Query 023598
Match_columns 280
No_of_seqs 102 out of 115
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 09:34:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ev6_A Magnesium transport pro 32.4 60 0.002 29.3 5.3 45 114-158 281-334 (339)
2 3hd7_A Vesicle-associated memb 31.2 1.7E+02 0.0058 22.1 7.2 39 86-124 44-83 (91)
3 3lbw_A M2 protein; proton chan 22.2 87 0.003 18.9 2.9 19 248-266 3-22 (23)
4 2bg9_C Acetylcholine receptor 22.1 1.2E+02 0.0041 27.8 5.4 24 101-124 224-253 (369)
5 2iub_A CORA, divalent cation t 21.6 68 0.0023 29.3 3.7 45 114-158 305-358 (363)
6 3bkd_A Transmembrane domain of 20.7 94 0.0032 19.2 2.9 17 250-266 8-25 (26)
7 2bg9_A Acetylcholine receptor 18.6 1.3E+02 0.0044 27.5 4.9 24 101-124 225-254 (370)
8 1hx1_B BAG-1, BAG-family molec 17.6 1.1E+02 0.0037 25.0 3.5 29 76-104 2-30 (114)
9 2bg9_B Acetylcholine receptor 17.2 1.3E+02 0.0044 27.6 4.5 24 101-124 222-251 (370)
10 3tx3_A Uncharacterized protein 15.5 5.4E+02 0.019 22.6 8.0 17 153-169 99-115 (249)
No 1
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=32.42 E-value=60 Score=29.33 Aligned_cols=45 Identities=20% Similarity=0.289 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHh--hcCCCCC-------chhHHHHHHHHHHHHHHHHHHHH
Q 023598 114 VCTVVSAVILSFSII--ITGKVTS-------PTTFYCTAGGIAAAFISVFWSFG 158 (280)
Q Consensus 114 VLGvVSaviLlFa~~--~~g~~~s-------p~~~~~t~~GLv~L~~Sifwsfr 158 (280)
+|++++++.+--+++ +.|-|.. +.++|.+++..++.++.+||.||
T Consensus 281 ~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~~~fk 334 (339)
T 4ev6_A 281 ILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFVYIFR 334 (339)
T ss_dssp HHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 466666664433332 3455542 34578777666776677777665
No 2
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=31.17 E-value=1.7e+02 Score=22.08 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=24.1
Q ss_pred HHHHhhHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHHHH
Q 023598 86 KLAQVSKRLENTARHFKRFGSFG-FWGQLVCTVVSAVILS 124 (280)
Q Consensus 86 ~~~~v~~~l~riA~~lRr~GWIg-FWiQLVLGvVSaviLl 124 (280)
.|.+-+++.++-|+.+||-=|.- +-.-+++|+|.+++++
T Consensus 44 ~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 44 ALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677788888887765543 3334666666655443
No 3
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=22.18 E-value=87 Score=18.87 Aligned_cols=19 Identities=16% Similarity=0.349 Sum_probs=13.8
Q ss_pred HHHHHHHHHHH-HHHHHHHh
Q 023598 248 TILSHFLGLLF-SLELLRSV 266 (280)
Q Consensus 248 tI~AHFvGLv~-SLWLL~rv 266 (280)
++.|..+|+.- -||.++|+
T Consensus 3 v~aa~iigIlHLiLwIlDrL 22 (23)
T 3lbw_A 3 VVAASIIAILHLILWILDRL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred ehhHHHHHHHHHHHHHHhhc
Confidence 45677777764 57999986
No 4
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=22.12 E-value=1.2e+02 Score=27.78 Aligned_cols=24 Identities=4% Similarity=0.193 Sum_probs=16.9
Q ss_pred HHhhhhHHHHHH------HHHHHHHHHHHH
Q 023598 101 FKRFGSFGFWGQ------LVCTVVSAVILS 124 (280)
Q Consensus 101 lRr~GWIgFWiQ------LVLGvVSaviLl 124 (280)
+--+.|++||+. +.||+...+.+.
T Consensus 224 iv~ls~~sF~lp~~~~~Rv~lgit~lLt~t 253 (369)
T 2bg9_C 224 ISFLAALAFYLPAESGEKMSTAICVLLAQA 253 (369)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhheEEecCCCCCeEEEEhHHHHHHH
Confidence 556899999997 567766655433
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=21.61 E-value=68 Score=29.29 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHh--hcCCCCC-------chhHHHHHHHHHHHHHHHHHHHH
Q 023598 114 VCTVVSAVILSFSII--ITGKVTS-------PTTFYCTAGGIAAAFISVFWSFG 158 (280)
Q Consensus 114 VLGvVSaviLlFa~~--~~g~~~s-------p~~~~~t~~GLv~L~~Sifwsfr 158 (280)
+|++++++.+--+++ +.|-|.. +.++|.+++..+++++.+||-||
T Consensus 305 ~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fk 358 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFK 358 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777776665554 2354542 33466666666666667776665
No 6
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=20.72 E-value=94 Score=19.20 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=10.6
Q ss_pred HHHHHHHHH-HHHHHHHh
Q 023598 250 LSHFLGLLF-SLELLRSV 266 (280)
Q Consensus 250 ~AHFvGLv~-SLWLL~rv 266 (280)
.|..+|+.- -||.++|+
T Consensus 8 aa~iiGilHLiLwIldrl 25 (26)
T 3bkd_A 8 AASIMGILHLILWILDRL 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 444455543 47999885
No 7
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=18.64 E-value=1.3e+02 Score=27.49 Aligned_cols=24 Identities=13% Similarity=0.240 Sum_probs=17.1
Q ss_pred HHhhhhHHHHHH------HHHHHHHHHHHH
Q 023598 101 FKRFGSFGFWGQ------LVCTVVSAVILS 124 (280)
Q Consensus 101 lRr~GWIgFWiQ------LVLGvVSaviLl 124 (280)
+--+.|++||+- +.||+...+.+.
T Consensus 225 iv~ls~~sF~lp~~~~~Rv~lgit~lLt~t 254 (370)
T 2bg9_A 225 FSFLTVLVFYLPTDSGEKMTLSISVLLSLT 254 (370)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHheecCCCCCCeEEEeHHHHHHHH
Confidence 456899999996 667766655443
No 8
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=17.57 E-value=1.1e+02 Score=24.99 Aligned_cols=29 Identities=28% Similarity=0.428 Sum_probs=24.9
Q ss_pred CCCchHHHHHHHHHhhHHHHHHHHHHHhh
Q 023598 76 TSQNDESEKAKLAQVSKRLENTARHFKRF 104 (280)
Q Consensus 76 ~~~~~~~~~~~~~~v~~~l~riA~~lRr~ 104 (280)
.++++|.|..+|.++-+.++.+++.|-.+
T Consensus 2 ~~peeE~~lK~L~~veksv~~~~kkl~~~ 30 (114)
T 1hx1_B 2 NSPQEEVELKKLKHLEKSVEKIADQLEEL 30 (114)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999887654
No 9
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=17.19 E-value=1.3e+02 Score=27.59 Aligned_cols=24 Identities=8% Similarity=0.209 Sum_probs=17.0
Q ss_pred HHhhhhHHHHHH------HHHHHHHHHHHH
Q 023598 101 FKRFGSFGFWGQ------LVCTVVSAVILS 124 (280)
Q Consensus 101 lRr~GWIgFWiQ------LVLGvVSaviLl 124 (280)
+--+.|++||+- +.||+...+.+.
T Consensus 222 iv~ls~~sFwlp~~~~~Rv~lgit~lLt~t 251 (370)
T 2bg9_B 222 ISILAILVFYLPPDAGEKMSLSISALLALT 251 (370)
T ss_dssp HHHHHHHHHHSTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhheEEccCCCCceEEEEehHHHHHH
Confidence 556899999985 677776655443
No 10
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=15.52 E-value=5.4e+02 Score=22.62 Aligned_cols=17 Identities=18% Similarity=-0.035 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhcc
Q 023598 153 VFWSFGYIRLSEKLRKT 169 (280)
Q Consensus 153 ifwsfrYtRLarrLr~~ 169 (280)
+.-+.-|-.+++|.++.
T Consensus 99 ~IaapF~~~LAE~VE~~ 115 (249)
T 3tx3_A 99 LIAAPFNGLLAEKVERY 115 (249)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 45567788999997653
Done!