Query 023600
Match_columns 280
No_of_seqs 131 out of 305
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:15:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2873 Ubiquinol cytochrome c 100.0 3.8E-53 8.2E-58 385.4 16.8 257 2-271 1-276 (284)
2 COG5452 Uncharacterized conser 100.0 3.4E-42 7.3E-47 292.0 18.0 175 90-272 3-179 (180)
3 PF03981 Ubiq_cyt_C_chap: Ubiq 100.0 2.2E-38 4.8E-43 264.4 16.3 140 121-267 1-141 (141)
4 PF10660 MitoNEET_N: Iron-cont 44.6 7.3 0.00016 29.2 0.0 22 116-137 12-33 (64)
5 PF11711 Tim54: Inner membrane 36.5 37 0.0008 33.7 3.5 43 73-115 287-329 (382)
6 PF01152 Bac_globin: Bacterial 30.7 1.6E+02 0.0036 23.2 5.9 67 118-197 48-117 (120)
7 KOG2412 Nuclear-export-signal 25.0 2.2E+02 0.0048 29.8 6.7 150 50-221 423-583 (591)
8 PF10923 DUF2791: P-loop Domai 22.9 4.4E+02 0.0096 26.5 8.4 64 159-224 121-200 (416)
9 PF15652 Tox-SHH: HNH/Endo VII 21.4 1.6E+02 0.0036 23.9 4.1 38 154-193 61-99 (100)
10 PF09850 DUF2077: Uncharacteri 21.2 5.4E+02 0.012 22.2 7.9 60 140-206 10-71 (206)
11 PF10440 WIYLD: Ubiquitin-bind 21.0 1.4E+02 0.003 22.4 3.4 43 171-218 16-59 (65)
12 PHA03364 hypothetical protein; 20.8 3.5E+02 0.0077 25.6 6.8 78 155-267 72-151 (264)
No 1
>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]
Probab=100.00 E-value=3.8e-53 Score=385.42 Aligned_cols=257 Identities=41% Similarity=0.667 Sum_probs=217.2
Q ss_pred chhHHHhhhhhccccccchhhhhhhhHHHHHHhhhcccCC----CC----------CCCC-CCccccccccccCCccccc
Q 023600 2 LPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEP----AP----------RPTK-QPVVSLDKMFWSKPASLAL 66 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~----------~~~~-~~~~~~~~~~~~~p~s~~~ 66 (280)
++|.+|.+....++.+ +.+...+......+.-+ |.++| .| +++. +=.+++++++|++|||++.
T Consensus 1 Ms~~~~v~~~~~~~~~-tp~~s~~~y~~~t~~~~-~~p~~~l~~spc~~~~~~pV~e~q~~~l~~~~d~~k~~~P~~~~~ 78 (284)
T KOG2873|consen 1 MSRLRRVLRLTPKLRR-TPVGSMKIYSHFTRYFG-ASPSPLLNSSPCECSGLTPVFEPQNLPLSVNLDSMKWSPPCSLAA 78 (284)
T ss_pred CchhHHhhccCcceee-ccccccccccccccccc-CCChhhhccCccccccCCcccccccccccccccccccCCCcchhh
Confidence 3678888888888888 66666555444444422 22210 01 0000 2235889999999999999
Q ss_pred cCCCCCCCCCCchhhHHHHHHHHhhhhccCchhhhhHHHHHHHHHHhcCChhhhhhcCCCCchhhHHHHHHHHHHHHHHH
Q 023600 67 ALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRR 146 (280)
Q Consensus 67 ~~~s~~~~~e~~~~g~~~~i~kl~gf~sk~s~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~R 146 (280)
..+++.++-||...|+++++....-+|...+. +.++|..|+++.+.+.||++|+|||||++||++|+||+|||++|
T Consensus 79 ~~~~~~ri~~~d~~gf~~~~~~~s~~y~~~~a----s~~~y~~~~~~~df~~fy~~f~Lp~TF~sWf~iT~LH~W~ll~R 154 (284)
T KOG2873|consen 79 KGGLPLRIDEPDKVGFRRFILTGSMKYKIQSA----SIQIYKDCIAQVDFEAFYEDFNLPDTFSSWFQITVLHVWLLLMR 154 (284)
T ss_pred ccCceeeeccccccceeeccchhHHHHHHHHH----HHHHHhhhhhhccHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888776665444 45699999999999999999999999999999999999999999
Q ss_pred hhhcCc-hhhHHHHHHHHHHHHHHHHHHHHhc-Cc-hhhHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHhcc
Q 023600 147 LKEEGK-EGVELGQYLYEIYNHDVEMRVSKAG-VN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFS 223 (280)
Q Consensus 147 Lr~eg~-~G~~l~Q~L~D~ff~DvE~rlRe~G-V~-~~v~K~mK~l~e~fyG~~~aYDeaL~~~d~d~~LA~ALwRNvf~ 223 (280)
+|+||. +|+.++|.|++.||+|||.|++++| || ...+++||+|.++|||+++|||||+.++ |..||.|||||+|+
T Consensus 155 l~~eg~~~g~~l~q~lv~~mw~DvelR~~k~gkvN~~r~~~~mk~l~~qf~gaifaYDeG~l~d--D~vLA~alWRnlF~ 232 (284)
T KOG2873|consen 155 LKAEGQGEGVDLQQYLVERMWEDVELRLSKAGKVNSLRTKQYMKDLERQFYGAIFAYDEGFLSD--DRVLATALWRNLFS 232 (284)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHhC
Confidence 999997 8999999999999999999999999 99 5566699999999999999999999987 57999999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHhccCCCHhhhhccc-cccCCCC
Q 023600 224 DDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGN-FMFTPLE 271 (280)
Q Consensus 224 ~~~~~~pd~~~~~~l~~La~YVRr~l~~L~~~~~d~ll~G~-~~f~~~~ 271 (280)
++++ +|+.+++.+|+|||+|+..|+.+++++++.|. +.|-++.
T Consensus 233 ~r~~-----~D~~hle~vV~YvR~qv~~Ls~l~t~dfivg~~v~f~pl~ 276 (284)
T KOG2873|consen 233 GRGN-----VDLVHLEAVVRYVRSQVYSLSSLSTDDFIVGGPVLFVPLQ 276 (284)
T ss_pred CCCC-----cCHHHHHHHHHHHHHHHHHHhccChhhhhccCceeeccCC
Confidence 9863 46789999999999999999999998887555 9999985
No 2
>COG5452 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.4e-42 Score=292.02 Aligned_cols=175 Identities=26% Similarity=0.420 Sum_probs=161.4
Q ss_pred hhhhccCc-hhhhhHHHHHHHHHHhcCChhhhhhcCCCCchhhHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHHHH
Q 023600 90 MLFYSKQS-KSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHD 168 (280)
Q Consensus 90 ~gf~sk~s-~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~ff~D 168 (280)
++.|.|++ .+...+.++|..+|+++|+|.||.++|||||..|||+|+.|||.++++|+|.+|+.+.+++|+|+|.||.|
T Consensus 3 ~~lf~k~~~an~Ai~krlYa~~vaaARq~~fY~d~~VpDt~~GRfEmlSlh~il~~~R~kg~g~a~qeiaQei~Daff~d 82 (180)
T COG5452 3 LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLKGEGEAAQEIAQEIVDAFFKD 82 (180)
T ss_pred hHHhcCCCchhHHHHHHHHHHHHHHHhchhHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 45566777 45667788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHH
Q 023600 169 VEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRR 247 (280)
Q Consensus 169 vE~rlRe~GV~-~~v~K~mK~l~e~fyG~~~aYDeaL~~~d~d~~LA~ALwRNvf~~~~~~~pd~~~~~~l~~La~YVRr 247 (280)
+|+.+||+||+ ..|+|+||||..+||||+.+||.||...| ..+|++||-||++...++ ++....|+.||..
T Consensus 83 vDhs~RElGigD~gVpKrMKKlAgmFYGRl~aY~aAld~~d-~~alaaal~Rn~~pd~~~-------~p~a~~La~yv~~ 154 (180)
T COG5452 83 VDHSLRELGIGDQGVPKRMKKLAGMFYGRLEAYDAALDGND-ATALAAALARNIRPDVED-------WPEAAGLATYVLK 154 (180)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHhHHHHHHHHhcccc-hHHHHHHHHHhccccccc-------cchhHHHHHHHHH
Confidence 99999999998 99999999999999999999999998764 689999999999976543 4568999999999
Q ss_pred HHHhccCCCHhhhhccccccCCCCC
Q 023600 248 EVSCLSLTDKEAMFSGNFMFTPLEN 272 (280)
Q Consensus 248 ~l~~L~~~~~d~ll~G~~~f~~~~~ 272 (280)
.-.+|..+|+|.|.+|++.||.+.+
T Consensus 155 ~~~~Laaq~~eal~~G~~t~p~p~g 179 (180)
T COG5452 155 VRDALAAQPEEALATGDLTWPLPDG 179 (180)
T ss_pred HHHHHHcCcHHHHHhCceeecCCCC
Confidence 9999999999999999999997754
No 3
>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase. It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.
Probab=100.00 E-value=2.2e-38 Score=264.40 Aligned_cols=140 Identities=36% Similarity=0.642 Sum_probs=132.2
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHH
Q 023600 121 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVA 199 (280)
Q Consensus 121 ~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~ff~DvE~rlRe~GV~-~~v~K~mK~l~e~fyG~~~a 199 (280)
++||+||||++||+++.||+||+++|||+++++|+.+.|.|+|.||+|+|.+||++||+ ..++|+||+|.++|||++.+
T Consensus 1 ~~~~~~dt~~~~f~~~~lh~~l~~~RLk~~~~~~~~~~q~l~~~~~~d~~~~l~~~gv~d~~~~k~~k~l~~~~~g~~~a 80 (141)
T PF03981_consen 1 EHFGVPDTFAGRFQMLGLHVWLVLRRLKAEGKEGKELEQALFDKFFEDMDERLREMGVGDLSVGKRMKKLQEQFYGRLLA 80 (141)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999998899999999999999999999999997 88899999999999999999
Q ss_pred HHHhhCCCCChHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCCCHhhhhcccccc
Q 023600 200 FDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMF 267 (280)
Q Consensus 200 YDeaL~~~d~d~~LA~ALwRNvf~~~~~~~pd~~~~~~l~~La~YVRr~l~~L~~~~~d~ll~G~~~f 267 (280)
||+|+..+ +.+||+|||||+|++..+ .++++++.|+.|||+++.+|+.+|.+.++.|.+.|
T Consensus 81 yd~al~~~--~~~La~al~rnv~~~~~~-----~~~~~~~~l~~yv~~~~~~l~~~~~~~~~~g~~~~ 141 (141)
T PF03981_consen 81 YDEALGSD--DAALAAALWRNVFGGREE-----RDPAQLAGLAGYVRRQLWHLDDLPDPAYLVGIPRF 141 (141)
T ss_pred HHHHhccC--HHHHHHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHHHHCCCHHHHHhCCCCC
Confidence 99999873 799999999999998732 24679999999999999999999999999999988
No 4
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=44.64 E-value=7.3 Score=29.15 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=0.0
Q ss_pred ChhhhhhcCCCCchhhHHHHHH
Q 023600 116 KPAIYDVFNLEKTFRMTFSLLV 137 (280)
Q Consensus 116 ~p~fY~~~glpDTF~~rF~~~~ 137 (280)
=|.+.+.+-+||||.|||.+..
T Consensus 12 lP~YL~~lPiP~s~gg~f~Ls~ 33 (64)
T PF10660_consen 12 LPNYLKSLPIPDSFGGFFKLSV 33 (64)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccH
Confidence 3677788999999999998543
No 5
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=36.49 E-value=37 Score=33.66 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=37.0
Q ss_pred CCCCCchhhHHHHHHHHhhhhccCchhhhhHHHHHHHHHHhcC
Q 023600 73 RVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVD 115 (280)
Q Consensus 73 ~~~e~~~~g~~~~i~kl~gf~sk~s~~~r~a~~LY~~iv~qar 115 (280)
.+.-|+..|+..+-.+|..||.++......++..+..|.+++|
T Consensus 287 ~ipfp~llGF~n~P~RiyRFfnrR~~ad~~g~~~aaiVl~~~R 329 (382)
T PF11711_consen 287 PIPFPHLLGFLNTPRRIYRFFNRRYLADDIGEEVAAIVLAQTR 329 (382)
T ss_pred EecCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 4566678999999999999999999998989988888888744
No 6
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=30.75 E-value=1.6e+02 Score=23.17 Aligned_cols=67 Identities=7% Similarity=0.020 Sum_probs=42.5
Q ss_pred hhhhhcCCCCchhhHH---HHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Q 023600 118 AIYDVFNLEKTFRMTF---SLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFY 194 (280)
Q Consensus 118 ~fY~~~glpDTF~~rF---~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~l~e~fy 194 (280)
.|...+|=|..+.++. .|...|. +-.+...-||.+-..+...|.++||+....+.+....+.+.
T Consensus 48 fl~~~~GGp~~Y~~~~G~p~m~~~H~-------------~l~it~~~f~~~~~~~~~al~~~~v~~~~~~~~~~~~~~~~ 114 (120)
T PF01152_consen 48 FLSQLLGGPPLYTGRDGHPMMREAHA-------------HLGITEEHFDRWLELLKQALDELGVPEELIDELLARLESLR 114 (120)
T ss_dssp HHHHHTTSSSHHHHHHSSH-HHHHHT-------------TS-BBHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcccCCCchHHHHHh-------------CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4445666676666553 2444443 12355778999999999999999998544555555555555
Q ss_pred HHH
Q 023600 195 GNI 197 (280)
Q Consensus 195 G~~ 197 (280)
+.+
T Consensus 115 ~~i 117 (120)
T PF01152_consen 115 DDI 117 (120)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 7
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=24.97 E-value=2.2e+02 Score=29.78 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=79.7
Q ss_pred ccccccccccCCccccccCCCCCCCCCCchhhHHHHHHHHhhhhccCc----------hhhhhHHHHHHHHHHhcCChhh
Q 023600 50 VVSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQS----------KSIRGANVIYKRVVSQVDKPAI 119 (280)
Q Consensus 50 ~~~~~~~~~~~p~s~~~~~~s~~~~~e~~~~g~~~~i~kl~gf~sk~s----------~~~r~a~~LY~~iv~qar~p~f 119 (280)
.-+|--+..-|-|-...+---+.. ..--.++|||=...+ .+..+.-+||..|+- .+-|.
T Consensus 423 v~dlllA~l~KkCP~~VPf~~~~~---------~Eq~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAAIi~-l~~p~- 491 (591)
T KOG2412|consen 423 VGDLLLARLHKKCPYVVPFHIVNS---------TEQYQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAAIIQ-LDIPV- 491 (591)
T ss_pred HHHHHHHHHHhcCCccccccccCc---------HHHHHHhhcccccccccccccchHHHHhHhHHHHHHHHHH-hcccc-
Confidence 334444455555554444322221 223467888766656 334456799998773 33331
Q ss_pred hhhcCCCCchhhHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHHHHHHHHH-HHhcCchhhHHHHHHHHHHHHHHHH
Q 023600 120 YDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRV-SKAGVNLLLSKWMKELEKIFYGNIV 198 (280)
Q Consensus 120 Y~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~ff~DvE~rl-Re~GV~~~v~K~mK~l~e~fyG~~~ 198 (280)
|.+ .+|.-.=..|=|..+.|+......-. ..-.|...|+.-.-..+ +..|+. .-|-+--..+.|.++..
T Consensus 492 ----~~~---~~~hpf~i~~gW~wLA~iln~~p~~~-~tatll~s~Lq~aG~~L~q~Yg~Q--f~Klli~i~E~y~~r~~ 561 (591)
T KOG2412|consen 492 ----GNA---TNVHPFGINHGWAWLARILNKIPLLD-TTATLLNSFLQTAGFGLLQRYGSQ--FLKLLILIREHYLPRLA 561 (591)
T ss_pred ----cCC---CCCCcchhhcccHHHHHHhCCCCccc-hHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh
Confidence 111 23333446899999999988775433 44445555555443333 234542 11112223588899999
Q ss_pred HHHHhhCCCCChHHHHHHHHHHh
Q 023600 199 AFDAALLPEAKQDELQNVIWRNI 221 (280)
Q Consensus 199 aYDeaL~~~d~d~~LA~ALwRNv 221 (280)
||+++=..- ....|++.+=|++
T Consensus 562 a~~~~g~~r-l~ill~~~l~~q~ 583 (591)
T KOG2412|consen 562 AKKDTGDLR-LRILLEAWLDRQY 583 (591)
T ss_pred ccccccchH-HHHHHHHHHHhhh
Confidence 887653100 1245666665554
No 8
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=22.95 E-value=4.4e+02 Score=26.47 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhc-C----------chhhHHHHHHHHHH-----HHHHHHHHHHhhCCCCChHHHHHHHHHHhc
Q 023600 159 QYLYEIYNHDVEMRVSKAG-V----------NLLLSKWMKELEKI-----FYGNIVAFDAALLPEAKQDELQNVIWRNIF 222 (280)
Q Consensus 159 Q~L~D~ff~DvE~rlRe~G-V----------~~~v~K~mK~l~e~-----fyG~~~aYDeaL~~~d~d~~LA~ALwRNvf 222 (280)
..++|.++..++..+.+.| + ...+.+++..+.+. |--.+.+|=.|...+ |.+++++++|=+-
T Consensus 121 ~~ild~wi~~~~~~~~~~~~~~~~~~~~~~v~~~I~~~L~~l~~~~~~~~Fa~~l~~Y~~a~~~g--d~~~~~~~l~WL~ 198 (416)
T PF10923_consen 121 RSILDRWIYNLEEEVAAEGGIEPDEGFEEAVEELIEERLASLSELVHGPDFAAALRAYYRAYVEG--DEELADAALRWLR 198 (416)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHcccCChhHHHHHHHHHHHHhcC--CHHHHHHHHHHHc
Confidence 3455555555555555433 1 12445556666655 666777898888766 5899999999875
Q ss_pred cC
Q 023600 223 SD 224 (280)
Q Consensus 223 ~~ 224 (280)
+.
T Consensus 199 Ge 200 (416)
T PF10923_consen 199 GE 200 (416)
T ss_pred CC
Confidence 43
No 9
>PF15652 Tox-SHH: HNH/Endo VII superfamily toxin with a SHH signature
Probab=21.35 E-value=1.6e+02 Score=23.90 Aligned_cols=38 Identities=29% Similarity=0.272 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHH
Q 023600 154 GVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIF 193 (280)
Q Consensus 154 G~~l~Q~L~D~ff~DvE~rlRe~GV~-~~v~K~mK~l~e~f 193 (280)
|+ +...|=+.|..-.++ |.+.||+ ....|.+++..+.|
T Consensus 61 gk-w~t~~~~Ef~~~~~e-M~dAGV~~~~~~~~l~~~Ykyf 99 (100)
T PF15652_consen 61 GK-WSTTLQEEFNNSYRE-MFDAGVSKECRKKALKAQYKYF 99 (100)
T ss_pred CC-ccchHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHhhc
Confidence 44 777777777776666 6779998 77888888855443
No 10
>PF09850 DUF2077: Uncharacterized protein conserved in bacteria (DUF2077); InterPro: IPR017732 At least two distinct groups of proteins, often encoded by adjacent genes, show sequence similarity due to homology between type IV secretion systems and type VI secretion systems. One is the IcmF family (IPR017731 from INTERPRO). The other group is the DotU family, defined by this N-terminal domain, which includes DotU from the Legionella pneumophila type IV secretion system. Many of the proteins in this entry from type VI secretion systems have an additional C-terminal domain with OmpA/MotB homology IPR017733 from INTERPRO.; PDB: 4ACL_B 4ACK_B 3U66_A.
Probab=21.24 E-value=5.4e+02 Score=22.23 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=40.7
Q ss_pred HHHHHHHhhhcCc--hhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhCC
Q 023600 140 MWFCLRRLKEEGK--EGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLP 206 (280)
Q Consensus 140 vWLll~RLr~eg~--~G~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~l~e~fyG~~~aYDeaL~~ 206 (280)
++.+..+|+.... +...+.+.+.+ ..+.++.++.+.|+ .-..+....|-.|..-||.+..
T Consensus 10 ll~~~~~l~~~~~~~~~~~lr~~~~~-~l~~~~~~~~~~~~------~~~~~~~a~yalca~iDE~vl~ 71 (206)
T PF09850_consen 10 LLLLVLRLRQGSSPPDIEELRERLID-LLERFEQRLREAGY------SPEDIEDARYALCALIDEAVLN 71 (206)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCCCCCHHHHHHHHHH-HHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHHhc
Confidence 5677778887443 24455555554 56778888888888 3346677788888888998773
No 11
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=20.98 E-value=1.4e+02 Score=22.42 Aligned_cols=43 Identities=21% Similarity=0.329 Sum_probs=29.4
Q ss_pred HHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 023600 171 MRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIW 218 (280)
Q Consensus 171 ~rlRe~GV~-~~v~K~mK~l~e~fyG~~~aYDeaL~~~d~d~~LA~ALw 218 (280)
+.|+.+|+. ..|..-+++|.+.|-| |.-+..+|.=.+|++||.
T Consensus 16 dam~~lG~~~~~v~~vl~~LL~lY~~-----nW~lIEed~Y~~L~dai~ 59 (65)
T PF10440_consen 16 DAMRQLGFSKKQVRPVLKNLLKLYDG-----NWELIEEDNYRVLADAIF 59 (65)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcC-----CchhhhcccHHHHHHHHH
Confidence 457889998 7888889999887643 344444433356777763
No 12
>PHA03364 hypothetical protein; Provisional
Probab=20.81 E-value=3.5e+02 Score=25.63 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHhccCCCCCCCChhH
Q 023600 155 VELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234 (280)
Q Consensus 155 ~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~l~e~fyG~~~aYDeaL~~~d~d~~LA~ALwRNvf~~~~~~~pd~~~ 234 (280)
..++..+=+.||.-+=+.++++|++. ++|.+ +.=|++||-.+-..
T Consensus 72 ~VL~RKVP~eyW~~lYd~l~~~~~~~---------------------~~l~~----e~~aa~L~~~Ln~~---------- 116 (264)
T PHA03364 72 VVLGRKVPVEYWKLLYDALKEMGVSE---------------------EMLFS----ESRAAQLWLHLNSR---------- 116 (264)
T ss_pred eeecCCCCHHHHHHHHHHHHHhCCcH---------------------HhhcC----hhhHHHHHHHHhcC----------
Confidence 33444555667777777777777731 13432 46699999998643
Q ss_pred HHHHHHHHHHHHHHHHh--ccCCCHhhhhcccccc
Q 023600 235 VRAVQAMTRYVRREVSC--LSLTDKEAMFSGNFMF 267 (280)
Q Consensus 235 ~~~l~~La~YVRr~l~~--L~~~~~d~ll~G~~~f 267 (280)
+.-+..|..||++++.- .=.+|.+.+-.|++-|
T Consensus 117 ~~~~~~l~~~v~~~lGL~~~v~i~~~~l~DGN~LF 151 (264)
T PHA03364 117 PALLGGLCRFVFRELGLTHAVKIPPENLRDGNILF 151 (264)
T ss_pred hhHHHHHHHHHHHhcCCccCCCCChHHccccceEE
Confidence 23588999999999877 6678899999999876
Done!