BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023601
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R8U|A Chain A, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1)
Containing The N-Terminal Domain At 1.35 A Resolution
pdb|2R8U|B Chain B, Structure Of Fragment Of Human End-Binding Protein 1 (Eb1)
Containing The N-Terminal Domain At 1.35 A Resolution
Length = 268
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 111/209 (53%), Gaps = 12/209 (5%)
Query: 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
MD PG + + KV F AK E+E IQN+K+LQ F ++ + K I V+KL+KG+ DN EF
Sbjct: 48 MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEF 107
Query: 61 MQWMKRYCDSVNGGLIHSYNPLERRXXXXXXXXXXXXXXXXXXTNKGVTAAPKA-QSSHN 119
+QW K++ D+ G Y+P+ R K +T++ A Q +
Sbjct: 108 VQWFKKFFDANYDG--KDYDPVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPIS 165
Query: 120 ARRHDVTSVNPTTQASKTSKPSAVVPAYDE------QITELKLSVDSLEKERDFYFAKLR 173
+R T+ P K V DE Q+ LKL+V+ LEKERDFYF KLR
Sbjct: 166 TQR---TAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLKLTVEDLEKERDFYFGKLR 222
Query: 174 DIEILCQSPGIEHLPIVGAIKRILYATDD 202
+IE++CQ E+ P++ I ILYATD+
Sbjct: 223 NIELICQENEGENDPVLQRIVDILYATDE 251
>pdb|1WYO|A Chain A, Solution Structure Of The Ch Domain Of Human Microtubule-
Associated Protein RpEB FAMILY MEMBER 3
Length = 159
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
MD PG V + KV F AK E+E I N+KVLQ F K+ + K I V KL+KG+ DN EF
Sbjct: 55 MDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEF 114
Query: 61 MQWMKRYCDSVNGGLIHSYNPLERR 85
+QW K++ D+ G YNPL R
Sbjct: 115 IQWFKKFFDANYDG--KDYNPLLAR 137
>pdb|3CO1|A Chain A, Crystal Structure Of Microtubule Binding Domain Of Human
Eb3
Length = 132
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
MD PG V + KV F AK E+E I N+KVLQ F K+ + K I V KL+KG+ DN EF
Sbjct: 50 MDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEF 109
Query: 61 MQWMKRYCDSVNGGLIHSYNPLERR 85
+QW K++ D+ G YNPL R
Sbjct: 110 IQWFKKFFDANYDG--KDYNPLLAR 132
>pdb|1VKA|A Chain A, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
pdb|1VKA|B Chain B, Southeast Collaboratory For Structural Genomics:
Hypothetical Human Protein Q15691 N-Terminal Fragment
Length = 153
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
MD PG + + KV F AK E+E IQN+K+LQ F ++ + K I V+KL+KG+ DN EF
Sbjct: 61 MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEF 120
Query: 61 MQWMKRYCDSVNGGLIHSYNPLERR 85
+QW K++ D+ G Y+P+ R
Sbjct: 121 VQWFKKFFDANYDG--KDYDPVAAR 143
>pdb|1PA7|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
pdb|1UEG|A Chain A, Crystal Structure Of Amino-Terminal Microtubule Binding
Domain Of Eb1
Length = 130
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
MD PG + + KV F AK E+E IQN+K+LQ F ++ + K I V+KL+KG+ DN EF
Sbjct: 48 MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEF 107
Query: 61 MQWMKRYCDSVNGGLIHSYNPLERR 85
+QW K++ D+ G Y+P+ R
Sbjct: 108 VQWFKKFFDANYDG--KDYDPVAAR 130
>pdb|1V5K|A Chain A, Solution Structure Of The Ch Domain From Mouse Eb-1
Length = 115
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%)
Query: 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEF 60
MD PG + + KV F AK E+E IQN+K+LQ F ++ + K I V+KL+KG+ DN EF
Sbjct: 41 MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEF 100
Query: 61 MQWMKRYCDS 70
+QW K++ DS
Sbjct: 101 VQWFKKFFDS 110
>pdb|2QJZ|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
pdb|2QJZ|B Chain B, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 123
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFM 61
D PG + + KV F AK E+E IQN+K+LQ F + + K I V+KL+KG+ DN EF+
Sbjct: 39 DXLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRXGVDKIIPVDKLVKGKFQDNFEFV 98
Query: 62 QWMKRYCDSVNGGLIHSYNPLERR 85
QW K++ D+ G Y+P+ R
Sbjct: 99 QWFKKFFDANYDG--KDYDPVAAR 120
>pdb|4ABO|I Chain I, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 145
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 48/77 (62%), Gaps = 2/77 (2%)
Query: 9 VPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYC 68
+P+ KVNF+ +EY+ I N+KVLQ VF K I K ++ +L + + DNLEF+QW KR+
Sbjct: 46 IPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFW 105
Query: 69 DSVNGGLIHSYNPLERR 85
D G Y+ L RR
Sbjct: 106 DQYYPG--GDYDALARR 120
>pdb|3TQ7|B Chain B, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
Length = 82
Score = 67.8 bits (164), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/75 (46%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 148 DEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVV 207
++Q+ +LKL+VD LEKERDFYF+KLRDIE++CQ E+ P++ I ILYAT ++
Sbjct: 7 NQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYAT-EEGFAP 65
Query: 208 AEAQAMVFHQQKEAE 222
E + HQQ++ +
Sbjct: 66 PEDDEIEEHQQEDQD 80
>pdb|1YIG|A Chain A, Crystal Structure Of The Human Eb1 C-Terminal Dimerization
Domain
pdb|1YIG|B Chain B, Crystal Structure Of The Human Eb1 C-Terminal Dimerization
Domain
Length = 76
Score = 66.2 bits (160), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 149 EQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDD 202
+Q+ LKL+V+ LEKERDFYF KLR+IE++CQ E+ P++ I ILYATD+
Sbjct: 19 QQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIXDILYATDE 72
>pdb|1YIB|A Chain A, Crystal Structure Of The Human Eb1 C-terminal Dimerization
Domain
Length = 76
Score = 65.5 bits (158), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 149 EQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDD 202
+Q+ LKL+V+ LEKERDFYF KLR+IE++CQ E+ P++ I ILYATD+
Sbjct: 19 QQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDE 72
>pdb|2QJX|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 127
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 44/61 (72%)
Query: 7 GMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKR 66
G +P ++V F+A +EYE NYK+LQ F++ I K + V+KLI+ + DNLEF+QW+K+
Sbjct: 48 GDLPXNRVKFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKK 107
Query: 67 Y 67
+
Sbjct: 108 H 108
>pdb|1TXQ|B Chain B, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
Length = 86
Score = 64.3 bits (155), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 149 EQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDD 202
+Q+ LKL+V+ LEKERDFYF KLR+IE++CQ E+ P++ I ILYATD+
Sbjct: 16 QQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDE 69
>pdb|3GJO|A Chain A, Crystal Structure Of Human Eb1 In Complex With Microtubule
Tip Localization Signal Peptide Of Macf
pdb|3GJO|B Chain B, Crystal Structure Of Human Eb1 In Complex With Microtubule
Tip Localization Signal Peptide Of Macf
pdb|3GJO|C Chain C, Crystal Structure Of Human Eb1 In Complex With Microtubule
Tip Localization Signal Peptide Of Macf
pdb|3GJO|D Chain D, Crystal Structure Of Human Eb1 In Complex With Microtubule
Tip Localization Signal Peptide Of Macf
Length = 72
Score = 64.3 bits (155), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 149 EQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDD 202
+Q+ LKL+V+ LEKERDFYF KLR+IE++CQ E+ P++ I ILYATD+
Sbjct: 10 QQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDE 63
>pdb|1WU9|A Chain A, Crystal Structure Of The C-Terminal Domain Of The End-
Binding Protein 1 (Eb1)
pdb|1WU9|B Chain B, Crystal Structure Of The C-Terminal Domain Of The End-
Binding Protein 1 (Eb1)
pdb|2HKQ|A Chain A, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|2HL5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1 In
Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 80
Score = 63.9 bits (154), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 149 EQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDD 202
+Q+ LKL+V+ LEKERDFYF KLR+IE++CQ E+ P++ I ILYATD+
Sbjct: 10 QQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDE 63
>pdb|3TQ7|A Chain A, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of
P150glued
Length = 78
Score = 63.5 bits (153), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 149 EQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDD 202
+Q+ LKL+V+ LEKERDFYF KLR+IE++CQ E+ P++ I ILYATD+
Sbjct: 8 QQVNVLKLTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDE 61
>pdb|3MTU|A Chain A, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
pdb|3MTU|B Chain B, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
pdb|3MTU|C Chain C, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
pdb|3MTU|D Chain D, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
Length = 75
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 162 EKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDD 202
E ++DFYF KLR+IE++CQ E+ P++ I ILYATD+
Sbjct: 29 EADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDE 69
>pdb|3MUD|C Chain C, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
pdb|3MUD|D Chain D, Structure Of The Tropomyosin Overlap Complex From Chicken
Smooth Muscle
Length = 75
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 162 EKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDD 202
E ++DFYF KLR+IE++CQ E+ P++ I ILYATD+
Sbjct: 29 EADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDE 69
>pdb|4E61|A Chain A, Crystal Structure Of The Eb1-Like Motif Of Bim1p
pdb|4E61|B Chain B, Crystal Structure Of The Eb1-Like Motif Of Bim1p
Length = 106
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 135 SKTSKPSAVVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQS 181
++ +K + + +E+I + K +V +LE ER+FYF KLRDIEIL +
Sbjct: 11 AELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHT 57
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 224 LSPIAEVSEERTSSET----QKRKNIVNVDVDTAGITTLSPRQRLSDVSDVHCSGSPL 277
L IA +S T T Q N++ +++ IT L+P + L+ ++++ SG+PL
Sbjct: 46 LDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLTPLKNLTKITELELSGNPL 103
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 240 QKRKNIVNVDVDTAGITTLSPRQRLSDVSDVHCSGSPL 277
Q N++ +++ IT L+P + L+ ++++ SG+PL
Sbjct: 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,233,784
Number of Sequences: 62578
Number of extensions: 254153
Number of successful extensions: 545
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 23
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)