Query 023601
Match_columns 280
No_of_seqs 162 out of 428
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 09:37:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r8u_A Microtubule-associated 100.0 1.1E-71 3.8E-76 513.0 5.4 208 1-211 48-260 (268)
2 4abo_I MAL3, microtubule integ 100.0 3.3E-41 1.1E-45 286.1 5.0 85 1-88 39-123 (145)
3 1wyo_A Protein EB3, microtubul 100.0 1.9E-39 6.4E-44 279.3 7.1 88 1-90 55-142 (159)
4 2qjx_A Protein BIM1; calponin 100.0 1.7E-39 5.7E-44 270.7 5.0 84 1-87 43-126 (127)
5 2qjz_A Microtubule-associated 100.0 1.9E-39 6.5E-44 269.0 5.1 85 1-87 38-122 (123)
6 3tq7_B Microtubule-associated 100.0 3.4E-29 1.2E-33 194.6 6.4 69 143-211 2-70 (82)
7 4e61_A Protein BIM1; EB1-like 99.9 3.5E-26 1.2E-30 184.9 4.2 67 141-207 17-106 (106)
8 3mtu_A Tropomyosin alpha-1 cha 99.9 7.7E-25 2.6E-29 167.4 6.8 65 144-208 11-75 (75)
9 1wyq_A Spectrin beta chain, br 90.5 0.13 4.3E-06 42.0 2.4 64 2-70 46-112 (127)
10 1bkr_A Spectrin beta chain; fi 89.6 0.12 4.1E-06 40.9 1.6 62 2-68 42-106 (109)
11 2d89_A EHBP1 protein; all alph 89.3 0.16 5.4E-06 40.8 2.1 63 2-69 48-110 (119)
12 1sh5_A Plectin 1, PLTN, PCN; a 89.1 0.099 3.4E-06 46.3 0.8 65 2-71 172-239 (245)
13 1wyl_A NEDD9 interacting prote 89.0 0.11 3.7E-06 41.6 0.9 62 2-68 46-109 (116)
14 2d87_A Smoothelin splice isofo 88.6 0.23 7.8E-06 40.5 2.6 64 2-70 46-113 (128)
15 1wjo_A T-plastin; CH domain, a 85.2 0.84 2.9E-05 37.3 4.2 67 1-67 47-113 (124)
16 2ee7_A Sperm flagellar protein 84.8 1.2 4.1E-05 36.6 4.9 67 3-70 52-120 (127)
17 2d88_A Protein mical-3; all al 84.8 0.32 1.1E-05 39.2 1.4 63 2-69 48-114 (121)
18 1bhd_A Utrophin; calponin homo 84.3 0.16 5.6E-06 40.7 -0.5 62 2-68 47-111 (118)
19 1wku_A Alpha-actinin 3; calpon 81.9 0.61 2.1E-05 41.7 2.3 64 2-70 179-246 (254)
20 3qh9_A Liprin-beta-2; coiled-c 80.7 2.3 7.9E-05 32.7 4.8 32 144-175 21-52 (81)
21 4b7l_A Filamin-B; structural p 77.0 0.35 1.2E-05 45.3 -1.0 83 2-89 176-262 (347)
22 1aoa_A T-fimbrin; actin-bindin 74.0 1 3.5E-05 40.4 1.3 63 2-64 207-273 (275)
23 1dxx_A Dystrophin; structural 73.6 0.45 1.5E-05 42.2 -1.2 63 2-68 174-239 (246)
24 2yrn_A Neuron navigator 2 isof 72.2 1.6 5.5E-05 35.0 1.9 67 2-70 58-125 (129)
25 1wyr_A RHO guanine nucleotide 68.6 2.5 8.4E-05 33.9 2.3 63 2-67 50-113 (121)
26 1pxy_A Fimbrin-like protein; c 65.5 1.3 4.4E-05 43.2 0.0 62 2-68 192-253 (506)
27 1m5i_A APC protein; coiled-coi 64.5 10 0.00034 31.2 5.1 38 144-181 9-46 (125)
28 1rt8_A Fimbrin; filamentous ac 63.6 1.7 5.8E-05 42.4 0.5 62 2-68 201-262 (513)
29 1pxy_A Fimbrin-like protein; c 62.0 3.4 0.00012 40.2 2.3 66 2-68 438-503 (506)
30 2l3g_A RHO guanine nucleotide 60.9 4.7 0.00016 32.6 2.6 49 2-53 56-105 (126)
31 2vzc_A Alpha-parvin; membrane, 58.0 7.6 0.00026 31.4 3.4 60 2-61 60-120 (131)
32 3i6x_A P195, RAS GTPase-activa 55.2 3.5 0.00012 35.7 1.0 66 2-67 85-160 (193)
33 1ci6_A Transcription factor AT 54.7 15 0.00053 26.2 4.2 32 143-174 31-62 (63)
34 3f7p_A Plectin-1; plakin, hemi 53.4 2.2 7.5E-05 39.3 -0.7 61 2-67 228-291 (296)
35 2wt7_B Transcription factor MA 50.2 18 0.00063 28.0 4.2 30 145-174 58-87 (90)
36 1aoa_A T-fimbrin; actin-bindin 46.9 9.3 0.00032 34.1 2.4 60 2-61 71-131 (275)
37 1h67_A Calponin alpha; cytoske 45.7 12 0.0004 29.1 2.5 49 2-53 39-89 (108)
38 1ujo_A Transgelin; CH domain, 45.3 11 0.00038 30.9 2.4 67 2-70 51-123 (144)
39 2wa7_A Filamin-B; disease muta 42.7 15 0.00051 32.3 3.0 62 2-68 179-241 (245)
40 1rt8_A Fimbrin; filamentous ac 40.8 11 0.00037 36.7 2.0 60 2-62 449-508 (513)
41 2zop_A Putative uncharacterize 40.4 13 0.00046 29.4 2.1 16 56-71 96-111 (114)
42 2oeb_A Hypothetical protein; u 36.9 16 0.00054 30.8 2.1 18 56-73 135-152 (155)
43 1p5s_A RAS GTPase-activating-l 35.3 13 0.00043 32.4 1.3 50 2-53 93-144 (203)
44 2qjx_A Protein BIM1; calponin 32.9 19 0.00065 29.4 1.9 18 57-74 12-29 (127)
45 2rr8_A Iqgap1 protein; F-actin 31.6 12 0.00041 32.1 0.5 68 2-69 63-140 (190)
46 1wym_A Transgelin-2; CH domain 31.4 24 0.00081 29.2 2.3 50 2-54 59-113 (155)
47 3hoc_A Filamin-A; calponin hom 31.2 13 0.00043 33.7 0.6 62 2-68 206-268 (272)
48 1p2x_A RNG2 protein, RAS GTPas 31.0 20 0.00068 29.8 1.8 50 2-53 49-100 (159)
49 1wyp_A Calponin 1; CH domain, 30.8 24 0.00081 28.6 2.2 50 2-54 53-104 (136)
50 1wyn_A Calponin-2; CH domain, 30.6 25 0.00086 28.8 2.3 50 2-54 53-104 (146)
51 3mn2_A Probable ARAC family tr 30.0 64 0.0022 23.7 4.4 50 18-68 44-95 (108)
52 1n1f_A Interleukin-19; cytokin 27.4 36 0.0012 28.7 2.8 48 16-69 107-154 (159)
53 2yy0_A C-MYC-binding protein; 26.4 1E+02 0.0034 21.4 4.5 31 141-171 18-48 (53)
54 1go4_E MAD1 (mitotic arrest de 25.9 51 0.0017 26.0 3.2 20 148-167 11-30 (100)
55 3c5t_B Exendin-4, exenatide; l 25.7 22 0.00076 22.6 0.9 9 58-66 12-20 (31)
56 2e62_A Protein AT5G25060; CWF2 24.8 30 0.001 25.1 1.5 12 170-181 16-27 (61)
57 1dip_A Delta-sleep-inducing pe 23.5 99 0.0034 23.3 4.2 26 141-166 14-39 (78)
58 2wa7_A Filamin-B; disease muta 22.4 54 0.0019 28.6 3.1 68 2-70 58-126 (245)
59 3brv_B NF-kappa-B essential mo 21.4 1.6E+02 0.0054 21.9 4.9 28 150-177 27-61 (70)
60 3ky9_A Proto-oncogene VAV; cal 21.2 53 0.0018 32.1 3.0 52 2-53 51-106 (587)
61 3hoc_A Filamin-A; calponin hom 21.2 58 0.002 29.3 3.1 68 3-71 86-154 (272)
62 1sjj_A Actinin; 3-helix bundle 20.9 19 0.00065 36.4 -0.3 64 1-69 159-223 (863)
63 1hjb_A Ccaat/enhancer binding 20.8 1.2E+02 0.0041 23.1 4.4 25 143-167 44-68 (87)
64 2v66_B Nuclear distribution pr 20.3 1.8E+02 0.0061 23.2 5.4 33 148-180 34-66 (111)
No 1
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=100.00 E-value=1.1e-71 Score=512.96 Aligned_cols=208 Identities=36% Similarity=0.583 Sum_probs=83.0
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHHhhCCCCCCCCC
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN 80 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d~n~~g~~~~YD 80 (280)
|||||||+|||+||||+|++||||++||||||++|+|+||+|+|||++|||||||||||||||||+|||+|++| .+||
T Consensus 48 md~l~P~~i~l~kVkf~a~~e~e~i~N~k~LQ~~F~k~~I~k~ipV~kLvkgk~qDNlEFlqWfkkf~d~n~~~--~~Yd 125 (268)
T 2r8u_A 48 MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG--KDYD 125 (268)
T ss_dssp HHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCC--CCCC
T ss_pred HHHHccCCCchhhccCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHHcCCC--CCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998 7999
Q ss_pred HHHhhhhcCCCCCCCcCCCCCCCCCCC---CCCCCCCCCCCCCccCCCCCCC--CCCCCCCCCCCCCchhHHHHHHHHHH
Q 023601 81 PLERRESCKGGKEASKKSASSQSTNKG---VTAAPKAQSSHNARRHDVTSVN--PTTQASKTSKPSAVVPAYDEQITELK 155 (280)
Q Consensus 81 p~~rR~~~~gg~~~~~~~~~~~~~s~~---a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~qi~eLk 155 (280)
|++||+|...|...+...+....+.++ +++++.+++ ..+++...+..+ +++.......+..++.++.+|+++||
T Consensus 126 ~~~~R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~lk 204 (268)
T 2r8u_A 126 PVAARQGQETAVAPSLVAPALNKPKKPLTSSSAAPQRPI-STQRTAAAPKAGPGVVRKNPGVGNGDDEAAELMQQVNVLK 204 (268)
T ss_dssp HHHHTC--------------------------------------------------------------------------
T ss_pred HHHHhcCCCCCCCCCCCcccccCCCCccccccCCCCCCC-cccccCCCCCCCCCCCCCCcccccccHHHHHHHHHHHHHH
Confidence 999998765543221111100000000 000000000 000000000000 00000011123445788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHhccCCCCccchhHH
Q 023601 156 LSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQ 211 (280)
Q Consensus 156 ~~ve~LEkERDFYF~KLRdIEiLcQe~e~e~~~~i~~I~~ILYATeeg~~~~~e~~ 211 (280)
++|++|||||||||+||||||||||+++.++.+++++|++|||||||||++|+|++
T Consensus 205 ~~v~~lEkERDFYF~KLRdIEilcQe~~~~~~~~~~~I~~ILYaTeegf~~p~~~~ 260 (268)
T 2r8u_A 205 LTVEDLEKERDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPDEGG 260 (268)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccccCCCCCCCCC
Confidence 99999999999999999999999999988888899999999999999999988754
No 2
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.3e-41 Score=286.09 Aligned_cols=85 Identities=41% Similarity=0.704 Sum_probs=82.3
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHHhhCCCCCCCCC
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN 80 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d~n~~g~~~~YD 80 (280)
||||| |+|||+||||+|++||||++||||||++|+|+||+|+|||++|||||||||||||||||+|||+|+++ .+||
T Consensus 39 mD~lf-g~i~l~kVkf~a~~e~e~i~NfKlLQ~~F~k~~I~k~ipV~kLvKgk~QDNlEFlQWfkkf~d~n~~~--~~YD 115 (145)
T 4abo_I 39 FDSIY-QDIPLKKVNFECNNEYQYINNWKVLQQVFLKKGIDKVVDPERLSRCKMQDNLEFVQWAKRFWDQYYPG--GDYD 115 (145)
T ss_dssp HHHHH-CCSCTTTSCSSCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCS--SCCC
T ss_pred HHHHh-cCcchhhcccCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccchHhHHHHHHHHHHHHHhcCCC--CCCC
Confidence 79999 99999999999999999999999999999999999999999999999999999999999999999997 7999
Q ss_pred HHHhhhhc
Q 023601 81 PLERRESC 88 (280)
Q Consensus 81 p~~rR~~~ 88 (280)
|++||++.
T Consensus 116 ~~~~R~g~ 123 (145)
T 4abo_I 116 ALARRGNR 123 (145)
T ss_dssp HHHHHTCC
T ss_pred HHHhcCCC
Confidence 99999643
No 3
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=279.33 Aligned_cols=88 Identities=47% Similarity=0.767 Sum_probs=84.7
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHHhhCCCCCCCCC
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN 80 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d~n~~g~~~~YD 80 (280)
||+||||+|||+||||+++.||||++|||+||++|+|+||+|+|||++|||||||||||||||||+|||+|+++ .+||
T Consensus 55 md~L~PgsV~l~KVkf~a~~e~e~~~N~k~lQ~af~k~gV~k~ipV~kLvkgk~qdNlEFlqWfk~f~d~n~~~--~~Yd 132 (159)
T 1wyo_A 55 MDMLFPGCVHLRKVKFQAKLEHEYIHNFKVLQAAFKKMGVDKIIPVEKLVKGKFQDNFEFIQWFKKFFDANYDG--KDYN 132 (159)
T ss_dssp HHHHSTTSSCTTSCCTTCCSSHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTTCSHHHHHHHHHHHHHHHTTCCS--CCCC
T ss_pred HHHHccCCCcHhhhccCCCChHHHHHHHHHHHHHHHHcCCCCccCHHHHhcCCchhHHHHHHHHHHHHHHcCCC--CCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998 7999
Q ss_pred HHHhhhhcCC
Q 023601 81 PLERRESCKG 90 (280)
Q Consensus 81 p~~rR~~~~g 90 (280)
|++||+++..
T Consensus 133 ~~~~R~~~~~ 142 (159)
T 1wyo_A 133 PLLARQGQDV 142 (159)
T ss_dssp TTGGGCCCTT
T ss_pred HHHHhCCCCC
Confidence 9999976543
No 4
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-39 Score=270.75 Aligned_cols=84 Identities=42% Similarity=0.708 Sum_probs=81.7
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHHhhCCCCCCCCC
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN 80 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d~n~~g~~~~YD 80 (280)
||+|| |+|||+||||+|++||||++||||||++|+|++|+|+|||++|||||||||||||||||+|||+||+| .+||
T Consensus 43 ~d~l~-g~v~l~kVkf~a~~e~e~~~N~k~LQ~~f~k~~I~k~ipV~kLvKgrfQDNlEFlQWfkkf~d~n~~g--~~YD 119 (127)
T 2qjx_A 43 MDSIY-GDLPMNRVKFNATAEYEFQTNYKILQSCFSRHGIEKTVYVDKLIRCKFQDNLEFLQWLKKHWIRHKDE--SVYD 119 (127)
T ss_dssp HHHHH-CCSCGGGSCTTCCSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTTCHHHHHHHHHHHHHHHHHHCCS--SCCC
T ss_pred Hhhhc-cccCccccCCCCCCHHHHHHHHHHHHHHHHHcCCCCccCHHHHhccCchhHHHHHHHHHHHHHhcCCC--CCCC
Confidence 79999 78999999999999999999999999999999999999999999999999999999999999999997 7999
Q ss_pred HHHhhhh
Q 023601 81 PLERRES 87 (280)
Q Consensus 81 p~~rR~~ 87 (280)
|++||++
T Consensus 120 a~~~R~~ 126 (127)
T 2qjx_A 120 PDARRKY 126 (127)
T ss_dssp HHHHTTT
T ss_pred HHHhhcc
Confidence 9999965
No 5
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=100.00 E-value=1.9e-39 Score=269.00 Aligned_cols=85 Identities=44% Similarity=0.803 Sum_probs=83.0
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHHhhCCCCCCCCC
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCDSVNGGLIHSYN 80 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d~n~~g~~~~YD 80 (280)
||+||||+|||+||||+++.||||++|||+||++|+|+||+|+|||++|||||||||||||||||+|||+|++| .+||
T Consensus 38 md~l~Pg~v~l~KVkf~a~~e~e~~~N~k~lq~af~k~gV~k~i~v~kLvkgk~qdnleflqW~k~f~d~n~~~--~~Yd 115 (123)
T 2qjz_A 38 MDMLFPGSIALKKVKFQAKLEHEYIQNFKILQAGFKRMGVDKIIPVDKLVKGKFQDNFEFVQWFKKFFDANYDG--KDYD 115 (123)
T ss_dssp HHHHSTTSSCGGGCCTTCCSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHTTCCHHHHHHHHHHHHHHHHHHCCC--CCCC
T ss_pred HHHHccCCCcHHHhccCCCChHHHHHHHHHHHHHHHHcCCCCccCHHHHHcCCchhHHHHHHHHHHHHHHcCCC--CCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998 7999
Q ss_pred HHHhhhh
Q 023601 81 PLERRES 87 (280)
Q Consensus 81 p~~rR~~ 87 (280)
|++||+|
T Consensus 116 ~~~~R~~ 122 (123)
T 2qjz_A 116 PVAARQG 122 (123)
T ss_dssp HHHHTSC
T ss_pred HHHhhCc
Confidence 9999964
No 6
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=99.95 E-value=3.4e-29 Score=194.61 Aligned_cols=69 Identities=45% Similarity=0.790 Sum_probs=50.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHhccCCCCccchhHH
Q 023601 143 VVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVAEAQ 211 (280)
Q Consensus 143 ~~~~L~~qi~eLk~~ve~LEkERDFYF~KLRdIEiLcQe~e~e~~~~i~~I~~ILYATeeg~~~~~e~~ 211 (280)
++.+|++|+++|+++|++|||||||||+||||||+|||+++.++.+++++|++|||||++||.+|++.+
T Consensus 2 ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ~~e~~~~~~~~~I~~ILYaTeegf~~p~~~~ 70 (82)
T 3tq7_B 2 QILELNQQLVDLKLTVDGLEKERDFYFSKLRDIELICQEHESENSPVISGIIGILYATEEGFAPPEDDE 70 (82)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHTCCC----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHhccccCCCCCCccc
Confidence 467899999999999999999999999999999999999887777899999999999999999887643
No 7
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.5e-26 Score=184.90 Aligned_cols=67 Identities=39% Similarity=0.590 Sum_probs=58.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----------------------CChhHHHHHHHHH
Q 023601 141 SAVVPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGI-----------------------EHLPIVGAIKRIL 197 (280)
Q Consensus 141 ~~~~~~L~~qi~eLk~~ve~LEkERDFYF~KLRdIEiLcQe~e~-----------------------e~~~~i~~I~~IL 197 (280)
.+++.+|++++++|++++++||+||||||+||||||+|||+... +..+++++|++||
T Consensus 17 ~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~kIq~IL 96 (106)
T 4e61_A 17 QETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQDLINEGVYKFNDETITGHGNGNGGALLRFVKKVESIL 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999997411 1247899999999
Q ss_pred hccCCCCccc
Q 023601 198 YATDDDASVV 207 (280)
Q Consensus 198 YATeeg~~~~ 207 (280)
|||+|||++|
T Consensus 97 YaTeeGFe~p 106 (106)
T 4e61_A 97 YATAEGFEMN 106 (106)
T ss_dssp HHHHHTSCC-
T ss_pred hccccccCCC
Confidence 9999999865
No 8
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=99.91 E-value=7.7e-25 Score=167.38 Aligned_cols=65 Identities=32% Similarity=0.529 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHhccCCCCccch
Q 023601 144 VPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQSPGIEHLPIVGAIKRILYATDDDASVVA 208 (280)
Q Consensus 144 ~~~L~~qi~eLk~~ve~LEkERDFYF~KLRdIEiLcQe~e~e~~~~i~~I~~ILYATeeg~~~~~ 208 (280)
++.|..+..++..++++||+||||||+||||||+|||+++.+..+++++|++|||||++||.+|+
T Consensus 11 mqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ILYat~~~f~~p~ 75 (75)
T 3mtu_A 11 MQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVIPD 75 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHHHHHCBTTBCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCcCCCCCC
Confidence 45688899999999999999999999999999999999988778899999999999999998874
No 9
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens}
Probab=90.47 E-value=0.13 Score=41.95 Aligned_cols=64 Identities=11% Similarity=0.213 Sum_probs=45.8
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHH-hcCcccccccccccccCC--cccHHHHHHHHHHHHh
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFN-KLKITKHIEVNKLIKGRP--LDNLEFMQWMKRYCDS 70 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~-K~~I~K~IpVekLvkgk~--qdNlEFlQWfkkf~d~ 70 (280)
|.+.|+.|++..++- .+-++|++..-+... ++||.+.+..+.++.++. +-++-|+.-|+.+|..
T Consensus 46 h~~~P~lid~~~l~~-----~~~~~n~~~af~~Ae~~Lgi~~ll~~eDv~~~~pDeksimtYvs~l~~~~~~ 112 (127)
T 1wyq_A 46 HKHRPDLLDFESLKK-----CNAHYNLQNAFNLAEKELGLTKLLDPEDVNVDQPDEKSIITYVATYYHYFSK 112 (127)
T ss_dssp HHHCTTTCCTTTSCS-----SCCHHHHHHHHHHHHHTTCCCCCSCTTTSCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCcCcCCHHHhCc-----CCHHHHHHHHHHHHHHHcCCCcccCHHHhccCCCcHHHHHHHHHHHHHHhhc
Confidence 457899998888754 344667665555554 899999999999887764 4566677666666644
No 10
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=89.56 E-value=0.12 Score=40.88 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=42.3
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHH-HhcCcccccccccccccCC--cccHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVF-NKLKITKHIEVNKLIKGRP--LDNLEFMQWMKRYC 68 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF-~K~~I~K~IpVekLvkgk~--qdNlEFlQWfkkf~ 68 (280)
+.+.|+.|++..++ ..+-++|++..=++. +++||.+.+..+.++.++. +-++-|+..|+.+|
T Consensus 42 h~~~P~lid~~~l~-----~~~~~~n~~~af~~Ae~~lgi~~ll~~eDv~~~~pD~ksi~tYvs~~~~~f 106 (109)
T 1bkr_A 42 HKHRPDLIDFDKLK-----KSNAHYNLQNAFNLAEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYF 106 (109)
T ss_dssp HHHCGGGCCGGGCC-----TTCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHCcCCCCHHHcC-----cCCHHHHHHHHHHHHHHHcCCCccCCHHHccCCCCcHHHHHHHHHHHHHHh
Confidence 45678888877765 344566665544444 4899999999999887764 44566666666655
No 11
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.34 E-value=0.16 Score=40.80 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=44.4
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCD 69 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d 69 (280)
|.+.|+.|++..++- .+-++|++..=++.+++||.+.+..+.++.+..-|-.-.|.++-.||.
T Consensus 48 ~~~~P~lid~~~l~~-----~~~~~n~~~af~~a~~LGi~~ll~peDi~~~~~pD~ksvmtYvs~l~~ 110 (119)
T 2d89_A 48 HHFRPDLIDYKSLNP-----QDIKENNKKAYDGFASIGISRLLEPSDMVLLAIPDKLTVMTYLYQIRA 110 (119)
T ss_dssp HHHCTTTSCGGGCCT-----TCSHHHHHHHHHHHHHHTCCCCSCHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHCcCcCChhhhcc-----cCHHHHHHHHHHHHHHhCCCcccCHHHHhccCCCcHHHHHHHHHHHHH
Confidence 567899888777654 345667765544458999999999999998865555555555555554
No 12
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A
Probab=89.11 E-value=0.099 Score=46.26 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=50.0
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHh-cCcccccccccccccCC--cccHHHHHHHHHHHHhh
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNK-LKITKHIEVNKLIKGRP--LDNLEFMQWMKRYCDSV 71 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K-~~I~K~IpVekLvkgk~--qdNlEFlQWfkkf~d~n 71 (280)
|.+.|+.||+..+.- .+..+|.+..-+...+ +||.+.+..+.++.++. .-++-|+..|+.+|-.-
T Consensus 172 ~~~~P~~i~~~~l~~-----~~~~~n~~~a~~~a~~~lGi~~~l~peDi~~~~pd~k~i~tyva~l~~~~~~~ 239 (245)
T 1sh5_A 172 HRHKPMLIDMNKVYR-----QTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDAMPRV 239 (245)
T ss_dssp HTTCTTTCCHHHHHH-----SCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHHHCC--
T ss_pred HHHCCCCCCHHHccc-----CCHHHHHHHHHHHHHHhCCCCccCCHHHhccCCCcHHHHHHHHHHHHHHcCCC
Confidence 567899999887653 3567888877777765 99999999999986654 77888888888876443
No 13
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=89.01 E-value=0.11 Score=41.60 Aligned_cols=62 Identities=15% Similarity=0.260 Sum_probs=45.3
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHh-cCccccccccccccc-CCcccHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNK-LKITKHIEVNKLIKG-RPLDNLEFMQWMKRYC 68 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K-~~I~K~IpVekLvkg-k~qdNlEFlQWfkkf~ 68 (280)
+.+.|+.|++..++- .+-++|++..=++.+| +||.+.+..+.++.+ ..+-++-|+.-|+++|
T Consensus 46 h~~~P~lid~~~l~~-----~~~~~n~~~af~~Ae~~lgi~~lL~peD~~~~~d~ksv~tYvs~l~~~~ 109 (116)
T 1wyl_A 46 YRLQPGLLEPSELQG-----LGALEATAWALKVAENELGITPVVSAQAVVAGSDPLGLIAYLSHFHSAF 109 (116)
T ss_dssp HHHCTTSCCCSSGGG-----CCHHHHHHHHHHHHHHTTCCCCCSCHHHHHHTSCHHHHHHHHHHHHHHS
T ss_pred HHHCcCCCCHHHhcc-----CCHHHHHHHHHHHHHHHcCCccccCHHHHhcCCchhHHHHHHHHHHHHc
Confidence 456799888777653 4566777776666666 999999999999988 4445666776666655
No 14
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=88.60 E-value=0.23 Score=40.51 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=45.1
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHh-cCcccccccccccccCCc---ccHHHHHHHHHHHHh
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNK-LKITKHIEVNKLIKGRPL---DNLEFMQWMKRYCDS 70 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K-~~I~K~IpVekLvkgk~q---dNlEFlQWfkkf~d~ 70 (280)
|.+.|+.|++..++ ..+-++|++..=++..+ +||.+.+..+.++.+..- -++-|+..|+.+|-.
T Consensus 46 h~~~P~lid~~~l~-----~~~~~~n~~~af~~Ae~~lgip~lL~peD~v~~~~pD~ksvmtYvs~l~~~~~~ 113 (128)
T 2d87_A 46 HNFFPEAFDYGQLS-----PQNRRQNFEVAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQ 113 (128)
T ss_dssp HHHCTTTSCSTTSC-----SSCHHHHHHHHHHHHHHHHCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCcCcCCHHHcC-----ccCHHHHHHHHHHHHHHcCCCCcccCHHHHhccCCccHHHHHHHHHHHHHHHhh
Confidence 45679988888764 34566777665555555 899999999999988744 455666666665543
No 15
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=85.16 E-value=0.84 Score=37.32 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=55.1
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHH
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRY 67 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf 67 (280)
+|.|-|+.|+..-|+=..-++.|...|.+..=+.-.|+||...+-.|.++.|+..-++-|+.=|..+
T Consensus 47 l~~i~P~~vd~~lv~~~~L~~~d~~~Na~~ais~ArklG~~~~l~pEDIve~~pK~ilt~va~l~~~ 113 (124)
T 1wjo_A 47 IDAIQPGCINYDLVKSGNLTEDDKHNNAKYAVSMARRIGARVYALPEDLVEVKPKMVMTVFACLMGR 113 (124)
T ss_dssp HHHHSTTSCCTTTSCCSSCCHHHHHHHHHHHHHHHHHTCCSCCCCHHHHHHTCTTTTTHHHHHHHHH
T ss_pred HHHHCcCccCHHHhcCCCCCHHHHHHHHHHHHHHHHHcCCCcccCHHHHhcCcchhhHHHHHHHHHH
Confidence 3567799998887765554789999999987777799999999999999999999999988544433
No 16
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.82 E-value=1.2 Score=36.57 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=53.5
Q ss_pred ccCCCCccCcccccccCChHHHHHhHHHH-HHHHHhcCccccc-ccccccccCCcccHHHHHHHHHHHHh
Q 023601 3 ATHPGMVPMHKVNFDAKSEYEMIQNYKVL-QDVFNKLKITKHI-EVNKLIKGRPLDNLEFMQWMKRYCDS 70 (280)
Q Consensus 3 ~lfPg~Vpl~KVkF~a~~e~e~i~NfKvL-Q~aF~K~~I~K~I-pVekLvkgk~qdNlEFlQWfkkf~d~ 70 (280)
..||..|.|+.-. ++..-.-.+.||.+| +.+|+|+|+.-.- .|+.++.|+...=--+|.=+|.+...
T Consensus 52 ~y~Pk~Vdlh~y~-~~~S~~~K~~NW~~ln~kvl~kl~~~l~~~~i~~i~~~~~Gaie~lL~~L~~~l~~ 120 (127)
T 2ee7_A 52 FYFPKMVEMHNYV-PANSLQQKLSNWGHLNRKVLKRLNFSVPDDVMRKIAQCAPGVVELVLIPLRQRLEE 120 (127)
T ss_dssp HHCTTTCCCSSCC-CCSSHHHHHHHHHHHHHHTTGGGTCCCCHHHHHHHHTTCTTTTHHHHHHHHHHHHH
T ss_pred HHCcCcccccccC-CCCcHHHHHHhHHHHHHHHHHHcCCCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3588889988533 356667889999999 5999999997543 38999999998888888888877654
No 17
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A
Probab=84.75 E-value=0.32 Score=39.17 Aligned_cols=63 Identities=10% Similarity=0.178 Sum_probs=44.0
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHH-hcCcccccccccccccC---CcccHHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFN-KLKITKHIEVNKLIKGR---PLDNLEFMQWMKRYCD 69 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~-K~~I~K~IpVekLvkgk---~qdNlEFlQWfkkf~d 69 (280)
+.+.|+.|++..++- .+-++|++.-=++.. ++||.+.+..+.++.+. -+-++-|+.-|+++|.
T Consensus 48 h~~~P~lid~~~l~~-----~~~~~n~~~af~~Ae~~lgi~~lL~peD~~~~~~pD~ksimtYvs~l~~~~~ 114 (121)
T 2d88_A 48 HRYRPDLIDFDSLDE-----QNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFK 114 (121)
T ss_dssp HHHCTTTSCTTTSCT-----TCHHHHHHHHHHHHHHHTCCCCSSCHHHHHHSSCCCHHHHHHHHHHHHHHHS
T ss_pred HHhCcCcCCHHHcCc-----cCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHcc
Confidence 456788887777653 345677776555554 69999999999999753 3456777777776663
No 18
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1
Probab=84.26 E-value=0.16 Score=40.72 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=39.9
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHH-HHHHHHhcCcccccccccccccCC--cccHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKV-LQDVFNKLKITKHIEVNKLIKGRP--LDNLEFMQWMKRYC 68 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKv-LQ~aF~K~~I~K~IpVekLvkgk~--qdNlEFlQWfkkf~ 68 (280)
|.+.|+.|++..++- .+-++|++. ++.|-+++||.+.+..+.++.++. +-++-|+..|+++|
T Consensus 47 h~~~P~lid~~~l~~-----~~~~~n~~~af~~Ae~~lgi~~ll~~eDv~~~~pD~ksvmtYvs~l~~~~ 111 (118)
T 1bhd_A 47 HRHKPDLFSWDKVVK-----MSPIERLEHAFSKAQTYLGIEKLLDPEDVAVRLPDKKSIIMYLTSLFEVL 111 (118)
T ss_dssp HHHCGGGSCHHHHHH-----SCHHHHHHHHHHHHHHHHCCCCCSCHHHHHTSCCCHHHHHHHHHHHHHHC
T ss_pred HHHCcCcCCHHHhCc-----CCHHHHHHHHHHHHHHHcCCCcccCHHHhhcCCCcHHHHHHHHHHHHHHC
Confidence 456788887777652 334556544 333445999999999999987754 34555555555443
No 19
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K
Probab=81.94 E-value=0.61 Score=41.66 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=48.6
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHh-cCcccccccccccccC-C--cccHHHHHHHHHHHHh
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNK-LKITKHIEVNKLIKGR-P--LDNLEFMQWMKRYCDS 70 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K-~~I~K~IpVekLvkgk-~--qdNlEFlQWfkkf~d~ 70 (280)
|.+.|+.|++..++ ..+-..|++..-++..| +||.+.+..+.++.|. . .-++-|+..|+.+|-.
T Consensus 179 ~~~~P~~id~~~l~-----~~~~~~n~~~a~~~A~~~lGi~~~l~peDiv~~~~pD~k~imtyva~l~~~~~~ 246 (254)
T 1wku_A 179 HRHRPDLIDYAKLR-----KDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCFYHAFAG 246 (254)
T ss_dssp HHHCTTSCCGGGCC-----TTCHHHHHHHHHHHHHHHSCCCCCSCHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCcccccccC-----cCCHHHHHHHHHHHHHHHcCCCCcCCHHHHhccCCCcHHHHHHHHHHHHHHhhc
Confidence 45779988766554 45677888776666665 9999999999998874 3 5678888888888754
No 20
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=80.74 E-value=2.3 Score=32.66 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023601 144 VPAYDEQITELKLSVDSLEKERDFYFAKLRDI 175 (280)
Q Consensus 144 ~~~L~~qi~eLk~~ve~LEkERDFYF~KLRdI 175 (280)
.+.|-++|.+|+..|+.||.||--|=-||+-=
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsT 52 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKAT 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35789999999999999999999999999875
No 21
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=77.02 E-value=0.35 Score=45.32 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=52.2
Q ss_pred CccCCCCcc-CcccccccCChHHHHHhHHH-HHHHHHhcCcccccccccccccCC--cccHHHHHHHHHHHHhhCCCCCC
Q 023601 2 DATHPGMVP-MHKVNFDAKSEYEMIQNYKV-LQDVFNKLKITKHIEVNKLIKGRP--LDNLEFMQWMKRYCDSVNGGLIH 77 (280)
Q Consensus 2 D~lfPg~Vp-l~KVkF~a~~e~e~i~NfKv-LQ~aF~K~~I~K~IpVekLvkgk~--qdNlEFlQWfkkf~d~n~~g~~~ 77 (280)
|.+.||.++ +..+ ...+-++|++. ++-|-+++||.+.+..+.++.++. +--+-|+.+|++++-.-......
T Consensus 176 ~~~~P~~~~d~~~l-----~~~~~~~n~~~Af~~Ae~~lGip~ll~peDi~~~~pDeksimtYvs~~~~~~~~~~~~l~~ 250 (347)
T 4b7l_A 176 DSCAPGLCPDWESW-----DPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEHSVMTYLSQFPKAKLKPGAPLKP 250 (347)
T ss_dssp HHHSTTSSTTGGGS-----CTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCTTCCHHHHHHHHTTGGGCCCCTTCCCCC
T ss_pred HHhCCccccchhhc-----CcCCHHHHHHHHHHHHHHhcCCCcccCHHHcCCCCCChhHHHHHHHHHhhhccCccccccc
Confidence 566788774 4433 44566778775 444555699999999999998876 23344555555443222222234
Q ss_pred CCCHHHhhhhcC
Q 023601 78 SYNPLERRESCK 89 (280)
Q Consensus 78 ~YDp~~rR~~~~ 89 (280)
.+||...|...+
T Consensus 251 k~~pskv~a~Gp 262 (347)
T 4b7l_A 251 KLNPKKARAYGR 262 (347)
T ss_dssp SCCGGGCEEESG
T ss_pred cccccceeEEec
Confidence 789987776544
No 22
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=74.01 E-value=1 Score=40.43 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=49.7
Q ss_pred CccCCCCccCc----ccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHH
Q 023601 2 DATHPGMVPMH----KVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWM 64 (280)
Q Consensus 2 D~lfPg~Vpl~----KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWf 64 (280)
+.+.|+.+|+. -+.|..-.+.+.++|.+..=+.-+++||.+.+..+.++.++..-++-|+.-+
T Consensus 207 ~~~~P~~~~~~~~~l~~~~~~~~~~~~~~n~~~a~~~A~~lGi~~~l~peDi~~~~~k~i~tyva~L 273 (275)
T 1aoa_A 207 NQIAPKGQKEGEPRIDINMSGFNETDDLKRAESMLQQADKLGCRQFVTPADVVSGNPKLNLAFVANL 273 (275)
T ss_dssp HHHSCCSCSSSCCCCCCCCTTTTCSSHHHHHHHHHHHHTTTTCCCSCCHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCCccccccccccccccCCCccCHHHHHHHHHHHHHHcCCCCcCCHHHcCCCChhHHHHHHHHH
Confidence 45678877764 3567777778889999887777789999999999999999887777776544
No 23
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A
Probab=73.57 E-value=0.45 Score=42.17 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=44.7
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHH-HHHHHHhcCcccccccccccccCC--cccHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKV-LQDVFNKLKITKHIEVNKLIKGRP--LDNLEFMQWMKRYC 68 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKv-LQ~aF~K~~I~K~IpVekLvkgk~--qdNlEFlQWfkkf~ 68 (280)
|.+.|+.|++..+. .+.+-.+|++. ++.|-+++||.+.+..+.++.++. .-++-|+..|+.+|
T Consensus 174 ~~~~P~li~~~~~~----~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~~~pD~k~i~tyva~l~~~~ 239 (246)
T 1dxx_A 174 HSHRPDLFDWNSVV----SQQSATQRLEHAFNIARYQLGIEKLLDPEDVDTTYPDKKSILMYITSLFQVL 239 (246)
T ss_dssp HHHCGGGSCHHHHH----TCCCHHHHHHHHHHHHHHTTCCCCCCCHHHHSSSSCCHHHHHHHHHHHHTTS
T ss_pred HHHCcCccchhhhc----ccCCHHHHHHHHHHHHHHhCCCCccCCHHHhhcCCCcHHHHHHHHHHHHHHc
Confidence 45678888777653 11233456544 344445899999999999999988 78888888777654
No 24
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.25 E-value=1.6 Score=34.98 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=54.7
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCccc-ccccccccccCCcccHHHHHHHHHHHHh
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITK-HIEVNKLIKGRPLDNLEFMQWMKRYCDS 70 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K-~IpVekLvkgk~qdNlEFlQWfkkf~d~ 70 (280)
+.|-|+.|+ +++-.++.....++|....-++++..||.. .|-.+.++.|...--|-++--+-+||++
T Consensus 58 e~L~~~~l~--~~~~~p~~~~~~~eNv~~aL~~~~~~gv~~~~i~~~DI~dgn~~~iL~Llw~L~r~~q~ 125 (129)
T 2yrn_A 58 QVVANEKIE--DINGCPKNRSQMIENIDACLNFLAAKGINIQGLSAEEIRNGNLKAILGLFFSLSRYKQQ 125 (129)
T ss_dssp HHHTTCCCT--TCCSSCCSTTHHHHHHHHHHHHHHHHTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred HHHhcCCcc--cccCCCCcHHHHHHHHHHHHHHHHHhCCcccCCChhhhhcCCHhHHHHHHHHHHHHHhh
Confidence 456788877 666557788999999999999999999985 5788889999988888888667777764
No 25
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=68.64 E-value=2.5 Score=33.92 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=42.3
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCccc-HHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDN-LEFMQWMKRY 67 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdN-lEFlQWfkkf 67 (280)
..|.||+|+ ||+-.+...+.+..|....-++.+++|++ .+....|..||-... +.=|..+.++
T Consensus 50 N~l~Pg~i~--ki~~~~~~~f~~~eNI~~FL~a~~~~g~~-~F~~~DL~e~kn~~~V~~cL~aL~~~ 113 (121)
T 1wyr_A 50 NRLMPGSVE--KFCLDPQTEADCINNINDFLKGCATLQVE-IFDPDDLYSGVNFSKVLSTLLAVNKA 113 (121)
T ss_dssp HHHSTTCCS--CCCSSCCSHHHHHHHHHHHHHHHHHHTCC-CCCHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHhCCCCCC--cCCCCCcchHHHHHHHHHHHHHHHHcCCC-ccCHHHHHcCCCHHHHHHHHHHHHHH
Confidence 457899888 67655667788888998888888888884 466666777653222 2334444444
No 26
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=65.53 E-value=1.3 Score=43.16 Aligned_cols=62 Identities=8% Similarity=0.179 Sum_probs=47.7
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYC 68 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~ 68 (280)
+.+.|+.|++..+ .+.+..+|++..=+..+++||.+.+..+.++.|+..-++-|+.-|+.+|
T Consensus 192 ~~~~P~~i~~~~l-----~~~~~~~n~~~a~~~a~~lGi~~~l~peDi~~~~~k~v~tyva~l~~~~ 253 (506)
T 1pxy_A 192 NVLAPEHCDPATL-----DAKDPLERAELVLSHAERMNCKRYLTAEEIVEGSSTLNLAFVAQIFHER 253 (506)
T ss_dssp HHHCGGGCCGGGG-----GCCSHHHHHHHHHHHHHHTTCCCCCCHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCccccccccC-----CcCCHHHHHHHHHHHHHHcCCCCcCCHHHHhcCChhHHHHHHHHHhhhc
Confidence 4567887766544 3567889999877777899999999999999998877777776555554
No 27
>1m5i_A APC protein; coiled-coil, antitumor protein; 2.00A {Homo sapiens} SCOP: h.4.13.1
Probab=64.53 E-value=10 Score=31.18 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023601 144 VPAYDEQITELKLSVDSLEKERDFYFAKLRDIEILCQS 181 (280)
Q Consensus 144 ~~~L~~qi~eLk~~ve~LEkERDFYF~KLRdIEiLcQe 181 (280)
+++|..+-.-|-..++-=||||+.||+.|+.+.-=..+
T Consensus 9 leeL~rer~~Ll~EieKEekek~wyysqlq~l~kRi~~ 46 (125)
T 1m5i_A 9 LEELEKERSLLLADLDKEEKEKDWYYAQLQNLTKRIDS 46 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Confidence 45777777777778889999999999999987765544
No 28
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=63.64 E-value=1.7 Score=42.44 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=48.2
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYC 68 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~ 68 (280)
+.+.|+.+++. +-.+.+..+|++..=+..+++||.+.+..+.++.|...-++-|+.-|+.+|
T Consensus 201 ~~~~P~~i~~~-----~l~~~~~~~n~~~a~~~a~~lgi~~~l~peDi~~~~~k~il~yva~l~~~~ 262 (513)
T 1rt8_A 201 NQLAPELCSRA-----PLQTTDVLQRAEQVLQNAEKLDCRKYLTPTAMVAGNPKLNLAFVAHLFNTH 262 (513)
T ss_dssp HHHCTTTCCSG-----GGGCCCHHHHHHHHHHHHHTTTCCCSCCHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHCccccccC-----CCCccCHHHHHHHHHHHHHHcCCCccCCHHHhcCCCHHHHHHHHHHHHhhh
Confidence 45778887754 344557788999888888999999999999999998877777775444443
No 29
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B
Probab=62.00 E-value=3.4 Score=40.17 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=48.5
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYC 68 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~ 68 (280)
|.+.|+.|++..+.-. .++.+..+|.+..=++..++||.+.+..+.++.+.-.-.+-|+.-|+.++
T Consensus 438 ~~~~P~li~~~~l~~~-~s~~~~~~N~~~a~~~a~~lGi~~~l~peDi~~~d~ksi~tyv~~l~~~~ 503 (506)
T 1pxy_A 438 WAVEPRVVNWNLVTKG-ETDDEKRLNATYIVSVARKLGCSVFLLPEDIVEVNQKMILILTASIMYWS 503 (506)
T ss_dssp HHHCGGGCCTTSCCCS-CSHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhCCCeeehhhcccC-CCchhHHHHHHHHHHHHHHcCCCCcCCHHHccCCChhHHHHHHHHHHHHH
Confidence 4667998888876543 25668889988755555899999999999999886655666665555543
No 30
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}
Probab=60.91 E-value=4.7 Score=32.61 Aligned_cols=49 Identities=24% Similarity=0.421 Sum_probs=37.8
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHh-cCcccccccccccccC
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNK-LKITKHIEVNKLIKGR 53 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K-~~I~K~IpVekLvkgk 53 (280)
..|.||+|+ ||+-.+...+.+..|.....++.++ +|++ .+....|..||
T Consensus 56 N~l~Pg~i~--kI~~~~~~~f~~~eNI~~FL~a~~~~~g~~-lF~t~DL~e~k 105 (126)
T 2l3g_A 56 ERLLPGTIE--KVYPEPRSESECLSNIREFLRGCGASLRLE-TFDANDLYQGQ 105 (126)
T ss_dssp HHHSTTCCS--CCCSSCCSHHHHHHHHHHHHHHHHHTSCCC-CCCHHHHHTTS
T ss_pred HHhCCCCCC--ccCCCCCcchHHHHHHHHHHHHHHHhCCCC-ccCHHHHHhCC
Confidence 457899998 7765566689999999999999999 9874 45666667665
No 31
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*
Probab=58.04 E-value=7.6 Score=31.38 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=51.6
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCccc-ccccccccccCCcccHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITK-HIEVNKLIKGRPLDNLEFM 61 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K-~IpVekLvkgk~qdNlEFl 61 (280)
+.|-|+.+|+++++-.++.....++|..+-=+.++..||.. .|--+.++.|...-.|-++
T Consensus 60 e~ls~~~~~~~~~~~~p~~r~~kieNv~~aL~~lk~~gi~l~~I~~~DIvdGn~kliLgLi 120 (131)
T 2vzc_A 60 GLLEGYFVPLHSFFLTPDSFEQKVLNVSFAFELMQDGGLEKPKPRPEDIVNCDLKSTLRVL 120 (131)
T ss_dssp HHHTTCCCCTTSSCSSCCSHHHHHHHHHHHHHHHHHTTCCCCSSCHHHHHTTCHHHHHHHH
T ss_pred HHhcCCCCCHHHhcCCCCcHHHHHHHHHHHHHHHHHcCCCcCCCCHHHhhCCCHHhHHHHH
Confidence 34567889999998888999999999999999999999985 6888889999877777777
No 32
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens}
Probab=55.24 E-value=3.5 Score=35.75 Aligned_cols=66 Identities=11% Similarity=0.217 Sum_probs=44.5
Q ss_pred CccCCCCccCcccc------cc-cCChHHHHHhHHHHHHHHHhcCcccc--cccccccccC-CcccHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVN------FD-AKSEYEMIQNYKVLQDVFNKLKITKH--IEVNKLIKGR-PLDNLEFMQWMKRY 67 (280)
Q Consensus 2 D~lfPg~Vpl~KVk------F~-a~~e~e~i~NfKvLQ~aF~K~~I~K~--IpVekLvkgk-~qdNlEFlQWfkkf 67 (280)
..|.||+||++||. |+ .+..+-+..|....-.+.+++||... +....|..|+ +.--+.=|.++-++
T Consensus 85 N~l~Pg~vp~kkI~~~~~~~~~~~~~~F~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~V~~cL~aL~~~ 160 (193)
T 3i6x_A 85 NFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLY 160 (193)
T ss_dssp HHHCTTTCCGGGSTTTTCHHHHHSCCCGGGHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCCccccCCcccccccCcccchHHHHHHHHHHHHHHHcCCCcccCCCcHHHhcCCCHHHHHHHHHHHHHH
Confidence 46889999999983 33 45667777888887888899999873 3556677765 22223344455444
No 33
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=54.67 E-value=15 Score=26.18 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023601 143 VVPAYDEQITELKLSVDSLEKERDFYFAKLRD 174 (280)
Q Consensus 143 ~~~~L~~qi~eLk~~ve~LEkERDFYF~KLRd 174 (280)
++.+|..++.+|+..|+.|+.|-.|.=+-|++
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45788889999999999999998887665554
No 34
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}
Probab=53.42 E-value=2.2 Score=39.34 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=42.7
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHH-HhcCcccccccccccccCC--cccHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVF-NKLKITKHIEVNKLIKGRP--LDNLEFMQWMKRY 67 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF-~K~~I~K~IpVekLvkgk~--qdNlEFlQWfkkf 67 (280)
|.+.|+.|++..+.- .+-.+|.+..=+.. +++||.+.+..+.++.++. .-++-|+.-|+.+
T Consensus 228 ~~~~P~lid~~~l~~-----~~~~~N~~~Af~~Ae~~LGi~~ll~pEDi~~~~pDeksimtyvs~ly~~ 291 (296)
T 3f7p_A 228 HRHKPLLIDMNKVYR-----QTNLENLDQAFSVAERDLGVTRLLDPEDVDVPQPDEKSIITYVSSLYDA 291 (296)
T ss_dssp HHHCGGGCCHHHHTT-----SCHHHHHHHHHHHHHHHHCCCCCCCHHHHSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHCcCccCHHHcCc-----ccHHHHHHHHHHHHHHhCCCCccCCHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 557788888776642 34567887766666 6899999999999877655 4456666555544
No 35
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=50.22 E-value=18 Score=28.04 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023601 145 PAYDEQITELKLSVDSLEKERDFYFAKLRD 174 (280)
Q Consensus 145 ~~L~~qi~eLk~~ve~LEkERDFYF~KLRd 174 (280)
..|..|+..|+.....+.+|||+|=.|+-+
T Consensus 58 ~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 58 TQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667888888888899999999988754
No 36
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1
Probab=46.94 E-value=9.3 Score=34.07 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=47.3
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccc-cccccccccCCcccHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKH-IEVNKLIKGRPLDNLEFM 61 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~-IpVekLvkgk~qdNlEFl 61 (280)
+.|.||.|+.++++-........++|....-++.+..||... |--+.|+.|+..--|-++
T Consensus 71 e~l~~~~v~~~~i~~~~~~~~~~~eNv~~aL~~~k~~g~~l~~I~~~DIvdg~~~liLgLl 131 (275)
T 1aoa_A 71 NLSVPDTIDERAINKKKLTPFIIQENLNLALNSASAIGCHVVNIGAEDLRAGKPHLVLGLL 131 (275)
T ss_dssp HHHSTTSSCGGGSCCSSCCHHHHHHHHHHHHHHHHHTTCCCTTCCHHHHHTTCHHHHHHHH
T ss_pred HHhcCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHcCcHHHHHHHH
Confidence 467899999888875555678899999999999999999863 667778888765555554
No 37
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1
Probab=45.74 E-value=12 Score=29.13 Aligned_cols=49 Identities=24% Similarity=0.446 Sum_probs=36.8
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccc--cccccccccC
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKH--IEVNKLIKGR 53 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~--IpVekLvkgk 53 (280)
..|.||+|+ ||+ .....+.+..|....-++.+++|+... +....|..|+
T Consensus 39 N~l~P~~v~--ki~-~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~~DL~e~k 89 (108)
T 1h67_A 39 NKLQPGSVQ--KVN-DPVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENT 89 (108)
T ss_dssp HHHSTTSST--TCC-CTTSSHHHHHHHHHHHHHHHHHTSCGGGSCCHHHHHHTC
T ss_pred HHhCCCCcc--ccc-ccccchHHHHHHHHHHHHHHHcCCCcccccChhHHHhCC
Confidence 467899986 564 345668888999988889999999874 4566677665
No 38
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1
Probab=45.29 E-value=11 Score=30.89 Aligned_cols=67 Identities=9% Similarity=0.148 Sum_probs=46.9
Q ss_pred CccCC---CCccCcccccccCChHHHHHhHHHHHHHHHhcCcccc--cccccccccCCccc-HHHHHHHHHHHHh
Q 023601 2 DATHP---GMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKH--IEVNKLIKGRPLDN-LEFMQWMKRYCDS 70 (280)
Q Consensus 2 D~lfP---g~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~--IpVekLvkgk~qdN-lEFlQWfkkf~d~ 70 (280)
..|.| |.|++ ||+ ..+..+-+..|....-++.+++||... .....|..+|-... +.=|.++.++...
T Consensus 51 N~l~P~~~~~I~~-kin-~~~~~f~~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn~~~V~~cL~aL~~~a~~ 123 (144)
T 1ujo_A 51 NSLYPEGSKPVKV-PEN-PPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDLYEGKDMAAVQRTLMALGSLAVT 123 (144)
T ss_dssp HHHSCTTTCCSCC-CSS-CCCSHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCcccCCCcce-eec-CCCchhHHHHHHHHHHHHHHHcCcCccccCChhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45789 88883 555 456788999999999999999999873 45777888773221 2335666666543
No 39
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=42.74 E-value=15 Score=32.27 Aligned_cols=62 Identities=16% Similarity=0.367 Sum_probs=40.6
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHh-cCcccccccccccccCCcccHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNK-LKITKHIEVNKLIKGRPLDNLEFMQWMKRYC 68 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K-~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~ 68 (280)
|.+.|+.|| +|..-.+.+-++|.+.-=+...+ +||.+.+..+.++.|+. |-.-.|-.+-.||
T Consensus 179 ~~~~P~~i~----~~~~l~~~~~~~n~~~a~~~A~~~lGi~~~l~peDi~~~~~-d~ksi~tyvs~~~ 241 (245)
T 2wa7_A 179 DSCAPGLCP----DWESWDPQKPVDNAREAVQQADDWLGVPQVITPEEIIHPDV-DEHSVMTYLSQFP 241 (245)
T ss_dssp HHHSTTSST----TGGGSCTTCHHHHHHHHHHHHHHHSCCCCSSCHHHHTCTTC-CHHHHHHHHTHHH
T ss_pred HHHCccccc----cccccCcccHHHHHHHHHHHHHHhCCCCccCCHHHhccCCC-cHHHHHHHHHHHh
Confidence 456788773 33333455677787765555555 99999999999999765 3344444444444
No 40
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=40.77 E-value=11 Score=36.72 Aligned_cols=60 Identities=22% Similarity=0.194 Sum_probs=44.2
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQ 62 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQ 62 (280)
|.+.|+.|++..|.-. .++-+-.+|++.-=++-.++||.+.+..+.++.++..-++-|+.
T Consensus 449 ~~~~P~~i~~~~l~~~-~~~~~~~~n~~~af~~A~~lGi~~~l~peDi~~~~pksi~tyva 508 (513)
T 1rt8_A 449 HGIKSEYVDYNLVTDG-STEELAIQNARLAISIARKLGAVIFILPEDIVAVRPRLVLHFIG 508 (513)
T ss_dssp HHHCGGGCCGGGCCCC-CSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTCHHHHHHHHH
T ss_pred HHhCCCcCCHHhhccc-cChhhHHHHHHHHHHHHHHcCCCccCCHHHhcCCCcccHHHHHH
Confidence 4567888887776432 35668888888766666899999999999999998644444443
No 41
>2zop_A Putative uncharacterized protein TTHB164; all alpha proteins, plasmid, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=40.39 E-value=13 Score=29.45 Aligned_cols=16 Identities=25% Similarity=0.756 Sum_probs=13.6
Q ss_pred ccHHHHHHHHHHHHhh
Q 023601 56 DNLEFMQWMKRYCDSV 71 (280)
Q Consensus 56 dNlEFlQWfkkf~d~n 71 (280)
.-|+|+.|+|+|.++.
T Consensus 96 e~La~~~WlKRfAea~ 111 (114)
T 2zop_A 96 EVLAAAEWFKRFAQAL 111 (114)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4589999999998864
No 42
>2oeb_A Hypothetical protein; unknown function, PSI-2, MCSG, struc genomics, protein structure initiative, midwest center for structural genomics; 1.66A {Archaeoglobus fulgidus} SCOP: a.70.2.1
Probab=36.87 E-value=16 Score=30.79 Aligned_cols=18 Identities=17% Similarity=0.717 Sum_probs=14.8
Q ss_pred ccHHHHHHHHHHHHhhCC
Q 023601 56 DNLEFMQWMKRYCDSVNG 73 (280)
Q Consensus 56 dNlEFlQWfkkf~d~n~~ 73 (280)
.-|+|+.|+|+|.++-..
T Consensus 135 E~La~l~WlKRfAea~l~ 152 (155)
T 2oeb_A 135 EALSILNWIKKFAKAMLE 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 358999999999988654
No 43
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=35.34 E-value=13 Score=32.44 Aligned_cols=50 Identities=12% Similarity=0.335 Sum_probs=39.6
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccc--cccccccccC
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKH--IEVNKLIKGR 53 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~--IpVekLvkgk 53 (280)
..|.||+| +||+-..+..+.+..|....-++.+++||... +....|..++
T Consensus 93 N~l~P~sv--~kI~~~s~~~f~~~eNI~~FL~ac~~~Gvp~~~lF~t~DL~e~k 144 (203)
T 1p5s_A 93 QKFQPDKL--IKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGK 144 (203)
T ss_dssp HHHCTTSC--CCCCCCSSSCCCHHHHHHHHHHHHHHTTCCGGGCCCHHHHHSCS
T ss_pred HHhCCCCc--ccccCCCCCcchHHHHHHHHHHHHHHcCCCcccccCHHHHHhcC
Confidence 46789998 57744566778888999999999999999884 4677788886
No 44
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=32.90 E-value=19 Score=29.44 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHhhCCC
Q 023601 57 NLEFMQWMKRYCDSVNGG 74 (280)
Q Consensus 57 NlEFlQWfkkf~d~n~~g 74 (280)
-.|+|+|+.++++.|+.+
T Consensus 12 R~elL~WiN~~L~~n~~k 29 (127)
T 2qjx_A 12 RTELLTWLNGLLNLNYKK 29 (127)
T ss_dssp HHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHHHHcCCccH
Confidence 379999999999988875
No 45
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens}
Probab=31.56 E-value=12 Score=32.12 Aligned_cols=68 Identities=10% Similarity=0.212 Sum_probs=45.7
Q ss_pred CccCCCCccCcccc------cc-cCChHHHHHhHHHHHHHHHhcCcccc--cccccccccCCcc-cHHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVN------FD-AKSEYEMIQNYKVLQDVFNKLKITKH--IEVNKLIKGRPLD-NLEFMQWMKRYCD 69 (280)
Q Consensus 2 D~lfPg~Vpl~KVk------F~-a~~e~e~i~NfKvLQ~aF~K~~I~K~--IpVekLvkgk~qd-NlEFlQWfkkf~d 69 (280)
..|.||+||++||. |+ .+..+-+..|....-.+.+++||... +....|..|+-.. =+.=|.++.++..
T Consensus 63 N~l~P~sv~~~kI~~~~~~~~~~~~~~f~~~eNI~~FL~ac~~~Gvp~~~lFet~DL~e~kn~~~Vi~cL~aL~~~a~ 140 (190)
T 2rr8_A 63 NFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIYDRKNMPRCIYCIHALSLYLF 140 (190)
T ss_dssp HHSCTTTSCSSCSSTTTCHHHHHTCCCSSTHHHHHHHHHGGGGTTCCSTTCCCHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCcccccccccccccccCCCCcchHHHHHHHHHHHHHHcCCCccccCCHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 46889999998873 33 34556677788888889999999872 3566677776322 2334556666543
No 46
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=31.36 E-value=24 Score=29.20 Aligned_cols=50 Identities=14% Similarity=0.288 Sum_probs=39.0
Q ss_pred CccCC---CCccCcccccccCChHHHHHhHHHHHHHHHhcCcccc--cccccccccCC
Q 023601 2 DATHP---GMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKH--IEVNKLIKGRP 54 (280)
Q Consensus 2 D~lfP---g~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~--IpVekLvkgk~ 54 (280)
..|.| |+|+ ||+ ..+..+-+..|....-.+.+++||... +....|..|+-
T Consensus 59 N~l~P~~~~~i~--kIn-~~~~~F~~~eNI~~FL~ac~~~Gv~~~~lF~t~DL~e~kn 113 (155)
T 1wym_A 59 NALYPEGQAPVK--KIQ-ASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKN 113 (155)
T ss_dssp HHHSCTTTCSCC--CCC-CCCCHHHHHHHHHHHHHHHHHHTCCTTTCCCHHHHHTCSC
T ss_pred HHhccccCCCcC--ccc-CCCccccHHHHHHHHHHHHHHcCCCccccCChHHHHhcCC
Confidence 45789 9988 665 356788899999999999999999873 45677888763
No 47
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=31.17 E-value=13 Score=33.72 Aligned_cols=62 Identities=18% Similarity=0.380 Sum_probs=42.1
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHh-cCcccccccccccccCCcccHHHHHHHHHHH
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNK-LKITKHIEVNKLIKGRPLDNLEFMQWMKRYC 68 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K-~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~ 68 (280)
|.+.|+.|| +|..-.+.+-.+|.+.-=+...+ +||.+.+..+.++.++. |-.-.|-.+-.||
T Consensus 206 ~~~~P~li~----d~~~l~~~~~~~n~~~Af~~Ae~~lGi~~ll~peDiv~~~p-D~ksimtYvs~~~ 268 (272)
T 3hoc_A 206 DSCAPGLCP----DWDSWDASKPVTNAREAMQQADDWLGIPQVITPEEIVDPNV-DKHSVMTYLSQFP 268 (272)
T ss_dssp HHHSTTSST----TGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCTTC-CHHHHHHHHTTCC
T ss_pred HHhCccccc----chhhcCccCHHHHHHHHHHHHHHhCCCCccCCHHHhccCCC-ChHHHHHHHHHhh
Confidence 556788773 33333455678888776666666 99999999999998754 5555555444443
No 48
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1
Probab=30.99 E-value=20 Score=29.81 Aligned_cols=50 Identities=12% Similarity=0.335 Sum_probs=38.9
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccc--cccccccccC
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKH--IEVNKLIKGR 53 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~--IpVekLvkgk 53 (280)
..|.||+| +||+-..+..+.+..|....-.+.+++||... .....|..|+
T Consensus 49 N~l~P~~i--~kI~~~~~~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~k 100 (159)
T 1p2x_A 49 QKFQPDKL--IKIFYSNELQFRHSDNINKFLDFIHGIGLPEIFHFELTDIYEGK 100 (159)
T ss_dssp HHHCTTSC--CCCCCCSSCCTTHHHHHHHHHHHHHHTTCCGGGCCCHHHHSSCS
T ss_pred HHhCCCCc--cccccccCCcchHHHHHHHHHHHHHHcCCCcccccCHHHHHhcC
Confidence 45789987 56654457788889999998999999999873 3567788776
No 49
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=30.76 E-value=24 Score=28.58 Aligned_cols=50 Identities=22% Similarity=0.452 Sum_probs=38.4
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccc--cccccccccCC
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKH--IEVNKLIKGRP 54 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~--IpVekLvkgk~ 54 (280)
..|.||+|+ ||+ .....+-+..|....-++.+++||... +....|..|+-
T Consensus 53 N~l~P~~v~--ki~-~~~~~f~~~eNI~~Fl~a~~~~Gv~~~~lF~~~DL~e~kn 104 (136)
T 1wyp_A 53 NKLQPGSVK--KIN-ESTQNWHQLENIGNFIKAITKYGVKPHDIFEANDLFENTN 104 (136)
T ss_dssp HHHSTTSSS--CCC-CSSCSHHHHHHHHHHHHHHHHHTCCGGGCCCHHHHHSCSC
T ss_pred HhhCCCCcc--ccc-ccccchHHHHHHHHHHHHHHHcCCCcccccCchHHhcCCC
Confidence 467899984 664 345678888999999999999999874 56677877763
No 50
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=30.62 E-value=25 Score=28.83 Aligned_cols=50 Identities=20% Similarity=0.395 Sum_probs=38.6
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCcccc--cccccccccCC
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITKH--IEVNKLIKGRP 54 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K~--IpVekLvkgk~ 54 (280)
..|.||+|+ ||+ .....+.+..|....-++.+++||... +....|..|+-
T Consensus 53 N~l~P~~v~--kin-~~~~~f~~~eNI~~FL~a~~~~Gv~~~~lF~~~DL~e~kn 104 (146)
T 1wyn_A 53 NKLQPGSVP--KIN-RSMQNWHQLENLSNFIKAMVSYGMNPVDLFEANDLFESGN 104 (146)
T ss_dssp HHHCTTSCS--CCC-CSSCHHHHHHHHHHHHHHHHHHTCCSSSCCCHHHHHTCSC
T ss_pred HHhCCCCcc--ccc-cccccccHHHHHHHHHHHHHHcCCCcccccChhHHHhcCC
Confidence 467899984 664 345678889999999999999999873 56677777763
No 51
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=30.04 E-value=64 Score=23.70 Aligned_cols=50 Identities=10% Similarity=-0.040 Sum_probs=36.5
Q ss_pred cCChHHHHHhHHHHHHHHHhcCccc-cccccccc-ccCCcccHHHHHHHHHHH
Q 023601 18 AKSEYEMIQNYKVLQDVFNKLKITK-HIEVNKLI-KGRPLDNLEFMQWMKRYC 68 (280)
Q Consensus 18 a~~e~e~i~NfKvLQ~aF~K~~I~K-~IpVekLv-kgk~qdNlEFlQWfkkf~ 68 (280)
-.+-.+|++++++-... .-|.-.. .++|..+. .+.|.|---|-.+||+++
T Consensus 44 G~s~~~~~~~~Rl~~A~-~lL~~~~~~~si~~IA~~~Gf~~~s~F~r~Fk~~~ 95 (108)
T 3mn2_A 44 GYSPMAFAKRVRLQHAH-NLLSDGATPTTVTAAALSCGFSNLGHFARDYRDMF 95 (108)
T ss_dssp SSCHHHHHHHHHHHHHH-HHHHSSSSCCCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHH-HHHHcCCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34678999999975543 4443333 26777755 578999999999999997
No 52
>1n1f_A Interleukin-19; cytokine, four helix bundle, immune system; HET: NAG; 1.95A {Homo sapiens} SCOP: a.26.1.3
Probab=27.45 E-value=36 Score=28.66 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=30.7
Q ss_pred cccCChHHHHHhHHHHHHHHHhcCcccccccccccccCCcccHHHHHHHHHHHH
Q 023601 16 FDAKSEYEMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCD 69 (280)
Q Consensus 16 F~a~~e~e~i~NfKvLQ~aF~K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d 69 (280)
+.+....+-.+++..+.+.|++|++.+-+ +|. +.+===|+.|+++|++
T Consensus 107 ~~C~~~~~~~~~v~~ik~~f~kL~~~~g~-----~KA-iGELDILl~wie~~~~ 154 (159)
T 1n1f_A 107 RQCHCRQEATNATRVIHDNYDQLEVHAAA-----IKS-LGELDVFLAWINKNHE 154 (159)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHSCHHHHH-----HHH-HHTHHHHHHHHHHHSC
T ss_pred cCCCCcHHHHHHHHHHHHHHhcccchhhH-----HHH-HHHHHHHHHHHHHHhh
Confidence 34555567778899999999999976321 111 0000127899999975
No 53
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=26.45 E-value=1e+02 Score=21.37 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=23.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023601 141 SAVVPAYDEQITELKLSVDSLEKERDFYFAK 171 (280)
Q Consensus 141 ~~~~~~L~~qi~eLk~~ve~LEkERDFYF~K 171 (280)
...+++|..++.+|+..++.|.++-+=.=.|
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999999988875443333
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.92 E-value=51 Score=25.99 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023601 148 DEQITELKLSVDSLEKERDF 167 (280)
Q Consensus 148 ~~qi~eLk~~ve~LEkERDF 167 (280)
.+++..|+..|+.||+||+=
T Consensus 11 ~e~~~~lr~ei~~Le~E~~r 30 (100)
T 1go4_E 11 REEADTLRLKVEELEGERSR 30 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777763
No 55
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=25.70 E-value=22 Score=22.58 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=7.5
Q ss_pred HHHHHHHHH
Q 023601 58 LEFMQWMKR 66 (280)
Q Consensus 58 lEFlQWfkk 66 (280)
=+|++|+++
T Consensus 12 kdFv~WL~n 20 (31)
T 3c5t_B 12 RLFIEWLKN 20 (31)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 489999985
No 56
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=24.82 E-value=30 Score=25.13 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=10.1
Q ss_pred HHHHHHHHHhcC
Q 023601 170 AKLRDIEILCQS 181 (280)
Q Consensus 170 ~KLRdIEiLcQe 181 (280)
.|||.||+-|=+
T Consensus 16 ~klR~IEvk~me 27 (61)
T 2e62_A 16 QKRRRIEVALIE 27 (61)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999999853
No 57
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=23.54 E-value=99 Score=23.33 Aligned_cols=26 Identities=35% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHH
Q 023601 141 SAVVPAYDEQITELKLSVDSLEKERD 166 (280)
Q Consensus 141 ~~~~~~L~~qi~eLk~~ve~LEkERD 166 (280)
..+++-|.++|.||...+..||.|-.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~ 39 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENT 39 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999998844
No 58
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Probab=22.43 E-value=54 Score=28.60 Aligned_cols=68 Identities=10% Similarity=0.057 Sum_probs=51.7
Q ss_pred CccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCccc-ccccccccccCCcccHHHHHHHHHHHHh
Q 023601 2 DATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITK-HIEVNKLIKGRPLDNLEFMQWMKRYCDS 70 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K-~IpVekLvkgk~qdNlEFlQWfkkf~d~ 70 (280)
+.|-|+.++ ++++-.++.....++|....-++.+..||.. .|-.+.++.|+..--|-++=-+-.+|.-
T Consensus 58 e~L~~~~~~-~~~n~~~~~~~~~~eNv~~aL~~~k~~g~~lv~I~~~DIvdG~~kliLgLlW~li~~~~i 126 (245)
T 2wa7_A 58 EVLSQKRMY-RKYHQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSI 126 (245)
T ss_dssp HHHHTCCCS-SCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCCSCCHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCc-hhcCCCCCcHHHHHHHHHHHHHHHHHcCCcccCCCHHHhhCCCHHHHHHHHHHHHHHHcc
Confidence 345677775 7777777888899999999999999999985 4777889999877777776334445543
No 59
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=21.42 E-value=1.6e+02 Score=21.87 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 023601 150 QITELKLSVDSL-------EKERDFYFAKLRDIEI 177 (280)
Q Consensus 150 qi~eLk~~ve~L-------EkERDFYF~KLRdIEi 177 (280)
-...||...++| -.||+|+=.||+.-=-
T Consensus 27 sNq~mkeR~eeL~~wqekQkeErefl~~kf~EAr~ 61 (70)
T 3brv_B 27 SNQILRERCEELLHFQASQREEKEFLMCKFQEARK 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344445555555 5699999999986533
No 60
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=21.25 E-value=53 Score=32.06 Aligned_cols=52 Identities=13% Similarity=0.310 Sum_probs=35.6
Q ss_pred CccCCCCccCcccccccCC-hHHHHHhHHHHHHHH-HhcCccc--ccccccccccC
Q 023601 2 DATHPGMVPMHKVNFDAKS-EYEMIQNYKVLQDVF-NKLKITK--HIEVNKLIKGR 53 (280)
Q Consensus 2 D~lfPg~Vpl~KVkF~a~~-e~e~i~NfKvLQ~aF-~K~~I~K--~IpVekLvkgk 53 (280)
..|.||+||+++|+-.++. .+-...|..-.-.+. +++||+. ......|.-++
T Consensus 51 n~l~p~~v~~~~~~~~~~~~~f~~~~ni~~Fl~~~~~~~g~~~~~~f~~~Dl~~~~ 106 (587)
T 3ky9_A 51 NNLLPHAINLREVNLRPQMSQFLCLKNIRTFLSTCCEKFGLKRSELFEAFDLFDVQ 106 (587)
T ss_dssp HHHSTTSSCGGGSCSSCTTBHHHHHHHHHHHHHHHHHTTCCCTTSSCCHHHHHTCS
T ss_pred HHhCCCCCCccccCCCccccchHHHHHHHHHHHHHHHHcCCCHHHcCCchhhhccC
Confidence 4688999999999855554 466666666656665 8999986 34455555444
No 61
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A
Probab=21.18 E-value=58 Score=29.30 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=53.3
Q ss_pred ccCCCCccCcccccccCChHHHHHhHHHHHHHHHhcCccc-ccccccccccCCcccHHHHHHHHHHHHhh
Q 023601 3 ATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITK-HIEVNKLIKGRPLDNLEFMQWMKRYCDSV 71 (280)
Q Consensus 3 ~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~K~~I~K-~IpVekLvkgk~qdNlEFlQWfkkf~d~n 71 (280)
.|-|+.+ .++++..++.-...++|..+.=+.++..||.. .|--+.++.|+..--|-++=-+-.+|.-.
T Consensus 86 ~Ls~~~l-~~~~~~~p~~r~~kleNv~~aL~~lk~~gv~lvnI~~~DIvdGn~kliLgLlW~Li~~~~i~ 154 (272)
T 3hoc_A 86 VLSQKKM-HRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHYSIS 154 (272)
T ss_dssp HHHTSCC-SSCCCSSCCSHHHHHHHHHHHHHHHHHTTCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCcc-ccccCCCCccHHHHHHHHHHHHHHHHHcCCcccccccchhhcCCHHHHHHHHHHHHHHHhhh
Confidence 4567776 57888888888899999999999999999975 47778899998777777765466666543
No 62
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=20.86 E-value=19 Score=36.41 Aligned_cols=64 Identities=17% Similarity=0.340 Sum_probs=42.7
Q ss_pred CCccCCCCccCcccccccCChHHHHHhHHHHHHHHH-hcCcccccccccccccCCcccHHHHHHHHHHHH
Q 023601 1 MDATHPGMVPMHKVNFDAKSEYEMIQNYKVLQDVFN-KLKITKHIEVNKLIKGRPLDNLEFMQWMKRYCD 69 (280)
Q Consensus 1 mD~lfPg~Vpl~KVkF~a~~e~e~i~NfKvLQ~aF~-K~~I~K~IpVekLvkgk~qdNlEFlQWfkkf~d 69 (280)
+|.+.|+.|++..++-. +-++|.+..=++.. .+||.+.+..+.++.+..-|-.-.|-.+-.||.
T Consensus 159 i~~~~p~~~~~~~~~~~-----~~~~n~~~a~~~a~~~lg~~~~l~~ed~~~~~~pd~~~~~~y~~~l~~ 223 (863)
T 1sjj_A 159 IHRHRPELIDYGKLRKD-----DPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSFYH 223 (863)
T ss_dssp HHTTCCSSSCSGGGGSC-----CCGGGCTHHHHHHHHHHCCCCSCCHHHHTTCSSCCHHHHHHHHHHTTT
T ss_pred HHHhCCCCcChhhCCCC-----CHHHHHHHHHHHHHHhCCCCCccCHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 35678999998887643 34566665545455 499999999999998754444444444444443
No 63
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.82 E-value=1.2e+02 Score=23.08 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 023601 143 VVPAYDEQITELKLSVDSLEKERDF 167 (280)
Q Consensus 143 ~~~~L~~qi~eLk~~ve~LEkERDF 167 (280)
.+..|.++...|+..|+.|++|=++
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999998554
No 64
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=20.28 E-value=1.8e+02 Score=23.20 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023601 148 DEQITELKLSVDSLEKERDFYFAKLRDIEILCQ 180 (280)
Q Consensus 148 ~~qi~eLk~~ve~LEkERDFYF~KLRdIEiLcQ 180 (280)
..+++.|+..+..|-.+++=|=-+||+||.--.
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 345777888888888999999999999997543
Done!