Query 023603
Match_columns 280
No_of_seqs 120 out of 245
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 09:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023603.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023603hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 68.7 1.7 0.00012 33.7 3.2 32 59-90 39-74 (137)
2 d1yvoa1 d.108.1.1 (A:4-172) Hy 34.3 22 0.0016 26.0 4.5 62 57-120 3-73 (169)
3 d1yr0a1 d.108.1.1 (A:4-166) Ph 30.5 40 0.0029 24.1 5.4 61 56-119 4-73 (163)
4 d2ozga2 d.108.1.10 (A:8-290) P 29.1 76 0.0056 25.2 7.5 79 54-138 2-100 (283)
5 d1s3za_ d.108.1.1 (A:) Aminogl 28.9 27 0.0019 24.5 4.0 58 55-116 4-63 (147)
6 d1vhsa_ d.108.1.1 (A:) Putativ 24.1 1.1E+02 0.0083 21.5 9.9 63 55-118 3-72 (165)
7 d2rnrb1 b.55.1.9 (B:1-108) TFI 21.3 21 0.0015 26.2 2.0 27 51-77 74-102 (108)
8 d1iyka2 d.108.1.2 (A:225-451) 21.1 1E+02 0.0075 25.1 6.7 61 56-118 43-113 (227)
9 d1qsma_ d.108.1.1 (A:) Histone 19.2 1.4E+02 0.0098 20.5 6.9 62 55-116 4-70 (150)
10 d1iica2 d.108.1.2 (A:219-455) 18.6 1.2E+02 0.0086 24.9 6.6 61 56-118 43-114 (237)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=68.70 E-value=1.7 Score=33.70 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHhhc----cCCCChhhHHHHHH
Q 023603 59 PKPDDFHGVKILLQTYLD----DTQWDLSGFVDLIL 90 (280)
Q Consensus 59 p~e~DfhgIK~LL~qlf~----~~~~dls~LadlIi 90 (280)
|++-|||-+|++|.-.+. .+.||.|-||.+|=
T Consensus 39 PS~~DF~qLr~flklalkTpvwl~Pi~ySlla~liP 74 (137)
T d1jvra_ 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIP 74 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSC
T ss_pred CCcccHHHHHHHHHHHHhCcccccccccchhhccCC
Confidence 566799999999987765 37899999998863
No 2
>d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.29 E-value=22 Score=25.96 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=39.2
Q ss_pred eCCCCCCHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCcc--eEEEecCCCCCCceEEEEeeeCCc
Q 023603 57 FDPKPDDFHGVKILLQTYL-------DDTQWDLSGFVDLILAQTTVG--TVVKMEGDDDDTPFSIVTALNLGR 120 (280)
Q Consensus 57 fdp~e~DfhgIK~LL~qlf-------~~~~~dls~LadlIi~Q~~vG--tvVK~~~ded~dvfg~~SvLNL~~ 120 (280)
+...+.|..+|..+++++. +....+..++...+..+..-+ -+|-.+ .++.+.|++++-....
T Consensus 3 R~a~~~D~~~i~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~vG~~~~~~~~~ 73 (169)
T d1yvoa1 3 RDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVASD--AAGEVLGYASYGDWRP 73 (169)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSCCSCCCHHHHHHHHHHHHHHTCCEEEEEC--TTCCEEEEEEEEESSS
T ss_pred ccCcHHHHHHHHHHHHHHHhhcceecccCCCCHHHHHHHHHhhhccCCceEEEEe--cCCCEEEeeccccccc
Confidence 4556789999999987753 334566777777665543323 333333 3457999987765443
No 3
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=30.49 E-value=40 Score=24.09 Aligned_cols=61 Identities=18% Similarity=0.205 Sum_probs=38.1
Q ss_pred eeCCCCCCHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCc--ceEEEecCCCCCCceEEEEeeeCC
Q 023603 56 FFDPKPDDFHGVKILLQTYL-------DDTQWDLSGFVDLILAQTTV--GTVVKMEGDDDDTPFSIVTALNLG 119 (280)
Q Consensus 56 ffdp~e~DfhgIK~LL~qlf-------~~~~~dls~LadlIi~Q~~v--GtvVK~~~ded~dvfg~~SvLNL~ 119 (280)
.+...++|..+|..|+.++. +....+..++.+.+.....- ..+|-.. ++.+.|++++....
T Consensus 4 IR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~---~~~ivG~~~~~~~~ 73 (163)
T d1yr0a1 4 LRDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAIL---DGKVAGYASYGDWR 73 (163)
T ss_dssp EEECCGGGHHHHHHHHHHHHHHCSSSSSCCCCCHHHHHHHHHHHHHHTCCEEEEEE---TTEEEEEEEEEESS
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhhccCCCcEEEEEE---CCeEEEeecceeec
Confidence 35567789999999987753 23456667766666554322 2233222 35689988776654
No 4
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=29.09 E-value=76 Score=25.21 Aligned_cols=79 Identities=13% Similarity=0.127 Sum_probs=48.1
Q ss_pred EEeeCCCCCCHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeC---------------
Q 023603 54 FVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNL--------------- 118 (280)
Q Consensus 54 Feffdp~e~DfhgIK~LL~qlf~~~~~dls~LadlIi~Q~~vGtvVK~~~ded~dvfg~~SvLNL--------------- 118 (280)
|.+...+++|+..|..|+.+.|.....+..-.-+-+-.++. -|+.. ++.+.|.++++.+
T Consensus 2 ~~~~ka~~~d~~~l~~l~~~~F~~~~~~~~~~~~~~~~~~~--~v~~~----~~~ivg~~~~~~~~~~~~g~~~~~~~i~ 75 (283)
T d2ozga2 2 FKYTKASQENIQQLGNILEQCFVMSFGDSEIYVKGIGLENF--RVIYR----EQKVAGGLAILPMGQWWGGQRVPMAGIA 75 (283)
T ss_dssp EEEEECCTTTHHHHHHHHHHHTTCCTTHHHHHHHHHCGGGE--EEEEE----TTEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEECCHHHHHHHHHHHHHHcCCCcCcHHHHHHHhcCCCE--EEEEE----CCEEEEEEEEEEeeeeECCeeeeEeeEE
Confidence 67788899999999999999997654444334443323222 23332 2335555544433
Q ss_pred -----CcccCchhHHHHHHHHHHhc
Q 023603 119 -----GRYKDHKCIKELKEFLLKVC 138 (280)
Q Consensus 119 -----~~~k~~~~i~~L~~yLl~~~ 138 (280)
..|+.......|.+.+++.+
T Consensus 76 ~v~v~p~~rg~G~~~~L~~~~~~~~ 100 (283)
T d2ozga2 76 AVGIAPEYRGDGAAIALIQHTLQEI 100 (283)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHHH
T ss_pred EEEECcccccCChHHHHHHHHHHHH
Confidence 34555566777777777543
No 5
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]}
Probab=28.93 E-value=27 Score=24.55 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=37.4
Q ss_pred EeeCCCCCCHHHHHHHHHHhhccC--CCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEee
Q 023603 55 VFFDPKPDDFHGVKILLQTYLDDT--QWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTAL 116 (280)
Q Consensus 55 effdp~e~DfhgIK~LL~qlf~~~--~~dls~LadlIi~Q~~vGtvVK~~~ded~dvfg~~SvL 116 (280)
+.+..++.|...+..|.++++... ......+.+.+... ....+|..+ ++.+.|++++-
T Consensus 4 ~Ir~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~va~~---~~~~vG~~~~~ 63 (147)
T d1s3za_ 4 DIRQMNKTHLEHWRGLRKQLWPGHPDDAHLADGEEILQAD-HLASFIAMA---DGVAIGFADAS 63 (147)
T ss_dssp EEEECCGGGHHHHHHHHHHHSTTSCHHHHHHHHHHHHHCS-SEEEEEEEE---TTEEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhCC-CcEEEEEEE---CCEEEEEEEEE
Confidence 456778889999999999998653 23445566655544 334444443 24578877653
No 6
>d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]}
Probab=24.11 E-value=1.1e+02 Score=21.54 Aligned_cols=63 Identities=6% Similarity=0.057 Sum_probs=42.6
Q ss_pred EeeCCCCCCHHHHHHHHHHhhc-------cCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeC
Q 023603 55 VFFDPKPDDFHGVKILLQTYLD-------DTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNL 118 (280)
Q Consensus 55 effdp~e~DfhgIK~LL~qlf~-------~~~~dls~LadlIi~Q~~vGtvVK~~~ded~dvfg~~SvLNL 118 (280)
.++...++|...|..|..++.. ..+.+..++.+.+.....-+.+.-... +++.+.|++++-+.
T Consensus 3 ~iR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ivG~~~~~~~ 72 (165)
T d1vhsa_ 3 TLRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPEDRMEWFSGHTESRPLYVAED-ENGNVAAWISFETF 72 (165)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTSSCSCSSCCCGGGGHHHHHTCCSSSCEEEEEC-TTSCEEEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhccccCCeEEEEe-cCCceEeeeeeeec
Confidence 4556778899999999877543 245667778888776665554444432 34678998876554
No 7
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.25 E-value=21 Score=26.22 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=22.2
Q ss_pred eeEEEeeCCCCC--CHHHHHHHHHHhhcc
Q 023603 51 EADFVFFDPKPD--DFHGVKILLQTYLDD 77 (280)
Q Consensus 51 ~VDFeffdp~e~--DfhgIK~LL~qlf~~ 77 (280)
..-|.|-++..- |.+.||.+|+|++..
T Consensus 74 s~~F~Ftn~~~~~~~Rd~iK~~Lq~~i~~ 102 (108)
T d2rnrb1 74 TTNFHFSNESTAVKERDAVKDLLQQLLPK 102 (108)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECChHHHHHHHHHHHHHHHHHHHH
Confidence 478999998653 889999999999753
No 8
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=21.11 E-value=1e+02 Score=25.13 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=45.0
Q ss_pred eeCCCCCCHHHHHHHHHHhhcc----CCCChhhHHHHHHcCC------CcceEEEecCCCCCCceEEEEeeeC
Q 023603 56 FFDPKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILAQT------TVGTVVKMEGDDDDTPFSIVTALNL 118 (280)
Q Consensus 56 ffdp~e~DfhgIK~LL~qlf~~----~~~dls~LadlIi~Q~------~vGtvVK~~~ded~dvfg~~SvLNL 118 (280)
++.+.+.|...+..||+.|+.. ..++-.+++-.++.+. -|-|-|..+ +++.+-.|+|.-+|
T Consensus 43 lR~M~~kDv~~V~~LL~~yl~~f~l~~~F~~eev~Hwflp~~~~~~~~Vi~sYVve~--~~g~ItDF~SFY~L 113 (227)
T d1iyka2 43 LRPMTGKDVSTVLSLLYKYQERFDIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVED--ENGIITDYFSYYLL 113 (227)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTSSEEEECCHHHHHHHHHCSCSSSCCSSEEEEEEEC--TTSCEEEEEEEEEC
T ss_pred cccCchhhHHHHHHHHHHHHHcCcceEecCHHHHHHhhcCccccCCCCeEEEEEEEC--CCCcEeEEEEEeec
Confidence 7888899999999999999854 6789999999999874 344555433 34556666655444
No 9
>d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.19 E-value=1.4e+02 Score=20.53 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=33.3
Q ss_pred EeeCCCCCCHHHHHHHHHHhhc--cCCCChh---hHHHHHHcCCCcceEEEecCCCCCCceEEEEee
Q 023603 55 VFFDPKPDDFHGVKILLQTYLD--DTQWDLS---GFVDLILAQTTVGTVVKMEGDDDDTPFSIVTAL 116 (280)
Q Consensus 55 effdp~e~DfhgIK~LL~qlf~--~~~~dls---~LadlIi~Q~~vGtvVK~~~ded~dvfg~~SvL 116 (280)
..+...++|++.+..|.+.|.. .....-. .+..-+.++..-+...-...+.++.+.|+..+.
T Consensus 4 ~IR~~~~~D~e~~~~L~~~y~~fy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~ 70 (150)
T d1qsma_ 4 TVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFF 70 (150)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHCTTSCEEEEEEEESSSCCEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhCCCcccceeeeehhhcCcEEEEEEEe
Confidence 3455677899999999887642 3333322 233334454443322222222345678876653
No 10
>d1iica2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.61 E-value=1.2e+02 Score=24.93 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=44.1
Q ss_pred eeCCCCCCHHHHHHHHHHhhcc----CCCChhhHHHHHHcCC-------CcceEEEecCCCCCCceEEEEeeeC
Q 023603 56 FFDPKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILAQT-------TVGTVVKMEGDDDDTPFSIVTALNL 118 (280)
Q Consensus 56 ffdp~e~DfhgIK~LL~qlf~~----~~~dls~LadlIi~Q~-------~vGtvVK~~~ded~dvfg~~SvLNL 118 (280)
++.+.+.|...+..||+.|+.. ..++-.+++-.++.+. -|-|-|..+ .++.|-.|+|.-+|
T Consensus 43 lR~M~~kDv~~V~~LL~~yl~~f~l~~~Ft~eev~Hwflp~~~~~~~~~VI~sYVve~--~~g~ITDF~SFY~L 114 (237)
T d1iica2 43 LRKLKKEDIDQVFELFKRYQSRFELIQIFTKEEFEHNFIGEESLPLDKQVIFSYVVEQ--PDGKITDFFSFYSL 114 (237)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTSSEEECCCHHHHHHHHSCCTTCCGGGCCEEEEEEEC--TTSCEEEEEEEEEC
T ss_pred cccCchhhHHHHHHHHHHHHHhCcceEecCHHHhhheeccccCCCCCCcEEEEEEEEC--CCCcEeeEEEEEec
Confidence 7888889999999999999864 6799999999999764 355555433 23445555554333
Done!