BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023600
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W6I0|UQCC_XENLA Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
OS=Xenopus laevis GN=uqcc PE=2 SV=1
Length = 200
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 106 IYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIY 165
+Y V ++D ++ +L T F + LH+W CL R+K+EG+ G + +Y+
Sbjct: 21 MYTCCVERIDYDEFFEKCSLPDTLNSWFLVTQLHVWMCLVRMKQEGRAGKYMCRYIVHSM 80
Query: 166 NHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSD 224
DVE R G++ + L M+ + +IFY I +D ++ + + L +WRN+
Sbjct: 81 WEDVEQRGKVMGIDSVTLKNSMRSMTEIFYAAIFGYDEGIISDDRI--LAAALWRNLL-- 136
Query: 225 DGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKE-AMFSGNFMFTPL 270
+ + DD R ++ + YVR++V L D E + +G ++ PL
Sbjct: 137 --NKQCDDP--RKLELLVEYVRKQVQFLDTLDGEDLLLTGEVVWRPL 179
>sp|Q9NVA1|UQCC_HUMAN Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
OS=Homo sapiens GN=UQCC PE=1 SV=3
Length = 299
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 100/216 (46%), Gaps = 22/216 (10%)
Query: 64 LALALDSPLRVDEPKYEGIKRF--ILKLMLF-----YSKQSKSIRGANVIYKRVVSQVDK 116
L+ DSP +P E + F I++ M F YSK I A +Y V + D
Sbjct: 76 LSTTKDSP----QPVEEKVGAFTKIIEAMGFTGPLKYSKWKIKI-AALRMYTSCVEKTDF 130
Query: 117 PAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKA 176
+ + TF F + +LH+W CL R+K+EG+ G + + + DV+ R
Sbjct: 131 EEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMWEDVQQRGRVM 190
Query: 177 GVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 235
GVN +L K M + FY I+ +D +L + L +WR F + K +D
Sbjct: 191 GVNPYILKKNMILMTNHFYAAILGYDEGIL--SDDHGLAAALWRTFF----NRKCEDP-- 242
Query: 236 RAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFTPL 270
R ++ + YVR+++ L S+ ++ + +G + PL
Sbjct: 243 RHLELLVEYVRKQIQYLDSMNGEDLLLTGEVSWRPL 278
>sp|Q9CWU6|UQCC_MOUSE Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
OS=Mus musculus GN=Uqcc PE=2 SV=1
Length = 295
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEE 150
L YSK I A +Y V + D + + TF F + +LH+W CL R+K+E
Sbjct: 102 LKYSKWKIKI-AALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 160
Query: 151 GKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
G+ G + + + DVE R GVN +L K M + FY I+ +D +L +
Sbjct: 161 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEGILSD-- 218
Query: 210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCL-SLTDKEAMFSGNFMFT 268
L +WR F + K +D R ++ + YVR+++ L S+ ++ + +G +
Sbjct: 219 DHGLAAALWRTFF----NQKCEDP--RQLELLVEYVRKQMQYLDSMNGEDLLLTGEVRWR 272
Query: 269 PL 270
PL
Sbjct: 273 PL 274
>sp|P21560|CBP3_YEAST Protein CBP3, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CBP3 PE=1 SV=1
Length = 335
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 119 IYDVFNLEKTFRMTFSLLVLHMWFCLRRLKE-EGKEGVELGQYLYEIYNHDVEMRV---S 174
Y+ L +TF F + VLH W R++ K G Q L + D+E+R+
Sbjct: 143 FYEDLKLPRTFSQWFQITVLHEWILFVRMRAMPFKYGRNYQQKLVDRTFSDIELRLFEEM 202
Query: 175 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234
K + +++K+ G I A+D + L +WRN+F G K D
Sbjct: 203 KVNSGRIADQYLKDFNTQLRGAIFAYDEGFATD--DGTLATAVWRNLF---GGRKNIDMV 257
Query: 235 VRAVQAMTRYVRREVSCLS-LTDKEAMFSGNFMFTP 269
++++ RY+ ++ LS L+D+E +G F F P
Sbjct: 258 --HLESVVRYIYSQLYVLSRLSDRE-FATGKFKFVP 290
>sp|Q9USK6|CBP3_SCHPO CBP3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cbp3 PE=3 SV=1
Length = 283
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 120 YDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGK-EGVELGQYLYEIYNHDVEMRVSK--- 175
Y + TF+ F + LH+W R++ K E V Q L + D+E+R+ K
Sbjct: 127 YQKCEIPMTFQSWFQITQLHLWILHTRIRGLPKNEKVAFSQALTTRFFEDMELRIHKDYR 186
Query: 176 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 235
N + ++K+L + G I +D +L L +WRN+F +PD V
Sbjct: 187 INSNRISGMYLKDLFQQQTGAIFGYDQGML--GSDAVLATSVWRNLF----VGRPDVDLV 240
Query: 236 RAVQAMTRYVRREV---SCLSLTD 256
++ + +++R V SCLS D
Sbjct: 241 -ILETIVKFIRLNVYRLSCLSTDD 263
>sp|O26803|GATE_METTH Glutamyl-tRNA(Gln) amidotransferase subunit E
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=gatE PE=1 SV=1
Length = 619
Score = 31.2 bits (69), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 35 AAASVEPAPRPTKQPVVSLDKMFWSK-PAS--LALALDSPL-RVDEPKYEGIKRFILKLM 90
A +++ P T++ + + + P S + L D PL R+++ EGI+R + +L
Sbjct: 388 AEMAIQGVPEETRKALPDGNTQYLRPLPTSSRMYLETDIPLFRIEDDLLEGIRRNLPEL- 446
Query: 91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEE 150
S++ + I + + + SQ+ K + D F FR+ +++ + + LR L+ E
Sbjct: 447 --PSEKKERIMRDYGLSEDLASQLVKRNLVDEFEALTEFRVDTTVIASLLAYTLRELRRE 504
Query: 151 GKEGVELG 158
G + LG
Sbjct: 505 GHDVDGLG 512
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,633,060
Number of Sequences: 539616
Number of extensions: 3791305
Number of successful extensions: 10083
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 10077
Number of HSP's gapped (non-prelim): 9
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)