Query 023598
Match_columns 280
No_of_seqs 102 out of 115
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 09:34:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023598.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023598hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1oedc_ f.36.1.1 (C:) Acetylch 34.3 29 0.0021 27.3 5.4 22 101-122 15-42 (260)
2 d1oeda_ f.36.1.1 (A:) Acetylch 29.2 52 0.0038 25.6 6.2 24 101-124 15-44 (227)
3 d1oede_ f.36.1.1 (E:) Acetylch 28.1 46 0.0034 26.2 5.7 23 102-124 16-45 (260)
4 d2iuba2 f.17.3.1 (A:286-349) M 18.0 59 0.0043 21.1 3.7 44 115-158 9-61 (64)
5 d1ffta_ f.24.1.1 (A:) Cytochro 17.5 3.2E+02 0.024 24.2 10.8 107 101-217 87-209 (501)
6 d2oara1 f.16.1.1 (A:10-118) Ga 16.8 64 0.0047 23.7 4.0 46 139-186 63-108 (109)
7 d1pw4a_ f.38.1.1 (A:) Glycerol 16.3 2.3E+02 0.017 22.0 12.2 31 135-165 59-89 (447)
8 d1ivsa1 a.2.7.3 (A:797-862) Va 15.4 66 0.0048 21.0 3.4 27 79-105 40-66 (66)
9 d1llda2 d.162.1.1 (A:150-319) 13.8 52 0.0038 24.5 2.8 25 79-106 146-170 (170)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 12.1 84 0.0061 21.8 3.3 61 98-159 11-84 (91)
No 1
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=34.33 E-value=29 Score=27.33 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=14.7
Q ss_pred HHhhhhHHHHHH------HHHHHHHHHH
Q 023598 101 FKRFGSFGFWGQ------LVCTVVSAVI 122 (280)
Q Consensus 101 lRr~GWIgFWiQ------LVLGvVSavi 122 (280)
+-.+.|++||+. +.||+...+.
T Consensus 15 ~~~l~~~~f~lp~~~~~r~~l~it~lLs 42 (260)
T d1oedc_ 15 ISFLASLAFYLPAESGEKMSTAISVLLA 42 (260)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHeeeCCCCCCcEEeeHHHHHH
Confidence 445789999993 5566655443
No 2
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=29.19 E-value=52 Score=25.56 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=16.6
Q ss_pred HHhhhhHHHHHH------HHHHHHHHHHHH
Q 023598 101 FKRFGSFGFWGQ------LVCTVVSAVILS 124 (280)
Q Consensus 101 lRr~GWIgFWiQ------LVLGvVSaviLl 124 (280)
+--+.|++||+- +.||+...+.+.
T Consensus 15 i~~ls~~~F~lp~~s~eRi~l~it~lL~~~ 44 (227)
T d1oeda_ 15 FSFLTGLVFYLPTDSGEKMTLSISVLLSLT 44 (227)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHheecCCCCccEEeeHHHHHHHH
Confidence 345789999995 667766655444
No 3
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=28.09 E-value=46 Score=26.19 Aligned_cols=23 Identities=0% Similarity=-0.002 Sum_probs=15.5
Q ss_pred HhhhhHHHHHH-------HHHHHHHHHHHH
Q 023598 102 KRFGSFGFWGQ-------LVCTVVSAVILS 124 (280)
Q Consensus 102 Rr~GWIgFWiQ-------LVLGvVSaviLl 124 (280)
--+.|++||+- +.||+...+.+.
T Consensus 16 ~~ls~~~F~lp~~~~g~Rv~l~it~lLs~~ 45 (260)
T d1oede_ 16 SSLVVLVYFLPAQAGGQKCTLSISVLLAQT 45 (260)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHheEecCCCCCCcEEeehhHHHHHH
Confidence 35789999984 456666655444
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=17.96 E-value=59 Score=21.09 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHh--hcCCCCC-------chhHHHHHHHHHHHHHHHHHHHH
Q 023598 115 CTVVSAVILSFSII--ITGKVTS-------PTTFYCTAGGIAAAFISVFWSFG 158 (280)
Q Consensus 115 LGvVSaviLlFa~~--~~g~~~s-------p~~~~~t~~GLv~L~~Sifwsfr 158 (280)
|++++++.+-.+++ +.|-|.. +..+|.+++..+++++.++|-||
T Consensus 9 lT~it~iflP~t~i~gifGMN~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~f~ 61 (64)
T d2iuba2 9 LTIIATIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFK 61 (64)
T ss_dssp HHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777776665553 2243321 33466666555555555555443
No 5
>d1ffta_ f.24.1.1 (A:) Cytochrome O ubiquinol oxidase, subunit I {Escherichia coli [TaxId: 562]}
Probab=17.53 E-value=3.2e+02 Score=24.24 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=52.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--------------c-hhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 023598 101 FKRFGSFGFWGQLVCTVVSAVILSFSIIITGKVTS--------------P-TTFYCTAGGIAAAFISV-FWSFGYIRLSE 164 (280)
Q Consensus 101 lRr~GWIgFWiQLVLGvVSaviLlFa~~~~g~~~s--------------p-~~~~~t~~GLv~L~~Si-fwsfrYtRLar 164 (280)
+.|+-|++||+..+-.++ +..+....+.... + ...=..+.|+.+++++. .-+.-+...-.
T Consensus 87 fPrln~~sfWl~~~~~~l----~~~s~~~~~~~~~gwt~y~pl~~~~~~~~~~~~l~i~gl~l~gissil~~in~i~Ti~ 162 (501)
T d1ffta_ 87 FPFLNNLSFWFTVVGVIL----VNVSLGVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTIL 162 (501)
T ss_dssp SHHHHHHHHHHHHHHHHH----HHHHHTTTCCCCSTTTTCTTTSSCSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHH----hhhcccccccccccccccccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 669999999987543332 3333221111110 1 11112233555555554 34445555556
Q ss_pred HHhccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023598 165 KLRKTASDPSKAPPRADVVKSLKNGIGVNLVGMGAAILGMQATVGLLVAKALT 217 (280)
Q Consensus 165 rLr~~~~~p~~rPskadv~r~Lr~GL~vNLvGmlltllGaqA~VG~LvaKaLs 217 (280)
++|+ ++ -+..++.=..+..++.+++-++...+-+-+..-.++-+.+.
T Consensus 163 ~~R~--~g----m~~~~~PLf~w~~~~t~il~~la~pvla~~~~~llld~~~g 209 (501)
T d1ffta_ 163 KMRA--PG----MTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLG 209 (501)
T ss_dssp HCSC--TT----CCGGGCCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HhcC--CC----CChhhccchhheeeeeeeeHhhHHHHHHHHHHHhhcccccC
Confidence 6663 22 12233444455555555554444444455666667777764
No 6
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.78 E-value=64 Score=23.72 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCChHHHHHHH
Q 023598 139 FYCTAGGIAAAFISVFWSFGYIRLSEKLRKTASDPSKAPPRADVVKSL 186 (280)
Q Consensus 139 ~~~t~~GLv~L~~SifwsfrYtRLarrLr~~~~~p~~rPskadv~r~L 186 (280)
|..++.-+++..+.+||.. ++--+++++...++...|+..+.++-+
T Consensus 63 fi~a~InFlIiA~vv~F~v--vk~~n~~~~k~~~~~~~p~e~~LL~EI 108 (109)
T d2oara1 63 LLSAAINFFLIAFAVYFLV--VLPYNTLRKKGEVEQPGDTQVVLLTEI 108 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHT--HHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHhhcCCCCCCCCcHHHHHHhh
Confidence 5545545555556676653 444555665333333333333444443
No 7
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=16.28 E-value=2.3e+02 Score=21.97 Aligned_cols=31 Identities=16% Similarity=0.034 Sum_probs=17.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023598 135 SPTTFYCTAGGIAAAFISVFWSFGYIRLSEK 165 (280)
Q Consensus 135 sp~~~~~t~~GLv~L~~SifwsfrYtRLarr 165 (280)
+......++..+...+.+.++++-.-|.|||
T Consensus 59 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r 89 (447)
T d1pw4a_ 59 GDLGFALSGISIAYGFSKFIMGSVSDRSNPR 89 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3444555555566565666666655555554
No 8
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=15.43 E-value=66 Score=20.96 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.8
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHhhh
Q 023598 79 NDESEKAKLAQVSKRLENTARHFKRFG 105 (280)
Q Consensus 79 ~~~~~~~~~~~v~~~l~riA~~lRr~G 105 (280)
--|.||.++++.-.+++++-..+.++|
T Consensus 40 Vv~~~k~kl~~~~~~~~~l~~~l~~Lg 66 (66)
T d1ivsa1 40 VVEAEEARLKENLEQAERIREALSQIG 66 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 467899999999999999999988876
No 9
>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}
Probab=13.78 E-value=52 Score=24.54 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=18.5
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHhhhh
Q 023598 79 NDESEKAKLAQVSKRLENTARHFKRFGS 106 (280)
Q Consensus 79 ~~~~~~~~~~~v~~~l~riA~~lRr~GW 106 (280)
=+|.||++|.+-.+.|++ ..+.+||
T Consensus 146 L~~~E~~~l~~sa~~lk~---~~~~lg~ 170 (170)
T d1llda2 146 VSDKELAALKRSAETLKE---TAAQFGF 170 (170)
T ss_dssp CCHHHHHHHHHHHHHHHH---HHHTTTC
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHhCc
Confidence 466788999888887775 5666665
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=12.06 E-value=84 Score=21.81 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=36.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh-hcCCCC----Cc--------hhHHHHHHHHHHHHHHHHHHHHH
Q 023598 98 ARHFKRFGSFGFWGQLVCTVVSAVILSFSII-ITGKVT----SP--------TTFYCTAGGIAAAFISVFWSFGY 159 (280)
Q Consensus 98 A~~lRr~GWIgFWiQLVLGvVSaviLlFa~~-~~g~~~----sp--------~~~~~t~~GLv~L~~SifwsfrY 159 (280)
|+....+=|..||+=+++.++..+++++... +..+.. .+ ...|.++-.++++++.+ .+|+.
T Consensus 11 a~~i~~L~~~~~~i~~iv~v~V~~~~~~~~~ryR~~~~~~~~~~~~~~n~~lEi~WtiIP~iil~~iav-~s~~~ 84 (91)
T d1fftb2 11 GLEQRSLILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIFLAV-LTWKT 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTTTTTHHHHHHHTTTTTTTTSTTTCSSCCCCCCCSHHHHHTTHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeccCCccCCCCcccCCceehhhHHHHHHHHHHHHHH-HHHHH
Confidence 4455667789999999888887776666653 121111 11 12677776566555543 46654
Done!