BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023605
         (280 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P56688|MOIH_LIBEM Mandibular organ-inhibiting hormone OS=Libinia emarginata PE=1 SV=1
          Length = 137

 Score = 35.8 bits (81), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 11/91 (12%)

Query: 139 KMFSKIMGVKDGGMAIKINGASDHIAEVRRIFQPTVKGIRIRTLEEVIEQLDEANKIFKV 198
           K+ + +MG  +GG    +  AS H  E R+IF P+ KG+  R L   +E       + K 
Sbjct: 37  KLLATLMGSSEGG---ALESASQHSLEKRQIFDPSCKGLYDRGLFSDLEH------VCKD 87

Query: 199 AFTLF--AIATLLCPIGSYISTLFLHPIMDV 227
            + L+     T  C +  Y + +F   + D+
Sbjct: 88  CYNLYRNPQVTSACRVNCYSNRVFRQCMEDL 118


>sp|Q0IDX7|SAHH_SYNS3 Adenosylhomocysteinase OS=Synechococcus sp. (strain CC9311) GN=ahcY
           PE=3 SV=1
          Length = 476

 Score = 33.5 bits (75), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 23/91 (25%)

Query: 158 GASDHIAEVRRI--FQPTVKGIRIRTLEEVIEQLDEANKIFKVAFTLFAI---------- 205
           GA+  IAEV  I   Q  ++G R+  LE+V++Q+D    IF  A   + +          
Sbjct: 282 GATVCIAEVDPICALQAAMEGYRVVRLEDVVDQMD----IFVTATGNYQVIRNEHLVKMK 337

Query: 206 -ATLLCPIGSYISTLFLHPIMDVSSIKSLNW 235
              ++C IG + + +      DV+S+KS  W
Sbjct: 338 DEAIVCNIGHFDNEI------DVASLKSYEW 362


>sp|Q0AEI7|MUTS_NITEC DNA mismatch repair protein MutS OS=Nitrosomonas eutropha (strain
           C91) GN=mutS PE=3 SV=1
          Length = 880

 Score = 32.3 bits (72), Expect = 3.9,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 10/112 (8%)

Query: 97  FESLLELRCGKL-KRKLCHWLVNQFKPERNIIELHGQKLELCPKMFSKIMGVKDGGMAIK 155
             SLL++    +  R L HWL     P RN I L  Q+L+      S ++G K G +   
Sbjct: 304 LSSLLDICATSMGSRLLRHWL---HHPLRNRITLQ-QRLD----AVSDLIGAKPGILYAG 355

Query: 156 INGASDHIAEVRRIF-QPTVKGIRIRTLEEVIEQLDEANKIFKVAFTLFAIA 206
           I     HIA++ RI  +  ++  R R L  + + L    +I K+  T  AIA
Sbjct: 356 IRERLKHIADIERITSRIALRTARPRDLSGLRDSLTALPEIIKLITTSTAIA 407


>sp|Q1EA54|HAS1_COCIM ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis (strain RS)
           GN=HAS1 PE=3 SV=1
          Length = 604

 Score = 32.0 bits (71), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 38  PPEQKARYKKRDERMGNSGNSNSHSGDNEIVETKCVPERFCALVKSLSEEKKKAIREIGF 97
           P EQ    K   E+     + N+ S    + +T+  P++F  L  +LSE+  KAI+E+GF
Sbjct: 91  PVEQDDEQKSESEQQPELPSLNALS----LPQTENEPQKFTEL--NLSEKTLKAIQEMGF 144

Query: 98  ESLLELR 104
           E++ E++
Sbjct: 145 ETMTEIQ 151


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,430,098
Number of Sequences: 539616
Number of extensions: 3977189
Number of successful extensions: 11158
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 11151
Number of HSP's gapped (non-prelim): 24
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)