consen 63 KLLGALYLLYLGYKLLRSKFSSKS--STQS-EAKKQSKSKSFLTGFLLNLL 110 (191)
T ss_pred HHHHHHHHHHHHHHHHhcccCcch--hhhh-hhccccHHHHHHHHHHHHHH
Confidence 344445667888888887776553 1111 12255677888888888765
No 16
>PLN02777 photosystem I P subunit (PSI-P)
Probab=60.51 E-value=43 Score=30.20 Aligned_cols=17 Identities=0% Similarity=0.116 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023598 145 GIAAAFISVFWSFGYIR 161 (280)
Q Consensus 145 GLv~L~~SifwsfrYtR 161 (280)
=|+-++++.||.|||..
T Consensus 128 ELVGigYs~WF~yRyLL 144 (167)
T PLN02777 128 ELVGIGYTGWFAYKNLV 144 (167)
T ss_pred HHhhhhhhhhhhhhHhc
Confidence 34556799999999963
No 17
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=60.32 E-value=1.5e+02 Score=27.74 Aligned_cols=53 Identities=23% Similarity=0.165 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023598 115 CTVVSAVILSFSIIITGKVTSP--------TTFYCTAGGIAAAFISVFWSFGYIRLSEKLR 167 (280)
Q Consensus 115 LGvVSaviLlFa~~~~g~~~sp--------~~~~~t~~GLv~L~~SifwsfrYtRLarrLr 167 (280)
||.|-+++-.|..+......++ ..+++|.+||++..-+++..-.+.+-.+++.
T Consensus 146 lGTV~Gmi~aF~~ia~~g~~~~~~va~GI~eALitTa~GL~vAIPAliayn~f~~ri~~~~ 206 (244)
T PRK10414 146 FGTVWGIMNSFIGIAQTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGYK 206 (244)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998642222222 1289999999998777665555566556554
No 18
>TIGR03409 urea_trans_UrtB urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=60.21 E-value=27 Score=32.37 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 023598 146 IAAAFISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 146 Lv~L~~SifwsfrYtRLarrLr~~~~~p 173 (280)
.+++.+.++|-.+++|.||++|.-.+||
T Consensus 151 ~~~~~~~~~~~l~rT~~G~~lrAi~~n~ 178 (291)
T TIGR03409 151 ALAVLLALALLLYRTRLGLRVRAVTQNR 178 (291)
T ss_pred HHHHHHHHHHHHHHChhhHhheeeeCCH
Confidence 3345567888999999999999755554
No 19
>PRK09669 putative symporter YagG; Provisional
Probab=57.92 E-value=1.7e+02 Score=27.77 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Q 023598 246 ANTILSHFLGLLFSLELLRSVTL 268 (280)
Q Consensus 246 tNtI~AHFvGLv~SLWLL~rv~~ 268 (280)
....++-++|..+.-||.+|..+
T Consensus 271 ~~~~i~~ii~~~~~~~l~~r~gk 293 (444)
T PRK09669 271 VTGMIAGLFGALLSERLLGKFDR 293 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCh
Confidence 34455566676666778777654
No 20
>TIGR02805 exbB2 tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems.
Probab=57.51 E-value=60 Score=28.36 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023598 114 VCTVVSAVILSFSIIITGKVTSP--------TTFYCTAGGIAAAFISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 114 VLGvVSaviLlFa~~~~g~~~sp--------~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~ 168 (280)
.||.|.+++..|.....+....+ ..+.+|..|+++..-++.+...+.|-.+++++
T Consensus 70 LLGTV~GmI~~F~~lg~~g~~~~~~la~GIs~ALitTa~GL~VAIpali~yn~l~~rv~~~~~ 132 (138)
T TIGR02805 70 LLGTVIGIMVTFYQMGHGGGIDPSVIMLGLSLALKATALGLLVAIPSLVFYNALLRKVEVNRL 132 (138)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999997632221222 12889999999997777776666777777664
No 21
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=57.35 E-value=97 Score=24.65 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhHHHHHHH
Q 023598 95 ENTARHFKRFGSFGFWGQL 113 (280)
Q Consensus 95 ~riA~~lRr~GWIgFWiQL 113 (280)
++.++.+|++||.-.+..+
T Consensus 58 ~~n~~~l~~ig~~~l~~~~ 76 (136)
T PF11188_consen 58 PENIRRLRRIGWLLLIISI 76 (136)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4667888888887665544
No 22
>PRK11111 hypothetical protein; Provisional
Probab=56.82 E-value=1.3e+02 Score=27.59 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 143 AGGIAAAFISVFWSFGY-IRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLL 211 (280)
Q Consensus 143 ~~GLv~L~~SifwsfrY-tRLarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLvGmlltllGaqA~VG~L 211 (280)
...+++..+.+|+.++| .++.|+|-+ --.-++.-+.|++++.+|.|-++--+
T Consensus 153 ~~ai~~~~~~~~l~l~~s~~i~r~LG~-----------------~G~~vi~RimGliL~aiaVq~i~~Gi 205 (214)
T PRK11111 153 SVAIALFALCCWLLFRMAPWLVRLLGQ-----------------TGINVITRIMGLLLMALGIEFIVTGI 205 (214)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556778888877 356666532 23445667899999999999877554
No 23
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=54.61 E-value=1.7e+02 Score=26.69 Aligned_cols=99 Identities=13% Similarity=0.099 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcC--CC-CC-c---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 023598 105 GSFGFWGQLVCTVVSAVILSFSIIITG--KV-TS-P---TTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAP 177 (280)
Q Consensus 105 GWIgFWiQLVLGvVSaviLlFa~~~~g--~~-~s-p---~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~~~~~p~~rP 177 (280)
++..|-.-+++|.+-+++.-|-....+ .+ .. + ...+....+.++.++...+.+.|.+-++|.++...+.. .-
T Consensus 7 ~~~~~~~~illg~~iGg~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~-de 85 (248)
T PF11368_consen 7 RILRFLLLILLGGLIGGFIGFFIGRIGNLLDNISFSTFFNIPWISFIALLIIIILFLLTFYFIYKSRKYKKLYEEEE-DE 85 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cc
Confidence 566677777777776666555432222 11 11 1 11112222333333444444444444444332111100 01
Q ss_pred ChHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 023598 178 PRAD-----VVKSLKNGIGVNLVGMGAAILGM 204 (280)
Q Consensus 178 skad-----v~r~Lr~GL~vNLvGmlltllGa 204 (280)
...| .-|.+..+.+++.+.+.++++..
T Consensus 86 D~~~~~~~~~~r~~~~~~i~~~i~~i~~~~~l 117 (248)
T PF11368_consen 86 DENEEYYRKMNRKLEYATIFFNISIIISFLSL 117 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 45677778888888777776543
No 24
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=53.97 E-value=1.8e+02 Score=26.74 Aligned_cols=66 Identities=20% Similarity=0.159 Sum_probs=40.8
Q ss_pred HhhhhHHHHHHH-----HHHHHHHHHHHHHHhhcCCCCCc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023598 102 KRFGSFGFWGQL-----VCTVVSAVILSFSIIITGKVTSP--------TTFYCTAGGIAAAFISVFWSFGYIRLSEKLR 167 (280)
Q Consensus 102 Rr~GWIgFWiQL-----VLGvVSaviLlFa~~~~g~~~sp--------~~~~~t~~GLv~L~~SifwsfrYtRLarrLr 167 (280)
|++.|++=..++ .||.|-+++-.|..+......++ ..+.+|..||++...+++..-.+.+--+++.
T Consensus 122 ~~l~~L~ti~~~aP~lGLlGTV~Gmi~aF~~i~~~g~~~~~~~a~GI~~ALitTa~GL~vAIPAli~yN~f~~ri~~i~ 200 (227)
T PRK10801 122 THIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLE 200 (227)
T ss_pred cccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 48899999999988632222222 1288999999998777655555555555544
No 25
>KOG3644 consensus Ligand-gated ion channel [Signal transduction mechanisms]
Probab=53.61 E-value=9.5 Score=38.73 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.9
Q ss_pred HhhhhHHHHHH-------HHHHHHHHHHHHHHH
Q 023598 102 KRFGSFGFWGQ-------LVCTVVSAVILSFSI 127 (280)
Q Consensus 102 Rr~GWIgFWiQ-------LVLGvVSaviLlFa~ 127 (280)
=-..|++||++ +.|||.+.+.|.|-.
T Consensus 266 ViiSWvSFWLd~~A~PARv~LgvtsLLtLttq~ 298 (457)
T KOG3644|consen 266 VIISWVSFWLDPKAVPARVTLGVTSLLTLTTQS 298 (457)
T ss_pred hhhhhhheecCCCcccceEEehHHHHHHHHHHh
Confidence 34789999997 689999999888775
No 26
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=53.39 E-value=62 Score=27.26 Aligned_cols=67 Identities=24% Similarity=0.366 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHH
Q 023598 113 LVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGV 192 (280)
Q Consensus 113 LVLGvVSaviLlFa~~~~g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~~~~~p~~rPskadv~r~Lr~GL~v 192 (280)
++.|.++.. +|+.+.+=+....+-.|++++|+-+. .|+.|.|.. + ..+|.|-|. .|..+
T Consensus 35 ~~~G~~~L~--lfg~l~Tl~p~~fGRvYAAYGGvfI~-~Sl~W~w~v-------d------g~~Pd~~D~-----iGa~i 93 (107)
T PF02694_consen 35 LLPGALSLA--LFGWLLTLQPAAFGRVYAAYGGVFIV-ASLLWGWLV-------D------GVRPDRWDW-----IGAAI 93 (107)
T ss_pred HhhHHHHHH--HHHHHhhcCcccchhHHHHhhhhHHH-HHHHHHhhh-------c------CcCCChHHH-----HhHHH
Confidence 455655543 56666665664456699999888776 999998753 1 247888873 45555
Q ss_pred HHHHHHHH
Q 023598 193 NLVGMGAA 200 (280)
Q Consensus 193 NLvGmllt 200 (280)
-++|+.+-
T Consensus 94 ~L~G~~iI 101 (107)
T PF02694_consen 94 CLVGVAII 101 (107)
T ss_pred HHHhHHhe
Confidence 56665543
No 27
>TIGR03408 urea_trans_UrtC urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=53.02 E-value=34 Score=32.15 Aligned_cols=59 Identities=10% Similarity=-0.031 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC------CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 023598 143 AGGIAAAFISVFWSFGYIRLSEKLRKTASDPS------KAPPRADVVKSLKNGIGVNLVGMGAAI 201 (280)
Q Consensus 143 ~~GLv~L~~SifwsfrYtRLarrLr~~~~~p~------~rPskadv~r~Lr~GL~vNLvGmlltl 201 (280)
+..++++.+-.+|.++++|.||.++.-.+|+. .++.|-.+.-..--|.+..+.|++.+.
T Consensus 172 ~~~~~~~~~~~~~~l~~S~~Gr~l~Ai~~n~~aA~~~Gi~v~r~k~~af~isg~laglaG~l~a~ 236 (313)
T TIGR03408 172 TAALLALAFLLCRWLVRSRFGRVLIAIRDAENRVRFLGYDPANYKVFVFVLSAGIAGIAGALYVP 236 (313)
T ss_pred HHHHHHHHHHHHHHHHhChhhhhheeecCCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556777889999999999997444432 122222223333344455555555443
No 28
>PRK02237 hypothetical protein; Provisional
Probab=52.58 E-value=86 Score=26.51 Aligned_cols=67 Identities=27% Similarity=0.375 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHH
Q 023598 113 LVCTVVSAVILSFSIIITGKV-TSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIG 191 (280)
Q Consensus 113 LVLGvVSaviLlFa~~~~g~~-~sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~~~~~p~~rPskadv~r~Lr~GL~ 191 (280)
++.|.++.. +|+.+.+=+. ...+-.|++++|+-+. .|+.|.|.. + ..+|.+-|. .|..
T Consensus 36 ~~pg~~~L~--lfg~llTl~p~~~~GRvYAAYGGvyI~-~Sl~W~w~v-------d------g~~Pd~~D~-----iGa~ 94 (109)
T PRK02237 36 LLPGALSLA--LFGWLLTLQPDAAFGRVYAAYGGVYVA-GSLLWLWVV-------D------GVRPDRWDW-----IGAA 94 (109)
T ss_pred HHHHHHHHH--HHHHHHhcCCchhhhhHHHHhhhHHHH-HHHHHHHHh-------c------CcCCChhHH-----HhHH
Confidence 566766654 5666656554 3345689999888776 899998752 1 247888773 4556
Q ss_pred HHHHHHHHH
Q 023598 192 VNLVGMGAA 200 (280)
Q Consensus 192 vNLvGmllt 200 (280)
+-++||.+-
T Consensus 95 v~L~G~~iI 103 (109)
T PRK02237 95 ICLVGMAVI 103 (109)
T ss_pred HHHHhHHHh
Confidence 666666543
No 29
>cd06579 TM_PBP1_transp_AraH_like Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to ge
Probab=52.48 E-value=16 Score=33.25 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 023598 146 IAAAFISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 146 Lv~L~~SifwsfrYtRLarrLr~~~~~p 173 (280)
.+++.+-++|.++++|+|+++|.-.+||
T Consensus 125 ~~~~~~~l~~~l~rT~~G~~lrAv~~n~ 152 (263)
T cd06579 125 ALAVALVAWFLLRRTRFGRYLYAVGGNP 152 (263)
T ss_pred HHHHHHHHHHHHHhCccCCEEEEECCCH
Confidence 3445577899999999999999755553
No 30
>TIGR00948 2a75 L-lysine exporter.
Probab=52.28 E-value=1.4e+02 Score=25.42 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHH
Q 023598 146 IAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLV 195 (280)
Q Consensus 146 Lv~L~~SifwsfrYtRLarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLv 195 (280)
++-.++=+|.+|+-.|-+++... ..+.. .+++.+-.+..+.|+.+|+.
T Consensus 60 ~~Ga~YLlylg~~~~r~~~~~~~-~~~~~-~~~~~~~~~~f~~G~~~~l~ 107 (177)
T TIGR00948 60 WGGALFLLWYGFLAAKTAWRGPG-ALVPD-EPKKMGLKKVLAMTLAVTLL 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-ccccc-cccccCHHHHHHHHHHHHHh
Confidence 44445667888888886543211 01111 11111224668899999876
No 31
>cd06582 TM_PBP1_LivH_like Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=52.11 E-value=45 Score=30.45 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCC
Q 023598 147 AAAFISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 147 v~L~~SifwsfrYtRLarrLr~~~~~p 173 (280)
+++++-.+|-++++|.||+++.-.+||
T Consensus 138 ~~~~~~~~~~l~rt~~G~~l~Aig~n~ 164 (272)
T cd06582 138 LVLLAALYLFLRRTRLGRAIRAVAQNP 164 (272)
T ss_pred HHHHHHHHHHHHHCHHhHHHhhHhcCH
Confidence 334456778899999999999755553
No 32
>PRK10429 melibiose:sodium symporter; Provisional
Probab=51.80 E-value=2.3e+02 Score=27.42 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhCC
Q 023598 250 LSHFLGLLFSLELLRSVTL 268 (280)
Q Consensus 250 ~AHFvGLv~SLWLL~rv~~ 268 (280)
++.+++..+.-||.+|+.+
T Consensus 277 i~~ii~~~~~~~l~~r~gk 295 (473)
T PRK10429 277 AANLVTLILFPRLVKSLSR 295 (473)
T ss_pred HHHHHHHHHHHHHHHHcCc
Confidence 3445665556677776664
No 33
>COG4711 Predicted membrane protein [Function unknown]
Probab=50.60 E-value=72 Score=29.89 Aligned_cols=106 Identities=17% Similarity=0.252 Sum_probs=55.8
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCC------CCCchhHHHHHHHHHHHHHH
Q 023598 79 NDESEKAKLAQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGK------VTSPTTFYCTAGGIAAAFIS 152 (280)
Q Consensus 79 ~~~~~~~~~~~v~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~------~~sp~~~~~t~~GLv~L~~S 152 (280)
.|+.-|...+.||..+...=..=+. |- |.|..++.-+|.++++.|.+..+.- ..+|...+..+ +++
T Consensus 62 ~E~~~k~v~e~vp~~~g~~l~r~~l-g~-~~~~Dl~q~vIGAi~lA~pfapTeEvwllA~~isp~h~lal~------~~~ 133 (217)
T COG4711 62 KEIVIKEVFESVPFLLGELLERNQL-GD-GTLADLVQEVIGAIVLAFPFAPTEEVWLLAYRISPYHSLALV------LVV 133 (217)
T ss_pred HHHHHHHHHHhhhHHHHHHhccccc-cc-ccHHHHHHHHHHHHhhccccCchhHHHHHHHHcCHHHHHHHH------HHH
Confidence 3455566666666654433222222 22 8999999999999999988753322 12332222222 345
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 023598 153 VFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVG 196 (280)
Q Consensus 153 ifwsfrYtRLarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLvG 196 (280)
+...|.++.-++ .+ +++.+++.+.-+.+-++.-+++..+-
T Consensus 134 l~I~y~fvy~a~-f~---~~~~~~~~~g~vp~rl~~tmv~y~~~ 173 (217)
T COG4711 134 LVIMYSFVYTAK-FG---NDKKREEGAGFVPRRLRTTMVIYFVS 173 (217)
T ss_pred HHHHHHHHHHhh-cC---CCcccccccceeeeehHHHHHHHHHH
Confidence 555555554443 22 23333455555555555444444333
No 34
>PRK10740 branched-chain amino acid transporter permease subunit LivH; Reviewed
Probab=49.52 E-value=42 Score=31.71 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCC------CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 023598 150 FISVFWSFGYIRLSEKLRKTASDPS------KAPPRADVVKSLKNGIGVNLVGMGAAI 201 (280)
Q Consensus 150 ~~SifwsfrYtRLarrLr~~~~~p~------~rPskadv~r~Lr~GL~vNLvGmlltl 201 (280)
++.++|..+++|.||.+|.-.+||+ .+++|-.+.-..--|.+..+.|++.+.
T Consensus 168 ~~~l~~~l~rs~~G~~lrAv~~n~~aA~~~Gin~~r~~~~af~is~~laglaG~l~a~ 225 (308)
T PRK10740 168 MLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQ 225 (308)
T ss_pred HHHHHHHHHHChhhheeeeeeCCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788899999999997555542 222333333333334444555554443
No 35
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=48.84 E-value=1.5e+02 Score=28.92 Aligned_cols=26 Identities=19% Similarity=0.076 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh
Q 023598 103 RFGSFGFWGQLVCTVVSAVILSFSII 128 (280)
Q Consensus 103 r~GWIgFWiQLVLGvVSaviLlFa~~ 128 (280)
+.+|..++.=+-+|+.++.|++-++.
T Consensus 173 ~~~~~~ll~slp~gil~~~Il~aNNi 198 (303)
T COG1575 173 RLSWAILLPSLPVGILIANILLANNL 198 (303)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccc
Confidence 46777888888888888887776663
No 36
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=47.06 E-value=2.1e+02 Score=25.74 Aligned_cols=55 Identities=11% Similarity=0.181 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 138 TFYCTAGGIAAAFISVFWSFGYI-RLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVG 209 (280)
Q Consensus 138 ~~~~t~~GLv~L~~SifwsfrYt-RLarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLvGmlltllGaqA~VG 209 (280)
....+..++++.+.-+|..++|- ++.|++-+ --.-++.=+.|++++.+|.|-.+-
T Consensus 142 ~~~~~~~ai~~~~~~~~l~l~~a~~i~~~lG~-----------------~g~~vi~Ri~Glil~aiavq~i~~ 197 (203)
T PF01914_consen 142 SLLIVLIAILLVALITYLILRFADKIMRRLGK-----------------TGLQVITRIMGLILAAIAVQMILS 197 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777788888884 55555531 122345568899999999997653
No 37
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=46.12 E-value=1.5e+02 Score=23.64 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=7.4
Q ss_pred CChHHHHHHHHHH
Q 023598 177 PPRADVVKSLKNG 189 (280)
Q Consensus 177 Pskadv~r~Lr~G 189 (280)
|.-.++.+.+|.-
T Consensus 102 ~~~~~t~~~l~~d 114 (121)
T PF07332_consen 102 PPFEETIAELKED 114 (121)
T ss_pred CCHHHHHHHHHHH
Confidence 3345677766653
No 38
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=45.58 E-value=1.2e+02 Score=25.62 Aligned_cols=50 Identities=18% Similarity=0.309 Sum_probs=36.6
Q ss_pred HHHHHHHHH-HHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 151 ISVFWSFGY-IRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAIL 202 (280)
Q Consensus 151 ~SifwsfrY-tRLarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLvGmlltll 202 (280)
+..+...+| .|+-|.-.. ++++.-|+-+|-.+.++.|+...++.+...++
T Consensus 13 i~~~~~~GY~~~v~~~~~~--g~~~~lP~~~~~~~l~~~G~~~~ii~ivy~i~ 63 (169)
T PF13197_consen 13 IGLFLLLGYLVRVIRSTAI--GGSDPLPEFNDWGELFVDGLKAFIISIVYSIP 63 (169)
T ss_pred HHHHHHHHHHHHHHHHhhc--cCCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677 488888743 23344677789999999999999888776653
No 39
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=45.04 E-value=1.2e+02 Score=22.27 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023598 110 WGQLVCTVVSAVILSFSI 127 (280)
Q Consensus 110 WiQLVLGvVSaviLlFa~ 127 (280)
|+...++.+...+.+.-.
T Consensus 13 W~Rt~l~l~~~g~~l~~~ 30 (73)
T PF02656_consen 13 WIRTALALVGVGLALLRF 30 (73)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666677776666555554
No 40
>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=44.89 E-value=29 Score=31.22 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCC
Q 023598 148 AAFISVFWSFGYIRLSEKLRKTASD 172 (280)
Q Consensus 148 ~L~~SifwsfrYtRLarrLr~~~~~ 172 (280)
++++-++|-++++|+||++|.-.+|
T Consensus 103 ~~~~~~~~~l~~T~~G~~lrAi~~n 127 (234)
T cd06580 103 LLVILVWLLLYRTRFGLRLRAVGEN 127 (234)
T ss_pred HHHHHHHHHHHhCccceeeeeccCC
Confidence 3345678889999999999975444
No 41
>PRK11618 inner membrane ABC transporter permease protein YjfF; Provisional
Probab=44.83 E-value=35 Score=32.09 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 023598 146 IAAAFISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 146 Lv~L~~SifwsfrYtRLarrLr~~~~~p 173 (280)
.+++.+-++|.+++||.||++|.-.+|+
T Consensus 169 ~l~~~~~~~~~l~rT~~G~~lrAvg~n~ 196 (317)
T PRK11618 169 MLAVVAIGIFLAHRTRFGNNVYAIGGNA 196 (317)
T ss_pred HHHHHHHHHHHHHhChhcceeeeeCCCH
Confidence 3344466788899999999999765554
No 42
>PRK09512 rbsC ribose ABC transporter permease protein; Reviewed
Probab=44.62 E-value=27 Score=32.97 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC
Q 023598 148 AAFISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 148 ~L~~SifwsfrYtRLarrLr~~~~~p 173 (280)
++++-+||-++|+|.|+++|.-.+||
T Consensus 180 ~~~~~~~~~l~~T~~G~~lrAvg~n~ 205 (320)
T PRK09512 180 IVFLAAWYMLHHTRLGRYIYALGGNE 205 (320)
T ss_pred HHHHHHHHHHHhChhcceEEEECCCH
Confidence 33456778899999999999765554
No 43
>COG5615 Predicted integral membrane protein [Function unknown]
Probab=44.24 E-value=1.1e+02 Score=27.45 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=19.7
Q ss_pred CCChHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 023598 176 APPRADVVKSLKNGIGVNL-VGMGAAILGM 204 (280)
Q Consensus 176 rPskadv~r~Lr~GL~vNL-vGmlltllGa 204 (280)
.|+|.|-.+-+|.=.=+|+ +|+++.++|.
T Consensus 125 ~e~~~~a~~kIRk~t~vni~lGllli~l~~ 154 (161)
T COG5615 125 WEKKYDAMKKIRKITHVNITLGLLLIILGL 154 (161)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667787777777766774 5666666654
No 44
>TIGR03255 PhnV 2-aminoethylphosphonate ABC transport system, membrane component PhnV. This membrane component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=43.14 E-value=2.2e+02 Score=25.95 Aligned_cols=84 Identities=18% Similarity=0.151 Sum_probs=51.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHh---------hcCCCCC--ch----------
Q 023598 83 EKAKLAQVSKRLENTARHFKRFGSFGFWG----QLVCTVVSAVILSFSII---------ITGKVTS--PT---------- 137 (280)
Q Consensus 83 ~~~~~~~v~~~l~riA~~lRr~GWIgFWi----QLVLGvVSaviLlFa~~---------~~g~~~s--p~---------- 137 (280)
-++.++++++++++.|+.+.--.|=.||= ++.=+++++.++.|... ..+.+.. +.
T Consensus 162 ~~~~l~~i~~~l~EAA~~lGas~~~~f~~I~lP~l~p~i~~~~~l~f~~s~~~f~~~~~l~~~~~~tl~~~i~~~~~~~~ 241 (272)
T TIGR03255 162 AAAALAPELADIEEAAASLGAPPAMRLRHVLLPLLMPAIMAALALGFALSLGELGATLMIYPPGFATLPIAIFGATDRGN 241 (272)
T ss_pred HHHHHHhCCHHHHHHHHHcCCCHHHHhHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeeeHHHHHHHhhcCc
Confidence 45778999999999999999766666652 33346677777777652 1122211 10
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 138 TFYCTAGGIAAAFISVFWSFGYIRLSEKL 166 (280)
Q Consensus 138 ~~~~t~~GLv~L~~SifwsfrYtRLarrL 166 (280)
.-.....+++++.++....+-+.|+.|+|
T Consensus 242 ~~~a~a~a~il~~~~~~~~~~~~~~~~~~ 270 (272)
T TIGR03255 242 IADAAALSILLLAASLLALIAIAAIAKRL 270 (272)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01122334555556666677777777766
No 45
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=42.49 E-value=2.6e+02 Score=25.21 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 142 TAGGIAAAFISVFWSFGYI-RLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATV 208 (280)
Q Consensus 142 t~~GLv~L~~SifwsfrYt-RLarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLvGmlltllGaqA~V 208 (280)
...++++..+-+|..++|- ++.|.|-+ --.-++.=+.|++++.+|.|-++
T Consensus 148 ~~~ai~~~~~~~~~~l~~s~~l~~~LG~-----------------~g~~il~Ri~GliL~aIaVq~i~ 198 (201)
T TIGR00427 148 VVLAIALVALITWLLFRYSAFIIRRLGR-----------------TGINVITRIMGLLLAAIAVEFIV 198 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555556667777763 55555532 12335666899999999999764
No 46
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=41.98 E-value=1.8e+02 Score=25.83 Aligned_cols=48 Identities=21% Similarity=0.349 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHHHHHHHH
Q 023598 145 GIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNGIGVNLV 195 (280)
Q Consensus 145 GLv~L~~SifwsfrYtRLarrLr~~~~~p~~rPskadv~r~Lr~GL~vNLv 195 (280)
-++-.++=+|.+|+-.|-.+...+ .+...+++... .|..+.|+++|+.
T Consensus 76 k~~GaaYL~ylg~~~~ra~~~~~~--~~~~~~~~~~~-~~~f~~G~~~~l~ 123 (208)
T COG1280 76 KLAGAAYLLYLGWKALRAGGAALA--EEAAGAPSSSR-RKAFRRGLLVNLL 123 (208)
T ss_pred HHHHHHHHHHHHHHHHhccccccc--ccccccccchh-HHHHHHHHHHHhh
Confidence 344455667777776665533321 12111222222 4789999999985
No 47
>PRK09478 mglC beta-methylgalactoside transporter inner membrane component; Provisional
Probab=41.82 E-value=40 Score=32.20 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCC------CCCChHHHHHHHHHHHHHHHHHHHHH
Q 023598 149 AFISVFWSFGYIRLSEKLRKTASDPS------KAPPRADVVKSLKNGIGVNLVGMGAA 200 (280)
Q Consensus 149 L~~SifwsfrYtRLarrLr~~~~~p~------~rPskadv~r~Lr~GL~vNLvGmllt 200 (280)
+.+..++.+++||+||++|.-.+||+ .++.|-.+.-..--|...-+.|++.+
T Consensus 193 ~~~~~~~~l~rT~~G~~lrAvg~n~~aA~~~GI~v~r~~~~a~~isg~laglaG~l~a 250 (336)
T PRK09478 193 AVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEA 250 (336)
T ss_pred HHHHHHHHHhhChhhheeeEeCCCHHHHHHcCCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999997655542 23333333334444444444454443
No 48
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=41.58 E-value=2.5e+02 Score=24.82 Aligned_cols=94 Identities=22% Similarity=0.272 Sum_probs=56.7
Q ss_pred HHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCC-C--c--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 88 AQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVT-S--P--TTFYCTAGGIAAAFISVFWSFGYIRL 162 (280)
Q Consensus 88 ~~v~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~-s--p--~~~~~t~~GLv~L~~SifwsfrYtRL 162 (280)
.++++.+++++..--..||.||= .|+..=. ...-. -++... . | -.|+..+.|+..++++...+-+|. .
T Consensus 20 ~eL~~~~q~i~~~~~~~g~~~~~----~gF~~Pt-~y~~y-k~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~-y 92 (152)
T PF07954_consen 20 LELAKDLQSIARKSNLGGYGGFM----AGFFAPT-AYYRY-KTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQ-Y 92 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhhHH-HHHHH-hcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHH-H
Confidence 35678899999999999998872 2222111 11111 011111 1 1 236667779999999999988885 3
Q ss_pred HHHHhccCCCCCCCCChHHHHHHHHHH
Q 023598 163 SEKLRKTASDPSKAPPRADVVKSLKNG 189 (280)
Q Consensus 163 arrLr~~~~~p~~rPskadv~r~Lr~G 189 (280)
-+++.+..++ .......|+.+.+..|
T Consensus 93 ~kk~~~l~~~-~~~~~q~~vwk~m~~~ 118 (152)
T PF07954_consen 93 NKKLNSLDPD-SSKQRQYEVWKLMDYG 118 (152)
T ss_pred HHHHhccCCC-cchhHHHHHHHhcccC
Confidence 3455532122 3456668888888776
No 49
>PF02653 BPD_transp_2: Branched-chain amino acid transport system / permease component; InterPro: IPR001851 This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as Escherichia coli LivH P08340 from SWISSPROT and LivM P22729 from SWISSPROT both of which are form the LIV-I transport system []. Also found with in this family are proteins from the galactose transport system permease [] and a ribose transport system []. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=41.20 E-value=43 Score=30.06 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 023598 146 IAAAFISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 146 Lv~L~~SifwsfrYtRLarrLr~~~~~p 173 (280)
.+++.+.+++.+++||+||++|.-.+||
T Consensus 137 ~~~~~~~~~~~l~~T~~G~~~rav~~n~ 164 (267)
T PF02653_consen 137 ALLVAVLLWFLLKRTRLGRALRAVGDNP 164 (267)
T ss_pred HHHHHHHHhccccccchHHHHHhccccH
Confidence 3444567789999999999999754553
No 50
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=39.96 E-value=2.9e+02 Score=25.17 Aligned_cols=59 Identities=10% Similarity=0.198 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023598 105 GSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLR 167 (280)
Q Consensus 105 GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr 167 (280)
+-+-+=++.++..++..+ +.. .+.......++..+..++.+.+.++....+.+.=++++
T Consensus 102 ~~i~~~i~~i~~~~~l~~---~~~-~~~~~~~~~l~~~i~~~v~~i~~i~~~~~~~K~~k~i~ 160 (248)
T PF11368_consen 102 ATIFFNISIIISFLSLFI---GYV-LGNISNKSSLFIIIPFLVLLILTIILQKFLRKTIKKIR 160 (248)
T ss_pred HHHHHHHHHHHHHHHHHH---HHH-HhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444455566666555443 211 12222334466666667888888999999999988887
No 51
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=38.62 E-value=1.3e+02 Score=23.81 Aligned_cols=22 Identities=9% Similarity=0.316 Sum_probs=14.6
Q ss_pred HhhhhHHHHHH-------HHHHHHHHHHH
Q 023598 102 KRFGSFGFWGQ-------LVCTVVSAVIL 123 (280)
Q Consensus 102 Rr~GWIgFWiQ-------LVLGvVSaviL 123 (280)
--+.|++||+- +.||+...+.+
T Consensus 9 ~~~s~~~f~~~~~~~~~rv~l~it~lL~~ 37 (237)
T PF02932_consen 9 VVLSWLSFWLPPESGPERVTLGITTLLAM 37 (237)
T ss_dssp HHHHHHHHHHHHHSTHHHHHHHHHHHHHH
T ss_pred HHHHHhheEeCccccccccccchhHHHHH
Confidence 35789999975 45565555544
No 52
>PRK09497 potB spermidine/putrescine ABC transporter membrane protein; Reviewed
Probab=38.58 E-value=3.1e+02 Score=24.98 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=50.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHh---------hcCCCCCc--hhH--------
Q 023598 83 EKAKLAQVSKRLENTARHFKRFGSFGFWG----QLVCTVVSAVILSFSII---------ITGKVTSP--TTF-------- 139 (280)
Q Consensus 83 ~~~~~~~v~~~l~riA~~lRr~GWIgFWi----QLVLGvVSaviLlFa~~---------~~g~~~sp--~~~-------- 139 (280)
=++.++++++++++.|+...--.|=-||= ++-=+++++.++.|... ..|..+.. ...
T Consensus 169 ~~~~l~~i~~~l~EAA~~~Gas~~~~f~~I~lP~~~p~i~~~~~l~~~~~~~~f~~~~~lg~~~~~~l~~~i~~~~~~~~ 248 (285)
T PRK09497 169 LYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMFYVSDLLGGAKNLLIGNVIKSQFLNIR 248 (285)
T ss_pred HHHHHHhCCHHHHHHHHHcCCCHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHhhhc
Confidence 46778899999999999999888888882 12223334444444321 12222211 111
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023598 140 ---YCTAGGIAAAFISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 140 ---~~t~~GLv~L~~SifwsfrYtRLarrLr~ 168 (280)
..+..+++.+.+.....+-|.|+.|++++
T Consensus 249 ~~~~aaa~a~~~~li~~~~~~~~~~~~~~~~~ 280 (285)
T PRK09497 249 DWPFGAATSITLTIVMGLMLLVYYRASKLLNK 280 (285)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 12223455555666666678889888875
No 53
>PF15125 TMEM238: TMEM238 protein family
Probab=38.44 E-value=1e+02 Score=23.97 Aligned_cols=50 Identities=28% Similarity=0.441 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH-HHHHHHHH
Q 023598 107 FGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFIS-VFWSFGYI 160 (280)
Q Consensus 107 IgFWiQLVLGvVSaviLlFa~~~~g~~~sp~~~~~t~~GLv~L~~S-ifwsfrYt 160 (280)
+-||.-+++=++..++|+-.+ +.+-...+ ++.+.|-++.++| +||-+.|+
T Consensus 5 ~~f~laV~fD~vGl~~Ll~Gi-Fa~l~f~D---~lvY~GaliiflSL~~Wv~WYt 55 (65)
T PF15125_consen 5 HFFWLAVVFDVVGLVMLLTGI-FAPLDFYD---FLVYTGALIIFLSLLWWVFWYT 55 (65)
T ss_pred ehhHHHHHHHHhhHHHHHHHH-hcchhHHH---HHHHHhHHHHHHHHHHHHHHHh
Confidence 458887777777766555554 23332222 2344455555677 68888887
No 54
>PF06799 DUF1230: Protein of unknown function (DUF1230); InterPro: IPR009631 This family represents Ycf36, which is found in plants, encoded in the genomes of algal chloroplasts and in cyanobacteria. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.39 E-value=85 Score=27.65 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=34.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023598 96 NTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTT-----FYCTAGGIAAAFISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 96 riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~~-----~~~t~~GLv~L~~SifwsfrYtRLarrLr~ 168 (280)
.....+++++|+..|.=++.+-|++. ++ .....+.. ...++..++++.+-+|.+|.|++ +||.+
T Consensus 28 ~~~~y~~~l~~~w~~~~~~~~pia~~----S~---~~~~~~~~~~l~~~~ga~~~~~l~llRlyLGW~YV~--~RL~s 96 (144)
T PF06799_consen 28 ELKSYLKRLLWIWLISFLVFGPIAAG----SF---PPEKDPLEFILSGAVGALLLLLLVLLRLYLGWSYVG--DRLLS 96 (144)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhee----ec---CccccHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH--hhhcc
Confidence 45567888888866655555544332 11 11122222 22233344555677999999974 66653
No 55
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=38.22 E-value=2.2e+02 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=18.8
Q ss_pred HHHHHHHHH-HHHHHHHhccCCCCCCCCChHHHH
Q 023598 151 ISVFWSFGY-IRLSEKLRKTASDPSKAPPRADVV 183 (280)
Q Consensus 151 ~SifwsfrY-tRLarrLr~~~~~p~~rPskadv~ 183 (280)
+..+|-++| .|.|||..+..-..+.-..|.|..
T Consensus 128 ~~~~~l~~~~~~~~kk~~S~aL~Ada~h~~sD~~ 161 (304)
T COG0053 128 VIKEALYRYLRRVGKKTNSQALIADALHHRSDVL 161 (304)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHH
Confidence 455666777 589999875222222334455544
No 56
>PRK09699 D-allose transporter subunit; Provisional
Probab=38.20 E-value=49 Score=31.41 Aligned_cols=24 Identities=8% Similarity=0.211 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCC
Q 023598 150 FISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 150 ~~SifwsfrYtRLarrLr~~~~~p 173 (280)
.+-.+|-++|||.||+++.-.+|+
T Consensus 173 ~~~~~~~l~~T~~Gr~l~AvG~N~ 196 (312)
T PRK09699 173 ALILWFLTTRMRLGRNIYALGGNK 196 (312)
T ss_pred HHHHHHHHHhChhhheeeEECCCH
Confidence 356778899999999999765554
No 57
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=37.14 E-value=1.8e+02 Score=24.60 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 107 FGFWGQLVCTVVSAVILSFSII--IT-GKVTSPTTFYCTAGGIAAAFISVFWSFGYIRL 162 (280)
Q Consensus 107 IgFWiQLVLGvVSaviLlFa~~--~~-g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRL 162 (280)
+++=+++++++++..+..|... .. +.+..--.+.+..+|+++++.=+|+..+|.+=
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~k 137 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYLRK 137 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455677888888776666432 11 22222234677778888888889998888753
No 58
>PRK10209 acid-resistance membrane protein; Provisional
Probab=35.70 E-value=2.5e+02 Score=24.77 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023598 93 RLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 93 ~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~ 168 (280)
-+-++..++|.-++-++|-+++.|+++.++=++-.. ..|..-..++ ++++...-++.++-+..+|.++|+
T Consensus 119 Gi~~i~~a~~~~~~~~~~~~l~~Gil~iilGi~il~-----~~P~~~~~~l-~~ligi~li~~Gi~~l~la~~~r~ 188 (190)
T PRK10209 119 GIIRLMSGYKQRKMKGSWLQIVIGVLDLVIAWLLLG-----AGPQVSITLV-TTLVGIEMIFSSFSLFSFASLFKK 188 (190)
T ss_pred HHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHH-----hChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666655566788889999988763332211 1232222223 344444556667777788887764
No 59
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=35.24 E-value=1.7e+02 Score=24.05 Aligned_cols=50 Identities=14% Similarity=0.192 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHh------hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 111 GQLVCTVVSAVILSFSII------ITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRL 162 (280)
Q Consensus 111 iQLVLGvVSaviLlFa~~------~~g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRL 162 (280)
.|.+.|.+++++..|++. ...+++...++.... +..-+++.|.-++|.+-
T Consensus 4 ~~~viG~ia~ilttf~flPQ~iki~ktK~t~~Isl~~fi--i~~ia~~lwliygILi~ 59 (89)
T COG4095 4 FIEVIGTIAGILTTFAFLPQLIKIIKTKNTASISLPMFI--ILNIALFLWLIYGILIN 59 (89)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccccHHHHH--HHHHHHHHHHHHHHHHc
Confidence 478899999999999984 345666544433222 22234667777887654
No 60
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=35.00 E-value=2.5e+02 Score=22.87 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=30.7
Q ss_pred HhhhhHHHHHHHH-HHHHHHHHHHHHHhhcCCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023598 102 KRFGSFGFWGQLV-CTVVSAVILSFSIIITGKVTSPTT-FYCTAGGIAAAFISVFWSFGYIRLSEKLR 167 (280)
Q Consensus 102 Rr~GWIgFWiQLV-LGvVSaviLlFa~~~~g~~~sp~~-~~~t~~GLv~L~~SifwsfrYtRLarrLr 167 (280)
..+-|+.+|+=++ +++.+-++=.++.. -|=..++.. +|+.. +++++...+.+-+..|+-+|++
T Consensus 32 ~~l~Wl~~~i~~l~~~ifP~~~~~vA~~-lGi~~~~n~lf~~~i--~~ll~~~~~l~~~is~le~~i~ 96 (115)
T PF10066_consen 32 YSLLWLVFSIILLILSIFPNILDWVAKL-LGIGRPPNLLFYLGI--LFLLVIIFSLYVRISRLEEKIK 96 (115)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHH-HCCCchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567887775442 22233333333332 233333333 33333 4444455666666666666665
No 61
>PF07077 DUF1345: Protein of unknown function (DUF1345); InterPro: IPR009781 This family consists of several hypothetical bacterial proteins of around 230 residues in length. The function of this family is unknown.
Probab=34.83 E-value=3.3e+02 Score=24.25 Aligned_cols=38 Identities=18% Similarity=0.070 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 023598 91 SKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSII 128 (280)
Q Consensus 91 ~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~ 128 (280)
+++.++.++.-+.-.|.-+++=++-.++|.+.+.+...
T Consensus 34 ~~~~r~~a~~ed~~~~~~~~~~~~a~~asl~ai~~~l~ 71 (180)
T PF07077_consen 34 PERTRRRARREDEGRWVILLLVLVAAFASLVAIVLLLA 71 (180)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777788888777777777776666653
No 62
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=33.54 E-value=2.5e+02 Score=22.46 Aligned_cols=20 Identities=10% Similarity=0.320 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023598 145 GIAAAFISVFWSFGYIRLSE 164 (280)
Q Consensus 145 GLv~L~~SifwsfrYtRLar 164 (280)
=++-++++.||.|||..-++
T Consensus 53 ElvGlgyt~wF~~ryLL~~~ 72 (90)
T PF14159_consen 53 ELVGLGYTGWFVYRYLLFAE 72 (90)
T ss_pred HHHHHHHHhHHHHHHHcChH
Confidence 45666799999999975443
No 63
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=33.36 E-value=7.6e+02 Score=28.38 Aligned_cols=32 Identities=34% Similarity=0.271 Sum_probs=20.6
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 184 KSLKNGIG-VNLVGMGAAILGMQATVGLLVAKA 215 (280)
Q Consensus 184 r~Lr~GL~-vNLvGmlltllGaqA~VG~LvaKa 215 (280)
+.+|..++ +-++=|+++++||-.+...|..+.
T Consensus 671 ~~l~~~l~~~P~~l~~l~~~GY~yTa~~L~~~l 703 (1109)
T PRK10929 671 HALWNLLIGAPLVAALASALGYLATAQALLARL 703 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565554 345556688899988777665554
No 64
>PRK11281 hypothetical protein; Provisional
Probab=33.16 E-value=6.6e+02 Score=28.80 Aligned_cols=28 Identities=18% Similarity=-0.007 Sum_probs=21.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhHH
Q 023598 81 ESEKAKLAQVSKRLENTARHFKRFGSFG 108 (280)
Q Consensus 81 ~~~~~~~~~v~~~l~riA~~lRr~GWIg 108 (280)
|.|.-.++++..+..++-+.++.+.|+.
T Consensus 770 ee~~~~~~~i~~~~~~l~~~~~~~~~~~ 797 (1113)
T PRK11281 770 EEPTLALEQVNQQSLRLTDLLLFALFFV 797 (1113)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888888888888888777
No 65
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=33.05 E-value=72 Score=30.98 Aligned_cols=26 Identities=8% Similarity=0.253 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC
Q 023598 148 AAFISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 148 ~L~~SifwsfrYtRLarrLr~~~~~p 173 (280)
++.+-++|.++++|.||+++.-.+||
T Consensus 168 ~l~~~~~~~l~rT~~G~~l~Aig~n~ 193 (344)
T PRK15432 168 ILILAMAWLLAKTAFGRSFYATGDNL 193 (344)
T ss_pred HHHHHHHHHHHHChHhhheeeeCCCH
Confidence 34466778889999999999755553
No 66
>PRK15050 2-aminoethylphosphonate transport system permease PhnU; Provisional
Probab=32.32 E-value=4e+02 Score=24.44 Aligned_cols=44 Identities=14% Similarity=-0.042 Sum_probs=32.8
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHH
Q 023598 84 KAKLAQVSKRLENTARHFKRFGSFGFWG----QLVCTVVSAVILSFSI 127 (280)
Q Consensus 84 ~~~~~~v~~~l~riA~~lRr~GWIgFWi----QLVLGvVSaviLlFa~ 127 (280)
++.++++++++++.|+.+.--.|=-||- ++.=+++++.++.|..
T Consensus 181 ~~~l~~i~~~l~eAA~~lGas~~~~~~~I~lP~l~p~i~~~~~l~f~~ 228 (296)
T PRK15050 181 LAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLL 228 (296)
T ss_pred HHHHHhCCHHHHHHHHHcCCCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4568999999999999998888888874 4444556666666654
No 67
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=31.86 E-value=2.2e+02 Score=24.83 Aligned_cols=29 Identities=10% Similarity=0.274 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--hcCCCCC
Q 023598 107 FGFWGQLVCTVVSAVILSFSII--ITGKVTS 135 (280)
Q Consensus 107 IgFWiQLVLGvVSaviLlFa~~--~~g~~~s 135 (280)
..-|+|.++.++.+++++|..+ ..++-.+
T Consensus 14 ~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~t 44 (149)
T PF11694_consen 14 QNDYLRYILIIILLLVLIFFFIKYLRNRLDT 44 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3679999999999888888875 3444433
No 68
>COG1178 ThiP ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
Probab=31.82 E-value=6e+02 Score=26.29 Aligned_cols=83 Identities=19% Similarity=0.120 Sum_probs=50.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhhHHHH-HH---HHHHHHHHHHHHHHHh---------hcCCC-CCch-----------
Q 023598 83 EKAKLAQVSKRLENTARHFKRFGSFGFW-GQ---LVCTVVSAVILSFSII---------ITGKV-TSPT----------- 137 (280)
Q Consensus 83 ~~~~~~~v~~~l~riA~~lRr~GWIgFW-iQ---LVLGvVSaviLlFa~~---------~~g~~-~sp~----------- 137 (280)
-++.++++++.+++.|+.++--+|=-|| +. +-=++.++..|+|-.. ..+.. +=+.
T Consensus 159 ~~~al~~i~~~~~EaAr~LGa~~~~~F~~V~lPllrPai~~~~~Lvf~~~l~dFg~p~~LG~~~~Tl~t~IY~~~~~~~~ 238 (540)
T COG1178 159 VLAALETIPPSLEEAARTLGASRWQVFRKVTLPLLRPAIAAGALLVFMLCLADFGTPLILGGGYTTLETAIYQAIMSSFD 238 (540)
T ss_pred HHHHHHhCChhHHHHHHHcCCChhhHHHHhhHHhhhHHHHHHHHHHHHHHHHhhhhHHHhcCCcceeHHHHHHHHHhcCc
Confidence 4678999999999999999999999999 33 3334455555554431 12331 1000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 138 TFYCTAGGIAAAFISVFWSFGYIRLSEK 165 (280)
Q Consensus 138 ~~~~t~~GLv~L~~SifwsfrYtRLarr 165 (280)
.--++...+++++++.-.-+-+.|+.++
T Consensus 239 ~~~Aa~la~lll~~~~~ll~~~~~~~~~ 266 (540)
T COG1178 239 LARAALLALLLLLITAALLLLERRLRRA 266 (540)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1112333455556666666777777774
No 69
>PRK11285 araH L-arabinose transporter permease protein; Provisional
Probab=31.52 E-value=63 Score=31.00 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCC------CCCChHHHHHHHHHHHHHHHHHHHHH
Q 023598 151 ISVFWSFGYIRLSEKLRKTASDPS------KAPPRADVVKSLKNGIGVNLVGMGAA 200 (280)
Q Consensus 151 ~SifwsfrYtRLarrLr~~~~~p~------~rPskadv~r~Lr~GL~vNLvGmllt 200 (280)
+-.||-.++||.||+++.-.+|++ .+++|-.+.-..--|...-+.|++.+
T Consensus 190 ~~~~~~l~~T~~Gr~l~Avg~N~~aA~~~GI~v~r~~~~af~isg~lAglAG~l~a 245 (333)
T PRK11285 190 VVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILA 245 (333)
T ss_pred HHHHHHHHhChhhcEEeEECCCHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHHHH
Confidence 456788899999999997655542 22333333333334444444444443
No 70
>PRK12768 CysZ-like protein; Reviewed
Probab=31.25 E-value=4.4e+02 Score=24.61 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcc
Q 023598 156 SFGYIRLSEKLRKT 169 (280)
Q Consensus 156 sfrYtRLarrLr~~ 169 (280)
++-|-.++++.+++
T Consensus 94 apF~~~lae~VE~~ 107 (240)
T PRK12768 94 GFFLDDVAEIVERE 107 (240)
T ss_pred HHhHHHHHHHHHhh
Confidence 45567899999763
No 71
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=30.86 E-value=1.2e+02 Score=29.96 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=50.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-hcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 023598 98 ARHFKRFGSFGFWGQLVCTVVSAVILSFSII-ITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKA 176 (280)
Q Consensus 98 A~~lRr~GWIgFWiQLVLGvVSaviLlFa~~-~~g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~~~~~p~~r 176 (280)
.+++|+.=-===+.+.+||+-..++|+|+.. ..|. +. + ..++++++++.|.-+|=.++-+.+++...+
T Consensus 146 ~~YlKk~l~Dp~~~~~~lGvPG~~lLiy~i~~l~~~---~~--~--a~~~i~~~iG~yll~kGfgld~~~~~~~~~---- 214 (344)
T PF04123_consen 146 GRYLKKALSDPEYRRTFLGVPGLILLIYAILALLGY---PA--Y--ALGIILLLIGLYLLYKGFGLDDYLREWLER---- 214 (344)
T ss_pred HHHHHHhhcChhhhceeecchHHHHHHHHHHHHHcc---hH--H--HHHHHHHHHHHHHHHHhcCcHHHHHHHHHH----
Confidence 3444554332245678899886666777763 1222 11 1 223455556666666655555555420000
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 177 PPRADVVKSLKNGIGVNLVGMGAAILGMQAT 207 (280)
Q Consensus 177 Pskadv~r~Lr~GL~vNLvGmlltllGaqA~ 207 (280)
.| +-...=+.-.+.+++++++.++|.-..
T Consensus 215 -~~-~~l~~g~it~ityvva~~l~iig~i~g 243 (344)
T PF04123_consen 215 -FR-ESLYEGRITFITYVVALLLIIIGIIYG 243 (344)
T ss_pred -hc-cccccceeehHHHHHHHHHHHHHHHHH
Confidence 00 111112566778888888887776433
No 72
>PRK11462 putative transporter; Provisional
Probab=30.62 E-value=5.2e+02 Score=25.23 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=7.4
Q ss_pred CchHHHHHHHH
Q 023598 78 QNDESEKAKLA 88 (280)
Q Consensus 78 ~~~~~~~~~~~ 88 (280)
++|+.||.++.
T Consensus 138 t~d~~eRt~l~ 148 (460)
T PRK11462 138 TNDPTQRISLQ 148 (460)
T ss_pred cCCHHHHHHHH
Confidence 36677877764
No 73
>PF13664 DUF4149: Domain of unknown function (DUF4149)
Probab=29.59 E-value=2.6e+02 Score=21.48 Aligned_cols=70 Identities=10% Similarity=0.026 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023598 95 ENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 95 ~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~ 168 (280)
+..++-.+++-+.=||++++++++..+...... +.......+.....++.+..+.+-.|.+.--..+++.
T Consensus 28 ~~ag~i~~~lFp~y~~~~~~~~~v~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~l~P~~~~l~~ 97 (101)
T PF13664_consen 28 QQAGKIQGKLFPKYFYLGLACAAVLLLTSLALH----KGSGNANRWQLLLLLVMLLLTLLNAFYLGPKMNALKD 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777788888888988888877655543 1222222333333455556677777777766666653
No 74
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=28.79 E-value=1.6e+02 Score=27.23 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHh--hcCCCCC-------chhHHHHHHHHHHHHHHHHHHHHH
Q 023598 114 VCTVVSAVILSFSII--ITGKVTS-------PTTFYCTAGGIAAAFISVFWSFGY 159 (280)
Q Consensus 114 VLGvVSaviLlFa~~--~~g~~~s-------p~~~~~t~~GLv~L~~SifwsfrY 159 (280)
+|++++++.+.-+++ +-|=|.. +.+++.+++..++.++.+||-||-
T Consensus 260 ~LTvvt~IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkr 314 (318)
T TIGR00383 260 ILTVVSTIFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRR 314 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667666655553 2355542 245666666666666667777764
No 75
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=28.34 E-value=2.5e+02 Score=22.37 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023598 145 GIAAAFISVFWSFGYIRLSE 164 (280)
Q Consensus 145 GLv~L~~SifwsfrYtRLar 164 (280)
+++.+ ++++.+|+..|-+|
T Consensus 49 a~~~l-~~~~~a~~~ar~~~ 67 (103)
T PF10067_consen 49 AVLWL-ITTFLAVRAARRGR 67 (103)
T ss_pred HHHHH-HHHHHHHHHHHhCC
Confidence 45554 88899999988544
No 76
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=27.77 E-value=5.6e+02 Score=24.73 Aligned_cols=67 Identities=18% Similarity=0.096 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 145 GIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSLKNG--IGVNLVGMGAAILGMQATVGLLVAKAL 216 (280)
Q Consensus 145 GLv~L~~SifwsfrYtRLarrLr~~~~~p~~rPskadv~r~Lr~G--L~vNLvGmlltllGaqA~VG~LvaKaL 216 (280)
.++.++.-.++.|+..|-+.+... + ...+..+..+.+... +.+-++=++++++||-.++..|..+..
T Consensus 163 ~ii~~~~l~~~~~~l~~~~~~~~~--~---~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yTA~~L~~~l~ 231 (340)
T PF12794_consen 163 FIILLLLLAVFLWRLLRPGWGLYQ--P---KPDSWIHRLRYLWWPLLILAPLALIVLALLGYYYTALQLLERLI 231 (340)
T ss_pred HHHHHHHHHHHHHHHHcccccccc--C---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344444556667777777776653 1 233444555444433 234455567778898877777665543
No 77
>PRK08238 hypothetical protein; Validated
Probab=27.69 E-value=1.9e+02 Score=29.47 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=23.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 023598 135 SPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPS 174 (280)
Q Consensus 135 sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~~~~~p~ 174 (280)
+|..+|.++ -+-+||-+||..++.+-.. .+||.
T Consensus 423 ~~~~l~~~~------p~~~~~i~R~~~l~~~~~~-~~dP~ 455 (479)
T PRK08238 423 HPQLLWLAC------PILLYWISRVWLLAHRGEM-HDDPV 455 (479)
T ss_pred CcHHHHHHH------HHHHHHHHHHHHHHHcccC-CCCce
Confidence 455577777 3557899999999987543 35554
No 78
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=27.61 E-value=3.5e+02 Score=22.26 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=34.0
Q ss_pred chHHHHHHHHHhhHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 023598 79 NDESEKAKLAQVSKRLENT-ARHFKRFGSFGFWGQLVCTVVSAVILSFSIII 129 (280)
Q Consensus 79 ~~~~~~~~~~~v~~~l~ri-A~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~ 129 (280)
.++.|.+|.++..++.++. -+..+..+|...+.+.+..+..++++.++...
T Consensus 198 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 249 (275)
T PF00664_consen 198 AEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIVLILIFGAYL 249 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777664444 34556677788888887777666777776543
No 79
>PRK15038 autoinducer 2 import system permease LsrD; Provisional
Probab=26.96 E-value=80 Score=30.24 Aligned_cols=26 Identities=4% Similarity=0.103 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCC
Q 023598 148 AAFISVFWSFGYIRLSEKLRKTASDP 173 (280)
Q Consensus 148 ~L~~SifwsfrYtRLarrLr~~~~~p 173 (280)
++++-.||..+|||.||+++.-.+||
T Consensus 172 ~~~~~~~~~l~~T~~Gr~l~AiG~N~ 197 (330)
T PRK15038 172 ICLLVFWLLMHRTHAGRNVFLIGQSP 197 (330)
T ss_pred HHHHHHHHHHhhChhhheeeEEcCCH
Confidence 33455677789999999999755553
No 80
>PF00528 BPD_transp_1: Binding-protein-dependent transport system inner membrane component; InterPro: IPR000515 Bacterial binding protein-dependent transport systems [, ] are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown [, ] that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems [] to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices, however they can be classified into seven families which have been respectively termed: araH, cysTW, fecCD, hisMQ, livHM, malFG and oppBC.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2ONK_H 3PUX_G 3PUY_G 2R6G_G 3PV0_G 3RLF_G 3PUW_G 3PUV_G 3PUZ_G 3TUI_E ....
Probab=26.42 E-value=3.4e+02 Score=21.78 Aligned_cols=46 Identities=24% Similarity=0.152 Sum_probs=28.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHH
Q 023598 82 SEKAKLAQVSKRLENTARHFKRFGSFGFW----GQLVCTVVSAVILSFSI 127 (280)
Q Consensus 82 ~~~~~~~~v~~~l~riA~~lRr~GWIgFW----iQLVLGvVSaviLlFa~ 127 (280)
.-++.+++++++..+.|+.+.--.|--|| =++.=+++++.++.|..
T Consensus 71 ~~~~~~~~i~~~~~eaa~~~G~s~~~~~~~v~lP~~~p~i~~~~~~~~~~ 120 (185)
T PF00528_consen 71 IIYNALRSIPKEYIEAARILGASRWQIFRKVILPNIKPGILSAFILSFAS 120 (185)
T ss_dssp HHHHHHCCS-THHHHHHHHTTS-HHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHhcCCCCCccceeeHHHHHHHHHHHHHHHHHH
Confidence 34556667788888888888877777777 24444555555555554
No 81
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=26.27 E-value=2.7e+02 Score=20.62 Aligned_cols=57 Identities=16% Similarity=0.429 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHh---------hcCCCCC--chhHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 023598 110 WGQLVCTVVSAVILSFSII---------ITGKVTS--PTTFYCTAGGIAAAFISVFWSFGYI-RLSEKL 166 (280)
Q Consensus 110 WiQLVLGvVSaviLlFa~~---------~~g~~~s--p~~~~~t~~GLv~L~~SifwsfrYt-RLarrL 166 (280)
|.=++|++|..++-.+-.. ..++... +...+..+..+.+.++.+||.|++. |+.+..
T Consensus 4 ~~~ilLsiiT~GIY~l~W~y~~~~~~~~~~~~~~~~~~~~~~lll~ilt~gi~~i~w~~k~~~~i~~~~ 72 (75)
T PF14018_consen 4 LKVILLSIITCGIYGLYWLYKIWKELNQLTGRIISPRSMTLWLLLSILTCGIYSIYWAYKLGNRINEEA 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445577776665444332 1244422 2334444445556667778877764 343433
No 82
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=26.02 E-value=4.7e+02 Score=23.28 Aligned_cols=16 Identities=6% Similarity=0.372 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 023598 111 GQLVCTVVSAVILSFS 126 (280)
Q Consensus 111 iQLVLGvVSaviLlFa 126 (280)
.+.+.+.+.++++++.
T Consensus 57 ~E~l~~l~~~~~l~~~ 72 (268)
T TIGR01297 57 AEILAALLNGLFLVVV 72 (268)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3666666666655554
No 83
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=25.95 E-value=1.8e+02 Score=28.08 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHh--hcCCCCC-------chhHHHHHHHHHHHHHHHHHHHHH
Q 023598 114 VCTVVSAVILSFSII--ITGKVTS-------PTTFYCTAGGIAAAFISVFWSFGY 159 (280)
Q Consensus 114 VLGvVSaviLlFa~~--~~g~~~s-------p~~~~~t~~GLv~L~~SifwsfrY 159 (280)
+|++++++.+.-.++ +-|-|.. +..++.+++.++++++..||-||.
T Consensus 258 ~lTv~s~if~pptliagiyGMNf~~mP~~~~~~g~~~~l~~~~~~~~~~~~~f~r 312 (316)
T PRK11085 258 IFSVVSVVFLPPTLVASSYGMNFEFMPELKWSFGYPGAIILMILAGLAPYLYFKR 312 (316)
T ss_pred HHHHHHHHHHHHHHHHhhcccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666665554443 2355543 235666665666666666766654
No 84
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=25.93 E-value=6.9e+02 Score=25.14 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 023598 104 FGSFGFWGQLVCTVVSAVI 122 (280)
Q Consensus 104 ~GWIgFWiQLVLGvVSavi 122 (280)
+.++.+|+|...+..+.+.
T Consensus 83 ~~~~~~W~~~~~~~~~~~~ 101 (507)
T TIGR00910 83 AAIFFGWFQIAIGFIPMIY 101 (507)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334568888777766543
No 85
>PRK11275 pstC phosphate transporter permease subunit PstC; Provisional
Probab=25.74 E-value=6e+02 Score=24.36 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH----HHHHHHHHHHHHHHHHHh---------hcCCC-C----C---ch-
Q 023598 80 DESEKAKLAQVSKRLENTARHFKRFGSFGFW----GQLVCTVVSAVILSFSII---------ITGKV-T----S---PT- 137 (280)
Q Consensus 80 ~~~~~~~~~~v~~~l~riA~~lRr~GWIgFW----iQLVLGvVSaviLlFa~~---------~~g~~-~----s---p~- 137 (280)
-|.-++.++++++..++.|..+----|=-|| =|.-=|+++++++.|+.. ..|.. . + |.
T Consensus 186 ~~~~~~al~~V~~~~~EAA~aLGas~~q~~~~VilP~a~pgi~s~~~l~f~ra~gE~~~~~~~~G~~~~~~~~~~~~~~~ 265 (319)
T PRK11275 186 AAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGVMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGN 265 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCccccCCcc
Confidence 5677889999999999999999888887776 367778999999999863 11221 0 0 10
Q ss_pred ----------------hHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023598 138 ----------------TFY--CTAGGIAAAFISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 138 ----------------~~~--~t~~GLv~L~~SifwsfrYtRLarrLr~ 168 (280)
..+ +...|++++.++....+-..++.||.++
T Consensus 266 tlt~~I~~~~~~~~~~~~~~al~~~~lvLl~i~~~~~~~~~~i~~r~~~ 314 (319)
T PRK11275 266 SITSALANEFAEAESGLHTAALMELGLILFVITFIVLAASKLMIMRLAK 314 (319)
T ss_pred hHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 1224677777888888877788887754
No 86
>PRK09546 zntB zinc transporter; Reviewed
Probab=25.37 E-value=1.8e+02 Score=27.35 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHh--hcCCCCC-------chhHHHHHHHHHHHHHHHHHHHHH
Q 023598 114 VCTVVSAVILSFSII--ITGKVTS-------PTTFYCTAGGIAAAFISVFWSFGY 159 (280)
Q Consensus 114 VLGvVSaviLlFa~~--~~g~~~s-------p~~~~~t~~GLv~L~~SifwsfrY 159 (280)
+|++++++.+-.+++ +-|-|.. +.++|.+++..+++++.++|-||.
T Consensus 266 ~Ltilt~IflPlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~i~~~~~~~fkr 320 (324)
T PRK09546 266 TMSLMAMVFLPTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVVLIGGVAWWLKR 320 (324)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 466666655444433 3455543 345777776666666677776664
No 87
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=25.31 E-value=5.8e+02 Score=24.08 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=18.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 023598 98 ARHFKRFGSFGFWGQLVCTVVSAVILSFS 126 (280)
Q Consensus 98 A~~lRr~GWIgFWiQLVLGvVSaviLlFa 126 (280)
-+=+|.++++|+.+ .++|++.++.+++.
T Consensus 228 ~~Plr~~~~~g~~~-~~~~~~~~~~~~~~ 255 (325)
T PRK10714 228 TTPLRLLSLLGSII-AIGGFSLAVLLVVL 255 (325)
T ss_pred hhhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34568999999887 44665555544443
No 88
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.22 E-value=1.9e+02 Score=27.46 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHh--hcCCCCC--c-----hhHHHHHHHHHHHHHHHHHHHHH
Q 023598 115 CTVVSAVILSFSII--ITGKVTS--P-----TTFYCTAGGIAAAFISVFWSFGY 159 (280)
Q Consensus 115 LGvVSaviLlFa~~--~~g~~~s--p-----~~~~~t~~GLv~L~~SifwsfrY 159 (280)
|+++|++.+--+++ +-|=|.. | .++|.+++..+++++..||-||-
T Consensus 265 LTi~s~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~m~~~~~~~~~~frr 318 (322)
T COG0598 265 LTIVSTIFLPPTLITGFYGMNFKGMPELDWPYGYPIALILMLLLALLLYLYFRR 318 (322)
T ss_pred HHHHHHHHHhhHHHHcccccCCCCCcCCCCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 45555554444433 2355553 2 34677776666666666666653
No 89
>PF10306 FLILHELTA: Hypothetical protein FLILHELTA; InterPro: IPR018811 This entry represents a family of conserved proteins found in fungi. They contain a characteristic FL(I)LHE(L)TA sequence motif, where the bracketed residues are I, L or V. Their function is not known.
Probab=25.21 E-value=43 Score=26.93 Aligned_cols=20 Identities=35% Similarity=0.663 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHhhhhHHH
Q 023598 90 VSKRLENTARHFKRFGSFGF 109 (280)
Q Consensus 90 v~~~l~riA~~lRr~GWIgF 109 (280)
+.+-.+++.+.+++.||.+|
T Consensus 63 ~~~g~~~~~r~~~k~G~~~~ 82 (86)
T PF10306_consen 63 LDEGTERFERWFRKKGWFGF 82 (86)
T ss_pred HHHHHHHHHHHHHHcCCccc
Confidence 44556899999999999987
No 90
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=25.10 E-value=1.8e+02 Score=26.65 Aligned_cols=23 Identities=4% Similarity=-0.006 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Q 023598 95 ENTARHFKRFGSFGFWGQLVCTV 117 (280)
Q Consensus 95 ~riA~~lRr~GWIgFWiQLVLGv 117 (280)
..+.-.+|.+||+--|+-+.+-+
T Consensus 180 ~~~tW~lR~~G~llmf~G~~~~~ 202 (248)
T PF07787_consen 180 NTLTWILRFIGWLLMFIGFFLLF 202 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445688899988888755444
No 91
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.06 E-value=6.7e+02 Score=28.77 Aligned_cols=67 Identities=15% Similarity=0.018 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 023598 136 PTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVV-KSLKNGIGVNLVGMGAAILGM 204 (280)
Q Consensus 136 p~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~~~~~p~~rPskadv~-r~Lr~GL~vNLvGmlltllGa 204 (280)
+.++.-.+.++++++++.+..-...++-++.-. ......|.-...+ +.++.++++=.+-+.+..+|.
T Consensus 830 ~itl~~ll~AllIliv~~~l~r~l~~lle~~l~--~~~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI 897 (1109)
T PRK10929 830 PITLGSVLIAILVFIITTQLVRNLPALLELALL--QHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGI 897 (1109)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444555555566665555544444444443221 1111233333333 455555544333344444443
No 92
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=24.80 E-value=3.7e+02 Score=24.48 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023598 91 SKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 91 ~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~ 168 (280)
..-.-|+...+|.-.-.|.|-+++.|+++.+.=+--. .+ |..--.++ ++++...-+++.+-|...|=++|+
T Consensus 113 ~~GI~ri~~~~~~~~~~G~~w~ii~Gvl~ii~g~ill--~~----P~~~~~~l-~~llGI~li~~G~~~i~~a~~~rk 183 (185)
T COG3247 113 ASGILRIVVAFRLRSLPGWWWMIISGVLGIIAGLILL--FN----PVASAWIL-GLLLGIELIFQGIALIAFALLIRK 183 (185)
T ss_pred HHHHHHHHHHHHccccCCcHHHHHHHHHHHHHHHHHH--Hc----cHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3345567777777777799999999999866221111 11 33322333 566667778888888888888864
No 93
>PHA03231 glycoprotein BALF4; Provisional
Probab=24.34 E-value=2.1e+02 Score=31.71 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 91 SKRLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKV---TSPTTFYCTAGGIAAAFISVFWSFGYIRLSE 164 (280)
Q Consensus 91 ~~~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~---~sp~~~~~t~~GLv~L~~SifwsfrYtRLar 164 (280)
+.-++.++.-|.-+|=+| |.|--+|+++.=+|+-+++|=. ..|.+-++++.-+++..+-+|+.|||++-.+
T Consensus 658 ~~~~~gl~~~~~gLG~vG---k~vg~vv~~v~ga~~SiVsG~~sFl~NPFGg~~iillvia~vv~v~l~~rr~~~~~ 731 (829)
T PHA03231 658 NAFVRGLAEFMQGLGAVG---KAVGNVVSGVAGAVGSIVSGVISFLKNPFGGLAIGLLVIAVLVAVFLAYRRVRRLR 731 (829)
T ss_pred hHHHHHHHHHHhhhhhhc---hhhhhhhhhHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 344777777787777776 5555555555555554434332 2454434444345555567889999987544
No 94
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=24.32 E-value=5.3e+02 Score=23.22 Aligned_cols=52 Identities=23% Similarity=0.400 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC----Cc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 108 GFWGQLVCTVVSAVILSFSIIITGKVT----SP-TTFYCTAGGIAAAFISVFWSFGYIRL 162 (280)
Q Consensus 108 gFWiQLVLGvVSaviLlFa~~~~g~~~----sp-~~~~~t~~GLv~L~~SifwsfrYtRL 162 (280)
.++.=++.|++..+..+.+.. .|+.. ++ ..- .++++++.+++++.-+.+.|-
T Consensus 29 ~~~~~l~ig~~~~~~~~lg~~-~G~~~~~~i~~~~~~--~ig~~iLi~iG~~mi~~~~~~ 85 (206)
T TIGR02840 29 PFLSNLIIAVISGLFIFISML-LGKFLAKFLPPKVTE--ILGAFILIAIGIWIIYNAFRP 85 (206)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhchhhHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 455555666666655554442 12211 11 122 344566667787777777653
No 95
>COG5416 Uncharacterized integral membrane protein [Function unknown]
Probab=23.80 E-value=3.5e+02 Score=22.57 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023598 141 CTAGGIAAAFISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 141 ~t~~GLv~L~~SifwsfrYtRLarrLr~ 168 (280)
...++|++.+.++...++|.|-.||+++
T Consensus 69 ~v~G~Li~~~~~~~Ri~~lrr~~krlr~ 96 (98)
T COG5416 69 AVVGALIAMFAGIARILQLRREVKRLRA 96 (98)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 4456788888899999999999999985
No 96
>TIGR00780 ccoN cytochrome c oxidase, cbb3-type, subunit I. Gene symbols ccoN and fixN are synonymous.
Probab=23.31 E-value=5.2e+02 Score=26.48 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=16.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Q 023598 101 FKRFGSFGFWGQLVCTVVSAVILSFS 126 (280)
Q Consensus 101 lRr~GWIgFWiQLVLGvVSaviLlFa 126 (280)
=++++.+.||+-.+=.++-..-+.++
T Consensus 376 s~~L~~~hFWl~~iG~~l~~~~l~~~ 401 (474)
T TIGR00780 376 STRLVDFHFWIATIGIVLYFASMWIA 401 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788899999875444333334443
No 97
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=23.17 E-value=2e+02 Score=23.41 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 110 WGQLVCTVVSAVILSFSIIITGKVTS---PTTFYCTAGGIAAAFISVFWSFGYIRLSEKL 166 (280)
Q Consensus 110 WiQLVLGvVSaviLlFa~~~~g~~~s---p~~~~~t~~GLv~L~~SifwsfrYtRLarrL 166 (280)
++|.++-+++.+.+++-.....+..- ...+|..+ +++++++++|= ---.++|+.+
T Consensus 3 ~~qii~i~~~v~~~~~ii~~vr~~~l~~~~~l~Wl~~-~i~~l~~~ifP-~~~~~vA~~l 60 (115)
T PF10066_consen 3 ILQIILIIIAVLFLLFIIRLVRKRKLRLKYSLLWLVF-SIILLILSIFP-NILDWVAKLL 60 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH-HHHHHHHHhhh-hHHHHHHHHH
Confidence 58988777777766655432222221 23366655 56666666654 3334566665
No 98
>TIGR03226 PhnU 2-aminoethylphosphonate ABC transporter, permease protein. This ABC transporter permease (membrane-spanning) component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238).
Probab=23.06 E-value=5.6e+02 Score=23.94 Aligned_cols=46 Identities=24% Similarity=0.209 Sum_probs=34.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHH
Q 023598 82 SEKAKLAQVSKRLENTARHFKRFGSFGFWG----QLVCTVVSAVILSFSI 127 (280)
Q Consensus 82 ~~~~~~~~v~~~l~riA~~lRr~GWIgFWi----QLVLGvVSaviLlFa~ 127 (280)
.=++.+.++++++++.|+.+---.|=-||- |+.=+++++.++.|..
T Consensus 198 ~~~~~l~~i~~~~~EAA~~lGas~~~~~~~IiLP~~~p~i~~~~~l~f~~ 247 (312)
T TIGR03226 198 PLLAAFAQIDKRLLEAASILGAHGLMLAGQVIFPAALPAIAAGGILCFLL 247 (312)
T ss_pred HHHHHHHhCChHHHHHHHHcCCChhhhhhheehhccHHHHHHHHHHHHHH
Confidence 345778899999999999998888877773 3334667777777654
No 99
>PF14143 YrhC: YrhC-like protein
Probab=22.92 E-value=3.8e+02 Score=21.05 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023598 93 RLENTARHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPT-TFYCTAGGIAAAFISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 93 ~l~riA~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~-~~~~t~~GLv~L~~SifwsfrYtRLarrLr~ 168 (280)
+++.....+||.|- ||-.||+- |-++.+.-+...++. ..+...+-.+.+..+.|+..|-.+.-|||..
T Consensus 2 ~l~~Ki~DyKrf~~-------vLLAvs~F-lYiG~viP~~~~~~~~~~~m~~~~~~~l~~a~~f~~rs~~~~~~L~E 70 (72)
T PF14143_consen 2 ELKEKIEDYKRFAF-------VLLAVSTF-LYIGTVIPIGAKETAQKYIMMGAICIFLAGAFLFFRRSKKYQKKLEE 70 (72)
T ss_pred cHHHHHHHHHHHHH-------HHHHHHHH-HHHHhhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45666677788763 34444443 233332222222222 2333333345555777777777788888763
No 100
>COG0700 SpmB Uncharacterized membrane protein [Function unknown]
Probab=22.27 E-value=1.2e+02 Score=27.27 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 180 ADVVKSLKNGIGVNLVGMGAAILGMQATVG 209 (280)
Q Consensus 180 adv~r~Lr~GL~vNLvGmlltllGaqA~VG 209 (280)
.++.+.++-|++++++|.+.++.-+|...|
T Consensus 133 k~~~~al~~~l~advig~i~ai~V~~l~f~ 162 (162)
T COG0700 133 KKIRKALPVGLTADVIGAIAAIWVMQLFFG 162 (162)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467788999999999999999999887654
No 101
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.06 E-value=1e+02 Score=25.57 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 023598 151 ISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 151 ~SifwsfrYtRLarrLr~ 168 (280)
+-+++.+.+.+-.||.|+
T Consensus 12 i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 12 ILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 444444444455555554
No 102
>PRK11301 livM leucine/isoleucine/valine transporter permease subunit; Provisional
Probab=22.02 E-value=2e+02 Score=28.81 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhccCCCC
Q 023598 157 FGYIRLSEKLRKTASDP 173 (280)
Q Consensus 157 frYtRLarrLr~~~~~p 173 (280)
.+++|+||+++.-.+|+
T Consensus 282 L~rT~~Gr~l~Ai~en~ 298 (419)
T PRK11301 282 LLRMPLGRAWEALREDE 298 (419)
T ss_pred HhhChHhHHHhHHhcCH
Confidence 47899999999755553
No 103
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=21.90 E-value=3.9e+02 Score=24.11 Aligned_cols=18 Identities=11% Similarity=0.061 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023598 140 YCTAGGIAAAFISVFWSF 157 (280)
Q Consensus 140 ~~t~~GLv~L~~Sifwsf 157 (280)
+..+.++.....+++..+
T Consensus 235 ~~~~~~~~~~~~~~~~g~ 252 (377)
T PRK11102 235 YFALNIVFLFVMTIINSR 252 (377)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444434444443
No 104
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=21.86 E-value=3.7e+02 Score=20.50 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=17.6
Q ss_pred HHHHHhhHHHHHHHHHHHhhhhHHHH
Q 023598 85 AKLAQVSKRLENTARHFKRFGSFGFW 110 (280)
Q Consensus 85 ~~~~~v~~~l~riA~~lRr~GWIgFW 110 (280)
++|.+-+..+++-|+.+||--|..-|
T Consensus 41 ~~L~~~a~~F~k~a~~l~r~~~~~~~ 66 (89)
T PF00957_consen 41 EELSDNAKQFKKNAKKLKRKMWWRNY 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666777778888888777664433
No 105
>PRK10995 inner membrane protein; Provisional
Probab=21.68 E-value=6.1e+02 Score=22.95 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023598 189 GIGVNLVGMGAAILGMQATVGLL 211 (280)
Q Consensus 189 GL~vNLvGmlltllGaqA~VG~L 211 (280)
-++-=+.|++++.+|.|.++--+
T Consensus 191 ~ii~Ri~GliL~aiavq~i~~Gi 213 (221)
T PRK10995 191 EAISRLMGFLLVCMGVQFIINGI 213 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455789999999999877554
No 106
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=21.67 E-value=7.3e+02 Score=23.88 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023598 139 FYCTAGGIAAAFISVFWSFGYIRLSEKLRKT 169 (280)
Q Consensus 139 ~~~t~~GLv~L~~SifwsfrYtRLarrLr~~ 169 (280)
++.++.++++. .-|=-+|+++++.
T Consensus 87 lfs~v~~~IAa-------pFng~lAEkvE~~ 110 (250)
T COG2981 87 LFSTVANLIAA-------PFNGLLAEKVEKR 110 (250)
T ss_pred HHHHHHHHHHh-------hhhhHHHHHHHHH
Confidence 35556566554 2345577877764
No 107
>PF06300 Tsp45I: Tsp45I type II restriction enzyme; InterPro: IPR010443 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents type II restriction endonucleases such as Tsp45I, which recognises the DNA sequence 5' GTSAC, cleaving prior to G-1 [].
Probab=21.35 E-value=83 Score=30.11 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHhhhhH
Q 023598 81 ESEKAKLAQVSKRLENTARHFKRFGSF 107 (280)
Q Consensus 81 ~~~~~~~~~v~~~l~riA~~lRr~GWI 107 (280)
..||++++.-|..+.|++..++.|||=
T Consensus 77 krdksAlernP~Ti~ri~g~l~emGl~ 103 (261)
T PF06300_consen 77 KRDKSALERNPETINRICGRLYEMGLD 103 (261)
T ss_pred HhhHHHHhcCcHHHHHHHHHHHHHhHH
Confidence 478999999999999999999999973
No 108
>PF04103 CD20: CD20-like family; InterPro: IPR007237 This family includes the CD20 protein and the beta subunit of the high affinity receptor for IgE Fc. The high affinity receptor for IgE is a tetrameric structure consisting of a single IgE-binding alpha subunit, a single beta subunit, and two disulphide-linked gamma subunits. The alpha subunit of Fc epsilon RI and most Fc receptors are homologous members of the Ig superfamily. By contrast, the beta and gamma subunits from Fc epsilon RI are not homologous to the Ig superfamily. Both molecules have four putative transmembrane segments and a probably topology where both amino- and carboxy termini protrude into the cytoplasm []. This family also includes LR8 like proteins from humans, mice and rats. The function of the human LR8 protein is unknown although it is known to be strongly expressed in the lung fibroblasts []. This family also includes sarcospan is a transmembrane component of dystrophin-associated glycoprotein. Loss of the sarcoglycan complex and sarcospan alone is sufficient to cause muscular dystrophy. The role of the sarcoglycan complex and sarcospan is thought to be to strengthen the dystrophin axis connecting the basement membrane with the cytoskeleton []. ; GO: 0016021 integral to membrane; PDB: 2OSL_Q 3BKY_P 3PP4_P.
Probab=21.21 E-value=32 Score=27.79 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023598 183 VKSLKNGIGVNLVGMGAAILGMQ 205 (280)
Q Consensus 183 ~r~Lr~GL~vNLvGmlltllGaq 205 (280)
...++..+..|++++++++.|.-
T Consensus 57 ~~lv~~~l~lsi~s~~~a~~~i~ 79 (150)
T PF04103_consen 57 KCLVIASLVLSIVSALLALAGII 79 (150)
T ss_dssp -----------------------
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 34577888899999988886653
No 109
>COG1300 SpoIIM Uncharacterized membrane protein [Function unknown]
Probab=21.21 E-value=6.4e+02 Score=23.04 Aligned_cols=104 Identities=17% Similarity=0.128 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCC--------c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 104 FGSFGFWGQLVCTVVSAVILSFSIIITGK--------VTS--------P-TTFYCTAGGIAAAFISVFWSFGYIRLSEKL 166 (280)
Q Consensus 104 ~GWIgFWiQLVLGvVSaviLlFa~~~~g~--------~~s--------p-~~~~~t~~GLv~L~~SifwsfrYtRLarrL 166 (280)
..-..|=.=+++|+-...+++|+-..-|- ... | +.+-..+ -+++..+++.++++-.|-++.-
T Consensus 83 vall~~~g~~~lGl~~il~l~fNG~ivG~~~~~~~~~~~~~~~~~~vLPHGi~EIPA-iiiAga~G~~~~~~li~~~~~~ 161 (207)
T COG1300 83 VALLAIAGGLTLGLPTILVLLFNGFIVGFFVGLVAQKGGLFLFLLLVLPHGILEIPA-IIIAGAAGLRLGYYLIRPGFGK 161 (207)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHhcccHHHHHHHHhccchHHHHH-HHHHHHHHHHHHHHHHHhhccc
Confidence 33444445678888888888888521111 110 1 1122333 4667778899999888877765
Q ss_pred hccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023598 167 RKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALT 217 (280)
Q Consensus 167 r~~~~~p~~rPskadv~r~Lr~GL~vNLvGmlltllGaqA~VG~LvaKaLs 217 (280)
+. + +.| +..+..+. +.+..+-+++-.-..|+.+.-++++.+.
T Consensus 162 ~~---~----~~~-~~~~~~~~-l~~~~i~ll~iAaliE~~iTp~i~~~~~ 203 (207)
T COG1300 162 RG---E----ALK-EAGRGSVS-LLAGVIVLLLIAALIEAYITPLIAGALK 203 (207)
T ss_pred hh---H----HHH-HHHHHHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 53 1 122 22222222 6666666666666777777777766653
No 110
>PTZ00207 hypothetical protein; Provisional
Probab=21.17 E-value=6.9e+02 Score=26.28 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=17.7
Q ss_pred HHhhHHHHHHHHHHHh--hhhHHHHHHHHHHHHHH
Q 023598 88 AQVSKRLENTARHFKR--FGSFGFWGQLVCTVVSA 120 (280)
Q Consensus 88 ~~v~~~l~riA~~lRr--~GWIgFWiQLVLGvVSa 120 (280)
+.++..-++-.+.+|| +-..++|+|...|..-.
T Consensus 11 ~~~~~~~~~~~~e~~Rw~~lva~~~~~~~~g~~y~ 45 (591)
T PTZ00207 11 ERLSTANQKPINEPRRFALLVLGAFCSICTSFMYA 45 (591)
T ss_pred hcccccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3343333333333443 44578899987776543
No 111
>PRK11122 artM arginine transporter permease subunit ArtM; Provisional
Probab=20.59 E-value=5.8e+02 Score=22.35 Aligned_cols=90 Identities=10% Similarity=0.007 Sum_probs=54.6
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHH------------HHhhcCC----CC
Q 023598 78 QNDESEKAKLAQVSKRLENTARHFKRFGSFGFWGQLVCTVVSAV-------ILSF------------SIIITGK----VT 134 (280)
Q Consensus 78 ~~~~~~~~~~~~v~~~l~riA~~lRr~GWIgFWiQLVLGvVSav-------iLlF------------a~~~~g~----~~ 134 (280)
-..|.=|+.+.++++...+.|+.+---.|=.||+.+=..+..++ +.++ .....++ ..
T Consensus 105 ~~~~i~~~~l~~i~~~~~eaA~a~G~s~~q~~~I~lP~~l~~~l~~~~~~~i~~~k~~~~~~~i~v~~~~~~~~~~~~~~ 184 (222)
T PRK11122 105 YSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLRILLPYAFKRALSSYSNEVVLVFKSTSLAYTITLMDVMGYSQLLYGRT 184 (222)
T ss_pred HHHHHHHHHHhcCCHhHHHHHHHcCCCHhHhhhhhHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567788899999999999998888888877765322221111 1111 1100111 01
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023598 135 SPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRK 168 (280)
Q Consensus 135 sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~ 168 (280)
.+.. +....+++.+.++...++-|.++-||+++
T Consensus 185 ~~~~-~~~~~a~i~~ii~~~~~~~~~~l~~r~~~ 217 (222)
T PRK11122 185 YDVM-VFGAAGIIYLVVNGLLTLLMRLIERKALA 217 (222)
T ss_pred ccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1222 44445677777888888889999988863
No 112
>PF13347 MFS_2: MFS/sugar transport protein
Probab=20.49 E-value=1.8e+02 Score=27.53 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=39.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 023598 99 RHFKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPP 178 (280)
Q Consensus 99 ~~lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~~~~~p~~rPs 178 (280)
+.++++-...|=.++..++.......|..-.-+... ....+..+..+..+..+.+ ..+++||+.+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~----~~~l~~r~gk---------- 289 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPL----WGRLSKRFGK---------- 289 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHH----HHHHHHHccc----------
Confidence 556666666666666666655554444432233331 1122222222333333333 3677777742
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 023598 179 RADVVKSLKNGIGVNLVGMGAAI 201 (280)
Q Consensus 179 kadv~r~Lr~GL~vNLvGmlltl 201 (280)
.+....|.++-.+|+++..
T Consensus 290 ----~~~~~~~~~~~~~~~~~~~ 308 (428)
T PF13347_consen 290 ----KKVYIIGLLLAALGFLLLF 308 (428)
T ss_pred ----eeehhhhHHHHHHHHHHHH
Confidence 1124556666666555544
No 113
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=20.43 E-value=9.1e+02 Score=24.54 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=14.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023598 98 ARHFKRFGSFGFWGQLVCTVVSAVILSFSI 127 (280)
Q Consensus 98 A~~lRr~GWIgFWiQLVLGvVSaviLlFa~ 127 (280)
....||..|| |.=.++-.....+..|+.
T Consensus 44 ~~G~rRtPyI--~~G~~~~~~g~~~ap~a~ 71 (403)
T PF03209_consen 44 ILGWRRTPYI--WGGTLLQAGGLAIAPFAL 71 (403)
T ss_pred cCcCCchhhh--HHHHHHHHHHHHHHHHHH
Confidence 3456888887 444433333344444554
No 114
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=20.07 E-value=8.6e+02 Score=24.08 Aligned_cols=102 Identities=22% Similarity=0.197 Sum_probs=56.6
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChH
Q 023598 102 KRFGSFGFWGQLVCTVVSAVILS-FSIIITGKVTSPTTFYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRA 180 (280)
Q Consensus 102 Rr~GWIgFWiQLVLGvVSaviLl-Fa~~~~g~~~sp~~~~~t~~GLv~L~~SifwsfrYtRLarrLr~~~~~p~~rPska 180 (280)
+|+||-=|+==+.+++++.+.-. |.-+.-.........-..+++++.+ ...+.++| +.| .-...
T Consensus 87 ~rlGnklFiPal~i~v~a~~~a~~~~~l~l~d~~~~tlv~lgig~i~Al----i~a~~itk---------~~~--~~~~~ 151 (308)
T PF06166_consen 87 KRLGNKLFIPALLIPVVAVIGAQLFTKLPLLDPKNGTLVGLGIGAIVAL----IVALIITK---------PKP--KQPLK 151 (308)
T ss_pred HHhcCeehHHHHHHHHHHHHHHHHhccccccCCCcchHHHHHHHHHHHH----HHHHHHhC---------CCh--hhhhH
Confidence 57888889999999988876444 2221000000111122222233333 33333332 112 22346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhc
Q 023598 181 DVVKSLKNGIGVNLVGMGAAILGM---QATVGLLVAKALTT 218 (280)
Q Consensus 181 dv~r~Lr~GL~vNLvGmlltllGa---qA~VG~LvaKaLsq 218 (280)
|..|.+..-=+..++=.+++.+|+ .|=||..+++..+.
T Consensus 152 e~~Rll~~vG~a~iLPQlLAaLG~vF~~AGVG~vIa~lv~~ 192 (308)
T PF06166_consen 152 ESRRLLDQVGWAAILPQLLAALGAVFTAAGVGDVIASLVSS 192 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhcCccHHHHHHHHh
Confidence 778888777777777777777775 35577777777764
Done!