Query 023600
Match_columns 280
No_of_seqs 131 out of 305
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:36:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u66_A SCIP/TSSL, putative typ 44.0 99 0.0034 26.0 8.3 66 135-207 11-78 (183)
2 2ksc_A Cyanoglobin; hemeprotei 26.1 1.3E+02 0.0044 22.9 5.7 58 118-185 49-106 (123)
3 2r25_A Phosphorelay intermedia 19.5 2.4E+02 0.0081 23.6 6.3 46 155-200 25-73 (167)
4 3us6_A Histidine-containing ph 14.6 3.4E+02 0.012 21.7 6.0 47 154-200 38-88 (153)
5 2bmm_A Thermostable hemoglobin 13.8 1.2E+02 0.0041 23.0 2.9 24 157-180 78-101 (123)
6 1yvi_A Histidine-containing ph 12.9 4.2E+02 0.014 20.8 6.1 46 155-200 40-89 (149)
7 1s69_A Cyanoglobin, hemoglobin 11.3 3.5E+02 0.012 20.2 4.9 23 157-179 79-101 (124)
8 4gnt_B Carbohydrate-responsive 11.0 1.2E+02 0.0041 17.7 1.5 13 211-223 4-16 (26)
9 1vej_A Riken cDNA 4931431F19; 10.5 1.7E+02 0.0057 21.3 2.6 14 82-95 29-44 (74)
10 3f7w_A Putative fructosamine-3 10.5 1.8E+02 0.0063 24.7 3.3 29 122-150 244-272 (288)
No 1
>3u66_A SCIP/TSSL, putative type VI secretion protein; duble helical bundle, protein secretion, attached to inner M unknown function; 2.63A {Escherichia coli}
Probab=43.98 E-value=99 Score=26.04 Aligned_cols=66 Identities=15% Similarity=0.290 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhhcCc--hhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHhhCCC
Q 023600 135 LLVLHMWFCLRRLKEEGK--EGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPE 207 (280)
Q Consensus 135 ~~~LHvWLll~RLr~eg~--~G~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~l~e~fyG~~~aYDeaL~~~ 207 (280)
.+..-.|++..+||.... ++..+.+.+. ...+++|..+++.|+. -..+...-|.-|...||++...
T Consensus 11 ~l~~~~l~lv~~Lr~~~~~~d~~~lr~~~~-~~i~~~e~~~~~~g~~------~~~i~~a~YalCa~lDE~vl~~ 78 (183)
T 3u66_A 11 QIFYPGWLMVSQLRSGQPVEDGKALYRRAC-QLVKQAREELAEAGFS------QKSSDIMLYAFCALLDESVLNR 78 (183)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHH-HHHHHHHHHHHHTTCC------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHHHHHHHHHHHCCCC------HHHHHHhHHHHHHHHHHHHhcC
Confidence 345678999999998763 4566766654 4567899999999995 2356778899999999998754
No 2
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=26.10 E-value=1.3e+02 Score=22.93 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=39.3
Q ss_pred hhhhhcCCCCchhhHHHHHHHHHHHHHHHhhhcCchhhHHHHHHHHHHHHHHHHHHHHhcCchhhHHH
Q 023600 118 AIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKW 185 (280)
Q Consensus 118 ~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~ 185 (280)
+|-..+|=|+++.++ .|-.-|.=+.- +..+...-||.+...+...|.+.|++......
T Consensus 49 Fl~~~~GGp~~Y~g~-~m~~~H~~~~~---------~~~I~~~~fd~wl~~~~~al~e~~~~~~~~~~ 106 (123)
T 2ksc_A 49 FMTYAFGGTDRFPGR-SMRAAHQDLVE---------NAGLTDVHFDAIAENLVLTLQELNVSQDLIDE 106 (123)
T ss_dssp HHHHHTTCTTSCCST-HHHHHHHHHHH---------HSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHhCCCCCCCCC-CHHHHHHhhcc---------cCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 555677778888886 44445552221 12366888999999999999999997433333
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=19.48 E-value=2.4e+02 Score=23.59 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCc---hhhHHHHHHHHHHHHHHHHHH
Q 023600 155 VELGQYLYEIYNHDVEMRVSKAGVN---LLLSKWMKELEKIFYGNIVAF 200 (280)
Q Consensus 155 ~~l~Q~L~D~ff~DvE~rlRe~GV~---~~v~K~mK~l~e~fyG~~~aY 200 (280)
..+.+.|+..|++|.+.++.++.-- ..=-+.+..+..++-|....+
T Consensus 25 p~Fv~elV~~F~edse~~l~~L~~AL~~~~D~~~L~~~aH~LKGSSAnL 73 (167)
T 2r25_A 25 SDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAAL 73 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHhcccCHHHHHHHHHhhhhhHHHH
Confidence 6799999999999999999875432 222367788888888887764
No 4
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=14.64 E-value=3.4e+02 Score=21.72 Aligned_cols=47 Identities=13% Similarity=0.051 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCchh----hHHHHHHHHHHHHHHHHHH
Q 023600 154 GVELGQYLYEIYNHDVEMRVSKAGVNLL----LSKWMKELEKIFYGNIVAF 200 (280)
Q Consensus 154 G~~l~Q~L~D~ff~DvE~rlRe~GV~~~----v~K~mK~l~e~fyG~~~aY 200 (280)
+..+.+.+++.|++|.+..+..+.-... =-+.+..+....-|....+
T Consensus 38 ~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~l 88 (153)
T 3us6_A 38 NPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKGSSASI 88 (153)
T ss_dssp BTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999987643211 1245666666666666543
No 5
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=13.76 E-value=1.2e+02 Score=22.98 Aligned_cols=24 Identities=8% Similarity=0.106 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCch
Q 023600 157 LGQYLYEIYNHDVEMRVSKAGVNL 180 (280)
Q Consensus 157 l~Q~L~D~ff~DvE~rlRe~GV~~ 180 (280)
+...-||.+...+...|.+.|++.
T Consensus 78 I~~~~f~~wl~~~~~al~e~~~~~ 101 (123)
T 2bmm_A 78 IGAEERDRWLTHMRAAVDDLALPA 101 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCCH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCH
Confidence 667888999999999999999863
No 6
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=12.92 E-value=4.2e+02 Score=20.80 Aligned_cols=46 Identities=4% Similarity=-0.004 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCc--hh--hHHHHHHHHHHHHHHHHHH
Q 023600 155 VELGQYLYEIYNHDVEMRVSKAGVN--LL--LSKWMKELEKIFYGNIVAF 200 (280)
Q Consensus 155 ~~l~Q~L~D~ff~DvE~rlRe~GV~--~~--v~K~mK~l~e~fyG~~~aY 200 (280)
..+...|++.|++|.+..+..+.-. .. =-+.++.+...+-|....+
T Consensus 40 ~~~~~elv~~Fl~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~LKGssa~l 89 (149)
T 1yvi_A 40 PGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKGSSASV 89 (149)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhHHHHH
Confidence 5789999999999999999876422 11 1345667777777766553
No 7
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=11.29 E-value=3.5e+02 Score=20.23 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Q 023600 157 LGQYLYEIYNHDVEMRVSKAGVN 179 (280)
Q Consensus 157 l~Q~L~D~ff~DvE~rlRe~GV~ 179 (280)
+..+-||.+-..+...|.+.|++
T Consensus 79 I~~~~f~~wl~~l~~al~e~~~~ 101 (124)
T 1s69_A 79 LNGEHFDAVAEDLLATLKEMGVP 101 (124)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHHHHcCCC
Confidence 56777888888899999988886
No 8
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=10.99 E-value=1.2e+02 Score=17.69 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhcc
Q 023600 211 DELQNVIWRNIFS 223 (280)
Q Consensus 211 ~~LA~ALwRNvf~ 223 (280)
-.|-.||||-.|-
T Consensus 4 irlnnaiwrawyi 16 (26)
T 4gnt_B 4 IRLNNAIWRAWYI 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHH
Confidence 4688999999874
No 9
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=10.50 E-value=1.7e+02 Score=21.27 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=7.4
Q ss_pred HHHHHHHH--hhhhcc
Q 023600 82 IKRFILKL--MLFYSK 95 (280)
Q Consensus 82 ~~~~i~kl--~gf~sk 95 (280)
....|-+| |||+.+
T Consensus 29 ye~qi~qL~eMGF~dr 44 (74)
T 1vej_A 29 YQQELEELKALGFANR 44 (74)
T ss_dssp SHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHcCCCcH
Confidence 34444444 787543
No 10
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=10.47 E-value=1.8e+02 Score=24.65 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=23.7
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHHhhhc
Q 023600 122 VFNLEKTFRMTFSLLVLHMWFCLRRLKEE 150 (280)
Q Consensus 122 ~~glpDTF~~rF~~~~LHvWLll~RLr~e 150 (280)
...+++.|..|..+..||-+|.+..|=..
T Consensus 244 ~~pl~~~~~~R~~ly~ly~~l~h~~~fg~ 272 (288)
T 3f7w_A 244 VAPLAEGWRARIPLHQLHPLLVHVCLFGA 272 (288)
T ss_dssp HSCCCTTHHHHHHHHHHHHHHHHHHHHCG
T ss_pred hCCCCcCHHHHHHHHHHHHHHHHHHHhCh
Confidence 34588999999999999998888877543
Done!