Query 023603
Match_columns 280
No_of_seqs 120 out of 245
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:16:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13862 BCIP: p21-C-terminal 100.0 3.3E-64 7.2E-69 445.5 20.0 191 48-249 1-194 (194)
2 KOG3034 Isoamyl acetate-hydrol 100.0 4.9E-56 1.1E-60 409.1 20.1 251 5-261 2-275 (308)
3 PF02228 Gag_p19: Major core p 73.8 3.5 7.5E-05 32.4 2.8 33 59-91 38-74 (92)
4 COG0838 NuoA NADH:ubiquinone o 38.6 20 0.00044 30.1 1.7 20 2-21 34-53 (123)
5 PF06478 Corona_RPol_N: Corona 34.4 21 0.00046 34.6 1.3 44 55-98 149-193 (355)
6 PF12355 Dscam_C: Down syndrom 22.9 71 0.0015 26.6 2.3 18 14-31 59-76 (124)
7 PF15405 PH_5: Pleckstrin homo 22.7 42 0.00091 28.2 1.0 16 199-214 21-36 (135)
8 KOG0125 Ataxin 2-binding prote 19.6 2.2E+02 0.0047 28.1 5.2 54 39-119 87-147 (376)
9 PLN02706 glucosamine 6-phospha 18.7 4.4E+02 0.0096 20.9 6.3 61 55-115 8-72 (150)
10 cd04596 CBS_pair_DRTGG_assoc T 17.6 1.7E+02 0.0037 21.7 3.4 78 80-164 11-92 (108)
No 1
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=100.00 E-value=3.3e-64 Score=445.48 Aligned_cols=191 Identities=45% Similarity=0.846 Sum_probs=171.7
Q ss_pred cceeeEEEeeCCCCCCHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeCCcccCchhH
Q 023603 48 EGSEADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCI 127 (280)
Q Consensus 48 e~~~VDFeffdp~e~DfhgIK~LL~qlf~~~~~dls~LadlIi~Q~~vGtvVK~~~ded~dvfg~~SvLNL~~~k~~~~i 127 (280)
|.+||||+||||+|.||||||+||+|||++++||+++|||+|++|++||||||++|+++++||||+|||||++|++++|+
T Consensus 1 e~V~vdFe~~dp~~~D~hgIk~LL~ql~~~~~~dl~~LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svlnl~~~k~~~~i 80 (194)
T PF13862_consen 1 EEVNVDFEFFDPNEIDFHGIKNLLQQLFLDAEIDLSELADLIIEQNNVGSVVKQADGDEDDVYGFLSVLNLTQHKDHPCI 80 (194)
T ss_pred CeEEEEEEeeCCChhhHHHHHHHHHHhccccCcCHHHHHHHHHcCCCCceEEEecCCCCCcceEEEEEEEcccccccHHH
Confidence 57899999999999999999999999999999999999999999999999999965567899999999999999999999
Q ss_pred HHHHHHHHHhcc---cchhHHHHHHHhccCCCceEEEEeccccCCCccchHHHHHHHHHHHHHhhhcCChhhhcCCcccc
Q 023603 128 KELKEFLLKVCQ---EKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDEPTAELRNSFRFK 204 (280)
Q Consensus 128 ~~L~~yLl~~~~---~~~~~~~l~~lL~~~~~~vGLlinER~iNiP~ql~ppL~~~L~eEI~~A~e~~~~ee~r~~f~F~ 204 (280)
++|++||+++|+ .+++.+.|+++|++++++|||||||||+|||+||+||||++|++||+||.+++ ++|+|+
T Consensus 81 ~~l~~yl~~k~~~~~~~~~~~~l~~~l~~~~~~vGLlinER~iN~P~ql~ppl~~~L~~ei~~a~~~~------~~~~f~ 154 (194)
T PF13862_consen 81 KQLRKYLLSKCSKSADKEVKKKLEKLLSSSNKNVGLLINERFINIPPQLAPPLYKMLLEEIEWAQEDE------KPFKFT 154 (194)
T ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHhccCCCeEEEEehhhhcCCHHHHHHHHHHHHHHHHHHHhcC------CCCCCe
Confidence 999999999886 57789999999998889999999999999999999999999999999999875 789999
Q ss_pred EEEEEEeEEeecccccccccccccCCCCCCCCCccccCchhhhhh
Q 023603 205 CYLLVSKIYKHKNANQKNNRNLIRRSGSDGGDGIVYIKPEDENFH 249 (280)
Q Consensus 205 ~yLiisK~y~~~~~~~KKkk~~~~~~~~~~~~~i~y~~pEDE~f~ 249 (280)
|||+|||+|++.++.++|+++ +....++++|+|||||+|+
T Consensus 155 ~yL~isk~y~~~~~~~~~~~~-----~~~~~~~~~~~~~Ede~~~ 194 (194)
T PF13862_consen 155 HYLIISKVYKEKKKKKRKKKK-----KKKKKDEIIYFNPEDEIFH 194 (194)
T ss_pred EEEEEEEEEeecccccccccc-----ccCCcccceeCChhhhhcC
Confidence 999999999986543222211 1223478999999999985
No 2
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=100.00 E-value=4.9e-56 Score=409.08 Aligned_cols=251 Identities=31% Similarity=0.506 Sum_probs=215.3
Q ss_pred CchhhhhhcccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCC----------CcceeeEEEeeCCCCCCHHHHHHHHHHh
Q 023603 5 PTRDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSE----------EEGSEADFVFFDPKPDDFHGVKILLQTY 74 (280)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----------ee~~~VDFeffdp~e~DfhgIK~LL~ql 74 (280)
++|+|||+..|+.++++-++.+++..++.+++.+++++++++ ++++|+|||||+|+|.||||||+||+|+
T Consensus 2 ~~~~~~~~~~s~~k~~~l~~~~r~~~e~~~v~~~~edddD~d~~~eeek~~e~e~vnidFE~~~p~d~D~~giknLL~Ql 81 (308)
T KOG3034|consen 2 ASRSKRRAVESKYKQLPLPPFQRDEEEEEDVEDESEDDDDEDKENEEEKEVEDEEVNIDFEAYSPSDVDADGIKNLLQQL 81 (308)
T ss_pred CCcccchhhhhcCCCCCCcchhccccccccccccccCcccccccchhhhccccceEeccccccCCCCcchHHHHHHHHHH
Confidence 578899999999999999999999999999888877764332 3456999999999999999999999999
Q ss_pred hccCCCChhhHHHHHHcCCCcceEEEecCCC-------CCCceEEEEeeeCCcccCchhHHHHHHHHHHhcc---cchhH
Q 023603 75 LDDTQWDLSGFVDLILAQTTVGTVVKMEGDD-------DDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQ---EKDVI 144 (280)
Q Consensus 75 f~~~~~dls~LadlIi~Q~~vGtvVK~~~de-------d~dvfg~~SvLNL~~~k~~~~i~~L~~yLl~~~~---~~~~~ 144 (280)
|+.++||+++|||+||+|+++|+|||+++++ ++|+||++|+||++..++.+||++|.+|++++|. ++.+.
T Consensus 82 fl~~~Vnla~laDlii~q~~~gsvikq~~~~e~~~d~m~~D~~~~~s~lnl~~~~~~~~ikqL~~yvL~r~~k~~~k~v~ 161 (308)
T KOG3034|consen 82 FLRAHVNLAALADLIIAQNHIGSVIKQDDDSETENDDMDEDPFGFLSFLNLTARKDTKCIKQLQEYVLRRCKKNAEKEVV 161 (308)
T ss_pred hccccccHHHhHHHHhhcccccceeEecccccccccccccCCceEEEEeehhhhccchHHHHHHHHHHHHHhhcCCHHHH
Confidence 9999999999999999999999999999864 2578999999999999999999999999999987 57899
Q ss_pred HHHHHHhccCCCceEEEEeccccCCCccchHHHHHHHHHHHHHhhhcCChhhhcCCccccEEEEEEeEEeecccc---cc
Q 023603 145 RDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDEPTAELRNSFRFKCYLLVSKIYKHKNAN---QK 221 (280)
Q Consensus 145 ~~l~~lL~~~~~~vGLlinER~iNiP~ql~ppL~~~L~eEI~~A~e~~~~ee~r~~f~F~~yLiisK~y~~~~~~---~K 221 (280)
++|+.+|.+++++|||||||||||||+||+||||++|++||+||...+ ++|.|.||+++.+.|....+. .+
T Consensus 162 ~~lk~ll~s~~k~vgLlvsERliN~P~qv~pPly~~l~eEla~A~~~~------kp~~f~~~lll~~~y~~eakk~~~s~ 235 (308)
T KOG3034|consen 162 EQLKLLLDSGTKPVGLLVSERLINMPPQVVPPLYQSLQEELAGAHREN------KPYDFCYFLLLVKTYFVEAKKGKSSE 235 (308)
T ss_pred HHHHHHHhcCCCceeEEeehhhhcCCchhhhHHHHHHHHHHHHHhccC------CccceEEEEEEEEEeeehhccCCCcc
Confidence 999999999999999999999999999999999999999999999654 679999999999999875431 11
Q ss_pred cccccccCCCCCCCCCccccCchhhhhhhcCeeEEEEecc
Q 023603 222 NNRNLIRRSGSDGGDGIVYIKPEDENFHKLSLWSFSFPMH 261 (280)
Q Consensus 222 Kkk~~~~~~~~~~~~~i~y~~pEDE~f~k~A~~sf~~~~~ 261 (280)
+.-+..+.+..-..+++.|+|+||++|...+...+.|...
T Consensus 236 ~~~kk~~~a~~~~~aE~~ff~eed~~~e~~~~i~~~~~~~ 275 (308)
T KOG3034|consen 236 KPSKKKKAALLVANAEVEFFYEEDRFFELKSLIEEDTDAG 275 (308)
T ss_pred cccccHHHHhhhccchhhccchHhhhhhhhhccccccccC
Confidence 1111111122345778999999999666666677777666
No 3
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=73.76 E-value=3.5 Score=32.40 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHHHhhcc----CCCChhhHHHHHHc
Q 023603 59 PKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILA 91 (280)
Q Consensus 59 p~e~DfhgIK~LL~qlf~~----~~~dls~LadlIi~ 91 (280)
|++-|||-+|++|.-.+.. ++||.|-||.+|-.
T Consensus 38 PS~~DF~qLr~flk~alkTpvwl~pi~yslla~lipk 74 (92)
T PF02228_consen 38 PSSFDFHQLRNFLKLALKTPVWLNPINYSLLASLIPK 74 (92)
T ss_dssp -STTTHHHHHHHHHHHHT-TTSTTTT-TTTHHHHS-S
T ss_pred CCcccHHHHHHHHHHHHcCCeeeccccHHHHHHHccC
Confidence 5666999999999876653 78999999998743
No 4
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=38.62 E-value=20 Score=30.10 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=17.2
Q ss_pred CCCCchhhhhhcccCCCCCC
Q 023603 2 PRGPTRDKRRTYKSKDQKGF 21 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (280)
||.|+|.|.++||+|.+.-.
T Consensus 34 p~~~~~~K~~~YE~G~~p~g 53 (123)
T COG0838 34 PRRPNPEKLSPYECGNPPFG 53 (123)
T ss_pred CCCCCccccCccccCCCCCC
Confidence 89999999999999976433
No 5
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=34.41 E-value=21 Score=34.60 Aligned_cols=44 Identities=23% Similarity=0.419 Sum_probs=39.5
Q ss_pred EeeCCCCC-CHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceE
Q 023603 55 VFFDPKPD-DFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTV 98 (280)
Q Consensus 55 effdp~e~-DfhgIK~LL~qlf~~~~~dls~LadlIi~Q~~vGtv 98 (280)
.||||-|+ |+|.+=+-|...+..+-++.-.++|+++++.-||-+
T Consensus 149 ~WyDpVEN~di~~vy~kLG~iv~~a~L~~v~f~d~mv~~G~VGVl 193 (355)
T PF06478_consen 149 DWYDPVENPDIHRVYAKLGPIVNRAMLKAVKFCDAMVEKGLVGVL 193 (355)
T ss_pred cCcCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeEEE
Confidence 48999998 999999999999888889999999999999888843
No 6
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=22.94 E-value=71 Score=26.62 Aligned_cols=18 Identities=6% Similarity=0.187 Sum_probs=12.4
Q ss_pred ccCCCCCCCCCCCCCCCC
Q 023603 14 KSKDQKGFPLSSKDKGIP 31 (280)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ 31 (280)
.+|.|.||+|+....+..
T Consensus 59 ~~gSPePPpPPPRn~D~~ 76 (124)
T PF12355_consen 59 GNGSPEPPPPPPRNHDVS 76 (124)
T ss_pred CCCCCCCCCcCCCCCCCC
Confidence 368888888777655544
No 7
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=22.75 E-value=42 Score=28.24 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=13.1
Q ss_pred CCccccEEEEEEeEEe
Q 023603 199 NSFRFKCYLLVSKIYK 214 (280)
Q Consensus 199 ~~f~F~~yLiisK~y~ 214 (280)
..|=|||||+++|.-+
T Consensus 21 ~~~LFDh~Lll~K~k~ 36 (135)
T PF15405_consen 21 HVYLFDHYLLLTKPKK 36 (135)
T ss_dssp EEEEESSEEEEEEEEE
T ss_pred EEEeeccEEEEEEEEe
Confidence 3578999999999844
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=19.56 E-value=2.2e+02 Score=28.14 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=33.3
Q ss_pred CCCCCCCCCcc-e---eeEEEeeCCCCCCHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEec---CCCCCCceE
Q 023603 39 SDLSGSSEEEG-S---EADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKME---GDDDDTPFS 111 (280)
Q Consensus 39 ~~~~~s~~ee~-~---~VDFeffdp~e~DfhgIK~LL~qlf~~~~~dls~LadlIi~Q~~vGtvVK~~---~ded~dvfg 111 (280)
++++++.+-.. + |+=|.|+||+ |++.|. -+|.|+-++ .|-.+-=||
T Consensus 87 st~s~s~~~pkRLhVSNIPFrFRdpD----------L~aMF~-----------------kfG~VldVEIIfNERGSKGFG 139 (376)
T KOG0125|consen 87 STNSSSKDTPKRLHVSNIPFRFRDPD----------LRAMFE-----------------KFGKVLDVEIIFNERGSKGFG 139 (376)
T ss_pred CCcCCCCCCCceeEeecCCccccCcc----------HHHHHH-----------------hhCceeeEEEEeccCCCCccc
Confidence 45555555553 2 9999999998 444331 245555554 222345688
Q ss_pred EEEeeeCC
Q 023603 112 IVTALNLG 119 (280)
Q Consensus 112 ~~SvLNL~ 119 (280)
|+|+=|..
T Consensus 140 FVTmen~~ 147 (376)
T KOG0125|consen 140 FVTMENPA 147 (376)
T ss_pred eEEecChh
Confidence 88887765
No 9
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=18.74 E-value=4.4e+02 Score=20.89 Aligned_cols=61 Identities=11% Similarity=-0.049 Sum_probs=35.9
Q ss_pred EeeCCCCCCHH-HHHHHHHHhhccCCCChhhHHHHHHc---CCCcceEEEecCCCCCCceEEEEe
Q 023603 55 VFFDPKPDDFH-GVKILLQTYLDDTQWDLSGFVDLILA---QTTVGTVVKMEGDDDDTPFSIVTA 115 (280)
Q Consensus 55 effdp~e~Dfh-gIK~LL~qlf~~~~~dls~LadlIi~---Q~~vGtvVK~~~ded~dvfg~~Sv 115 (280)
....+.++|.. ++-.++..+.....++...+...|-. ...-..++-..+++++.++|+.++
T Consensus 8 ~ir~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~ 72 (150)
T PLN02706 8 KVRRLEISDKSKGFLELLQQLTVVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSV 72 (150)
T ss_pred EEeEhhhcccchHHHHHHHhccCCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEE
Confidence 46667777776 67888877654456776676666532 122222333333234679988876
No 10
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=17.63 E-value=1.7e+02 Score=21.66 Aligned_cols=78 Identities=12% Similarity=0.167 Sum_probs=39.6
Q ss_pred CChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeCCcccCchhHHHHHHHHHH---hcc-cchhHHHHHHHhccCC
Q 023603 80 WDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLK---VCQ-EKDVIRDLRLLMGEQA 155 (280)
Q Consensus 80 ~dls~LadlIi~Q~~vGtvVK~~~ded~dvfg~~SvLNL~~~k~~~~i~~L~~yLl~---~~~-~~~~~~~l~~lL~~~~ 155 (280)
..++++.+.+. +...+.+.-++ +++.+.|+++.-+|....... .+.+++.. .+. +.++.+.++.+... .
T Consensus 11 ~~~~~a~~~~~-~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~~~~---~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~ 83 (108)
T cd04596 11 DTVKDWHELNK-ETGHSRFPVVD--EKNKVVGIVTSKDVAGKDPDT---TIEKVMTKNPITVNPKTSVASVAHMMIWE-G 83 (108)
T ss_pred CCHHHHHHHHH-HcCCCceeEEC--CCCeEEEEecHHHHhcccccc---cHHHHhcCCCeEECCCCCHHHHHHHHHHc-C
Confidence 34566666664 44455555444 245799999966654322221 24444432 222 23455555555543 3
Q ss_pred CceEEEEec
Q 023603 156 HDVGLLVSQ 164 (280)
Q Consensus 156 ~~vGLlinE 164 (280)
.....++++
T Consensus 84 ~~~~~Vv~~ 92 (108)
T cd04596 84 IEMLPVVDD 92 (108)
T ss_pred CCeeeEEcC
Confidence 345556654
Done!