Query 023600
Match_columns 280
No_of_seqs 131 out of 305
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 09:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023600.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023600hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlwa_ a.1.1.1 (A:) Protozoan 25.4 22 0.0016 25.0 3.0 40 156-195 72-111 (116)
2 d1ngna_ a.96.1.2 (A:) Mismatch 21.4 1.2E+02 0.0085 22.4 6.7 33 161-193 55-87 (144)
3 d2r25a1 a.24.10.2 (A:2-167) Ph 19.4 65 0.0047 24.4 4.8 32 146-177 15-46 (166)
4 d1ntca_ a.4.1.12 (A:) DNA-bind 14.0 1.1E+02 0.008 20.5 4.5 17 174-190 72-89 (91)
5 d1zs4a1 a.35.1.9 (A:4-81) Regu 13.4 73 0.0053 21.8 3.1 46 173-219 27-73 (78)
6 d1idra_ a.1.1.1 (A:) Protozoan 11.6 78 0.0057 22.5 3.2 24 157-180 85-108 (127)
7 d1etxa_ a.4.1.12 (A:) FIS prot 11.5 1.1E+02 0.0082 20.7 3.8 16 174-189 70-86 (89)
8 d1veja1 a.5.2.1 (A:8-68) 49314 11.0 66 0.0048 21.1 2.2 36 59-96 1-38 (61)
9 d2io8a3 d.142.1.8 (A:201-378,A 10.8 85 0.0062 26.6 3.5 34 99-132 63-100 (297)
10 d1dlya_ a.1.1.1 (A:) Protozoan 10.1 1.1E+02 0.0079 20.9 3.5 24 157-180 75-98 (121)
No 1
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=25.44 E-value=22 Score=25.05 Aligned_cols=40 Identities=13% Similarity=0.139 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHH
Q 023600 156 ELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYG 195 (280)
Q Consensus 156 ~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~l~e~fyG 195 (280)
.+...-||.+-..+...+++.||+....+.+....+.+.+
T Consensus 72 ~I~~~~fd~~~~~l~~al~e~~v~~~~~~e~~~~~~~lr~ 111 (116)
T d1dlwa_ 72 GVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAETVRG 111 (116)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 4677889999999999999999984444444444444443
No 2
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.40 E-value=1.2e+02 Score=22.36 Aligned_cols=33 Identities=15% Similarity=0.072 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Q 023600 161 LYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIF 193 (280)
Q Consensus 161 L~D~ff~DvE~rlRe~GV~~~v~K~mK~l~e~f 193 (280)
|-+.=.++++.-|+..|....-.|+++++.+.+
T Consensus 55 la~a~~~el~~~Ir~~G~~~~KAk~I~~~a~~~ 87 (144)
T d1ngna_ 55 ARAADWRDVSELLKPLGLYDLRAKTIIKFSDEY 87 (144)
T ss_dssp HHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHhhhhHHHHHHHHHHHHhhH
Confidence 334445667777777776555677788887765
No 3
>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.44 E-value=65 Score=24.36 Aligned_cols=32 Identities=3% Similarity=0.092 Sum_probs=24.5
Q ss_pred HhhhcCchhhHHHHHHHHHHHHHHHHHHHHhc
Q 023600 146 RLKEEGKEGVELGQYLYEIYNHDVEMRVSKAG 177 (280)
Q Consensus 146 RLr~eg~~G~~l~Q~L~D~ff~DvE~rlRe~G 177 (280)
-|+...++...+.+.|++.|+.+++..+.++.
T Consensus 15 ~l~~m~~~d~~f~~~li~~F~~~~~~~~~~l~ 46 (166)
T d2r25a1 15 EIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQ 46 (166)
T ss_dssp HHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443445678999999999999999988753
No 4
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=14.03 E-value=1.1e+02 Score=20.45 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=13.8
Q ss_pred HHhcCc-hhhHHHHHHHH
Q 023600 174 SKAGVN-LLLSKWMKELE 190 (280)
Q Consensus 174 Re~GV~-~~v~K~mK~l~ 190 (280)
+.+||+ .++.++||++.
T Consensus 72 ~~LGI~R~TL~~Klk~~g 89 (91)
T d1ntca_ 72 RLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHTTCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHC
Confidence 458998 78999999874
No 5
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=13.36 E-value=73 Score=21.79 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=32.6
Q ss_pred HHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 023600 173 VSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWR 219 (280)
Q Consensus 173 lRe~GV~-~~v~K~mK~l~e~fyG~~~aYDeaL~~~d~d~~LA~ALwR 219 (280)
-..+||+ ..|.+|-..+..++-=.+..++-|+.+++ -++||.-+-+
T Consensus 27 A~amGv~esqiSRwK~~f~~q~smlLAvLE~GV~D~e-ma~Lak~vA~ 73 (78)
T d1zs4a1 27 AEAVGVDKSQISRWKRDWIPKFSMLLAVLEWGVVDDD-MARLARQVAA 73 (78)
T ss_dssp HHHHTSCHHHHHHHHHHTHHHHHHHHHHHTTCCCHHH-HHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHhhHHHHHHHHHHHHhccCcHH-HHHHHHHHHH
Confidence 3568998 88999988899998888878888885221 2455554443
No 6
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=11.64 E-value=78 Score=22.45 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCch
Q 023600 157 LGQYLYEIYNHDVEMRVSKAGVNL 180 (280)
Q Consensus 157 l~Q~L~D~ff~DvE~rlRe~GV~~ 180 (280)
+...-||.+-..+...|++.||+.
T Consensus 85 I~~~~f~~~~~~l~~al~e~~v~~ 108 (127)
T d1idra_ 85 ITMHHFSLVAGHLADALTAAGVPS 108 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCH
Confidence 556778999999999999999973
No 7
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=11.46 E-value=1.1e+02 Score=20.75 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=12.6
Q ss_pred HHhcCc-hhhHHHHHHH
Q 023600 174 SKAGVN-LLLSKWMKEL 189 (280)
Q Consensus 174 Re~GV~-~~v~K~mK~l 189 (280)
+.+||+ .++.++||++
T Consensus 70 ~~LGisR~tL~~klk~~ 86 (89)
T d1etxa_ 70 LMMGINRGTLRKKLKKY 86 (89)
T ss_dssp HHHTSCHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHh
Confidence 457888 7888888875
No 8
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.96 E-value=66 Score=21.09 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=17.0
Q ss_pred cCCccccccCCCCCCCCCCchhhHHHHH--HHHhhhhccC
Q 023600 59 SKPASLALALDSPLRVDEPKYEGIKRFI--LKLMLFYSKQ 96 (280)
Q Consensus 59 ~~p~s~~~~~~s~~~~~e~~~~g~~~~i--~kl~gf~sk~ 96 (280)
+|+||.+.....|. ..+......+=+ ++-|||+..+
T Consensus 1 ar~~sq~~~~~~~~--~~~~e~ry~~QL~qL~eMGF~d~~ 38 (61)
T d1veja1 1 ARACSQSSQTALPT--SLFTEGRYQQELEELKALGFANRD 38 (61)
T ss_dssp CSCCCCCCSSCCCC--GGGTTTTSHHHHHHHHHHTCCCHH
T ss_pred CcccccCccccCCC--CCCHHHHHHHHHHHHHHcCCCCHH
Confidence 46666444433332 222122344443 4558987644
No 9
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]}
Probab=10.78 E-value=85 Score=26.63 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHHhcC----ChhhhhhcCCCCchhhH
Q 023600 99 SIRGANVIYKRVVSQVD----KPAIYDVFNLEKTFRMT 132 (280)
Q Consensus 99 ~~r~a~~LY~~iv~qar----~p~fY~~~glpDTF~~r 132 (280)
..++++.|+..|++.++ ++.++..||+|..+...
T Consensus 63 l~~at~ELh~m~l~a~~~vv~~~~ll~~lgIP~~~~~~ 100 (297)
T d2io8a3 63 LIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPR 100 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHGGGCCCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHcCCCHHHHHH
Confidence 34677899999988654 67899999999987654
No 10
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=10.13 E-value=1.1e+02 Score=20.95 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCch
Q 023600 157 LGQYLYEIYNHDVEMRVSKAGVNL 180 (280)
Q Consensus 157 l~Q~L~D~ff~DvE~rlRe~GV~~ 180 (280)
+...-||.+-..+...|+++||+.
T Consensus 75 i~~~~f~~~~~~l~~al~~~~v~~ 98 (121)
T d1dlya_ 75 LSDVHFQAVARHLSDTLTELGVPP 98 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCH
Confidence 667778999999999999999973
Done!