Query 023605
Match_columns 280
No_of_seqs 189 out of 356
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:41:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023605.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023605hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l8y_A Upstream binding factor 99.4 1.2E-13 4.1E-18 103.5 1.5 57 2-60 12-68 (91)
2 2d7l_A WD repeat and HMG-box D 99.3 6.1E-13 2.1E-17 98.1 4.1 58 2-59 13-70 (81)
3 1ckt_A High mobility group 1 p 99.3 6E-13 2E-17 95.3 2.0 58 2-59 9-67 (71)
4 1wgf_A Upstream binding factor 99.3 1.5E-12 5.2E-17 97.8 3.5 59 2-61 28-86 (90)
5 4a3n_A Transcription factor SO 99.3 1.2E-12 4.3E-17 93.5 1.9 59 2-61 10-68 (71)
6 1wz6_A HMG-box transcription f 99.2 2E-12 6.9E-17 95.3 2.9 59 2-61 15-73 (82)
7 1gt0_D Transcription factor SO 99.2 1.9E-12 6.4E-17 95.0 2.1 59 2-61 10-68 (80)
8 2eqz_A High mobility group pro 99.2 2.2E-12 7.7E-17 96.0 2.5 58 2-59 23-81 (86)
9 2cs1_A PMS1 protein homolog 1; 99.2 2.7E-12 9.1E-17 96.8 2.6 58 2-60 15-72 (92)
10 1aab_A High mobility group pro 99.2 1.2E-12 4E-17 96.8 0.3 60 2-61 15-75 (83)
11 1i11_A Transcription factor SO 99.2 3.7E-12 1.3E-16 93.7 2.4 59 2-61 12-70 (81)
12 1hry_A Human SRY; DNA, DNA-bin 99.2 3.3E-12 1.1E-16 92.7 2.1 58 2-60 12-69 (76)
13 1j46_A SRY, sex-determining re 99.2 3.4E-12 1.2E-16 94.7 2.2 59 2-61 12-70 (85)
14 2lef_A LEF-1 HMG, protein (lym 99.2 7.9E-12 2.7E-16 92.9 2.7 58 2-60 10-67 (86)
15 1hme_A High mobility group pro 99.2 6.7E-12 2.3E-16 91.3 2.0 59 1-60 13-71 (77)
16 2e6o_A HMG box-containing prot 99.2 5.7E-12 1.9E-16 94.0 1.4 58 2-60 25-82 (87)
17 2crj_A SWI/SNF-related matrix- 99.2 8.8E-12 3E-16 93.9 2.3 58 2-60 15-72 (92)
18 1k99_A Upstream binding factor 99.2 9.9E-12 3.4E-16 95.0 2.5 56 2-58 18-73 (99)
19 3u2b_C Transcription factor SO 99.1 9.8E-12 3.4E-16 90.8 1.9 59 2-61 10-68 (79)
20 3f27_D Transcription factor SO 99.1 1E-11 3.5E-16 91.6 1.9 59 2-61 14-72 (83)
21 2cto_A Novel protein; high mob 99.1 4.7E-12 1.6E-16 95.6 0.0 63 2-67 18-83 (93)
22 2co9_A Thymus high mobility gr 99.1 1.7E-11 5.7E-16 94.2 3.0 58 2-60 25-82 (102)
23 4euw_A Transcription factor SO 99.1 9.7E-12 3.3E-16 96.2 1.4 59 2-61 37-95 (106)
24 1wxl_A Single-strand recogniti 99.1 1.4E-11 4.7E-16 88.8 1.7 57 2-61 11-67 (73)
25 1cg7_A Protein (NON histone pr 99.1 9.1E-12 3.1E-16 94.0 -0.1 58 2-60 28-85 (93)
26 3nm9_A HMG-D, high mobility gr 99.1 2.3E-11 7.7E-16 87.6 1.2 55 2-59 11-65 (73)
27 3fgh_A Transcription factor A, 99.1 2.1E-11 7.2E-16 86.3 0.8 53 2-59 10-62 (67)
28 2lhj_A High mobility group pro 99.0 3E-11 1E-15 91.9 -0.2 59 1-59 29-88 (97)
29 2yuk_A Myeloid/lymphoid or mix 99.0 2.4E-11 8.3E-16 91.0 -1.5 55 2-60 30-85 (90)
30 2gzk_A Sex-determining region 98.9 3.3E-10 1.1E-14 93.4 1.9 57 2-59 96-152 (159)
31 1v63_A Nucleolar transcription 98.8 7.3E-10 2.5E-14 84.8 2.3 57 1-60 15-71 (101)
32 2yrq_A High mobility group pro 98.8 1.1E-09 3.7E-14 91.7 2.5 59 2-60 23-82 (173)
33 2yrq_A High mobility group pro 98.8 9.7E-10 3.3E-14 91.9 1.9 57 2-59 109-165 (173)
34 3tmm_A Transcription factor A, 98.8 1.4E-09 4.7E-14 95.7 1.9 58 2-60 49-106 (238)
35 3tq6_A Transcription factor A, 98.8 1.5E-09 5.3E-14 93.9 2.0 58 2-60 17-74 (214)
36 1v64_A Nucleolar transcription 98.7 1.5E-09 5.1E-14 84.1 0.7 54 2-60 25-78 (108)
37 2gzk_A Sex-determining region 98.6 1E-08 3.6E-13 84.4 1.9 58 2-60 12-69 (159)
38 3tq6_A Transcription factor A, 98.4 1.4E-08 4.7E-13 87.9 -1.9 53 2-59 122-174 (214)
39 3tmm_A Transcription factor A, 98.4 1.9E-08 6.4E-13 88.4 -2.4 54 2-60 154-207 (238)
40 2qgu_A Probable signal peptide 56.1 8.2 0.00028 32.4 3.4 31 18-48 70-100 (211)
41 2w9y_A CE-FAR-7, fatty acid/re 50.3 14 0.00049 29.1 3.7 82 7-95 49-134 (140)
42 1ois_A DNA topoisomerase I; DN 35.2 17 0.00059 30.8 2.1 52 5-56 66-130 (223)
43 2cqn_A Formin-binding protein 32.8 81 0.0028 21.9 5.0 46 6-51 12-67 (77)
44 2b9s_A Topoisomerase I-like pr 29.7 29 0.001 32.4 2.8 52 5-56 81-140 (432)
45 1ypy_A Virion membrane protein 27.3 29 0.001 28.5 2.1 52 68-123 52-118 (184)
46 3mab_A Uncharacterized protein 24.3 79 0.0027 22.8 3.8 42 12-53 42-86 (93)
47 1vej_A Riken cDNA 4931431F19; 22.6 68 0.0023 22.2 3.0 39 86-124 30-73 (74)
No 1
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.36 E-value=1.2e-13 Score=103.54 Aligned_cols=57 Identities=7% Similarity=0.025 Sum_probs=54.5
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
|++|++++|..|+++||+ .+++|+|.+|++|++||++||+||.++|.+.+.+|+.++
T Consensus 12 y~lf~~~~r~~~k~~~p~--~~~evsK~lGe~Wk~ls~~eK~pye~kA~~dK~rYekEm 68 (91)
T 1l8y_A 12 EEIWQQSVIGDYLARFKN--DRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYEREL 68 (91)
T ss_dssp HHHHHHHHHHHHHHHTTS--THHHHHHHHHHHHHTTGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999 589999999999999999999999999999999998866
No 2
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=6.1e-13 Score=98.07 Aligned_cols=58 Identities=16% Similarity=0.197 Sum_probs=52.7
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSN 59 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~ 59 (280)
||+|+++.|..++++||+.+.+..|+|.+|++|++||++||++|.++|+....+-..+
T Consensus 13 y~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~~~A~~d~~~~~~e 70 (81)
T 2d7l_A 13 FQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWANKAKGETASEGTE 70 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHHHHTTSSSSSSCCC
T ss_pred HHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhhh
Confidence 8999999999999999999658999999999999999999999999999987554333
No 3
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.29 E-value=6e-13 Score=95.33 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=54.5
Q ss_pred cccchHHHHHHHHhhCCCChh-hhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSV-TLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSN 59 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~-~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~ 59 (280)
||+|+++.|..++++||+.+. +..|+|.+|+.|++||++||++|.++|++.+.+|..+
T Consensus 9 y~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e 67 (71)
T 1ckt_A 9 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYERE 67 (71)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999873 7999999999999999999999999999999998754
No 4
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.27 E-value=1.5e-12 Score=97.76 Aligned_cols=59 Identities=24% Similarity=0.467 Sum_probs=56.8
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|++|.|.+++++||+.+ +..|+|.+|+.|++||++||++|.++|++.+.+|..+..
T Consensus 28 y~lF~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 86 (90)
T 1wgf_A 28 MFIFSEEKRRQLQEERPELS-ESELTRLLARMWNDLSEKKKAKYKAREAALKAQSERKSG 86 (90)
T ss_dssp HHHHHHHTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999986 999999999999999999999999999999999998874
No 5
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.25 E-value=1.2e-12 Score=93.52 Aligned_cols=59 Identities=27% Similarity=0.416 Sum_probs=56.0
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|++++|..++++||+.+ +.+|+|.+|+.|++||++||++|.++|.+.+.+|..+.+
T Consensus 10 f~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~ 68 (71)
T 4a3n_A 10 FMVWAKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHP 68 (71)
T ss_dssp HHHHHHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCc
Confidence 89999999999999999997 999999999999999999999999999999999987654
No 6
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.25 E-value=2e-12 Score=95.27 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=56.7
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|++++|..++++||+.+ +..|+|.+|+.|++||++||++|.++|++.+.+|..+.+
T Consensus 15 f~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~ 73 (82)
T 1wz6_A 15 FLLFCKRHRSLVRQEHPRLD-NRGATKILADWWAVLDPKEKQKYTDMAKEYKDAFMKANP 73 (82)
T ss_dssp HHHHHHHHHHHHHHHCSSSC-TTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHCCSCS
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhH
Confidence 89999999999999999986 899999999999999999999999999999999998874
No 7
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.23 E-value=1.9e-12 Score=94.97 Aligned_cols=59 Identities=15% Similarity=0.284 Sum_probs=56.0
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|+++.|..++++||+.+ +..|+|.+|+.|++||++||++|.++|++.+.+|..+.+
T Consensus 10 f~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~ 68 (80)
T 1gt0_D 10 FMVWSRGQRRKMAQENPKMH-NSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHP 68 (80)
T ss_dssp HHHHHHHHHHHHHTTSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCc
Confidence 89999999999999999986 999999999999999999999999999999999987763
No 8
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.2e-12 Score=95.95 Aligned_cols=58 Identities=10% Similarity=0.207 Sum_probs=54.7
Q ss_pred cccchHHHHHHHHhhCCCChh-hhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSV-TLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSN 59 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~-~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~ 59 (280)
||+|++|.|.+++++||+.+. +..|+|.+|+.|++||++||++|.++|++.+.+|..+
T Consensus 23 y~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e 81 (86)
T 2eqz_A 23 YAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDRE 81 (86)
T ss_dssp HHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999974 7999999999999999999999999999999998754
No 9
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.7e-12 Score=96.78 Aligned_cols=58 Identities=19% Similarity=0.210 Sum_probs=55.0
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|+++.|.+++++||+.+ +..|+|.+|+.|++||++||++|.++|++.+.+|..++
T Consensus 15 y~lF~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~ 72 (92)
T 2cs1_A 15 SALFVQDHRPQFLIENPKTS-LEDATLQIEELWKTLSEEEKLKYEEKATKDLERYNSQM 72 (92)
T ss_dssp HHHHHHHHHHHHHHHCCSSC-HHHHHHHHHHHHHSSCHHHHHHHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999996 89999999999999999999999999999999997654
No 10
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.22 E-value=1.2e-12 Score=96.76 Aligned_cols=60 Identities=12% Similarity=0.209 Sum_probs=56.4
Q ss_pred cccchHHHHHHHHhhCCCChh-hhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSV-TLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~-~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|++++|.+++++||+.+. +..|+|.+|+.|++||++||++|.++|++.+.+|..+++
T Consensus 15 y~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~~ 75 (83)
T 1aab_A 15 YAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMK 75 (83)
T ss_dssp HHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999873 799999999999999999999999999999999987764
No 11
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.21 E-value=3.7e-12 Score=93.66 Aligned_cols=59 Identities=14% Similarity=0.283 Sum_probs=56.2
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|++|+|..++++||+.+ +.+|+|.+|+.|++||++||++|.++|++.+.+|..+.+
T Consensus 12 f~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~p 70 (81)
T 1i11_A 12 FMVWAKDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYEEQARLSKQHLEKYP 70 (81)
T ss_dssp HHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999987 999999999999999999999999999999999988764
No 12
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.20 E-value=3.3e-12 Score=92.68 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=54.9
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|++|+|..++++||+.+ +..|+|.+|+.|++||++||++|.++|++.+.+|..+.
T Consensus 12 f~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~ 69 (76)
T 1hry_A 12 FIVWSRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKY 69 (76)
T ss_dssp HHHHHHHHHHHHHHHCSCCS-SSHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCcCCC-HHHHHHHHHhHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 89999999999999999986 89999999999999999999999999999999987655
No 13
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.20 E-value=3.4e-12 Score=94.73 Aligned_cols=59 Identities=14% Similarity=0.264 Sum_probs=55.7
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|++|+|..++++||+.+ +.+|+|.+|+.|++||++||++|.++|++.+.+|..+.+
T Consensus 12 f~lf~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~~ 70 (85)
T 1j46_A 12 FIVWSRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKYP 70 (85)
T ss_dssp HHHHHHHHHHHHHHHSTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCc
Confidence 89999999999999999986 999999999999999999999999999999999977663
No 14
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.17 E-value=7.9e-12 Score=92.92 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=54.7
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|++++|..++++||+.+ +..|+|.+|+.|++||++||++|.+.|+..+.+|..+.
T Consensus 10 f~lf~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~~~ 67 (86)
T 2lef_A 10 FMLYMKEMRANVVAESTLKE-SAAINQILGRRWHALSREEQAKYYELARKERQLHMQLY 67 (86)
T ss_dssp HHHHHHHHHHHHHHHSSCCC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999999999999985 99999999999999999999999999999999886655
No 15
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.16 E-value=6.7e-12 Score=91.26 Aligned_cols=59 Identities=15% Similarity=0.337 Sum_probs=55.3
Q ss_pred CcccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 1 MLCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
.||+|+.+.|..++++||+.+ +..|+|.+|+.|++||++||++|.++|+..+.+|..+.
T Consensus 13 af~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 71 (77)
T 1hme_A 13 AFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDI 71 (77)
T ss_dssp TTHHHHHHHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999986 99999999999999999999999999999999987654
No 16
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.16 E-value=5.7e-12 Score=93.98 Aligned_cols=58 Identities=7% Similarity=0.151 Sum_probs=54.5
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|++|+|..++++||+.+ +.+|+|.+|+.|++||++||++|.++|++.+.+|..+.
T Consensus 25 f~lf~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~~~~~~ 82 (87)
T 2e6o_A 25 FMLFAKKYRVEYTQMYPGKD-NRAISVILGDRWKKMKNEERRMYTLEAKALAEEQKRLN 82 (87)
T ss_dssp HHHHHHHTHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 89999999999999999986 99999999999999999999999999999999886544
No 17
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.15 E-value=8.8e-12 Score=93.91 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=54.9
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|++++|..++++||+.+ +..|+|.+|+.|++||++||++|.++|++.+.+|..+.
T Consensus 15 f~lF~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 72 (92)
T 2crj_A 15 YVRFLNERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRYLDEAEKEKQQYLKEL 72 (92)
T ss_dssp HHHHHHHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999987 99999999999999999999999999999999987654
No 18
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.15 E-value=9.9e-12 Score=94.98 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=53.1
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNS 58 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~ 58 (280)
||+|++|.|.+++++||+.+ +..|+|.+|+.|++||++||++|.++|++.+.+|..
T Consensus 18 f~lF~~~~r~~ik~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~Y~~ 73 (99)
T 1k99_A 18 YFRFFMEKRAKYAKLHPEMS-NLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFER 73 (99)
T ss_dssp HHHHHHHHHHHHHTTCTTSC-SHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999986 999999999999999999999999999999999543
No 19
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.14 E-value=9.8e-12 Score=90.77 Aligned_cols=59 Identities=19% Similarity=0.310 Sum_probs=55.7
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|+++.|..++++||+.+ +.+|+|.+|+.|++||++||++|.++|++.+.+|..+.+
T Consensus 10 f~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~p 68 (79)
T 3u2b_C 10 FMVWSQIERRKIMEQSPDMH-NAEISKRLGKRWKLLKDSDKIPFIQEAERLRLKHMADYP 68 (79)
T ss_dssp HHHHHHHHHHHHHTTSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999987 899999999999999999999999999999999877663
No 20
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.14 E-value=1e-11 Score=91.59 Aligned_cols=59 Identities=27% Similarity=0.416 Sum_probs=56.0
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|++++|..++++||+.+ +.+|+|.+|+.|++||++||++|.++|++.+.+|..+.+
T Consensus 14 f~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~~ 72 (83)
T 3f27_D 14 FMVWAKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRPFVEEAERLRVQHMQDHP 72 (83)
T ss_dssp HHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999997 999999999999999999999999999999999987663
No 21
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.7e-12 Score=95.58 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=54.3
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhh---hhcccCCChhhhhhhhhhhhhhcccCCCCCCCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHI---GKTYKELPPEQKARYKKRDERMGNSGNSNSHSGDNEI 67 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~---g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~~~k~~~ 67 (280)
||+|++|+|.+++.+ ++. +.+|+|.+ |++|++|+++||+||.++|.+.+.+|++..++..+++
T Consensus 18 f~lF~~e~R~~ik~e--~~~-~~eisK~l~~cGe~Wk~ls~eEK~pYe~~A~~~K~~y~kd~~~~~~~~ 83 (93)
T 2cto_A 18 YYFFVQEKIPELRRR--GLP-VARVADAIPYCSSDWALLREEEKEKYAEMAREWRAAQGKDPGPSEKQK 83 (93)
T ss_dssp HHHHHHTTHHHHHHH--TCC-CSSHHHHTGGGHHHHHHSCHHHHHHHHHHHHHHHHHHHHCSSCCCCCC
T ss_pred HHHHHHHHHHHHHHc--CCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 899999999999999 443 77788887 9999999999999999999999999988875444433
No 22
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=1.7e-11 Score=94.17 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=54.9
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|++++|..++++||+.+ +..|+|.+|+.|++||++||++|.++|++.+.+|..+.
T Consensus 25 y~lF~~~~r~~i~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~ 82 (102)
T 2co9_A 25 YALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDGLGEEQKQVYKKKTEAAKKEYLKQL 82 (102)
T ss_dssp HHHTHHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999986 99999999999999999999999999999999997644
No 23
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.12 E-value=9.7e-12 Score=96.18 Aligned_cols=59 Identities=17% Similarity=0.307 Sum_probs=56.0
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|+.++|..++++||+.+ +.+|+|.+|+.|++||++||++|.++|++.+.+|..+.+
T Consensus 37 f~lF~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e~~ 95 (106)
T 4euw_A 37 FMVWAQAARRKLADQYPHLH-NAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHP 95 (106)
T ss_dssp HHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999987 899999999999999999999999999999999987764
No 24
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.11 E-value=1.4e-11 Score=88.77 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=54.1
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNSH 61 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k~ 61 (280)
||+|+++.|.+++++||+.+ +..|+|.+|+.|++| +||++|.++|++.+.+|..+.+
T Consensus 11 y~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~l--~eK~~y~~~A~~~k~~y~~e~~ 67 (73)
T 1wxl_A 11 FMLWLNDTRESIKRENPGIK-VTEIAKKGGEMWKEL--KDKSKWEDAAAKDKQRYHDEMR 67 (73)
T ss_dssp HHHHHHHHHHHHHHHSTTCC-HHHHHHHHHHHHHTC--TTHHHHHHHHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhh--HhhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999986 899999999999999 8899999999999999998764
No 25
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.09 E-value=9.1e-12 Score=94.04 Aligned_cols=58 Identities=29% Similarity=0.456 Sum_probs=55.1
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|++|+|..++++||+.+ +..|+|.+|+.|++||++||++|.++|+..+.+|..+.
T Consensus 28 f~lF~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~y~~~A~~~k~~y~~e~ 85 (93)
T 1cg7_A 28 YMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTPEEKQPYEAKAQADKKRYESEK 85 (93)
T ss_dssp HHHHHHHHTSTTTTTCTTSC-HHHHTTTHHHHHHTTHHHHHHHHHHHHTTHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999996 99999999999999999999999999999999998653
No 26
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.07 E-value=2.3e-11 Score=87.64 Aligned_cols=55 Identities=11% Similarity=0.274 Sum_probs=52.2
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSN 59 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~ 59 (280)
||+|++|.|..++++||+.+ +.+|+|.+|+.|++||+ |++|.++|.+.+.+|..+
T Consensus 11 y~lf~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~--K~~y~~~A~~~k~~y~~~ 65 (73)
T 3nm9_A 11 YALWLNSARESIKRENPGIK-VTEVAKRGGELWRAMKD--KSEWEAKAAKAKDDYDRA 65 (73)
T ss_dssp HHHHHHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHH
Confidence 89999999999999999997 89999999999999998 999999999999998754
No 27
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.06 E-value=2.1e-11 Score=86.30 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=49.7
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSN 59 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~ 59 (280)
||+|+++.|..++.+|| .+++|.+|+.|++||++||++|.++|.+.+.+|..+
T Consensus 10 y~~F~~~~r~~~k~~~p-----~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~Y~~e 62 (67)
T 3fgh_A 10 YNVYVAERFQEAKGDSP-----QEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNE 62 (67)
T ss_dssp HHHHHHHHHHHHCSSSH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCH-----HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998 489999999999999999999999999999998654
No 28
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.01 E-value=3e-11 Score=91.86 Aligned_cols=59 Identities=19% Similarity=0.311 Sum_probs=54.5
Q ss_pred CcccchHHHHHHHHhhCCCCh-hhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCC
Q 023605 1 MLCFCSNEEVKRLRSENSDLS-VTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSN 59 (280)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~-~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~ 59 (280)
.||+|++|+|..++++||+.+ .+..|+|.+|+.|++||++||++|.++|++.+.+|..+
T Consensus 29 ay~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~y~~e 88 (97)
T 2lhj_A 29 SYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSDEEKKPYERMSDEDRVRYERE 88 (97)
T ss_dssp SSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCSTTTSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999974 28899999999999999999999999999999998754
No 29
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.99 E-value=2.4e-11 Score=90.95 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=49.5
Q ss_pred cccchHHHHHHHHhhCCCCh-hhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLS-VTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~-~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|++|+|..++++||+.+ .+++|+ +.|++|+++||+||.++|++.+.+|...+
T Consensus 30 f~lf~~e~R~kik~enP~~s~~~~eIs----e~Wk~ls~eeK~pY~~kA~~~K~~h~~~~ 85 (90)
T 2yuk_A 30 PVLYTNINFPNLKEEFPDWTTRVKQIA----KLWRKASSQERAPYVQKARDNRAALRINK 85 (90)
T ss_dssp HHHHHHHHCTTHHHHCCSHHHHHHHHH----HHHHHSCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhHHHHHHHCcCccchHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHHHhhH
Confidence 89999999999999999975 266666 99999999999999999999999987654
No 30
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=98.89 E-value=3.3e-10 Score=93.42 Aligned_cols=57 Identities=16% Similarity=0.363 Sum_probs=54.0
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSN 59 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~ 59 (280)
||+|++|.|..++.+||+.+ +.+|+|.+|+.|++||++||++|.++|.+.+.+|..+
T Consensus 96 y~lf~~~~r~~~~~~~p~~~-~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 152 (159)
T 2gzk_A 96 FFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 152 (159)
T ss_dssp HHHHHHHHHHHHHHHCSCCC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHhhHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999986 9999999999999999999999999999999998754
No 31
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.85 E-value=7.3e-10 Score=84.83 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=47.7
Q ss_pred CcccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 1 MLCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 1 ~~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
.||+|++|++. ..++|+++ +..++|.+|++|++|+++||+||.++|++.+.+|..+.
T Consensus 15 ay~lF~~e~~~--~p~~~~~~-~~eisK~lge~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~ 71 (101)
T 1v63_A 15 GYQKFSQELLS--NGELNHLP-LKERMVEIGSRWQRISQSQKEHYKKLAEEQQRQYKVHL 71 (101)
T ss_dssp SHHHHHHHHHH--HCTTTTSC-HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999974 22333343 78999999999999999999999999999999998764
No 32
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.1e-09 Score=91.68 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=54.4
Q ss_pred cccchHHHHHHHHhhCCCCh-hhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLS-VTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~-~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|+.+.|.+++++||+.+ .+..|+|.+|+.|++||++||++|.+.|.+.+.+|..+.
T Consensus 23 y~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~e~ 82 (173)
T 2yrq_A 23 YAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREM 82 (173)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999963 599999999999999999999999999999999886543
No 33
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=9.7e-10 Score=91.95 Aligned_cols=57 Identities=16% Similarity=0.363 Sum_probs=54.2
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSN 59 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~ 59 (280)
||+|+++.|..++.+||+.+ +.+|+|.+|+.|++||++||++|.++|++.+.+|..+
T Consensus 109 f~lf~~~~r~~~~~~~p~~~-~~ei~k~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~ 165 (173)
T 2yrq_A 109 FFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKD 165 (173)
T ss_dssp HHHHHHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999986 9999999999999999999999999999999998754
No 34
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=98.78 E-value=1.4e-09 Score=95.68 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=55.5
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|+.+.|..++++||+.+ +..|.|.+|++|++||++||++|.++|.+.+.+|+.++
T Consensus 49 y~lF~~e~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~ 106 (238)
T 3tmm_A 49 YLRFSKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEI 106 (238)
T ss_dssp HHHHHHHHHHHHHHHSTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999997 99999999999999999999999999999999998764
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=98.77 E-value=1.5e-09 Score=93.90 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=55.5
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|+.+.|..++++||+.+ +..|.|.+|++|++||++||++|.++|.+.+.+|+.+.
T Consensus 17 y~lF~~~~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~~~A~~~k~~y~~e~ 74 (214)
T 3tq6_A 17 YLRFSKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQDAYRAEWQVYKEEI 74 (214)
T ss_dssp HHHHHHHHHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHccCHHhhhHHHHHHHHHHHHHHHHh
Confidence 89999999999999999997 99999999999999999999999999999999998653
No 36
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=98.74 E-value=1.5e-09 Score=84.11 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=49.5
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|++|+|.+++ ++ .+..++|.+|+.|++||++||++|.++|+..+.+|..+.
T Consensus 25 y~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK~~Y~~~A~~~k~~Y~~e~ 78 (108)
T 1v64_A 25 YSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEKDAYHKKCDQKKKDYEVEL 78 (108)
T ss_dssp HHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999988 44 489999999999999999999999999999999998653
No 37
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=98.60 E-value=1e-08 Score=84.38 Aligned_cols=58 Identities=14% Similarity=0.275 Sum_probs=53.7
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|+.+.|..++++||++. +..|+|.+|+.|++||++||++|.+.|...+.+|..+.
T Consensus 12 f~~~~~~~~~ki~~~~P~~~-~~eisk~lg~~Wk~ls~~eK~~y~~~A~~~k~~y~~~~ 69 (159)
T 2gzk_A 12 FIVWSRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKWPFFQEAQKLQAMHREKY 69 (159)
T ss_dssp HHHHHHHHHHHHHHHCSSCC-HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHhhHHHhccHHHHHHHHHHHHHHHh
Confidence 78999999999999999976 99999999999999999999999999999998876544
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=98.42 E-value=1.4e-08 Score=87.88 Aligned_cols=53 Identities=11% Similarity=0.192 Sum_probs=49.8
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSN 59 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~ 59 (280)
||+|++|.|..++.+||+ .|+|.+|+.|++||++||+||.++|.+.+.+|..+
T Consensus 122 y~lF~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e 174 (214)
T 3tq6_A 122 YNVYVAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNE 174 (214)
T ss_dssp HHHHHHHHTTTSSCSSHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhccCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999986 69999999999999999999999999999999764
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=98.37 E-value=1.9e-08 Score=88.44 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=50.3
Q ss_pred cccchHHHHHHHHhhCCCChhhhhhhhhhhhcccCCChhhhhhhhhhhhhhcccCCCCC
Q 023605 2 LCFCSNEEVKRLRSENSDLSVTLGLRKHIGKTYKELPPEQKARYKKRDERMGNSGNSNS 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~~~~k 60 (280)
||+|++|.|..++.+||+ .|+|.+|+.|++|+++||+||.++|.+.+.+|+.+.
T Consensus 154 y~lF~~e~r~~~k~~~p~-----ei~k~lg~~Wk~ls~~eK~~Y~~~A~~~k~~Y~~e~ 207 (238)
T 3tmm_A 154 YNVYVAERFQEAKGDSPQ-----EKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEM 207 (238)
T ss_dssp HHHHHHHHTTTSCCSSHH-----HHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999986 699999999999999999999999999999997643
No 40
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=56.08 E-value=8.2 Score=32.39 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCChhhhhhhhhhhhcccCCChhhhhhhhhh
Q 023605 18 SDLSVTLGLRKHIGKTYKELPPEQKARYKKR 48 (280)
Q Consensus 18 p~~~~~~~~~k~~g~~wk~l~~~~k~~~~~~ 48 (280)
|....-......+|..|+.+|+++++.|.+-
T Consensus 70 p~~D~~~~a~~vLG~~wr~at~~Qr~~F~~~ 100 (211)
T 2qgu_A 70 PRADFKRTTQIAMGRFWSQATPEQQQQIQDG 100 (211)
T ss_dssp GGBCHHHHHHHHHGGGTTTSCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHhHhHhhCCHHHHHHHHHH
Confidence 4444334446778999999999999987653
No 41
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=50.32 E-value=14 Score=29.06 Aligned_cols=82 Identities=18% Similarity=0.127 Sum_probs=54.8
Q ss_pred HHHHHHHHhhCCCChh-hhhhhhhhhhcccCCChhhhhhhhhhh---hhhcccCCCCCCCCCCCCccccccHHHHHHHHh
Q 023605 7 NEEVKRLRSENSDLSV-TLGLRKHIGKTYKELPPEQKARYKKRD---ERMGNSGNSNSHSGDNEIVETKCVPERFCALVK 82 (280)
Q Consensus 7 ~~~~~~~~~~~p~~~~-~~~~~k~~g~~wk~l~~~~k~~~~~~~---~~~k~~~~~~k~~~k~~~~~~RcS~~~~~~~i~ 82 (280)
+|+...+|+++|++-+ +..+.-.+-.|-..|+|+.|+...+-- .....++-.+.++. .-..+.+...++
T Consensus 49 ~e~i~alK~KSp~L~~K~~~l~~~lk~Ki~~L~Peak~Fv~kli~~~r~l~~~~~~G~k~~-------~~~lK~~~~~yk 121 (140)
T 2w9y_A 49 GEMIDEVSKKHPELGKRLATVLEGNKKRLDGLSPAAVEYAKKLIHMVTTTLCSLTVGKPID-------DADAKRLHQEFQ 121 (140)
T ss_dssp TTHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------THHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHH
Confidence 4688889999998744 566666777799999999988554432 23333322222211 122456778889
Q ss_pred hCCHHHHHHHHHc
Q 023605 83 SLSEEKKKAIREI 95 (280)
Q Consensus 83 ~Ls~~qk~~I~~~ 95 (280)
.||++.++-+++.
T Consensus 122 aLS~~aK~dL~k~ 134 (140)
T 2w9y_A 122 SLSSEDQAALRKN 134 (140)
T ss_dssp TSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHh
Confidence 9999999888763
No 42
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A {Saccharomyces cerevisiae} SCOP: e.15.1.1
Probab=35.20 E-value=17 Score=30.76 Aligned_cols=52 Identities=12% Similarity=0.138 Sum_probs=28.1
Q ss_pred chHHHHHHHHhhC-----CCChhhh-----hh---hhhhhhcccCCChhhhhhhhhhhhhhcccC
Q 023605 5 CSNEEVKRLRSEN-----SDLSVTL-----GL---RKHIGKTYKELPPEQKARYKKRDERMGNSG 56 (280)
Q Consensus 5 ~~~~~~~~~~~~~-----p~~~~~~-----~~---~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~ 56 (280)
|.+|||+.+.+.. -.++.++ .+ -..-.++-|+||.|||+.--+.+.+....|
T Consensus 66 Ff~Df~~~l~~~~~~~~~~~I~~~~kcDFs~i~~~~~~~~e~kk~~skEEKk~~Keek~~~~~~y 130 (223)
T 1ois_A 66 FFNDFLQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDY 130 (223)
T ss_dssp HHHHHHHHHHHTTCCTTCCCCCCGGGEECHHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccCcccCchhhCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhc
Confidence 7899999998754 1222221 11 122345667899988887555555544444
No 43
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=32.80 E-value=81 Score=21.90 Aligned_cols=46 Identities=9% Similarity=0.187 Sum_probs=30.6
Q ss_pred hHHHHHHHHhhCCCChh---hhhhhhhhhh--cccCCCh-hhhh----hhhhhhhh
Q 023605 6 SNEEVKRLRSENSDLSV---TLGLRKHIGK--TYKELPP-EQKA----RYKKRDER 51 (280)
Q Consensus 6 ~~~~~~~~~~~~p~~~~---~~~~~k~~g~--~wk~l~~-~~k~----~~~~~~~~ 51 (280)
.++|+..++..+|.++. -..|.+.... .|+++++ +++. .|+..-++
T Consensus 12 ~~~F~~mLk~~~p~I~~~s~We~vr~~~e~~~~fkav~~E~eR~~lFeeYi~~Lke 67 (77)
T 2cqn_A 12 ESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEH 67 (77)
T ss_dssp HHHHHHHHHTCSSCCCTTCCHHHHHHHHTTSHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHHccCHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 36899999999998765 4455444443 8999955 5665 45544333
No 44
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=29.65 E-value=29 Score=32.37 Aligned_cols=52 Identities=8% Similarity=-0.063 Sum_probs=34.4
Q ss_pred chHHHHHHHHhhCCCChhhhh-----h---hhhhhhcccCCChhhhhhhhhhhhhhcccC
Q 023605 5 CSNEEVKRLRSENSDLSVTLG-----L---RKHIGKTYKELPPEQKARYKKRDERMGNSG 56 (280)
Q Consensus 5 ~~~~~~~~~~~~~p~~~~~~~-----~---~k~~g~~wk~l~~~~k~~~~~~~~~~k~~~ 56 (280)
|.+|||+.+..+.-.++.+.. + -..--++-|+||.|||+.-.+.+++....|
T Consensus 81 Ff~d~~~~l~~~~~~i~~~~~cdF~~i~~~~~~~~e~kk~~~~eek~~~k~~~~~~~~~y 140 (432)
T 2b9s_A 81 FFESWREILDKRQHPIRRLELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPY 140 (432)
T ss_dssp HHHHHHHHHTTSCCCCCCGGGEECHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhccCCcccCchhhCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhc
Confidence 789999999744434333221 1 122345678999999998777777777666
No 45
>1ypy_A Virion membrane protein; orthopox, variola virus, smallpox, L1, viral protein; 1.51A {Vaccinia virus} PDB: 2i9l_I
Probab=27.28 E-value=29 Score=28.45 Aligned_cols=52 Identities=12% Similarity=0.264 Sum_probs=38.3
Q ss_pred ccccccH----------HHHHHHHhhCCHHHHHHHH-----HcCChhhhcccccccCHHHHHHHhcccCCC
Q 023605 68 VETKCVP----------ERFCALVKSLSEEKKKAIR-----EIGFESLLELRCGKLKRKLCHWLVNQFKPE 123 (280)
Q Consensus 68 ~~~RcS~----------~~~~~~i~~Ls~~qk~~I~-----~~GFg~LL~i~~~~l~~~l~~wL~~~~d~~ 123 (280)
+.++||. ..+.+.++.|+++||..|. ++|..- .-..+.+++-..|.++...+
T Consensus 52 V~N~C~ana~~sf~lli~a~~Et~~~Lp~~qk~~i~~~~ta~lgId~----~v~~~~~d~~t~l~q~C~A~ 118 (184)
T 1ypy_A 52 VKNMCSADADAQLDAVLSAATETYSGLTPEQKAYVPAMFTAALNIQT----SVNTVVRDFENYVKQTCNSS 118 (184)
T ss_dssp EEECBCSCHHHHHHHHHHHHHHHHHTSCHHHHTTHHHHHHHHHCCCC----CTTTHHHHHHHHHHHHSSSH
T ss_pred EEEhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHhhhhhhHHhceec----cccccccchhhHHHhhccch
Confidence 4677875 6788999999999999994 787653 22244677888888877543
No 46
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=24.34 E-value=79 Score=22.83 Aligned_cols=42 Identities=17% Similarity=0.178 Sum_probs=29.1
Q ss_pred HHHhhCCCChh---hhhhhhhhhhcccCCChhhhhhhhhhhhhhc
Q 023605 12 RLRSENSDLSV---TLGLRKHIGKTYKELPPEQKARYKKRDERMG 53 (280)
Q Consensus 12 ~~~~~~p~~~~---~~~~~k~~g~~wk~l~~~~k~~~~~~~~~~k 53 (280)
.+++.+|++.. .+-+|=.-|..|..+++++|+.-.+.-...|
T Consensus 42 rLk~~~~~~~~~~L~aL~gAi~G~~w~~l~~~~K~~L~~~~~~lk 86 (93)
T 3mab_A 42 RIWENDSSVCMSELYALEGAVQGIRWHGLDEAKKIELKKFHQSLE 86 (93)
T ss_dssp HHHHHCTTCCHHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCCCHHHHHHHHHHHcCCcHHHCCHHHHHHHHHHHHHhh
Confidence 45677777653 2333777889999999999987655544443
No 47
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.59 E-value=68 Score=22.23 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=24.3
Q ss_pred HHHHHHHHHcCChh----hhcccccccCH-HHHHHHhcccCCCc
Q 023605 86 EEKKKAIREIGFES----LLELRCGKLKR-KLCHWLVNQFKPER 124 (280)
Q Consensus 86 ~~qk~~I~~~GFg~----LL~i~~~~l~~-~l~~wL~~~~d~~t 124 (280)
.+|.+-+.+|||.. +--+....-+. .-+.||.++.++.+
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~~~~~s 73 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGASGPSS 73 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCCCCCC
Confidence 56778899999942 22222222232 34779999888765
Done!