Query 023601
Match_columns 280
No_of_seqs 162 out of 428
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 05:15:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3000 Microtubule-binding pr 100.0 9.1E-60 2E-64 439.6 15.2 207 1-209 48-268 (295)
2 COG5217 BIM1 Microtubule-bindi 100.0 8.6E-41 1.9E-45 308.7 -0.5 206 1-215 40-285 (342)
3 PF03271 EB1: EB1-like C-termi 99.8 2E-20 4.4E-25 130.2 3.1 40 160-199 1-43 (43)
4 cd00014 CH Calponin homology d 97.4 0.00017 3.6E-09 56.1 3.9 66 1-68 39-106 (107)
5 PF00307 CH: Calponin homology 97.4 0.00013 2.7E-09 56.7 3.0 69 1-69 38-108 (108)
6 smart00033 CH Calponin homolog 95.1 0.018 4E-07 44.0 2.7 60 1-62 38-98 (103)
7 KOG1899 LAR transmembrane tyro 81.2 1.9 4E-05 45.7 4.2 36 146-181 178-213 (861)
8 PF11414 Suppressor_APC: Adeno 81.1 3.9 8.4E-05 32.5 5.1 33 144-176 9-41 (84)
9 PF06294 DUF1042: Domain of Un 79.2 2.7 5.9E-05 36.6 4.0 66 3-69 33-100 (158)
10 PF01763 Herpes_UL6: Herpesvir 76.7 4.2 9.1E-05 42.3 5.2 36 145-180 366-401 (557)
11 PF11971 CAMSAP_CH: CAMSAP CH 73.4 1.9 4.1E-05 34.1 1.4 47 3-49 32-81 (85)
12 KOG4196 bZIP transcription fac 51.2 27 0.00057 30.2 4.3 30 145-174 84-113 (135)
13 PF09701 Cas_Cmr5: CRISPR-asso 49.5 13 0.00027 30.7 2.1 15 56-70 106-120 (122)
14 PF11577 NEMO: NF-kappa-B esse 48.4 47 0.001 25.5 4.9 17 159-175 41-57 (68)
15 COG5217 BIM1 Microtubule-bindi 41.5 24 0.00051 34.3 2.9 47 9-56 166-212 (342)
16 PF01166 TSC22: TSC-22/dip/bun 38.5 68 0.0015 24.2 4.3 29 141-169 13-41 (59)
17 PRK09413 IS2 repressor TnpA; R 36.0 51 0.0011 26.9 3.7 24 144-167 73-96 (121)
18 TIGR01881 cas_Cmr5 CRISPR-asso 32.5 33 0.00071 29.0 2.1 52 20-71 64-124 (127)
19 KOG0464 Elongation factor G [T 31.9 23 0.00051 36.5 1.3 11 56-66 323-333 (753)
20 PF07586 HXXSHH: Protein of un 30.2 66 0.0014 30.2 3.9 37 145-181 165-202 (302)
21 PF09006 Surfac_D-trimer: Lung 29.8 1.5E+02 0.0032 21.3 4.7 32 144-179 1-32 (46)
22 PF15007 CEP44: Centrosomal sp 29.2 45 0.00097 28.7 2.4 40 24-63 2-41 (131)
23 PF10146 zf-C4H2: Zinc finger- 27.6 82 0.0018 29.3 4.0 27 150-176 33-59 (230)
24 PF07462 MSP1_C: Merozoite sur 27.4 4.7E+02 0.01 27.8 9.6 58 20-86 183-249 (574)
25 PHA01365 hypothetical protein 26.9 31 0.00067 27.7 0.9 16 29-44 10-25 (91)
26 PF05604 DUF776: Protein of un 26.1 33 0.00071 30.9 1.0 21 29-49 11-31 (178)
27 PF14225 MOR2-PAG1_C: Cell mor 25.6 52 0.0011 30.9 2.3 40 17-56 17-56 (262)
28 PF11569 Homez: Homeodomain le 23.6 54 0.0012 24.4 1.6 40 27-66 9-48 (56)
29 PF12833 HTH_18: Helix-turn-he 22.8 99 0.0021 22.6 3.0 50 19-69 22-72 (81)
30 PF14056 DUF4250: Domain of un 22.8 36 0.00078 25.1 0.6 34 163-200 15-48 (55)
31 smart00338 BRLZ basic region l 22.5 1.7E+02 0.0037 21.1 4.2 29 143-171 34-62 (65)
32 PF04977 DivIC: Septum formati 22.4 1.1E+02 0.0023 22.4 3.1 24 143-166 25-48 (80)
33 PF07716 bZIP_2: Basic region 22.4 1.2E+02 0.0026 21.4 3.2 20 145-164 35-54 (54)
34 PF02195 ParBc: ParB-like nucl 20.5 94 0.002 23.2 2.5 46 9-54 3-49 (90)
35 KOG4571 Activating transcripti 20.4 95 0.0021 30.1 3.0 24 143-166 256-279 (294)
36 cd01786 STE50_RA Ubiquitin-lik 20.2 73 0.0016 26.2 1.9 15 28-42 38-52 (98)
37 smart00515 eIF5C Domain at the 20.1 1E+02 0.0022 23.4 2.6 30 171-201 17-46 (83)
38 PRK10803 tol-pal system protei 20.0 1.2E+02 0.0026 28.3 3.5 27 143-169 62-96 (263)
No 1
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=9.1e-60 Score=439.64 Aligned_cols=207 Identities=43% Similarity=0.658 Sum_probs=158.8
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHHhhCCCCCCCCC
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN 80 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d~n~~g~~~~YD 80 (280)
|||||||+|||+||||+|+.||||++|||+||++|+||||+|+|||++|+||+|||||||+||||+|||+||+| .+||
T Consensus 48 md~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~~f~klgi~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~~g--~~yd 125 (295)
T KOG3000|consen 48 MDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQTCFNKLGIDKVVDVDKLVKGPFQDNLEFLQWFKKFFDANYGG--KGYD 125 (295)
T ss_pred hhhccCCccccccccccccccchhhhhhHHHHHHHHhcCCcccccHHHHhcccccchHHHHHHHHHHhhccCCc--cccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999998 7999
Q ss_pred HHHhhhhcCCCCCCCcCCCCCCCCCCC----CCCCCC---CCCCCCCccCCCCCCCCC----CCCCCCCCCCCchhHHHH
Q 023601 81 PLERRESCKGGKEASKKSASSQSTNKG----VTAAPK---AQSSHNARRHDVTSVNPT----TQASKTSKPSAVVPAYDE 149 (280)
Q Consensus 81 p~~rR~~~~gg~~~~~~~~~~~~~s~~----a~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~L~~ 149 (280)
|++||++.+++......++.+.+.+.. +++.+. +...+...++.......+ ....+.....+++.+|.+
T Consensus 126 ~~~~R~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~~~l~~ 205 (295)
T KOG3000|consen 126 ALARREGIGIGRSAISEGSKGVSAPKILSPVSSAAPQNFVPARTPQTLRNNKPCVEFGGKPNIALYPVDKLKQELEELTQ 205 (295)
T ss_pred HHHHhhcccccccCccccccccccccccccccccCcccCCCccCcccccCCCCCcccccccccccccchhhhHHHHHHHH
Confidence 999999986665443222211111100 000000 011111111111100000 000011123667899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCChh--HHHHHHHHHhccCCCCccchh
Q 023601 150 QITELKLSVDSLEKERDFYFAKLRDIEILCQS-PGIEHLP--IVGAIKRILYATDDDASVVAE 209 (280)
Q Consensus 150 qi~eLk~~ve~LEkERDFYF~KLRdIEiLcQe-~e~e~~~--~i~~I~~ILYATeeg~~~~~e 209 (280)
|+.++++++++||+||||||+|||+||||||+ ++.++.| ++++|+.|||+|++||+.+++
T Consensus 206 ~l~~~~~~~~~le~ERdfyf~kLr~iEil~q~~~~~e~~~~~~v~rI~~ilyat~~g~~~~~~ 268 (295)
T KOG3000|consen 206 QLTELKTTIASLEKERDFYFSKLRDIEILCQTSPDPESIPNVMVKRILSILYATEEGFDPPPD 268 (295)
T ss_pred HHHHHHHhhhhhHHHHHHHHhhccchhhhccCCCccccccHHHHHHHHHHHhhhhccccCCCc
Confidence 99999999999999999999999999999998 6677777 899999999999999988764
No 2
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=8.6e-41 Score=308.73 Aligned_cols=206 Identities=26% Similarity=0.283 Sum_probs=140.5
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHHhhCCCCCCCCC
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN 80 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d~n~~g~~~~YD 80 (280)
||.|| +++||++|+|++..||+|+.||||||.+|.+.||||.+.|++|+.|+||||||||||+|+||++|+++ ..||
T Consensus 40 ~dsiY-~Dlp~~~V~f~~~aey~~~~n~kILq~~Fs~~Gidk~v~v~~lvrck~qdnLeflQwlk~hWvr~~~~--~~yd 116 (342)
T COG5217 40 HDSIY-VDLPDSLVRFPWIAEYKHPGNGKILQLLFSDYGIDKAVLVLVLVRCKLQDNLEFLQWLKDHWVRNLGH--ISYD 116 (342)
T ss_pred HHHHh-ccCcHhhccccchhheecCCchhHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CccC
Confidence 68899 99999999999999999999999999999999999999999999999999999999999999999997 6999
Q ss_pred HHHhhhhcCCCCCCC-----cCCCCCCCCCCCCCCCCCCCCCCCCccC-CCCCCCCCCCCCCCCC-C----------CCc
Q 023601 81 PLERRESCKGGKEAS-----KKSASSQSTNKGVTAAPKAQSSHNARRH-DVTSVNPTTQASKTSK-P----------SAV 143 (280)
Q Consensus 81 p~~rR~~~~gg~~~~-----~~~~~~~~~s~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~----------~~~ 143 (280)
|.+||.+.. +.... .++.+.+. ++.+..+++.++.+. .+.-.+.+-..+.+++ . ++.
T Consensus 117 ~~arr~~r~-p~~tr~~~~~~rs~~~p~-----sa~r~~s~G~~s~~sl~t~hss~~~N~v~~ta~t~~~Lra~qa~Qe~ 190 (342)
T COG5217 117 RNARRLGRT-PKSTRELIEWIRSLGIPI-----SAIRELSKGVASCKSLSTIHSSFPQNFVKNTAGTHDYLRAMQACQEF 190 (342)
T ss_pred hhHHhcCCC-cchHHHHHhhhhhcCCch-----hhhhhhccCcccchhhhhhhcccccccccCcchhHHHHHHHHHHHHH
Confidence 999995431 11100 00000000 000000011111100 0000000000001111 1 122
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------CCCCh-----hHHHHHHHHHhcc
Q 023601 144 VPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSP------------------GIEHL-----PIVGAIKRILYAT 200 (280)
Q Consensus 144 ~~~L~~qi~eLk~~ve~LEkERDFYF~KLRdIEiLcQe~------------------e~e~~-----~~i~~I~~ILYAT 200 (280)
+..|+.++-+.+.++-.||.||+|||+|||+||||+|.. ...+. ...++|++|||+|
T Consensus 191 igSln~~ly~~~~t~~~le~er~fYfnKlr~ieilv~t~k~~~~~~~~~~~~~~~~~h~~~t~~~m~~~~~rI~~ily~t 270 (342)
T COG5217 191 IGSLNIKLYFPVDTLVKLEMERAFYFNKLRSIEILVETLKREGPRASILPGTSLQCPHCKNTREIMDAKDNRIKEILYMT 270 (342)
T ss_pred hhccceeeeeeccccceeeeHHHHHhhhcchhHHHHHHHhhhCccccccCCccccCCccCCCHHHHHHHHHHHHHHHHHh
Confidence 334445566667788899999999999999999999871 11121 3689999999999
Q ss_pred CCCCccchhHHHHHh
Q 023601 201 DDDASVVAEAQAMVF 215 (280)
Q Consensus 201 eeg~~~~~e~~~~~~ 215 (280)
++||+-+.+.++...
T Consensus 271 a~gfe~~~d~eadls 285 (342)
T COG5217 271 ASGFERIMDMEADLS 285 (342)
T ss_pred hhhhhcCCCchhhhh
Confidence 999988766555443
No 3
>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites. EB1 members have a bipartite composition: the N-terminal CH domain (IPR001715 from INTERPRO) mediates microtubule plus end localization and a C-terminal cargo binding domain (EB1-C) that captures cell polarity determinants. The EB1-C domain comprises a unique EB1-like sequence motif that acts as a binding site for other +TIP proteins. It interacts with the carboxy terminus of the adenomatous polyposis coli (APC) tumor suppressor, a well conserved +TIP phosphoprotein with a pivotal function in cell cycle regulation. Another binding partner of the EB1-C domain is the well conserved +TIP protein dynactin, a component of the large cytoplasmic dynein/dynactin complex [, , ]. The ~80-residue EB1-C domain starts with a long smoothly curved helix (alpha1), which is followed by a hairpin connection leading to a short second helix (alpha2) running antiparallel to alpha1. The two parallel alpha1 helices of the EB1-C domain dimer wrap around each other in a slightly left-handed supercoil. The two alpha2 helices run antiparallel to helices alpha1 and form a similar fork in the opposite orientation and rotated by 90 degrees. As a result, two helical segments from each monomer form a four-helix bundle. The side chain forming the hydrophobic core of this bundle are highly conserved [, , ]. Some protein known to contain an EB1-C domain are listed below: Yeast protein BIM1. Fission yeast microtubule integrity protein mal3. Vertebrate microtubule-associated protein RP/EB family member 1 (EB1). Vertebrate microtubule-associated protein RP/EB family member 2 (EB2 or RP1). Vertebrate microtubule-associated protein RP/EB family member 3 (EBF3). ; GO: 0008017 microtubule binding; PDB: 3TQ7_B 4E61_B 2HKQ_A 1YIG_B 3GJO_B 2HL5_B 1YIB_A 1WU9_A 1TXQ_B.
Probab=99.80 E-value=2e-20 Score=130.20 Aligned_cols=40 Identities=65% Similarity=1.002 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC-CCCCCh--hHHHHHHHHHhc
Q 023601 160 SLEKERDFYFAKLRDIEILCQS-PGIEHL--PIVGAIKRILYA 199 (280)
Q Consensus 160 ~LEkERDFYF~KLRdIEiLcQe-~e~e~~--~~i~~I~~ILYA 199 (280)
+||+||||||+||||||+|||+ .+.++. .++++|++||||
T Consensus 1 ~le~ERdFYf~KLR~IE~l~q~~~~~~~~~~~~~~~I~~ILYa 43 (43)
T PF03271_consen 1 SLEKERDFYFNKLRDIEILCQEANESENEPKDLIKKIQEILYA 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHCCTC--HHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHhcC
Confidence 6999999999999999999999 444433 489999999997
No 4
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=97.41 E-value=0.00017 Score=56.09 Aligned_cols=66 Identities=17% Similarity=0.309 Sum_probs=61.1
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccc-ccccccc-ccCCcccHHHHHHHHHHH
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKH-IEVNKLI-KGRPLDNLEFMQWMKRYC 68 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~-IpVekLv-kgk~qdNlEFlQWfkkf~ 68 (280)
|+.++|+.++..+++ +....+.++|....-++.+++||+.. +..+.|+ +|.....+.++.++..+|
T Consensus 39 l~~~~p~~~~~~~~~--~~~~~~~~~Ni~~~l~~~~~~gi~~~~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 39 LNSLSPDLIDKKKIN--PLSRFKRLENINLALNFAEKLGVPVVNFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred HHHHCcccccccccc--ccchhhHHHHHHHHHHHHHHcCCceeccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 357899999998876 88899999999999999999999999 9999999 999999999999999887
No 5
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=97.39 E-value=0.00013 Score=56.74 Aligned_cols=69 Identities=25% Similarity=0.461 Sum_probs=58.3
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHh-cCccccccccccc-ccCCcccHHHHHHHHHHHH
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNK-LKITKHIEVNKLI-KGRPLDNLEFMQWMKRYCD 69 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K-~~I~K~IpVekLv-kgk~qdNlEFlQWfkkf~d 69 (280)
|+.++|+.|++++++=+.+...+.++|..++-+++++ +||+..+..+.|+ .|..+..+.|+.+|+++|.
T Consensus 38 i~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~~~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 38 INKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPPLLSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp HHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSCTS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred HHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3568999999999921112889999999999999998 9999999999999 9999999999999999984
No 6
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=95.09 E-value=0.018 Score=44.03 Aligned_cols=60 Identities=25% Similarity=0.302 Sum_probs=50.0
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCc-ccccccccccccCCcccHHHHH
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKI-TKHIEVNKLIKGRPLDNLEFMQ 62 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I-~K~IpVekLvkgk~qdNlEFlQ 62 (280)
|+.++|+.|+.++++ .++...+.++|......+.+++|+ ...+..+.|+.|+ .+.+-++.
T Consensus 38 ~~~l~p~~i~~~~~~-~~~~~~~~~~Ni~~~l~~~~~~g~~~~~~~~~Dl~~~~-k~~~~v~~ 98 (103)
T smart00033 38 LNSLSPGSVDKKKVN-ASLSRFKKIENINLALSFAEKLGGKLVLFEPEDLVEGN-KLILGVIW 98 (103)
T ss_pred HHHHCCCcCChhhcc-ccccHHHHHHhHHHHHHHHHHcCCeeeccCHHHHhhcc-hHHHHHHH
Confidence 467899999988776 677789999999999999999997 4678899999997 56665543
No 7
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=81.22 E-value=1.9 Score=45.66 Aligned_cols=36 Identities=39% Similarity=0.387 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023601 146 AYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQS 181 (280)
Q Consensus 146 ~L~~qi~eLk~~ve~LEkERDFYF~KLRdIEiLcQe 181 (280)
+|+.++.+||+....||||+.=|=.|||+-|-|.|+
T Consensus 178 DLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qe 213 (861)
T KOG1899|consen 178 DLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQE 213 (861)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHH
Confidence 567789999999999999999999999999999987
No 8
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=81.10 E-value=3.9 Score=32.50 Aligned_cols=33 Identities=21% Similarity=0.449 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023601 144 VPAYDEQITELKLSVDSLEKERDFYFAKLRDIE 176 (280)
Q Consensus 144 ~~~L~~qi~eLk~~ve~LEkERDFYF~KLRdIE 176 (280)
+.+|.+|-.-|---++-+|++||.|+..|+.+-
T Consensus 9 mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq 41 (84)
T PF11414_consen 9 MKELEQEKDVLLQGLEMEERERDWYQQQLQSVQ 41 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777788999999999999998864
No 9
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=79.18 E-value=2.7 Score=36.57 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=45.1
Q ss_pred ccCCCCccCcccccccCChHHHHHhHHHH-HHHHHhcCcccccc-cccccccCCcccHHHHHHHHHHHH
Q 023601 3 ATHPGMVPMHKVNFDAKSEYEMIQNYKVL-QDVFNKLKITKHIE-VNKLIKGRPLDNLEFMQWMKRYCD 69 (280)
Q Consensus 3 ~lfPg~Vpl~KVkF~a~~e~e~i~NfKvL-Q~aF~K~~I~K~Ip-VekLvkgk~qdNlEFlQWfkkf~d 69 (280)
..||..|.|+.--- +..-.--+.||..| +.+|+|+||.-.-. ++.++.|+...=--+|.=++.+..
T Consensus 33 ~y~p~~vdlh~y~~-~~s~~~Kl~NW~~Ln~kvl~kl~~~l~~~~i~~i~~~~~Gaae~lL~~L~~~l~ 100 (158)
T PF06294_consen 33 RYYPKLVDLHNYSN-GNSVAQKLNNWETLNEKVLKKLGIKLDKEDIEGIINCKPGAAESLLYQLYTKLT 100 (158)
T ss_dssp HH-TTT---SS-----SSHHHHHHHHHHHHHHTTGGGT----HHHHHHHHTT-TTTTHHHHHHHHHHHH
T ss_pred HHCCCCccccccCC-CCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 35788888886554 55667789999999 99999999975433 889999999999999988888873
No 10
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=76.73 E-value=4.2 Score=42.34 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023601 145 PAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQ 180 (280)
Q Consensus 145 ~~L~~qi~eLk~~ve~LEkERDFYF~KLRdIEiLcQ 180 (280)
.=|.+||+++=.+|++|++||+.|=.|||++|....
T Consensus 366 kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~ 401 (557)
T PF01763_consen 366 KCLEGQINNQFDTIEDLKEENQDLEKKLRELESELS 401 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999865
No 11
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=73.41 E-value=1.9 Score=34.05 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=36.8
Q ss_pred ccCCCCccCcccccccC-ChHHHHHhHHHHHHHHHh-cCccc-ccccccc
Q 023601 3 ATHPGMVPMHKVNFDAK-SEYEMIQNYKVLQDVFNK-LKITK-HIEVNKL 49 (280)
Q Consensus 3 ~lfPg~Vpl~KVkF~a~-~e~e~i~NfKvLQ~aF~K-~~I~K-~IpVekL 49 (280)
..+|+.||++.|+|... +..+.+.|+.+|++...+ +|... ++.++.|
T Consensus 32 ~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~edl 81 (85)
T PF11971_consen 32 FYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPEDL 81 (85)
T ss_pred HhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHHH
Confidence 46899999999999876 679999999999998666 56553 3344444
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=51.19 E-value=27 Score=30.24 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023601 145 PAYDEQITELKLSVDSLEKERDFYFAKLRD 174 (280)
Q Consensus 145 ~~L~~qi~eLk~~ve~LEkERDFYF~KLRd 174 (280)
..|.+|+..|+..+..|-.|||.|=+|+-.
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778999999999999999999888754
No 13
>PF09701 Cas_Cmr5: CRISPR-associated protein (Cas_Cmr5); InterPro: IPR010160 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a family of Cas proteins as represented by TM1791.1 from Thermotoga maritima. This family of Cas proteins are found in both archaeal and bacterial species.; PDB: 2OEB_A 2ZOP_A.
Probab=49.46 E-value=13 Score=30.72 Aligned_cols=15 Identities=33% Similarity=1.136 Sum_probs=12.8
Q ss_pred ccHHHHHHHHHHHHh
Q 023601 56 DNLEFMQWMKRYCDS 70 (280)
Q Consensus 56 dNlEFlQWfkkf~d~ 70 (280)
.-|+|+.|+|+|.++
T Consensus 106 e~La~l~WlKRfAea 120 (122)
T PF09701_consen 106 EALAFLNWLKRFAEA 120 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 458999999999875
No 14
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=48.39 E-value=47 Score=25.48 Aligned_cols=17 Identities=24% Similarity=0.505 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023601 159 DSLEKERDFYFAKLRDI 175 (280)
Q Consensus 159 e~LEkERDFYF~KLRdI 175 (280)
+..-+||+||+.||+.=
T Consensus 41 e~~~~e~~~~~~kf~Ea 57 (68)
T PF11577_consen 41 EKQKEEREFLERKFQEA 57 (68)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667999999999863
No 15
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=41.48 E-value=24 Score=34.32 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=40.0
Q ss_pred ccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcc
Q 023601 9 VPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLD 56 (280)
Q Consensus 9 Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qd 56 (280)
.|..-|+ ++-.+++|+.|.+.-|+.|..++|.-+.|++.|++++.++
T Consensus 166 ~~~N~v~-~ta~t~~~Lra~qa~Qe~igSln~~ly~~~~t~~~le~er 212 (342)
T COG5217 166 FPQNFVK-NTAGTHDYLRAMQACQEFIGSLNIKLYFPVDTLVKLEMER 212 (342)
T ss_pred ccccccc-CcchhHHHHHHHHHHHHHhhccceeeeeeccccceeeeHH
Confidence 3444444 3446899999999999999999999999999999999997
No 16
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=38.48 E-value=68 Score=24.17 Aligned_cols=29 Identities=31% Similarity=0.348 Sum_probs=25.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023601 141 SAVVPAYDEQITELKLSVDSLEKERDFYF 169 (280)
Q Consensus 141 ~~~~~~L~~qi~eLk~~ve~LEkERDFYF 169 (280)
..+++.|.++|.+|...+..||.|-.+|=
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999977653
No 17
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=35.98 E-value=51 Score=26.92 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 023601 144 VPAYDEQITELKLSVDSLEKERDF 167 (280)
Q Consensus 144 ~~~L~~qi~eLk~~ve~LEkERDF 167 (280)
+.++.+++.+|+..+..|+.|+||
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~di 96 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENEL 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888885
No 18
>TIGR01881 cas_Cmr5 CRISPR-associated protein, Cmr5 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species as part of the 6-gene CRISPR RAMP module.
Probab=32.47 E-value=33 Score=28.99 Aligned_cols=52 Identities=15% Similarity=0.388 Sum_probs=35.8
Q ss_pred ChHHHHHhHHHHHHHHHhcCc-ccc-cccccccccCCc-------ccHHHHHHHHHHHHhh
Q 023601 20 SEYEMIQNYKVLQDVFNKLKI-TKH-IEVNKLIKGRPL-------DNLEFMQWMKRYCDSV 71 (280)
Q Consensus 20 ~e~e~i~NfKvLQ~aF~K~~I-~K~-IpVekLvkgk~q-------dNlEFlQWfkkf~d~n 71 (280)
.+..|.-=+..|-..|.+.++ ++. ..++.|+.+.+. .-++|+.|+|+|-++-
T Consensus 64 ~~~~y~~l~~~l~~~L~~~~~~~~~~~l~~~il~~~~~~y~~~T~eaL~~l~WLKRfAea~ 124 (127)
T TIGR01881 64 DETSYTKYYAHILYWLKERELVDKFKNALKELMEKDYSDSRIATEEALRYLNWLKRLAEAL 124 (127)
T ss_pred hHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667888888888764 322 346667776543 3579999999998763
No 19
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=31.86 E-value=23 Score=36.52 Aligned_cols=11 Identities=55% Similarity=1.105 Sum_probs=9.5
Q ss_pred ccHHHHHHHHH
Q 023601 56 DNLEFMQWMKR 66 (280)
Q Consensus 56 dNlEFlQWfkk 66 (280)
-|+|||||.|.
T Consensus 323 rnyeflqwykd 333 (753)
T KOG0464|consen 323 RNYEFLQWYKD 333 (753)
T ss_pred cchHHHhhhhh
Confidence 49999999875
No 20
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=30.17 E-value=66 Score=30.22 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcC
Q 023601 145 PAYDEQITELKLSVDSLEKER-DFYFAKLRDIEILCQS 181 (280)
Q Consensus 145 ~~L~~qi~eLk~~ve~LEkER-DFYF~KLRdIEiLcQe 181 (280)
..+.+++..|+..+-.-+++| |-||.-+|+||-=.+.
T Consensus 165 D~v~~d~~~L~~~Lg~~Dr~kLd~yl~sireiE~rl~~ 202 (302)
T PF07586_consen 165 DLVREDAKSLRRRLGAEDRQKLDQYLDSIREIEKRLQQ 202 (302)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556778888888888888888 9999999999987643
No 21
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=29.79 E-value=1.5e+02 Score=21.33 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023601 144 VPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILC 179 (280)
Q Consensus 144 ~~~L~~qi~eLk~~ve~LEkERDFYF~KLRdIEiLc 179 (280)
+.+|.+|++.|+.+|..|+. =|++.+..|++-
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~----~fs~yKKa~lFp 32 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQA----AFSQYKKAELFP 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCC
Confidence 35788899999999988887 478888887764
No 22
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=29.15 E-value=45 Score=28.65 Aligned_cols=40 Identities=23% Similarity=0.423 Sum_probs=33.9
Q ss_pred HHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHH
Q 023601 24 MIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQW 63 (280)
Q Consensus 24 ~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQW 63 (280)
-.+|++.||..+.+++-+..|+...|.+|..-+=+-||..
T Consensus 2 l~~~l~~L~~~Lr~~~yp~~vd~~~l~~G~p~afLpil~~ 41 (131)
T PF15007_consen 2 LKGNLRRLEQELRSLKYPDEVDYQGLYKGDPSAFLPILHY 41 (131)
T ss_pred hhhHHHHHHHHHHHCCCCCccCHHHHhcCCHHHHHHHHHH
Confidence 3589999999999999999999999999988655555543
No 23
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=27.65 E-value=82 Score=29.25 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023601 150 QITELKLSVDSLEKERDFYFAKLRDIE 176 (280)
Q Consensus 150 qi~eLk~~ve~LEkERDFYF~KLRdIE 176 (280)
-|+|++...+.|..||.++=.-||+|.
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999884
No 24
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=27.43 E-value=4.7e+02 Score=27.77 Aligned_cols=58 Identities=22% Similarity=0.392 Sum_probs=33.9
Q ss_pred ChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHH-HHHHHHHH--------hhCCCCCCCCCHHHhhh
Q 023601 20 SEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFM-QWMKRYCD--------SVNGGLIHSYNPLERRE 86 (280)
Q Consensus 20 ~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFl-QWfkkf~d--------~n~~g~~~~YDp~~rR~ 86 (280)
.-|=-+.+||||-..=-|+| +.|..+| .|+-+| -|++..|. .+|.|..+.=+..+.+.
T Consensus 183 dNylnlEkFrvlSrlEgrl~--~Ni~LeK-------enIsYlSsgLhHv~tElKeii~nK~YtG~~~~~n~~~Vk~ 249 (574)
T PF07462_consen 183 DNYLNLEKFRVLSRLEGRLG--KNINLEK-------ENISYLSSGLHHVFTELKEIIKNKKYTGNDHAKNIAEVKE 249 (574)
T ss_pred hhhhhHHHHHHHHHHHHHhc--cccccch-------hhhhhhhhhHHHHHHHHHHHHhcCCCCCCChhhhHHHHHH
Confidence 33555779999988766665 4555555 445444 46666663 35666433444444554
No 25
>PHA01365 hypothetical protein
Probab=26.87 E-value=31 Score=27.69 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCccccc
Q 023601 29 KVLQDVFNKLKITKHI 44 (280)
Q Consensus 29 KvLQ~aF~K~~I~K~I 44 (280)
|+||.+|+-.+|+|.+
T Consensus 10 rilqK~fkdskieki~ 25 (91)
T PHA01365 10 KLLQKCFKDSSIDVIF 25 (91)
T ss_pred HHHHHHhCCCceEEEE
Confidence 7999999999999963
No 26
>PF05604 DUF776: Protein of unknown function (DUF776); InterPro: IPR008494 This family consists of several highly related Mus musculus and Homo sapiens proteins of unknown function.
Probab=26.06 E-value=33 Score=30.92 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCcccccccccc
Q 023601 29 KVLQDVFNKLKITKHIEVNKL 49 (280)
Q Consensus 29 KvLQ~aF~K~~I~K~IpVekL 49 (280)
.-||.||+||.||-.--|-.|
T Consensus 11 esLQTAFKKLRVDA~~~~asl 31 (178)
T PF05604_consen 11 ESLQTAFKKLRVDAEGSIASL 31 (178)
T ss_pred HHHHHHHHHheeccccCeeee
Confidence 369999999999975444333
No 27
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=25.60 E-value=52 Score=30.94 Aligned_cols=40 Identities=18% Similarity=0.280 Sum_probs=37.0
Q ss_pred ccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcc
Q 023601 17 DAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLD 56 (280)
Q Consensus 17 ~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qd 56 (280)
++..|+||+.=.++|...+.|+.+++.--++.|.++..+.
T Consensus 17 ~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~ 56 (262)
T PF14225_consen 17 ESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQL 56 (262)
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCcc
Confidence 4578999999999999999999999998899999999886
No 28
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=23.63 E-value=54 Score=24.39 Aligned_cols=40 Identities=15% Similarity=0.329 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHH
Q 023601 27 NYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKR 66 (280)
Q Consensus 27 NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkk 66 (280)
|.+.|++-|.+++.=..-+++.|+.-.-..-=+...||-.
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~ 48 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAE 48 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHH
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHH
Confidence 4566999999999999999999998877777788889875
No 29
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=22.84 E-value=99 Score=22.57 Aligned_cols=50 Identities=12% Similarity=0.166 Sum_probs=34.1
Q ss_pred CChHHHHHhHHHHHHHHHhcCccccccccccc-ccCCcccHHHHHHHHHHHH
Q 023601 19 KSEYEMIQNYKVLQDVFNKLKITKHIEVNKLI-KGRPLDNLEFMQWMKRYCD 69 (280)
Q Consensus 19 ~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLv-kgk~qdNlEFlQWfkkf~d 69 (280)
.+-.+|++.+|+....- -+-=....+|..++ ++.|.+--.|...||+++.
T Consensus 22 ~s~~~~~~~~R~~~a~~-~L~~~~~~~i~~ia~~~Gf~~~~~f~~~fk~~~g 72 (81)
T PF12833_consen 22 MSFKQYLRELRLQRAKE-LLRQNTDLSIAEIAEECGFSSQSHFSRAFKRYFG 72 (81)
T ss_dssp S-HHHHHHHHHHHHHHH-HHHHHTT--HHHHHHHTT-SSHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHHH-HHHHhhcccHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence 45678999888765433 22113578888866 8999999999999999974
No 30
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=22.79 E-value=36 Score=25.13 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHhcc
Q 023601 163 KERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYAT 200 (280)
Q Consensus 163 kERDFYF~KLRdIEiLcQe~e~e~~~~i~~I~~ILYAT 200 (280)
|=||+|. ++|-||..-+.....+++++..|=|.=
T Consensus 15 kLRD~~~----sLd~Lc~~~~id~~~l~~kL~~~Gy~Y 48 (55)
T PF14056_consen 15 KLRDEYS----SLDELCYDYDIDKEELEEKLASIGYEY 48 (55)
T ss_pred HHHhccC----CHHHHHHHhCCCHHHHHHHHHHcCCeE
Confidence 4488887 789999988777777888888776643
No 31
>smart00338 BRLZ basic region leucin zipper.
Probab=22.49 E-value=1.7e+02 Score=21.15 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023601 143 VVPAYDEQITELKLSVDSLEKERDFYFAK 171 (280)
Q Consensus 143 ~~~~L~~qi~eLk~~ve~LEkERDFYF~K 171 (280)
.+..|..++.+|+..++.|+.|-..+=+.
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777888887776554433
No 32
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.42 E-value=1.1e+02 Score=22.37 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 023601 143 VVPAYDEQITELKLSVDSLEKERD 166 (280)
Q Consensus 143 ~~~~L~~qi~eLk~~ve~LEkERD 166 (280)
++.+|+.++.+++...+.|+.|.+
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555433
No 33
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.38 E-value=1.2e+02 Score=21.42 Aligned_cols=20 Identities=25% Similarity=0.481 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 023601 145 PAYDEQITELKLSVDSLEKE 164 (280)
Q Consensus 145 ~~L~~qi~eLk~~ve~LEkE 164 (280)
..|..++..|+..+..|++|
T Consensus 35 ~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 35 QELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44455555555555555554
No 34
>PF02195 ParBc: ParB-like nuclease domain; InterPro: IPR003115 Proteins containing this domain, appear to be related to the Escherichia coli plasmid protein ParB, which preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.; GO: 0003677 DNA binding; PDB: 1VK1_A 3CYI_A 1YZS_A 2RII_X 2B6F_A 3HY2_Y 1XW4_X 1XW3_A 1VZ0_G 1R71_C ....
Probab=20.45 E-value=94 Score=23.18 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=34.6
Q ss_pred ccCcccccccCChHHH-HHhHHHHHHHHHhcCcccccccccccccCC
Q 023601 9 VPMHKVNFDAKSEYEM-IQNYKVLQDVFNKLKITKHIEVNKLIKGRP 54 (280)
Q Consensus 9 Vpl~KVkF~a~~e~e~-i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~ 54 (280)
||+.+++.+....... -..+.-|.+.+++.|+..+|-|.+.-.|+|
T Consensus 3 v~~~~l~~~~~~~r~~~~~~~~~l~~si~~~G~~~Pi~v~~~~~~~~ 49 (90)
T PF02195_consen 3 VPISKLKPSPDNPRKDDPEKIEELAESIKENGQLQPIIVRRRNDGKY 49 (90)
T ss_dssp EEGGGEE-SBS-HHHHHHHHHHHHHHHHHHHGCSS-EEEEEECTCEE
T ss_pred EeHHHCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEeecccCC
Confidence 7888888777766665 889999999999999998888877644443
No 35
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.38 E-value=95 Score=30.14 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 023601 143 VVPAYDEQITELKLSVDSLEKERD 166 (280)
Q Consensus 143 ~~~~L~~qi~eLk~~ve~LEkERD 166 (280)
++..|...+.+||.+++.||+|=+
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~ 279 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIR 279 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999999999999955
No 36
>cd01786 STE50_RA Ubiquitin-like domain of STE50_RA. STE50_RA The fungal adaptor protein STE50 is an essential component of three MAPK-mediated signalling pathways, which control the mating response, invasive/filamentous growth and osmotolerance (HOG pathway), respectively. STE50 functions in cell signalling between the activated G protein and STE11. The domain architecture of STE50 includes an amino-terminal SAM (sterile alpha motif) domain in addition to the carboxy-terminal ubiquitin-like RA (RAS-associated) domain. While the SAM domain interacts with STE11, the RA domain interacts with CDC42 and RAS. Modulation of signal transduction by STE50 specifically affects the pheromone-response pathway in yeast.
Probab=20.21 E-value=73 Score=26.20 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCccc
Q 023601 28 YKVLQDVFNKLKITK 42 (280)
Q Consensus 28 fKvLQ~aF~K~~I~K 42 (280)
+|||+.|++|.+|.-
T Consensus 38 ~kVL~~Alkry~I~~ 52 (98)
T cd01786 38 EKILKNAMKRHNLND 52 (98)
T ss_pred HHHHHHHHHHcCCCh
Confidence 699999999999986
No 37
>smart00515 eIF5C Domain at the C-termini of GCD6, eIF-2B epsilon, eIF-4 gamma and eIF-5.
Probab=20.08 E-value=1e+02 Score=23.39 Aligned_cols=30 Identities=27% Similarity=0.381 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHhccC
Q 023601 171 KLRDIEILCQSPGIEHLPIVGAIKRILYATD 201 (280)
Q Consensus 171 KLRdIEiLcQe~e~e~~~~i~~I~~ILYATe 201 (280)
-|--||.+|.+.+. ..+.+..|+..||..|
T Consensus 17 ~L~ale~~~~~~~~-~~~~~~~il~~LYd~d 46 (83)
T smart00515 17 LLYAIEEFCVELEK-LIKLLPKILKSLYDAD 46 (83)
T ss_pred HHHHHHHHHHHcch-HHHHHHHHHHHHhhhc
Confidence 46778889976533 4567999999999864
No 38
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=20.05 E-value=1.2e+02 Score=28.34 Aligned_cols=27 Identities=15% Similarity=0.447 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHH--------HHHHHHHHH
Q 023601 143 VVPAYDEQITELKLSVDS--------LEKERDFYF 169 (280)
Q Consensus 143 ~~~~L~~qi~eLk~~ve~--------LEkERDFYF 169 (280)
+++.|+.+|.+|+-.+|. .++.||+|=
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~ 96 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYL 96 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666655553 567888884
Done!