Query 023606
Match_columns 280
No_of_seqs 124 out of 1167
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 05:17:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 3.5E-51 7.6E-56 372.9 22.4 210 36-266 1-219 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.2E-50 4.7E-55 363.3 21.1 220 30-267 6-231 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 5.2E-48 1.1E-52 357.0 22.9 216 33-265 10-235 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 1.8E-47 3.8E-52 349.5 23.0 212 38-266 1-219 (317)
5 COG0656 ARA1 Aldo/keto reducta 100.0 1.6E-47 3.4E-52 338.7 18.6 195 35-262 2-200 (280)
6 PRK10625 tas putative aldo-ket 100.0 1.3E-46 2.9E-51 347.6 23.7 211 36-266 1-247 (346)
7 PLN02587 L-galactose dehydroge 100.0 3.7E-46 8.1E-51 340.4 21.9 211 38-265 1-217 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 1.2E-44 2.6E-49 325.3 22.4 208 38-267 1-213 (285)
9 KOG1577 Aldo/keto reductase fa 100.0 3.5E-43 7.6E-48 311.3 16.1 191 38-260 6-215 (300)
10 PRK14863 bifunctional regulato 100.0 2.1E-42 4.5E-47 312.6 17.8 198 45-263 2-202 (292)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.3E-42 7.2E-47 309.1 18.0 201 50-271 1-206 (283)
12 PRK10376 putative oxidoreducta 100.0 1.3E-41 2.8E-46 307.2 21.2 196 39-258 10-218 (290)
13 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.3E-41 2.7E-46 303.9 20.1 185 46-262 1-188 (267)
14 COG4989 Predicted oxidoreducta 100.0 2.7E-42 5.8E-47 294.8 12.5 208 36-263 1-219 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 9.4E-40 2E-44 293.0 18.5 187 37-259 5-193 (275)
16 KOG1576 Predicted oxidoreducta 100.0 6.5E-40 1.4E-44 282.2 13.2 222 28-271 14-248 (342)
17 COG1453 Predicted oxidoreducta 100.0 5.9E-38 1.3E-42 281.4 17.3 207 36-264 1-214 (391)
18 KOG3023 Glutamate-cysteine lig 98.4 5.2E-07 1.1E-11 77.7 6.1 73 176-253 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 92.9 4.9 0.00011 36.5 14.7 155 73-257 134-290 (316)
20 KOG0023 Alcohol dehydrogenase, 92.6 0.53 1.1E-05 43.1 7.5 154 31-249 169-324 (360)
21 cd03315 MLE_like Muconate lact 92.2 5.4 0.00012 35.3 13.6 157 74-258 86-243 (265)
22 cd03316 MR_like Mandelate race 91.2 6.9 0.00015 36.1 13.8 155 73-254 139-299 (357)
23 PF03102 NeuB: NeuB family; I 90.6 2.2 4.7E-05 37.6 9.2 120 72-212 53-192 (241)
24 PRK08392 hypothetical protein; 90.5 10 0.00022 32.5 14.2 155 75-252 14-180 (215)
25 PRK13796 GTPase YqeH; Provisio 90.5 4.5 9.7E-05 37.9 11.7 144 49-209 34-180 (365)
26 PRK00164 moaA molybdenum cofac 89.9 14 0.00031 33.7 14.5 162 70-252 47-229 (331)
27 TIGR02370 pyl_corrinoid methyl 89.3 2.2 4.7E-05 36.3 7.9 150 72-247 9-164 (197)
28 PRK08609 hypothetical protein; 89.0 17 0.00036 36.3 15.0 161 77-251 351-523 (570)
29 PRK13361 molybdenum cofactor b 87.9 22 0.00047 32.6 14.9 133 70-221 43-188 (329)
30 cd02070 corrinoid_protein_B12- 87.1 5.9 0.00013 33.7 9.3 149 72-246 8-161 (201)
31 PRK05588 histidinol-phosphatas 86.9 21 0.00045 31.4 14.9 165 75-253 16-216 (255)
32 PRK07328 histidinol-phosphatas 86.7 22 0.00048 31.5 16.3 167 75-251 18-226 (269)
33 TIGR01928 menC_lowGC/arch o-su 86.5 26 0.00056 32.1 14.1 153 74-258 133-286 (324)
34 PRK14461 ribosomal RNA large s 85.8 12 0.00026 35.1 11.2 103 165-267 231-368 (371)
35 PRK06740 histidinol-phosphatas 85.0 21 0.00046 32.9 12.5 102 149-252 156-290 (331)
36 KOG0259 Tyrosine aminotransfer 84.7 36 0.00078 32.2 16.2 177 73-268 79-282 (447)
37 cd03321 mandelate_racemase Man 83.8 22 0.00048 32.9 12.2 152 75-253 143-295 (355)
38 COG2089 SpsE Sialic acid synth 82.3 27 0.00059 32.2 11.5 122 71-212 86-226 (347)
39 TIGR02666 moaA molybdenum cofa 82.1 41 0.00088 30.8 14.2 132 71-221 42-187 (334)
40 PRK07945 hypothetical protein; 81.9 43 0.00093 30.9 16.4 162 75-251 111-289 (335)
41 PF00682 HMGL-like: HMGL-like 81.7 28 0.0006 30.0 11.4 128 72-217 11-151 (237)
42 COG0279 GmhA Phosphoheptose is 81.5 18 0.00039 30.0 9.2 122 75-209 28-154 (176)
43 cd02069 methionine_synthase_B1 80.7 10 0.00022 32.7 8.1 23 72-94 12-34 (213)
44 COG1748 LYS9 Saccharopine dehy 80.7 9.7 0.00021 36.0 8.5 80 75-173 79-158 (389)
45 TIGR03597 GTPase_YqeH ribosome 80.1 32 0.00069 32.1 11.8 143 49-208 28-173 (360)
46 cd03325 D-galactonate_dehydrat 79.4 53 0.0011 30.4 14.1 158 75-253 125-285 (352)
47 TIGR01278 DPOR_BchB light-inde 78.5 34 0.00073 33.5 11.9 140 110-256 70-243 (511)
48 cd03318 MLE Muconate Lactonizi 77.1 62 0.0014 30.0 13.9 82 164-253 215-297 (365)
49 cd03323 D-glucarate_dehydratas 76.4 56 0.0012 30.9 12.4 152 73-255 168-321 (395)
50 PRK14017 galactonate dehydrata 76.4 68 0.0015 30.0 13.3 157 74-254 125-287 (382)
51 cd01965 Nitrogenase_MoFe_beta_ 76.3 17 0.00037 34.6 9.0 106 110-222 66-188 (428)
52 cd03174 DRE_TIM_metallolyase D 76.3 19 0.00041 31.5 8.7 106 141-253 15-135 (265)
53 PLN02681 proline dehydrogenase 75.3 82 0.0018 30.5 13.4 170 76-257 221-413 (455)
54 PF07021 MetW: Methionine bios 75.2 17 0.00036 31.0 7.5 154 79-260 5-173 (193)
55 cd03327 MR_like_2 Mandelate ra 75.2 68 0.0015 29.5 13.8 159 73-253 120-280 (341)
56 TIGR03822 AblA_like_2 lysine-2 74.6 69 0.0015 29.3 15.6 136 72-221 119-263 (321)
57 cd03322 rpsA The starvation se 74.1 75 0.0016 29.5 14.5 146 74-254 127-273 (361)
58 cd03324 rTSbeta_L-fuconate_deh 73.3 87 0.0019 29.9 13.0 152 74-253 197-352 (415)
59 PRK14457 ribosomal RNA large s 72.8 50 0.0011 30.7 10.8 157 97-265 154-344 (345)
60 TIGR03586 PseI pseudaminic aci 72.3 79 0.0017 29.2 11.9 130 72-228 74-225 (327)
61 PRK05985 cytosine deaminase; P 71.7 87 0.0019 29.2 13.8 169 75-257 98-276 (391)
62 TIGR01862 N2-ase-Ialpha nitrog 71.1 52 0.0011 31.6 10.9 111 95-221 96-222 (443)
63 TIGR02668 moaA_archaeal probab 70.0 82 0.0018 28.2 14.0 129 71-219 39-180 (302)
64 cd00308 enolase_like Enolase-s 69.7 26 0.00056 30.2 7.8 88 163-258 120-208 (229)
65 cd06543 GH18_PF-ChiA-like PF-C 69.6 88 0.0019 28.4 14.3 187 50-259 71-266 (294)
66 KOG1549 Cysteine desulfurase N 68.8 31 0.00068 32.9 8.5 91 164-259 133-224 (428)
67 TIGR02534 mucon_cyclo muconate 68.6 1E+02 0.0022 28.7 13.9 84 163-254 213-297 (368)
68 cd00739 DHPS DHPS subgroup of 68.4 85 0.0019 27.8 11.0 108 79-201 87-209 (257)
69 COG1149 MinD superfamily P-loo 68.2 13 0.00028 33.4 5.6 93 154-257 155-250 (284)
70 CHL00076 chlB photochlorophyll 67.6 73 0.0016 31.3 11.2 140 110-256 70-248 (513)
71 cd04728 ThiG Thiazole synthase 67.4 90 0.002 27.6 14.0 106 140-252 71-181 (248)
72 cd00740 MeTr MeTr subgroup of 66.9 71 0.0015 28.3 10.1 108 142-258 23-131 (252)
73 PRK09058 coproporphyrinogen II 66.6 1.1E+02 0.0024 29.4 12.1 81 80-170 165-254 (449)
74 TIGR03569 NeuB_NnaB N-acetylne 66.5 1.1E+02 0.0024 28.3 12.4 135 72-228 73-226 (329)
75 cd01974 Nitrogenase_MoFe_beta 66.2 45 0.00097 31.9 9.4 116 94-221 63-192 (435)
76 PRK06015 keto-hydroxyglutarate 65.5 37 0.0008 29.1 7.7 88 143-251 14-102 (201)
77 cd03329 MR_like_4 Mandelate ra 64.6 1.2E+02 0.0026 28.1 14.4 155 73-253 143-299 (368)
78 COG0635 HemN Coproporphyrinoge 64.5 76 0.0016 30.3 10.5 61 140-202 199-276 (416)
79 cd07943 DRE_TIM_HOA 4-hydroxy- 64.4 1E+02 0.0022 27.2 16.3 24 72-95 19-42 (263)
80 PRK02910 light-independent pro 64.3 1E+02 0.0022 30.4 11.5 139 110-256 70-243 (519)
81 PRK14464 ribosomal RNA large s 64.0 1.3E+02 0.0027 28.1 12.8 91 174-266 223-332 (344)
82 PRK14463 ribosomal RNA large s 63.5 88 0.0019 29.1 10.5 102 163-266 207-340 (349)
83 PF01081 Aldolase: KDPG and KH 63.4 42 0.00091 28.6 7.6 62 177-251 44-106 (196)
84 PF05690 ThiG: Thiazole biosyn 63.3 1.1E+02 0.0023 27.1 10.8 118 126-253 60-182 (247)
85 TIGR01182 eda Entner-Doudoroff 62.8 49 0.0011 28.4 8.0 88 143-251 18-106 (204)
86 COG0135 TrpF Phosphoribosylant 62.6 40 0.00086 29.1 7.4 80 156-250 19-102 (208)
87 PRK07329 hypothetical protein; 62.5 1.1E+02 0.0023 26.8 11.7 103 148-252 82-214 (246)
88 COG2069 CdhD CO dehydrogenase/ 62.5 93 0.002 28.5 9.8 96 152-257 157-262 (403)
89 PRK15408 autoinducer 2-binding 62.2 1.3E+02 0.0028 27.6 12.5 89 126-222 23-111 (336)
90 cd07940 DRE_TIM_IPMS 2-isoprop 62.2 1.1E+02 0.0024 27.0 12.5 88 174-264 140-232 (268)
91 COG1168 MalY Bifunctional PLP- 62.0 1.4E+02 0.0031 28.1 13.3 133 74-229 40-204 (388)
92 PRK14459 ribosomal RNA large s 61.7 97 0.0021 29.2 10.4 99 164-262 240-370 (373)
93 cd01967 Nitrogenase_MoFe_alpha 61.4 1.3E+02 0.0028 28.2 11.4 105 110-221 72-191 (406)
94 PRK07003 DNA polymerase III su 61.2 1.7E+02 0.0037 30.5 12.5 69 142-211 99-169 (830)
95 PRK11865 pyruvate ferredoxin o 61.1 86 0.0019 28.6 9.7 117 77-213 164-289 (299)
96 PF00148 Oxidored_nitro: Nitro 60.9 42 0.00092 31.4 8.0 140 110-255 59-226 (398)
97 COG4464 CapC Capsular polysacc 60.7 36 0.00078 29.6 6.6 32 70-101 15-46 (254)
98 cd07945 DRE_TIM_CMS Leptospira 60.2 1.3E+02 0.0028 27.0 12.2 118 142-264 108-234 (280)
99 TIGR03471 HpnJ hopanoid biosyn 59.8 85 0.0018 30.3 10.1 68 175-247 321-392 (472)
100 cd01981 Pchlide_reductase_B Pc 58.8 1.6E+02 0.0035 27.9 11.7 141 110-256 70-247 (430)
101 cd03328 MR_like_3 Mandelate ra 58.2 1.6E+02 0.0034 27.3 14.9 153 73-253 138-293 (352)
102 cd04742 NPD_FabD 2-Nitropropan 58.2 52 0.0011 31.5 8.0 72 181-254 29-103 (418)
103 PRK14478 nitrogenase molybdenu 57.6 1.4E+02 0.003 29.0 11.1 111 93-221 96-222 (475)
104 COG1140 NarY Nitrate reductase 57.5 3.9 8.4E-05 38.2 0.3 55 189-249 263-318 (513)
105 TIGR01428 HAD_type_II 2-haloal 57.1 51 0.0011 27.3 7.1 63 148-211 62-128 (198)
106 TIGR02026 BchE magnesium-proto 57.0 93 0.002 30.3 9.9 68 175-247 321-392 (497)
107 PRK15072 bifunctional D-altron 56.4 53 0.0012 31.1 7.9 84 163-254 232-316 (404)
108 COG2200 Rtn c-di-GMP phosphodi 56.2 1.4E+02 0.0031 26.2 11.0 133 110-253 69-213 (256)
109 TIGR02026 BchE magnesium-proto 56.0 2E+02 0.0044 28.0 12.0 21 142-162 222-242 (497)
110 TIGR03822 AblA_like_2 lysine-2 56.0 1.5E+02 0.0033 27.0 10.6 22 238-259 219-240 (321)
111 PRK00208 thiG thiazole synthas 55.7 1.5E+02 0.0032 26.3 14.1 106 140-252 71-181 (250)
112 PRK13478 phosphonoacetaldehyde 55.7 68 0.0015 28.1 8.0 38 175-213 102-139 (267)
113 COG3623 SgaU Putative L-xylulo 55.6 60 0.0013 28.7 7.2 78 43-135 65-155 (287)
114 TIGR00048 radical SAM enzyme, 55.5 82 0.0018 29.4 8.8 100 165-266 218-348 (355)
115 PRK08195 4-hyroxy-2-oxovalerat 55.5 1.7E+02 0.0038 27.0 17.6 24 72-95 22-45 (337)
116 PF00682 HMGL-like: HMGL-like 55.1 90 0.002 26.8 8.6 102 142-249 11-124 (237)
117 PRK13958 N-(5'-phosphoribosyl) 55.1 31 0.00067 29.5 5.5 66 154-226 16-83 (207)
118 TIGR00126 deoC deoxyribose-pho 55.0 72 0.0016 27.5 7.8 77 73-163 130-206 (211)
119 cd03317 NAAAR N-acylamino acid 54.0 1.8E+02 0.0039 26.7 14.1 149 75-255 139-288 (354)
120 TIGR01422 phosphonatase phosph 53.9 71 0.0015 27.6 7.8 39 175-214 100-138 (253)
121 cd01966 Nitrogenase_NifN_1 Nit 53.8 1E+02 0.0022 29.4 9.3 109 110-221 66-189 (417)
122 PRK05283 deoxyribose-phosphate 53.1 72 0.0016 28.4 7.6 80 76-164 148-227 (257)
123 TIGR01496 DHPS dihydropteroate 52.7 1.4E+02 0.0031 26.4 9.5 99 142-254 20-126 (257)
124 TIGR02932 vnfK_nitrog V-contai 52.6 1.5E+02 0.0033 28.6 10.4 116 94-222 67-198 (457)
125 cd01968 Nitrogenase_NifE_I Nit 52.5 1.6E+02 0.0034 27.8 10.4 113 93-221 63-189 (410)
126 cd02932 OYE_YqiM_FMN Old yello 52.4 1.9E+02 0.0041 26.5 12.5 90 127-225 220-320 (336)
127 PRK14455 ribosomal RNA large s 51.9 2E+02 0.0044 26.8 14.7 96 166-263 223-349 (356)
128 COG0329 DapA Dihydrodipicolina 51.9 1.9E+02 0.004 26.3 10.8 114 142-259 22-144 (299)
129 PF03279 Lip_A_acyltrans: Bact 51.7 1.3E+02 0.0029 26.7 9.4 67 78-164 110-176 (295)
130 PRK05692 hydroxymethylglutaryl 51.6 77 0.0017 28.6 7.8 104 142-251 23-138 (287)
131 cd07944 DRE_TIM_HOA_like 4-hyd 51.6 1.1E+02 0.0024 27.2 8.7 30 140-170 15-44 (266)
132 TIGR00735 hisF imidazoleglycer 51.4 1.7E+02 0.0037 25.6 13.4 88 154-249 163-253 (254)
133 PLN02951 Molybderin biosynthes 51.3 2.1E+02 0.0046 26.8 14.7 153 72-245 90-262 (373)
134 cd07948 DRE_TIM_HCS Saccharomy 51.2 1.8E+02 0.0038 25.8 13.5 25 72-96 19-43 (262)
135 PLN00191 enolase 50.8 94 0.002 30.1 8.6 97 143-252 296-394 (457)
136 TIGR01060 eno phosphopyruvate 50.7 1.1E+02 0.0025 29.2 9.1 83 163-253 278-365 (425)
137 PRK00077 eno enolase; Provisio 50.6 1.1E+02 0.0024 29.2 9.0 96 143-251 262-361 (425)
138 PRK06552 keto-hydroxyglutarate 50.5 91 0.002 26.8 7.7 88 143-251 23-114 (213)
139 TIGR01212 radical SAM protein, 50.1 2E+02 0.0043 26.0 14.1 114 140-257 89-220 (302)
140 TIGR01502 B_methylAsp_ase meth 49.9 96 0.0021 29.6 8.4 84 167-255 267-357 (408)
141 PRK00912 ribonuclease P protei 49.9 1.7E+02 0.0037 25.3 11.3 147 75-252 16-173 (237)
142 TIGR01228 hutU urocanate hydra 49.7 37 0.0008 33.1 5.5 107 110-227 142-259 (545)
143 TIGR01283 nifE nitrogenase mol 49.2 2.2E+02 0.0048 27.3 11.0 111 93-221 98-228 (456)
144 COG2873 MET17 O-acetylhomoseri 49.1 2.1E+02 0.0045 27.2 10.1 151 78-269 67-230 (426)
145 PRK05414 urocanate hydratase; 49.1 40 0.00088 32.9 5.7 107 110-227 151-268 (556)
146 cd07938 DRE_TIM_HMGL 3-hydroxy 49.0 2E+02 0.0042 25.7 13.3 25 72-96 17-41 (274)
147 cd07943 DRE_TIM_HOA 4-hydroxy- 48.8 1.4E+02 0.0031 26.2 9.0 13 155-167 31-43 (263)
148 PF10566 Glyco_hydro_97: Glyco 48.8 67 0.0015 28.9 6.8 56 199-254 28-94 (273)
149 TIGR01284 alt_nitrog_alph nitr 48.2 2.3E+02 0.0051 27.3 11.0 105 110-220 109-229 (457)
150 TIGR00381 cdhD CO dehydrogenas 48.1 2E+02 0.0044 27.2 10.0 94 156-259 150-253 (389)
151 cd01973 Nitrogenase_VFe_beta_l 47.8 1.8E+02 0.0039 28.1 10.0 116 94-222 64-194 (454)
152 cd00739 DHPS DHPS subgroup of 47.6 1.8E+02 0.004 25.7 9.4 101 142-254 21-128 (257)
153 cd03174 DRE_TIM_metallolyase D 47.4 1.9E+02 0.0041 25.0 15.3 25 72-96 16-40 (265)
154 COG2256 MGS1 ATPase related to 47.3 1.7E+02 0.0036 28.1 9.3 104 79-200 37-141 (436)
155 COG1167 ARO8 Transcriptional r 47.2 2.7E+02 0.0058 26.8 13.5 154 72-253 104-267 (459)
156 COG1021 EntE Peptide arylation 47.0 1.7E+02 0.0037 28.2 9.3 97 108-212 25-124 (542)
157 COG0820 Predicted Fe-S-cluster 46.9 1.6E+02 0.0034 27.5 9.0 97 165-264 215-343 (349)
158 PRK14476 nitrogenase molybdenu 46.8 1.1E+02 0.0023 29.6 8.3 109 96-220 72-199 (455)
159 cd00405 PRAI Phosphoribosylant 46.7 94 0.002 26.1 7.2 41 162-205 73-113 (203)
160 PLN02363 phosphoribosylanthran 46.7 61 0.0013 28.8 6.2 65 156-226 64-130 (256)
161 PF13407 Peripla_BP_4: Peripla 46.5 73 0.0016 27.1 6.7 74 144-222 13-86 (257)
162 PRK00730 rnpA ribonuclease P; 46.1 85 0.0019 25.2 6.3 61 126-189 47-110 (138)
163 PF01619 Pro_dh: Proline dehyd 45.9 25 0.00055 32.0 3.8 164 75-256 92-283 (313)
164 cd07937 DRE_TIM_PC_TC_5S Pyruv 45.9 2.2E+02 0.0047 25.4 16.5 25 72-96 18-42 (275)
165 TIGR00190 thiC thiamine biosyn 45.6 99 0.0022 29.4 7.5 103 140-254 135-264 (423)
166 PRK13210 putative L-xylulose 5 45.6 2.1E+02 0.0045 25.0 10.3 19 203-221 94-112 (284)
167 TIGR03821 AblA_like_1 lysine-2 45.3 2.4E+02 0.0053 25.8 10.3 79 179-258 161-245 (321)
168 PLN02746 hydroxymethylglutaryl 44.9 2.6E+02 0.0057 26.0 14.9 27 72-98 65-91 (347)
169 PF04748 Polysacc_deac_2: Dive 44.8 1.8E+02 0.0038 25.0 8.6 124 72-217 71-203 (213)
170 PRK04452 acetyl-CoA decarbonyl 44.8 1.8E+02 0.0038 26.9 9.0 95 153-255 83-184 (319)
171 PLN02746 hydroxymethylglutaryl 44.4 1.4E+02 0.0031 27.8 8.5 104 142-251 65-180 (347)
172 PRK09061 D-glutamate deacylase 44.3 3.2E+02 0.0068 26.8 12.9 115 75-200 169-285 (509)
173 PRK01222 N-(5'-phosphoribosyl) 44.1 51 0.0011 28.2 5.2 66 155-227 19-86 (210)
174 PF00762 Ferrochelatase: Ferro 44.1 1.2E+02 0.0025 27.9 7.8 54 143-197 205-260 (316)
175 PRK12323 DNA polymerase III su 44.0 1.4E+02 0.003 30.6 8.7 71 142-213 104-176 (700)
176 PF08734 GYD: GYD domain; Int 43.9 1.2E+02 0.0025 22.3 6.4 65 145-209 19-90 (91)
177 PRK07114 keto-hydroxyglutarate 43.9 1E+02 0.0022 26.8 7.0 88 143-251 25-117 (222)
178 PRK14467 ribosomal RNA large s 43.7 2.1E+02 0.0045 26.7 9.4 102 162-263 208-341 (348)
179 PRK08776 cystathionine gamma-s 43.3 2.9E+02 0.0063 26.1 11.1 72 183-258 116-187 (405)
180 PF02679 ComA: (2R)-phospho-3- 43.2 69 0.0015 28.3 5.9 101 148-251 24-131 (244)
181 TIGR01860 VNFD nitrogenase van 43.1 2.7E+02 0.0058 26.9 10.5 114 93-221 103-232 (461)
182 PRK13505 formate--tetrahydrofo 43.1 53 0.0011 32.5 5.6 55 203-258 359-413 (557)
183 TIGR03849 arch_ComA phosphosul 43.1 1.6E+02 0.0035 25.9 8.1 98 149-250 12-117 (237)
184 PRK15108 biotin synthase; Prov 43.0 1.7E+02 0.0036 27.1 8.8 65 142-210 76-144 (345)
185 COG2109 BtuR ATP:corrinoid ade 42.9 1.3E+02 0.0028 25.6 7.2 97 75-184 43-150 (198)
186 PRK07764 DNA polymerase III su 42.8 4.3E+02 0.0092 27.8 14.3 98 142-249 100-199 (824)
187 PRK14466 ribosomal RNA large s 42.7 2.1E+02 0.0045 26.7 9.2 98 165-264 210-338 (345)
188 TIGR01210 conserved hypothetic 42.6 2.1E+02 0.0045 26.1 9.2 40 180-219 117-171 (313)
189 PRK06294 coproporphyrinogen II 42.6 1.5E+02 0.0033 27.6 8.5 60 140-201 165-242 (370)
190 cd00423 Pterin_binding Pterin 42.4 2.4E+02 0.0052 24.8 10.0 106 142-259 21-133 (258)
191 COG2987 HutU Urocanate hydrata 42.3 55 0.0012 31.6 5.3 107 110-227 151-268 (561)
192 PRK14040 oxaloacetate decarbox 42.3 3.7E+02 0.0081 27.0 16.5 132 72-218 24-170 (593)
193 PRK12268 methionyl-tRNA synthe 41.8 90 0.0019 30.8 7.2 94 91-192 6-118 (556)
194 PRK08446 coproporphyrinogen II 41.8 2.2E+02 0.0047 26.3 9.4 61 140-202 160-231 (350)
195 PF01175 Urocanase: Urocanase; 41.7 81 0.0018 30.9 6.5 104 110-227 141-258 (546)
196 COG1387 HIS2 Histidinol phosph 41.6 2.4E+02 0.0051 24.6 11.2 156 76-251 17-191 (237)
197 PRK13352 thiamine biosynthesis 41.5 1.3E+02 0.0028 28.8 7.6 45 140-194 138-182 (431)
198 PRK15440 L-rhamnonate dehydrat 41.0 64 0.0014 30.5 5.8 70 178-252 246-318 (394)
199 PRK08508 biotin synthase; Prov 41.0 2.3E+02 0.0049 25.3 9.1 76 180-256 102-189 (279)
200 PRK14460 ribosomal RNA large s 40.8 3.1E+02 0.0066 25.6 16.4 159 88-264 152-345 (354)
201 COG1751 Uncharacterized conser 40.7 1.6E+02 0.0034 24.3 7.0 91 166-259 2-96 (186)
202 TIGR01927 menC_gamma/gm+ o-suc 40.7 1.3E+02 0.0029 27.2 7.7 87 163-259 183-270 (307)
203 PF13378 MR_MLE_C: Enolase C-t 40.6 23 0.00049 26.6 2.2 18 237-254 37-54 (111)
204 TIGR00676 fadh2 5,10-methylene 40.5 2.6E+02 0.0057 24.8 15.2 152 74-249 14-186 (272)
205 PRK00507 deoxyribose-phosphate 40.3 1.5E+02 0.0032 25.7 7.5 76 72-161 133-208 (221)
206 KOG1321 Protoheme ferro-lyase 40.3 50 0.0011 30.4 4.6 64 178-244 141-211 (395)
207 cd02930 DCR_FMN 2,4-dienoyl-Co 40.2 3E+02 0.0066 25.4 11.6 93 127-225 203-306 (353)
208 COG2159 Predicted metal-depend 40.1 1.3E+02 0.0029 27.1 7.5 104 155-258 55-169 (293)
209 PRK11864 2-ketoisovalerate fer 39.8 2.6E+02 0.0055 25.6 9.2 117 77-213 160-286 (300)
210 PRK10550 tRNA-dihydrouridine s 39.7 3E+02 0.0064 25.1 13.5 130 73-211 73-215 (312)
211 PRK14468 ribosomal RNA large s 39.5 2.8E+02 0.0061 25.7 9.6 97 165-263 206-333 (343)
212 COG2179 Predicted hydrolase of 39.2 2.2E+02 0.0048 23.7 7.8 84 154-248 22-109 (175)
213 PLN02591 tryptophan synthase 39.0 2E+02 0.0044 25.4 8.3 17 237-253 122-138 (250)
214 cd08562 GDPD_EcUgpQ_like Glyce 38.8 2.4E+02 0.0052 23.8 12.3 18 237-254 190-207 (229)
215 PRK05301 pyrroloquinoline quin 38.6 3.2E+02 0.007 25.3 13.7 128 71-218 45-184 (378)
216 TIGR03217 4OH_2_O_val_ald 4-hy 38.5 3.2E+02 0.007 25.2 17.7 24 72-95 21-44 (333)
217 TIGR03217 4OH_2_O_val_ald 4-hy 38.4 1.9E+02 0.004 26.7 8.3 37 181-218 91-129 (333)
218 cd08583 PI-PLCc_GDPD_SF_unchar 38.3 2.6E+02 0.0056 24.0 11.6 18 237-254 196-213 (237)
219 PF07302 AroM: AroM protein; 38.1 2.7E+02 0.0059 24.2 11.1 162 75-256 13-188 (221)
220 PRK03459 rnpA ribonuclease P; 37.8 1.3E+02 0.0028 23.4 6.2 62 125-189 48-114 (122)
221 COG3033 TnaA Tryptophanase [Am 37.7 80 0.0017 29.8 5.5 53 199-251 168-224 (471)
222 COG2185 Sbm Methylmalonyl-CoA 37.6 2.2E+02 0.0048 23.0 12.5 107 77-210 28-135 (143)
223 PTZ00081 enolase; Provisional 37.5 2.2E+02 0.0047 27.5 8.8 97 142-251 281-381 (439)
224 cd00954 NAL N-Acetylneuraminic 37.4 3E+02 0.0065 24.5 11.3 110 141-252 17-134 (288)
225 PRK14477 bifunctional nitrogen 37.3 2.1E+02 0.0046 30.4 9.4 109 110-221 556-676 (917)
226 COG0159 TrpA Tryptophan syntha 37.1 2.6E+02 0.0057 25.0 8.6 18 237-254 138-155 (265)
227 PRK11194 ribosomal RNA large s 37.1 3.2E+02 0.007 25.7 9.7 96 167-264 221-350 (372)
228 smart00633 Glyco_10 Glycosyl h 37.0 1.9E+02 0.0041 25.2 7.8 109 144-255 102-227 (254)
229 PRK09545 znuA high-affinity zi 36.8 3.3E+02 0.0071 24.7 9.6 54 201-261 237-290 (311)
230 TIGR01285 nifN nitrogenase mol 36.8 1.7E+02 0.0037 28.0 8.0 114 96-221 71-199 (432)
231 PRK10826 2-deoxyglucose-6-phos 36.7 1.2E+02 0.0027 25.5 6.5 36 175-211 93-128 (222)
232 TIGR01496 DHPS dihydropteroate 36.6 3E+02 0.0065 24.3 11.5 108 79-201 86-207 (257)
233 COG1560 HtrB Lauroyl/myristoyl 36.4 3.4E+02 0.0073 24.8 10.0 69 76-164 110-178 (308)
234 COG3653 N-acyl-D-aspartate/D-g 36.4 4.1E+02 0.009 25.8 12.4 109 74-209 181-298 (579)
235 TIGR00398 metG methionyl-tRNA 36.3 1.6E+02 0.0034 28.9 7.9 46 145-192 68-113 (530)
236 TIGR02090 LEU1_arch isopropylm 36.1 3.6E+02 0.0078 25.1 13.4 25 72-96 19-43 (363)
237 cd00408 DHDPS-like Dihydrodipi 36.1 3E+02 0.0066 24.2 13.9 133 71-211 14-172 (281)
238 PRK08195 4-hyroxy-2-oxovalerat 35.8 3.6E+02 0.0077 24.9 9.8 11 155-165 34-44 (337)
239 cd01321 ADGF Adenosine deamina 35.8 3.6E+02 0.0078 24.9 11.1 158 75-251 70-251 (345)
240 COG0145 HyuA N-methylhydantoin 35.5 2.8E+02 0.0061 28.4 9.6 91 70-172 134-242 (674)
241 TIGR00126 deoC deoxyribose-pho 35.4 2.9E+02 0.0063 23.7 15.2 160 72-252 15-181 (211)
242 cd00959 DeoC 2-deoxyribose-5-p 35.1 2.7E+02 0.0059 23.4 15.3 160 72-252 14-180 (203)
243 TIGR00853 pts-lac PTS system, 34.6 69 0.0015 23.7 4.0 27 237-263 66-92 (95)
244 TIGR01861 ANFD nitrogenase iro 34.6 4.6E+02 0.01 25.8 11.3 112 94-222 105-234 (513)
245 KOG1196 Predicted NAD-dependen 34.5 52 0.0011 30.2 3.8 99 76-195 211-310 (343)
246 PF15221 LEP503: Lens epitheli 34.4 27 0.00058 23.3 1.4 22 35-56 14-35 (61)
247 COG2040 MHT1 Homocysteine/sele 34.3 3.6E+02 0.0078 24.5 11.7 173 74-254 42-241 (300)
248 COG2022 ThiG Uncharacterized e 34.2 1.3E+02 0.0029 26.5 6.0 105 141-252 79-188 (262)
249 PRK14456 ribosomal RNA large s 34.2 2.6E+02 0.0056 26.3 8.5 96 165-262 237-364 (368)
250 PRK05660 HemN family oxidoredu 34.1 2.2E+02 0.0047 26.6 8.1 89 73-201 141-242 (378)
251 PRK01313 rnpA ribonuclease P; 34.0 1.6E+02 0.0034 23.3 6.1 60 126-188 48-113 (129)
252 TIGR01290 nifB nitrogenase cof 33.8 4.1E+02 0.0088 25.6 10.0 68 141-210 59-131 (442)
253 cd07939 DRE_TIM_NifV Streptomy 33.3 3.3E+02 0.0072 23.8 13.7 86 174-264 136-225 (259)
254 PRK13111 trpA tryptophan synth 33.0 3.4E+02 0.0075 24.0 8.8 15 237-251 133-147 (258)
255 PRK08208 coproporphyrinogen II 32.9 3.2E+02 0.0069 26.1 9.2 88 73-201 175-274 (430)
256 PRK06256 biotin synthase; Vali 32.9 3.8E+02 0.0082 24.3 10.7 126 71-216 90-229 (336)
257 TIGR01917 gly_red_sel_B glycin 32.8 2E+02 0.0044 27.6 7.5 74 180-255 289-373 (431)
258 PRK09061 D-glutamate deacylase 32.7 4.2E+02 0.0091 25.9 10.1 23 205-227 264-286 (509)
259 PRK10658 putative alpha-glucos 32.6 2.2E+02 0.0049 29.0 8.4 89 161-252 234-344 (665)
260 TIGR01430 aden_deam adenosine 32.5 3.8E+02 0.0081 24.2 12.2 112 142-254 65-193 (324)
261 PRK04390 rnpA ribonuclease P; 32.4 2E+02 0.0044 22.2 6.4 63 125-189 44-110 (120)
262 PRK08072 nicotinate-nucleotide 32.2 1.8E+02 0.004 26.1 7.0 32 179-210 174-206 (277)
263 PF13380 CoA_binding_2: CoA bi 32.2 1.4E+02 0.0031 22.7 5.6 29 216-251 79-107 (116)
264 KOG0053 Cystathionine beta-lya 32.2 4.6E+02 0.01 25.1 9.9 59 201-260 148-206 (409)
265 cd01976 Nitrogenase_MoFe_alpha 32.0 4.5E+02 0.0098 25.0 11.7 103 110-221 83-203 (421)
266 KOG2965 Arginase [Amino acid t 31.8 2.3E+02 0.005 25.5 7.2 45 151-198 194-238 (318)
267 cd01977 Nitrogenase_VFe_alpha 31.7 4.5E+02 0.0097 24.8 12.2 113 93-220 64-192 (415)
268 COG2055 Malate/L-lactate dehyd 31.7 3.6E+02 0.0079 25.2 8.9 96 140-252 4-114 (349)
269 cd08556 GDPD Glycerophosphodie 31.6 2.7E+02 0.0059 22.3 12.6 156 74-254 12-168 (189)
270 PRK10551 phage resistance prot 31.6 1.8E+02 0.0039 28.5 7.4 114 128-252 349-473 (518)
271 PRK03031 rnpA ribonuclease P; 31.5 1.9E+02 0.0041 22.4 6.1 62 126-189 48-114 (122)
272 PF00290 Trp_syntA: Tryptophan 31.5 1.1E+02 0.0024 27.3 5.3 16 237-252 131-146 (259)
273 PF00072 Response_reg: Respons 31.3 2E+02 0.0043 20.6 6.2 58 152-211 33-92 (112)
274 COG2062 SixA Phosphohistidine 31.3 2.7E+02 0.0059 23.0 7.3 84 110-209 34-118 (163)
275 PF12816 Vps8: Golgi CORVET co 31.2 39 0.00084 28.7 2.3 64 179-247 4-67 (196)
276 cd07945 DRE_TIM_CMS Leptospira 31.1 2.6E+02 0.0056 25.1 7.8 42 75-118 203-244 (280)
277 TIGR00238 KamA family protein. 30.9 4.2E+02 0.0092 24.3 13.1 132 74-219 144-284 (331)
278 PRK07360 FO synthase subunit 2 30.9 4.4E+02 0.0096 24.5 11.0 24 72-95 91-114 (371)
279 PRK13803 bifunctional phosphor 30.8 2.6E+02 0.0056 28.2 8.4 67 156-227 20-88 (610)
280 KOG0996 Structural maintenance 30.8 35 0.00076 36.6 2.3 89 176-273 599-696 (1293)
281 PRK11858 aksA trans-homoaconit 30.7 4.5E+02 0.0098 24.6 14.4 24 72-95 23-46 (378)
282 PF13580 SIS_2: SIS domain; PD 30.7 1.1E+02 0.0025 23.9 4.9 116 73-198 20-137 (138)
283 TIGR02080 O_succ_thio_ly O-suc 30.6 4.5E+02 0.0097 24.5 10.7 39 218-256 138-176 (382)
284 PRK05628 coproporphyrinogen II 30.6 3E+02 0.0065 25.5 8.5 80 80-169 110-198 (375)
285 PRK14469 ribosomal RNA large s 30.5 4.3E+02 0.0094 24.3 10.0 97 165-263 211-337 (343)
286 cd03313 enolase Enolase: Enola 30.5 3.7E+02 0.0081 25.5 9.1 97 142-251 261-361 (408)
287 COG1121 ZnuC ABC-type Mn/Zn tr 30.5 1.8E+02 0.004 25.8 6.5 46 161-208 156-205 (254)
288 PRK00499 rnpA ribonuclease P; 30.4 2E+02 0.0044 21.9 6.1 61 126-189 39-104 (114)
289 cd00959 DeoC 2-deoxyribose-5-p 30.4 2.5E+02 0.0054 23.7 7.2 75 73-161 129-203 (203)
290 COG1533 SplB DNA repair photol 30.2 1.4E+02 0.003 27.2 5.9 126 75-216 66-212 (297)
291 cd08568 GDPD_TmGDE_like Glycer 30.1 1.6E+02 0.0035 25.0 6.2 20 75-94 14-33 (226)
292 PF01297 TroA: Periplasmic sol 30.0 3.6E+02 0.0079 23.3 8.7 82 162-258 150-234 (256)
293 PF06415 iPGM_N: BPG-independe 30.0 2.6E+02 0.0056 24.4 7.2 76 176-251 13-99 (223)
294 KOG3131 Uncharacterized conser 29.9 4E+02 0.0087 23.7 9.2 113 126-258 25-151 (281)
295 PRK13130 H/ACA RNA-protein com 29.8 40 0.00086 22.7 1.7 17 262-278 24-40 (56)
296 cd02067 B12-binding B12 bindin 29.8 2E+02 0.0043 21.7 6.0 58 149-215 17-77 (119)
297 PRK13347 coproporphyrinogen II 29.6 2.1E+02 0.0045 27.5 7.4 88 73-201 186-290 (453)
298 PTZ00399 cysteinyl-tRNA-synthe 29.6 5.8E+02 0.012 26.0 10.7 104 63-193 70-175 (651)
299 cd00466 DHQase_II Dehydroquina 29.5 1.7E+02 0.0036 23.6 5.5 81 140-231 22-104 (140)
300 TIGR03551 F420_cofH 7,8-dideme 29.3 4E+02 0.0086 24.4 8.9 142 73-255 71-230 (343)
301 PRK04165 acetyl-CoA decarbonyl 29.3 5.4E+02 0.012 25.0 10.7 103 141-254 101-209 (450)
302 TIGR02666 moaA molybdenum cofa 29.3 3.1E+02 0.0068 24.9 8.2 76 181-258 103-196 (334)
303 PRK01222 N-(5'-phosphoribosyl) 29.3 1.7E+02 0.0037 25.0 6.1 33 162-200 77-112 (210)
304 PTZ00413 lipoate synthase; Pro 29.2 5.1E+02 0.011 24.7 12.6 167 70-257 175-373 (398)
305 KOG1579 Homocysteine S-methylt 29.2 4.6E+02 0.0099 24.1 11.5 191 63-260 42-262 (317)
306 PF00701 DHDPS: Dihydrodipicol 29.2 4.1E+02 0.0088 23.5 10.3 106 141-253 18-134 (289)
307 COG1831 Predicted metal-depend 29.0 4.3E+02 0.0094 23.8 9.9 65 178-247 108-185 (285)
308 COG4943 Predicted signal trans 29.0 2.7E+02 0.0059 27.3 7.7 138 110-265 341-505 (524)
309 PRK09427 bifunctional indole-3 29.0 1.4E+02 0.0029 29.0 5.9 64 155-227 273-338 (454)
310 TIGR02109 PQQ_syn_pqqE coenzym 28.9 4.5E+02 0.0098 24.0 12.9 128 71-218 36-175 (358)
311 CHL00200 trpA tryptophan synth 28.9 4E+02 0.0086 23.7 8.5 90 148-247 28-120 (263)
312 PRK05926 hypothetical protein; 28.8 3.5E+02 0.0075 25.4 8.5 50 180-230 169-233 (370)
313 cd00950 DHDPS Dihydrodipicolin 28.7 4.1E+02 0.0089 23.4 10.6 108 140-254 16-134 (284)
314 PRK08247 cystathionine gamma-s 28.6 4E+02 0.0088 24.5 8.9 20 203-222 153-172 (366)
315 PRK12267 methionyl-tRNA synthe 28.5 2.8E+02 0.0061 28.0 8.3 48 145-194 73-120 (648)
316 KOG0369 Pyruvate carboxylase [ 28.5 3.8E+02 0.0081 27.7 8.7 152 75-258 43-196 (1176)
317 PRK01732 rnpA ribonuclease P; 28.5 2.5E+02 0.0053 21.5 6.2 61 126-189 46-111 (114)
318 TIGR01329 cysta_beta_ly_E cyst 28.4 4.4E+02 0.0096 24.5 9.2 14 147-160 98-111 (378)
319 COG3215 PilZ Tfp pilus assembl 28.3 1.4E+02 0.003 22.8 4.5 77 73-161 18-111 (117)
320 cd06300 PBP1_ABC_sugar_binding 28.2 3.7E+02 0.0081 22.8 9.6 52 145-200 15-69 (272)
321 PRK11840 bifunctional sulfur c 28.1 4.9E+02 0.011 24.1 10.6 71 140-211 145-217 (326)
322 PRK07535 methyltetrahydrofolat 27.9 4.3E+02 0.0093 23.4 9.1 107 79-201 80-200 (261)
323 cd01948 EAL EAL domain. This d 27.9 2.9E+02 0.0063 23.0 7.4 101 144-253 97-209 (240)
324 PF04135 Nop10p: Nucleolar RNA 27.9 32 0.00069 22.9 1.0 17 262-278 24-40 (53)
325 TIGR02814 pfaD_fam PfaD family 27.8 3E+02 0.0065 26.6 7.9 72 181-254 34-108 (444)
326 TIGR00973 leuA_bact 2-isopropy 27.6 5.9E+02 0.013 24.9 14.2 118 142-264 110-236 (494)
327 TIGR00262 trpA tryptophan synt 27.6 4.3E+02 0.0093 23.3 9.5 73 177-254 72-149 (256)
328 COG0826 Collagenase and relate 27.6 2.3E+02 0.0051 26.4 7.0 15 237-251 102-118 (347)
329 PF09989 DUF2229: CoA enzyme a 27.5 4E+02 0.0087 22.9 12.0 34 218-252 185-218 (221)
330 PRK05692 hydroxymethylglutaryl 27.4 4.6E+02 0.0099 23.5 12.7 24 72-95 23-46 (287)
331 PRK00396 rnpA ribonuclease P; 27.3 2.5E+02 0.0054 22.2 6.2 61 126-189 47-112 (130)
332 PRK00133 metG methionyl-tRNA s 27.3 2.6E+02 0.0057 28.4 7.9 46 145-192 71-116 (673)
333 COG2179 Predicted hydrolase of 27.2 3.7E+02 0.0081 22.5 8.0 70 75-170 49-118 (175)
334 PLN02449 ferrochelatase 27.2 4.5E+02 0.0096 25.8 9.0 74 144-217 299-386 (485)
335 COG3693 XynA Beta-1,4-xylanase 27.2 5E+02 0.011 24.1 8.7 86 142-230 168-264 (345)
336 TIGR00683 nanA N-acetylneurami 27.1 4.6E+02 0.0099 23.5 13.9 68 141-210 109-176 (290)
337 TIGR03699 mena_SCO4550 menaqui 27.1 4.8E+02 0.01 23.7 11.3 128 72-216 72-223 (340)
338 PF07894 DUF1669: Protein of u 27.1 4.1E+02 0.0089 24.1 8.2 65 176-249 135-200 (284)
339 cd01017 AdcA Metal binding pro 27.1 4.4E+02 0.0096 23.3 8.8 52 200-258 204-255 (282)
340 PF01118 Semialdhyde_dh: Semia 27.1 68 0.0015 24.5 2.9 28 73-100 75-102 (121)
341 TIGR01163 rpe ribulose-phospha 27.0 3.6E+02 0.0079 22.3 9.9 22 144-166 10-31 (210)
342 cd06598 GH31_transferase_CtsZ 26.9 1.5E+02 0.0033 26.9 5.7 53 201-253 22-90 (317)
343 TIGR00538 hemN oxygen-independ 26.8 2.6E+02 0.0055 26.9 7.4 61 140-202 213-290 (455)
344 cd00812 LeuRS_core catalytic c 26.6 2E+02 0.0042 26.2 6.3 47 145-192 69-116 (314)
345 PRK13015 3-dehydroquinate dehy 26.6 2.5E+02 0.0054 22.8 6.1 81 140-231 24-106 (146)
346 PF00809 Pterin_bind: Pterin b 26.6 3.9E+02 0.0083 22.7 7.8 88 158-255 31-125 (210)
347 TIGR01282 nifD nitrogenase mol 26.5 4.3E+02 0.0094 25.5 8.9 103 110-221 116-238 (466)
348 PF14871 GHL6: Hypothetical gl 26.5 51 0.0011 26.1 2.2 20 237-256 48-67 (132)
349 TIGR00423 radical SAM domain p 26.4 4.8E+02 0.01 23.5 8.8 67 180-247 107-188 (309)
350 cd00338 Ser_Recombinase Serine 26.3 1.2E+02 0.0025 23.3 4.2 41 150-190 53-95 (137)
351 smart00481 POLIIIAc DNA polyme 26.2 75 0.0016 21.4 2.7 44 204-251 16-59 (67)
352 cd00952 CHBPH_aldolase Trans-o 26.1 4.3E+02 0.0094 23.9 8.5 105 148-252 28-141 (309)
353 PF07994 NAD_binding_5: Myo-in 26.1 5E+02 0.011 23.6 9.4 95 144-251 131-230 (295)
354 PRK05283 deoxyribose-phosphate 26.1 3.8E+02 0.0083 23.9 7.8 143 72-230 23-174 (257)
355 cd03326 MR_like_1 Mandelate ra 26.0 5.5E+02 0.012 24.1 13.3 152 74-248 161-313 (385)
356 PRK14465 ribosomal RNA large s 26.0 5.4E+02 0.012 23.9 10.6 91 165-257 215-329 (342)
357 COG2260 Predicted Zn-ribbon RN 26.0 47 0.001 22.5 1.5 14 264-277 26-39 (59)
358 cd03770 SR_TndX_transposase Se 25.8 1.1E+02 0.0024 24.0 4.1 19 75-93 22-40 (140)
359 cd06593 GH31_xylosidase_YicI Y 25.6 2.1E+02 0.0045 25.8 6.3 53 200-252 21-85 (308)
360 PRK08123 histidinol-phosphatas 25.4 2.6E+02 0.0057 24.7 6.8 48 203-251 197-247 (270)
361 PF03599 CdhD: CO dehydrogenas 25.3 3.8E+02 0.0082 25.5 7.9 86 162-256 69-154 (386)
362 PF08013 Tagatose_6_P_K: Tagat 25.2 81 0.0018 30.1 3.5 52 44-97 78-131 (424)
363 PF05913 DUF871: Bacterial pro 25.0 19 0.00042 33.6 -0.6 163 50-254 1-177 (357)
364 cd06597 GH31_transferase_CtsY 25.0 2E+02 0.0044 26.5 6.2 52 201-252 22-104 (340)
365 PRK08419 lipid A biosynthesis 25.0 4.9E+02 0.011 23.1 9.7 18 237-254 214-231 (298)
366 COG2896 MoaA Molybdenum cofact 24.9 5.5E+02 0.012 23.7 11.5 125 71-218 42-182 (322)
367 PRK14462 ribosomal RNA large s 24.9 5.8E+02 0.012 23.9 16.5 96 167-264 225-351 (356)
368 COG3589 Uncharacterized conser 24.8 3.3E+02 0.0072 25.4 7.2 156 73-258 14-182 (360)
369 TIGR03470 HpnH hopanoid biosyn 24.6 5.3E+02 0.012 23.4 13.9 51 176-226 148-201 (318)
370 TIGR00188 rnpA ribonuclease P 24.5 3E+02 0.0065 20.6 6.0 58 126-186 42-103 (105)
371 PF13289 SIR2_2: SIR2-like dom 24.4 2.4E+02 0.0051 21.6 5.7 68 177-250 74-143 (143)
372 cd03320 OSBS o-Succinylbenzoat 24.3 4.8E+02 0.01 22.8 11.4 87 163-258 153-239 (263)
373 PRK10508 hypothetical protein; 24.2 93 0.002 28.7 3.7 43 142-188 286-328 (333)
374 PRK07360 FO synthase subunit 2 24.1 4.6E+02 0.01 24.4 8.4 40 180-219 163-217 (371)
375 PRK14477 bifunctional nitrogen 24.0 6.5E+02 0.014 26.8 10.3 112 93-220 89-214 (917)
376 COG4152 ABC-type uncharacteriz 23.9 5.3E+02 0.011 23.3 8.0 69 141-211 101-199 (300)
377 cd06595 GH31_xylosidase_XylS-l 23.9 2.2E+02 0.0047 25.6 6.0 54 200-253 22-94 (292)
378 PRK13010 purU formyltetrahydro 23.8 5.4E+02 0.012 23.2 15.1 144 75-253 21-176 (289)
379 PRK04820 rnpA ribonuclease P; 23.8 3.4E+02 0.0074 21.9 6.5 62 126-189 49-114 (145)
380 PF01487 DHquinase_I: Type I 3 23.7 4.5E+02 0.0098 22.3 9.9 112 72-200 72-185 (224)
381 TIGR02637 RhaS rhamnose ABC tr 23.7 4.9E+02 0.011 22.7 10.2 74 144-221 13-86 (302)
382 COG3185 4-hydroxyphenylpyruvat 23.7 65 0.0014 30.0 2.5 72 7-98 206-277 (363)
383 PRK00507 deoxyribose-phosphate 23.7 4.8E+02 0.01 22.5 15.1 136 72-227 19-160 (221)
384 cd03314 MAL Methylaspartate am 23.6 2.1E+02 0.0046 26.8 6.0 85 165-254 229-320 (369)
385 PRK05718 keto-hydroxyglutarate 23.6 4.7E+02 0.01 22.4 9.2 88 142-250 24-112 (212)
386 PF05378 Hydant_A_N: Hydantoin 23.6 1.6E+02 0.0035 24.4 4.7 45 201-246 132-176 (176)
387 COG2102 Predicted ATPases of P 23.5 4E+02 0.0088 23.2 7.2 74 176-260 75-149 (223)
388 KOG0922 DEAH-box RNA helicase 23.5 74 0.0016 32.1 3.0 40 152-193 412-451 (674)
389 COG3113 Predicted NTP binding 23.4 1.2E+02 0.0027 22.8 3.5 62 147-211 28-89 (99)
390 cd00885 cinA Competence-damage 23.4 3.2E+02 0.007 22.4 6.5 42 80-133 24-65 (170)
391 KOG0059 Lipid exporter ABCA1 a 23.3 3E+02 0.0066 29.0 7.7 70 140-211 668-767 (885)
392 PRK08508 biotin synthase; Prov 23.2 5.3E+02 0.012 22.9 9.4 22 72-93 40-61 (279)
393 TIGR00238 KamA family protein. 23.2 5.8E+02 0.013 23.4 10.2 25 237-261 241-265 (331)
394 PRK04820 rnpA ribonuclease P; 23.0 3.6E+02 0.0078 21.7 6.5 32 127-160 86-117 (145)
395 cd06591 GH31_xylosidase_XylS X 23.0 2E+02 0.0044 26.1 5.7 55 201-255 22-89 (319)
396 TIGR00930 2a30 K-Cl cotranspor 22.8 5.7E+02 0.012 27.4 9.6 90 88-187 759-848 (953)
397 PRK12435 ferrochelatase; Provi 22.8 5.2E+02 0.011 23.5 8.3 76 143-218 195-282 (311)
398 PLN02428 lipoic acid synthase 22.7 6.3E+02 0.014 23.6 14.1 165 72-257 130-325 (349)
399 COG0052 RpsB Ribosomal protein 22.7 5.5E+02 0.012 22.8 9.3 132 87-253 36-186 (252)
400 cd08561 GDPD_cytoplasmic_ScUgp 22.7 3E+02 0.0066 23.7 6.6 18 237-254 203-220 (249)
401 PRK10060 RNase II stability mo 22.6 5.3E+02 0.012 26.0 9.1 114 128-252 492-617 (663)
402 cd01452 VWA_26S_proteasome_sub 22.6 4.7E+02 0.01 22.0 8.2 67 146-213 86-162 (187)
403 cd06604 GH31_glucosidase_II_Ma 22.5 1.9E+02 0.0042 26.5 5.5 52 201-252 22-83 (339)
404 PF00809 Pterin_bind: Pterin b 22.5 3.5E+02 0.0076 22.9 6.8 106 80-199 84-205 (210)
405 smart00857 Resolvase Resolvase 22.3 2.2E+02 0.0047 22.1 5.2 19 75-93 19-37 (148)
406 TIGR03471 HpnJ hopanoid biosyn 22.3 3.6E+02 0.0077 25.9 7.5 52 200-251 320-371 (472)
407 cd08573 GDPD_GDE1 Glycerophosp 22.2 2.3E+02 0.005 24.8 5.8 18 237-254 219-236 (258)
408 COG1104 NifS Cysteine sulfinat 22.2 1.8E+02 0.004 27.5 5.2 78 177-260 102-185 (386)
409 PLN02231 alanine transaminase 22.2 7.6E+02 0.017 24.3 10.9 82 178-259 257-353 (534)
410 COG0796 MurI Glutamate racemas 22.2 5.8E+02 0.013 22.9 10.7 87 110-199 18-117 (269)
411 COG0135 TrpF Phosphoribosylant 22.1 1.2E+02 0.0025 26.2 3.6 33 162-200 75-110 (208)
412 TIGR03278 methan_mark_10 putat 22.1 6.9E+02 0.015 23.8 10.1 27 230-256 180-206 (404)
413 TIGR03821 AblA_like_1 lysine-2 22.1 6.1E+02 0.013 23.1 13.4 137 73-221 126-269 (321)
414 TIGR00737 nifR3_yhdG putative 22.1 5.9E+02 0.013 23.0 12.7 128 73-211 73-213 (319)
415 PRK11059 regulatory protein Cs 22.1 2.6E+02 0.0056 28.1 6.7 70 176-253 532-610 (640)
416 PRK07811 cystathionine gamma-s 22.0 6.5E+02 0.014 23.4 9.8 41 218-258 148-188 (388)
417 PLN02591 tryptophan synthase 22.0 5.5E+02 0.012 22.6 14.0 128 72-211 13-153 (250)
418 TIGR01286 nifK nitrogenase mol 21.9 6.1E+02 0.013 24.9 9.1 116 93-221 119-252 (515)
419 cd07947 DRE_TIM_Re_CS Clostrid 21.8 5.8E+02 0.013 22.8 11.7 27 73-100 19-50 (279)
420 PRK00454 engB GTP-binding prot 21.8 4.3E+02 0.0092 21.2 8.6 16 174-189 180-195 (196)
421 cd00419 Ferrochelatase_C Ferro 21.7 4E+02 0.0087 20.9 9.9 65 126-190 18-90 (135)
422 PF09370 TIM-br_sig_trns: TIM- 21.6 1.4E+02 0.003 26.8 4.0 91 140-252 61-156 (268)
423 PF03796 DnaB_C: DnaB-like hel 21.6 4.2E+02 0.0092 22.9 7.3 23 237-259 161-183 (259)
424 PF00155 Aminotran_1_2: Aminot 21.5 5.4E+02 0.012 23.1 8.3 103 151-259 81-194 (363)
425 TIGR01918 various_sel_PB selen 21.5 2.9E+02 0.0063 26.5 6.4 73 180-254 289-372 (431)
426 TIGR00035 asp_race aspartate r 21.5 4E+02 0.0086 22.8 7.0 62 142-204 14-88 (229)
427 TIGR02931 anfK_nitrog Fe-only 21.5 7.4E+02 0.016 23.9 9.6 115 94-221 70-200 (461)
428 cd01971 Nitrogenase_VnfN_like 21.4 7.1E+02 0.015 23.6 10.7 106 110-222 71-192 (427)
429 cd01297 D-aminoacylase D-amino 21.3 6.8E+02 0.015 23.4 11.0 122 74-210 166-297 (415)
430 COG1880 CdhB CO dehydrogenase/ 21.3 4.8E+02 0.01 21.6 7.2 107 74-188 49-169 (170)
431 COG1448 TyrB Aspartate/tyrosin 21.2 3.8E+02 0.0082 25.4 7.0 85 55-158 181-282 (396)
432 PF09334 tRNA-synt_1g: tRNA sy 21.2 2E+02 0.0042 27.2 5.3 104 91-198 2-119 (391)
433 TIGR01459 HAD-SF-IIA-hyp4 HAD- 21.2 1.9E+02 0.0042 24.8 5.0 31 162-192 7-42 (242)
434 KOG0256 1-aminocyclopropane-1- 21.2 5.7E+02 0.012 24.7 8.1 62 163-224 193-267 (471)
435 cd06602 GH31_MGAM_SI_GAA This 21.2 2.4E+02 0.0052 26.0 5.8 53 201-253 22-86 (339)
436 cd08605 GDPD_GDE5_like_1_plant 21.0 2E+02 0.0043 25.5 5.1 18 237-254 241-258 (282)
437 PRK14470 ribosomal RNA large s 21.0 6.6E+02 0.014 23.2 9.3 95 166-262 208-333 (336)
438 PRK05395 3-dehydroquinate dehy 21.0 2.6E+02 0.0056 22.7 5.2 82 140-232 24-107 (146)
439 cd08620 PI-PLCXDc_like_1 Catal 20.8 4.5E+02 0.0099 23.6 7.3 104 81-196 36-162 (281)
440 PRK13561 putative diguanylate 20.8 1.8E+02 0.0039 29.1 5.3 72 177-253 534-611 (651)
441 cd01292 metallo-dependent_hydr 20.8 5E+02 0.011 21.6 15.8 160 74-251 34-201 (275)
442 PF14606 Lipase_GDSL_3: GDSL-l 20.8 4E+02 0.0086 22.3 6.5 77 99-190 43-135 (178)
443 PF06309 Torsin: Torsin; Inte 20.8 4.3E+02 0.0093 20.9 7.7 82 97-187 27-113 (127)
444 cd07944 DRE_TIM_HOA_like 4-hyd 20.7 5.9E+02 0.013 22.5 16.5 25 72-96 17-41 (266)
445 PF10923 DUF2791: P-loop Domai 20.7 3E+02 0.0064 26.4 6.4 69 45-136 16-84 (416)
446 COG3454 Metal-dependent hydrol 20.6 1.1E+02 0.0023 28.5 3.2 15 237-251 214-228 (377)
447 PRK06582 coproporphyrinogen II 20.6 6.7E+02 0.015 23.5 8.8 60 140-201 172-249 (390)
448 PF04800 ETC_C1_NDUFA4: ETC co 20.6 94 0.002 23.5 2.4 34 237-270 60-93 (101)
449 COG1751 Uncharacterized conser 20.5 3.9E+02 0.0084 22.1 6.1 76 71-161 10-85 (186)
450 PF02638 DUF187: Glycosyl hydr 20.5 3E+02 0.0065 25.1 6.2 19 237-255 74-92 (311)
451 cd06594 GH31_glucosidase_YihQ 20.4 2.6E+02 0.0056 25.5 5.8 52 201-252 21-90 (317)
452 PRK07094 biotin synthase; Prov 20.4 6.3E+02 0.014 22.7 13.4 123 72-217 70-209 (323)
453 TIGR00640 acid_CoA_mut_C methy 20.4 4.3E+02 0.0093 20.7 12.5 108 75-210 16-125 (132)
454 cd00950 DHDPS Dihydrodipicolin 20.4 6E+02 0.013 22.4 13.0 66 142-210 109-174 (284)
455 cd04875 ACT_F4HF-DF N-terminal 20.4 2.9E+02 0.0063 18.7 6.2 63 75-161 11-73 (74)
456 PLN02540 methylenetetrahydrofo 20.3 8.8E+02 0.019 24.3 17.1 158 74-251 14-202 (565)
457 COG0289 DapB Dihydrodipicolina 20.3 2.8E+02 0.006 24.9 5.7 51 174-227 77-127 (266)
458 COG0800 Eda 2-keto-3-deoxy-6-p 20.2 4.5E+02 0.0097 22.7 6.8 62 177-251 49-111 (211)
459 PF13602 ADH_zinc_N_2: Zinc-bi 20.2 1.4E+02 0.003 22.4 3.5 41 176-216 80-120 (127)
460 PF05049 IIGP: Interferon-indu 20.1 2.7E+02 0.0059 26.3 5.9 61 109-173 129-201 (376)
461 cd04731 HisF The cyclase subun 20.1 5.6E+02 0.012 21.9 15.5 54 155-211 158-214 (243)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.5e-51 Score=372.92 Aligned_cols=210 Identities=38% Similarity=0.574 Sum_probs=193.0
Q ss_pred cceeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHH
Q 023606 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (280)
Q Consensus 36 m~~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~ 115 (280)
|++|+||+||++||+||||||.+|+. ..+.+++++.++|++|+++||||||||+.||.|.+ |+++|+
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-------~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~s------E~ilG~ 67 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-------TDDEEEAEAIEILDAALDAGINFFDTADVYGDGRS------EEILGE 67 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-------CCchhhhHHHHHHHHHHHcCCCEEECccccCCCch------HHHHHH
Confidence 78999999999999999999999874 23355678889999999999999999999999988 999999
Q ss_pred HHHhcccCCCCCcEEEEecCCCCC--------CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-CCchhHHHHHHHH
Q 023606 116 FIKERKQRDPEVEVTVATKFAALP--------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDA 186 (280)
Q Consensus 116 aL~~~~~~~~R~~~~I~tK~~~~~--------~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~L~~l 186 (280)
||++++. |++++|+||++... .+.++++|+++++.||+|||+||||+|++||||. .+.++++.+|.+|
T Consensus 68 ~l~~~~~---Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l 144 (316)
T COG0667 68 ALKERGR---RDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDEL 144 (316)
T ss_pred HHhccCC---CCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHH
Confidence 9999873 79999999998743 3569999999999999999999999999999998 7789999999999
Q ss_pred HHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCCCCCC
Q 023606 187 VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPRKRNW 266 (280)
Q Consensus 187 k~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~~~~~ 266 (280)
+++|+|++||+|+++.+++.++.+.+ .+++++|.+||+++++.+. +++++|+++||++++||||++|+|++++..
T Consensus 145 ~~~G~ir~iG~S~~~~~~i~~a~~~~----~~~~~~Q~~ynl~~R~~e~-~l~~~~~~~gi~~~~~spla~G~Ltgk~~~ 219 (316)
T COG0667 145 VREGKIRYIGVSNYSAEQIAEALAVA----APIDSLQPEYNLLERDAEK-ELLPLCREEGIGLLAYSPLASGLLTGKYLP 219 (316)
T ss_pred HHcCCeeEEEecCCCHHHHHHHHHhc----CCceeecccCccccccchh-HHHHHHHHcCCeEEEecCccccccCCCcCC
Confidence 99999999999999999999998874 4799999999999986665 499999999999999999999999999987
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.2e-50 Score=363.29 Aligned_cols=220 Identities=38% Similarity=0.561 Sum_probs=199.0
Q ss_pred cccccccceeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchh
Q 023606 30 ATVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINS 109 (280)
Q Consensus 30 ~~~~~~m~~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~s 109 (280)
......|+++++|++|++||++|||||.+.. | ... .++++++++|++|+++|+||||||++||+|.+
T Consensus 6 ~~~~~~~~~~~lg~~gl~Vs~lglG~m~~~~---~---~~~-~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~------ 72 (336)
T KOG1575|consen 6 PSTELGMLRRKLGNSGLKVSPLGLGCMGWTT---F---GGQ-IDKEEAFELLDHAYEAGINFFDTAEVYGNGQS------ 72 (336)
T ss_pred ccchhcceeeeccCCCceecceeecceeeec---c---ccC-CCHHHHHHHHHHHHHcCCCEEehhhhcCCccc------
Confidence 3444579999999999999999999983222 1 123 68899999999999999999999999999988
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCC-----CCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-CCchhHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGL 183 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~-----~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~L 183 (280)
|+++|++|++++. +|++++|+||++.. +...+...+...++.|+++|+++|||+||+||+|+ .+.+++|++|
T Consensus 73 E~llg~~i~~~~~--~R~~vviaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL 150 (336)
T KOG1575|consen 73 EELLGEFIKSRGW--RRDKVVIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRAL 150 (336)
T ss_pred HHHHHHHHHhcCC--cCCcEEEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHH
Confidence 9999999999874 48999999999863 35677889999999999999999999999999998 8899999999
Q ss_pred HHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCCC
Q 023606 184 GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPRK 263 (280)
Q Consensus 184 ~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~~ 263 (280)
.+++++|+|++||+|+++.++|++++..+. +++.++|++||++.++.++.+++++|++.||++++||||++|+|+++
T Consensus 151 ~~lve~Gki~yiGlSe~sa~~I~~a~~~~~---~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk 227 (336)
T KOG1575|consen 151 TDLVEQGKIRYWGLSEWSAEEIREAHAVAP---IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGK 227 (336)
T ss_pred HHHHhcCceEEEEeccCCHHHHHHHHHhcC---CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccC
Confidence 999999999999999999999999999854 56999999999999998888899999999999999999999999999
Q ss_pred CCCC
Q 023606 264 RNWW 267 (280)
Q Consensus 264 ~~~~ 267 (280)
|+..
T Consensus 228 ~~~~ 231 (336)
T KOG1575|consen 228 YKLG 231 (336)
T ss_pred cccc
Confidence 9753
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=5.2e-48 Score=356.96 Aligned_cols=216 Identities=30% Similarity=0.423 Sum_probs=189.0
Q ss_pred ccccceeecCCCCccccceeeeccc-cCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCC--CCCCCCchh
Q 023606 33 KTAEDKVKLGGSDLKVTKLGVGAWS-WGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINS 109 (280)
Q Consensus 33 ~~~m~~r~lg~tg~~vs~lglGt~~-~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~--g~~~~~~~s 109 (280)
.+.|++|+||+||++||+||||||+ +|.. .+.+++.++|+.|++.|||+||||+.||+ |.+
T Consensus 10 ~~~m~~r~lg~tg~~vs~lglG~~~~~g~~----------~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~s------ 73 (346)
T PRK09912 10 YGQMQYRYCGKSGLRLPALSLGLWHNFGHV----------NALESQRAILRKAFDLGITHFDLANNYGPPPGSA------ 73 (346)
T ss_pred CCCcceeecCCCCcccccccccCccccCCC----------CCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCc------
Confidence 3459999999999999999999996 3321 24567899999999999999999999995 878
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCC------CCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-CCchhHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAAL------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDG 182 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~------~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~ 182 (280)
|+.+|++|++.... +|++++|+||++.. ....+++.+++++++||++||+||||+|++|+|+. .+.+++|++
T Consensus 74 E~~lG~~l~~~~~~-~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~a 152 (346)
T PRK09912 74 EENFGRLLREDFAA-YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASA 152 (346)
T ss_pred HHHHHHHHHhcccC-CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHH
Confidence 99999999874211 38999999998631 12367899999999999999999999999999987 567899999
Q ss_pred HHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCC
Q 023606 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPR 262 (280)
Q Consensus 183 L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~ 262 (280)
|++|+++|+|++||||||++++++++.+.+...++++.++|++||++++..+..+++++|+++||++++|+||++|+|++
T Consensus 153 l~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~ 232 (346)
T PRK09912 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTG 232 (346)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccC
Confidence 99999999999999999999999998887666667889999999999987654469999999999999999999999999
Q ss_pred CCC
Q 023606 263 KRN 265 (280)
Q Consensus 263 ~~~ 265 (280)
++.
T Consensus 233 ~~~ 235 (346)
T PRK09912 233 KYL 235 (346)
T ss_pred CCC
Confidence 874
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.8e-47 Score=349.54 Aligned_cols=212 Identities=26% Similarity=0.375 Sum_probs=186.0
Q ss_pred eeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHH
Q 023606 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (280)
Q Consensus 38 ~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL 117 (280)
||+||+||++||+||||||.+.+. ..+++++.++|+.|+++|||+||||+.||.|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~g~---------~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~s------E~~lG~~l 65 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTFGG---------QISDEMAEQLLTLAYENGINLFDTAEVYAAGKA------EVVLGNIL 65 (317)
T ss_pred CcccCCCCCeecceeecCCccCCC---------CCCHHHHHHHHHHHHHcCCCeEECccccCCCcc------HHHHHHHH
Confidence 589999999999999999974221 145688999999999999999999999999988 99999999
Q ss_pred HhcccCCCCCcEEEEecCCCC-----CCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-CCchhHHHHHHHHHHcCc
Q 023606 118 KERKQRDPEVEVTVATKFAAL-----PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGL 191 (280)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~-----~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~L~~lk~~G~ 191 (280)
+.... +|++++|+||++.. ..+.+++.+++++++||++||+||||+|++|||+. .+.+++|++|++|+++|+
T Consensus 66 ~~~~~--~R~~~~iaTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ 143 (317)
T TIGR01293 66 KKKGW--RRSSYVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGM 143 (317)
T ss_pred HhcCC--CcccEEEEeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCC
Confidence 96532 38999999998531 12467999999999999999999999999999987 567899999999999999
Q ss_pred ccEEEecCccHHHHHHHHHHHHhcC-CCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCCCCCC
Q 023606 192 VKAVGVSNYSEKRLRNAYEKLKKRG-IPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPRKRNW 266 (280)
Q Consensus 192 ir~iGvS~~~~~~i~~~~~~~~~~~-~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~~~~~ 266 (280)
||+||+|||+.++++++...+...+ ++++++|++||+++++..+.+++++|+++||++++|+||++|+|++++..
T Consensus 144 ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~ 219 (317)
T TIGR01293 144 AMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDS 219 (317)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCC
Confidence 9999999999999998887766555 57899999999999875444699999999999999999999999999854
No 5
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.6e-47 Score=338.65 Aligned_cols=195 Identities=35% Similarity=0.571 Sum_probs=175.6
Q ss_pred ccceeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHH
Q 023606 35 AEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLG 114 (280)
Q Consensus 35 ~m~~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG 114 (280)
++.+.+|++ |.+||.||||||++++. +.+.+.+.+|++.|||+||||..||+ |+.+|
T Consensus 2 ~~~~~~l~~-g~~iP~iGlGt~~~~~~-------------~~~~~av~~Al~~Gyr~IDTA~~Ygn---------E~~VG 58 (280)
T COG0656 2 MKTKVTLNN-GVEIPAIGLGTWQIGDD-------------EWAVRAVRAALELGYRLIDTAEIYGN---------EEEVG 58 (280)
T ss_pred CCceeecCC-CCcccCcceEeeecCCc-------------hhHHHHHHHHHHhCcceEecHhHhcC---------HHHHH
Confidence 456788998 88899999999998775 33889999999999999999999998 99999
Q ss_pred HHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCC--C-chhHHHHHHHHHHcCc
Q 023606 115 RFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--G-NEGFIDGLGDAVEQGL 191 (280)
Q Consensus 115 ~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~--~-~~~~~~~L~~lk~~G~ 191 (280)
+++++.+. +|+++||+||++. .+.+++.+.+++++||++||+||+|||++|||.+. . ..++|++|++|+++|+
T Consensus 59 ~aI~~s~v--~ReelFittKvw~--~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ 134 (280)
T COG0656 59 EAIKESGV--PREELFITTKVWP--SDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGL 134 (280)
T ss_pred HHHHhcCC--CHHHeEEEeecCC--ccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCC
Confidence 99999555 5899999999986 56788999999999999999999999999999752 2 4799999999999999
Q ss_pred ccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCC-CCC
Q 023606 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGS-KPR 262 (280)
Q Consensus 192 ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~-L~~ 262 (280)
||+||||||+.++++++++.+ .+.|.+||++||++.++.+ ++++|+++||.+++||||+.|. |..
T Consensus 135 ir~IGVSNF~~~~L~~l~~~~---~~~p~~NQIe~hp~~~q~e---l~~~~~~~gI~v~AysPL~~g~~l~~ 200 (280)
T COG0656 135 IRAIGVSNFGVEHLEELLSLA---KVKPAVNQIEYHPYLRQPE---LLPFCQRHGIAVEAYSPLAKGGKLLD 200 (280)
T ss_pred ccEEEeeCCCHHHHHHHHHhc---CCCCceEEEEeccCCCcHH---HHHHHHHcCCEEEEECCccccccccc
Confidence 999999999999999998873 3789999999999998875 9999999999999999999755 443
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.3e-46 Score=347.63 Aligned_cols=211 Identities=27% Similarity=0.420 Sum_probs=185.2
Q ss_pred cceeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCC-------CCCCCCch
Q 023606 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGS-------RASFGAIN 108 (280)
Q Consensus 36 m~~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-------g~~~~~~~ 108 (280)
|+||+||+||++||+||||||++|+. .+++++.++|+.|+++||||||||+.||. |.+
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~~----------~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~s----- 65 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGEQ----------NSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLT----- 65 (346)
T ss_pred CCceecCCCCCccccEeEeccccCCC----------CCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCch-----
Confidence 78999999999999999999998753 35688999999999999999999999984 666
Q ss_pred hhHHHHHHHHhcccCCCCCcEEEEecCCCCC----------CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-----
Q 023606 109 SETLLGRFIKERKQRDPEVEVTVATKFAALP----------WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----- 173 (280)
Q Consensus 109 sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~----------~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~----- 173 (280)
|+.+|++|+..+ +|++++|+||++... ...+++.+++++++||++||+||||+|++|||+.
T Consensus 66 -E~~iG~aL~~~~---~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~ 141 (346)
T PRK10625 66 -ETYIGNWLAKRG---SREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCF 141 (346)
T ss_pred -HHHHHHHHhhcC---CcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccc
Confidence 999999998653 389999999985311 1467899999999999999999999999999864
Q ss_pred -------------CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCC-CEEEEcccCCccCCCcchhhHH
Q 023606 174 -------------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-PLASNQVNYSLIYRKPEENGVK 239 (280)
Q Consensus 174 -------------~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~-~~~~~q~~~n~~~~~~~~~~l~ 239 (280)
.+.+++|++|++|+++|+|++||+|||+.+.++++...+...+. .+.++|++||++++..+. +++
T Consensus 142 ~~~~~~~~~~~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~-~ll 220 (346)
T PRK10625 142 GKLGYSWTDSAPAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEV-GLA 220 (346)
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchh-HHH
Confidence 23578999999999999999999999999999988876655554 588999999999987644 699
Q ss_pred HHHHHcCCeEEEcccCcCCCCCCCCCC
Q 023606 240 AACDELGITLIAYCPIAQGSKPRKRNW 266 (280)
Q Consensus 240 ~~~~~~gi~i~a~spl~~G~L~~~~~~ 266 (280)
++|+++||++++|+||++|+|++++..
T Consensus 221 ~~~~~~gi~via~spL~~G~Ltg~~~~ 247 (346)
T PRK10625 221 EVSQYEGVELLAYSCLAFGTLTGKYLN 247 (346)
T ss_pred HHHHHcCCeEEEeccccCeeccCCCCC
Confidence 999999999999999999999998753
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=3.7e-46 Score=340.38 Aligned_cols=211 Identities=24% Similarity=0.340 Sum_probs=182.2
Q ss_pred eeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHH
Q 023606 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (280)
Q Consensus 38 ~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL 117 (280)
||+||+||++||+||||||++|+. | ...+++++.++|++|+++|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~--~-----~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~s------E~~lG~al 67 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSV--F-----GPVSEEDAIASVREAFRLGINFFDTSPYYGGTLS------EKVLGKAL 67 (314)
T ss_pred CCcCCCCCCcccCcccccccccCC--C-----CCCCHHHHHHHHHHHHHcCCCEEECcCccCCCch------HHHHHHHH
Confidence 689999999999999999999864 3 2356789999999999999999999999999988 99999999
Q ss_pred HhcccCCCCCcEEEEecCCCCC--CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC----CCchhHHHHHHHHHHcCc
Q 023606 118 KERKQRDPEVEVTVATKFAALP--WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL 191 (280)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~~--~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~----~~~~~~~~~L~~lk~~G~ 191 (280)
++.+. +|++++|+||++... .+.+++.+++++++||++||+||||+|++|+|+. .+.+++|++|++|+++||
T Consensus 68 ~~~~~--~R~~v~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gk 145 (314)
T PLN02587 68 KALGI--PREKYVVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGK 145 (314)
T ss_pred HhCCC--CcceEEEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCC
Confidence 98643 389999999997422 3578999999999999999999999999999974 234689999999999999
Q ss_pred ccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCCCCC
Q 023606 192 VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPRKRN 265 (280)
Q Consensus 192 ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~~~~ 265 (280)
||+||+|||++++++.+.+......+.+..+|+.||+.++..+ +++++|+++||++++|+||++|+|++++.
T Consensus 146 ir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~ll~~~~~~gi~v~a~spl~~G~L~~~~~ 217 (314)
T PLN02587 146 VRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE--DLLPYLKSKGVGVISASPLAMGLLTENGP 217 (314)
T ss_pred eEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH--HHHHHHHHcCceEEEechhhccccCCCCC
Confidence 9999999999999888876533222456667899999876433 69999999999999999999999999853
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=1.2e-44 Score=325.28 Aligned_cols=208 Identities=41% Similarity=0.638 Sum_probs=187.7
Q ss_pred eeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHH
Q 023606 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (280)
Q Consensus 38 ~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL 117 (280)
+|+||+||++||+||||||.++.. | .+.+++.++++.|++.|||+||||+.||+|.+ |+.+|++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~--~-------~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~s------E~~lG~al 65 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGG--Y-------VDEEEAAAAVRAALDAGINFIDTADVYGDGES------EELLGEAL 65 (285)
T ss_pred CcccCCCCceecCcceeccccCCC--C-------CCHHHHHHHHHHHHHcCCCeEECccccCCCCC------HHHHHHHH
Confidence 589999999999999999998764 1 45689999999999999999999999999988 99999999
Q ss_pred HhcccCCCCCcEEEEecCCCCC---CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCC-C-chhHHHHHHHHHHcCcc
Q 023606 118 KERKQRDPEVEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-G-NEGFIDGLGDAVEQGLV 192 (280)
Q Consensus 118 ~~~~~~~~R~~~~I~tK~~~~~---~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~-~-~~~~~~~L~~lk~~G~i 192 (280)
+..+ +|++++|+||++... ...+++.+++++++||++|++||||+|++|+|+.. . ..++|++|++||++|+|
T Consensus 66 ~~~~---~R~~~~i~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~i 142 (285)
T cd06660 66 KERG---PREEVFIATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKI 142 (285)
T ss_pred hccC---CcCcEEEEeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 9876 389999999998632 23689999999999999999999999999999873 3 78999999999999999
Q ss_pred cEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCCCCCCC
Q 023606 193 KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPRKRNWW 267 (280)
Q Consensus 193 r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~~~~~~ 267 (280)
|+||||+|+++.++++++.+ ..+|+++|++||++++..+. +++++|+++||++++|+||++|.|++++...
T Consensus 143 r~iGvS~~~~~~l~~~~~~~---~~~~~~~q~~~n~~~~~~~~-~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~ 213 (285)
T cd06660 143 RAIGVSNFSAEQLEEALAAA---GVPPAVNQVEYNLLDRQAEE-ELLPYCREHGIGVIAYSPLAGGLLTGKYLPG 213 (285)
T ss_pred cEEEeeCCCHHHHHHHHHhh---CCCceEEecccCcccCchHH-HHHHHHHHcCcEEEEeccccCceecCCCCCC
Confidence 99999999999999998764 36899999999999998765 5999999999999999999999999887643
No 9
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=3.5e-43 Score=311.32 Aligned_cols=191 Identities=29% Similarity=0.464 Sum_probs=171.9
Q ss_pred eeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHH
Q 023606 38 KVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI 117 (280)
Q Consensus 38 ~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL 117 (280)
+.+|.+ |.+||.||||||+. +++++.+.++.|++.||||||||..|+| |+.+|++|
T Consensus 6 ~~~Ln~-G~~mP~iGlGTw~~--------------~~~~~~~aV~~Al~~GYRHIDtA~~Y~N---------E~evG~ai 61 (300)
T KOG1577|consen 6 TVKLNN-GFKMPIIGLGTWQS--------------PPGQVAEAVKAAIKAGYRHIDTAHVYGN---------EKEVGEAI 61 (300)
T ss_pred eEeccC-CCccceeeeEeccc--------------ChhhHHHHHHHHHHhCcceeechhhhCC---------hHHHHHHH
Confidence 678887 99999999999972 3478999999999999999999999999 99999999
Q ss_pred HhcccCC--CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCC-----------------Cchh
Q 023606 118 KERKQRD--PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----------------GNEG 178 (280)
Q Consensus 118 ~~~~~~~--~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~-----------------~~~~ 178 (280)
++..... +|+++||+||+|. ....++.++.++++||++||+||+|||++|||-.. +..+
T Consensus 62 k~~i~~~~v~RediFiTSKlw~--~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~ 139 (300)
T KOG1577|consen 62 KELLAEGGVKREDIFITSKLWP--TDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIE 139 (300)
T ss_pred HHHhhhCCcchhhheeeeccCc--cccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHH
Confidence 9775333 7999999999975 44789999999999999999999999999998653 2357
Q ss_pred HHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCC
Q 023606 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 179 ~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G 258 (280)
+|++||++++.|++|+||||||+..++++++..++ ++|.++|+++|++.++. +++++|+++||-+.||||||.+
T Consensus 140 tW~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~k---i~P~vnQvE~HP~~~Q~---~L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 140 TWKAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAK---IKPAVNQVECHPYLQQK---KLVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred HHHHHHHHHHcCCceEeeeecCCHHHHHHHHhcCC---CCCccceeeccCCcChH---HHHHHHhhCCcEEEEecCCCCC
Confidence 99999999999999999999999999999998863 89999999999977665 4999999999999999999987
Q ss_pred CC
Q 023606 259 SK 260 (280)
Q Consensus 259 ~L 260 (280)
.-
T Consensus 214 ~~ 215 (300)
T KOG1577|consen 214 GR 215 (300)
T ss_pred CC
Confidence 65
No 10
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.1e-42 Score=312.57 Aligned_cols=198 Identities=20% Similarity=0.220 Sum_probs=167.6
Q ss_pred CccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCC
Q 023606 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (280)
Q Consensus 45 g~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~ 124 (280)
+++||+||||||+||+.+.|...+++.++++++.++|+.|++.||||||||+.||. + |+.+|++|+..
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--S------E~~lG~al~~~---- 69 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR--A------ETVLGQLIPRP---- 69 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh--H------HHHHhhhhccC----
Confidence 67899999999999863111111133467899999999999999999999999974 4 99999999742
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC--CCc-hhHHHHHHHHHHcCcccEEEecCcc
Q 023606 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGN-EGFIDGLGDAVEQGLVKAVGVSNYS 201 (280)
Q Consensus 125 ~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~--~~~-~~~~~~L~~lk~~G~ir~iGvS~~~ 201 (280)
.|++++|+||. ...+++.+++++++||+|||+||||+|++|+|+. .+. +++|++|++|+++||||+||+|||+
T Consensus 70 ~~~~~~i~tk~----~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~ 145 (292)
T PRK14863 70 VPFRVTLSTVR----ADRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHA 145 (292)
T ss_pred CceEeeccccc----ccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccC
Confidence 14678999986 3467899999999999999999999999999976 223 5789999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCCC
Q 023606 202 EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPRK 263 (280)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~~ 263 (280)
+++++++.+. .+|+++|++||++++..+..+++++|+++||++++|+||++|+|++.
T Consensus 146 ~~~~~~~~~~-----~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~ 202 (292)
T PRK14863 146 SDDPVGVARR-----FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLP 202 (292)
T ss_pred HHHHHHHHhc-----CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCC
Confidence 9988877543 58999999999999876433699999999999999999999999864
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.3e-42 Score=309.14 Aligned_cols=201 Identities=34% Similarity=0.543 Sum_probs=170.4
Q ss_pred ceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcE
Q 023606 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEV 129 (280)
Q Consensus 50 ~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~ 129 (280)
+||||||++++. ..+++++.++|+.|++.|||+||||+.||+|.+ |+.+|++|++... +|+++
T Consensus 1 ~l~lG~~~~~~~---------~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~s------E~~lg~~l~~~~~--~r~~~ 63 (283)
T PF00248_consen 1 PLGLGTWRLGGE---------RVSEEEAEAILRRALEAGINFFDTADSYGNGRS------ERILGRALRKSRV--PRDDI 63 (283)
T ss_dssp SBEEECTTBTTT---------TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTH------HHHHHHHHHHTSS--TGGGS
T ss_pred CEEEEccccCCC---------CCCHHHHHHHHHHHHHcCCCeeccccccccccc------ccccccccccccc--ccccc
Confidence 689999998762 367899999999999999999999999999988 9999999999333 48999
Q ss_pred EEEecCC---CCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-CC-chhHHHHHHHHHHcCcccEEEecCccHHH
Q 023606 130 TVATKFA---ALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (280)
Q Consensus 130 ~I~tK~~---~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-~~-~~~~~~~L~~lk~~G~ir~iGvS~~~~~~ 204 (280)
+|+||+. ......+++.+++++++||++||+||||+|++|+|+. .. ..++|++|++|+++|+||+||||+|+++.
T Consensus 64 ~i~tK~~~~~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~ 143 (283)
T PF00248_consen 64 FISTKVYGDGKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQ 143 (283)
T ss_dssp EEEEEEESSSSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHH
T ss_pred cccccccccccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccc
Confidence 9999991 1235799999999999999999999999999999998 55 78999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCCCCCCCCCcc
Q 023606 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPRKRNWWFHCL 271 (280)
Q Consensus 205 i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~~~~~~~~~~ 271 (280)
++++ .+...++|+++|++||++++.... +++++|+++||++++|+||++|.|++++.....++
T Consensus 144 l~~~---~~~~~~~~~~~q~~~n~~~~~~~~-~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~ 206 (283)
T PF00248_consen 144 LEAA---LKIGSIPPDVVQINYNLLNRREEE-GLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPP 206 (283)
T ss_dssp HHHH---HTCTSS-ESEEEEE-BTTBHBGGH-HHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTST
T ss_pred cccc---cccccccccccccccccccccccc-cccccccccccccccccccccCccccccccCCCcc
Confidence 9998 223347899999999999555544 69999999999999999999999999987654443
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.3e-41 Score=307.23 Aligned_cols=196 Identities=23% Similarity=0.353 Sum_probs=168.9
Q ss_pred eecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHH
Q 023606 39 VKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK 118 (280)
Q Consensus 39 r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~ 118 (280)
++|+ |++||+||||||++++.++|+. ..+++++.++|+.|+++|||+||||+.||+|.+ |+.+|++|+
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~----~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~s------E~~lg~~l~ 77 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGP----PKDRDAAIAVLREAVALGVNHIDTSDFYGPHVT------NQLIREALH 77 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCC----CCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcH------HHHHHHHHh
Confidence 4554 8999999999999987544542 235688999999999999999999999999988 999999996
Q ss_pred hcccCCCCCcEEEEecCCCC-------CCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCC------CCCchhHHHHHHH
Q 023606 119 ERKQRDPEVEVTVATKFAAL-------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG------IWGNEGFIDGLGD 185 (280)
Q Consensus 119 ~~~~~~~R~~~~I~tK~~~~-------~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd------~~~~~~~~~~L~~ 185 (280)
.. |++++|+||++.. ....+++.+++++++||+||++||||+|++|+++ ..+..++|++|++
T Consensus 78 ~~-----R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~ 152 (290)
T PRK10376 78 PY-----PDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAE 152 (290)
T ss_pred cC-----CCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHH
Confidence 42 7999999998631 2357799999999999999999999999988742 2346789999999
Q ss_pred HHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCC
Q 023606 186 AVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 186 lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G 258 (280)
|+++||||+||+|||++++++++.+. .+++++|++||++++..+ +++++|+++||++++|+||+++
T Consensus 153 l~~~Gkir~iGvSn~~~~~l~~~~~~-----~~~~~~q~~~~~~~~~~~--~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 153 LQRQGLVRHIGLSNVTPTQVAEARKI-----AEIVCVQNHYNLAHRADD--ALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred HHHCCceeEEEecCCCHHHHHHHHhh-----CCeEEEecccCCCcCChH--HHHHHHHHcCCEEEEeecCCCC
Confidence 99999999999999999999998775 578999999999987643 6999999999999999999744
No 13
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.3e-41 Score=303.92 Aligned_cols=185 Identities=28% Similarity=0.458 Sum_probs=162.6
Q ss_pred ccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCC
Q 023606 46 LKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (280)
Q Consensus 46 ~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~ 125 (280)
.+||.||||||+++. +++.++++.|++.|||+||||+.||+ |+.+|++|+..+. +
T Consensus 1 ~~vs~lglGt~~~~~--------------~~~~~~i~~A~~~Gi~~~DTA~~Yg~---------E~~lG~al~~~~~--~ 55 (267)
T PRK11172 1 MSIPAFGLGTFRLKD--------------QVVIDSVKTALELGYRAIDTAQIYDN---------EAAVGQAIAESGV--P 55 (267)
T ss_pred CCCCCEeeEccccCh--------------HHHHHHHHHHHHcCCCEEEccchhCC---------HHHHHHHHHHcCC--C
Confidence 369999999997642 57899999999999999999999996 9999999997543 3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC---CCchhHHHHHHHHHHcCcccEEEecCccH
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~---~~~~~~~~~L~~lk~~G~ir~iGvS~~~~ 202 (280)
|+++||+||++. ...+++.+++++++||+|||+||||+|++|+|++ .+.+++|++|++|+++||||+||+|||+.
T Consensus 56 R~~v~i~TK~~~--~~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~ 133 (267)
T PRK11172 56 RDELFITTKIWI--DNLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTI 133 (267)
T ss_pred hhHeEEEEEeCC--CCCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCH
Confidence 899999999864 3578899999999999999999999999999975 35678999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCC
Q 023606 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPR 262 (280)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~ 262 (280)
++++++++.+. ..+++++|++||++++. .+++++|+++||++++|+||++|.+..
T Consensus 134 ~~l~~~~~~~~--~~~~~~~Q~~~~~~~~~---~~ll~~~~~~gi~v~a~spl~~G~~~~ 188 (267)
T PRK11172 134 ALMKQAIAAVG--AENIATNQIELSPYLQN---RKVVAFAKEHGIHVTSYMTLAYGKVLK 188 (267)
T ss_pred HHHHHHHHhcC--CCCCeEEeeecCCCCCc---HHHHHHHHHCCCEEEEECCCCCCcccC
Confidence 99999876521 12689999999999874 269999999999999999999997643
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=2.7e-42 Score=294.79 Aligned_cols=208 Identities=22% Similarity=0.402 Sum_probs=190.0
Q ss_pred cceeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHH
Q 023606 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (280)
Q Consensus 36 m~~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~ 115 (280)
|++.++++.++++|+|.+|+|++.. |+ +++.++...|+.|++.|||+||-|+.||++.. |+++|.
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d---~~------~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~c------E~~fg~ 65 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND---WN------MSARELLSFIETALELGITTFDHADIYGGYQC------EALFGE 65 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh---cc------CCHHHHHHHHHHHHHcCcccchhhhhcCCccH------HHHHHH
Confidence 7899999999999999999999876 44 45588999999999999999999999999988 999999
Q ss_pred HHHhcccCCCCCcEEEEecCCC----------CCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-CCchhHHHHHH
Q 023606 116 FIKERKQRDPEVEVTVATKFAA----------LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLG 184 (280)
Q Consensus 116 aL~~~~~~~~R~~~~I~tK~~~----------~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~L~ 184 (280)
+|+..+.- |+++.|+||+|. .+++.+.++|..++++||++|++||+|+++||+||+ .+.+++-+++.
T Consensus 66 aL~l~p~l--RekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~ 143 (298)
T COG4989 66 ALKLAPGL--REKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFT 143 (298)
T ss_pred HHhcChhh--hhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHH
Confidence 99987653 899999999995 157899999999999999999999999999999999 89999999999
Q ss_pred HHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCCC
Q 023606 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPRK 263 (280)
Q Consensus 185 ~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~~ 263 (280)
.|++.||||++|||||++.+++-+.+... .++..||++.|+++......+.+++|+++.|.+++||||++|.+...
T Consensus 144 ~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~---~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g 219 (298)
T COG4989 144 HLHKSGKVRHFGVSNFNPAQFELLQSRLP---FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG 219 (298)
T ss_pred HHHhcCCeeeeecCCCCHHHHHHHHHhcc---chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC
Confidence 99999999999999999999999987743 46889999999999888777899999999999999999998866554
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=9.4e-40 Score=292.99 Aligned_cols=187 Identities=26% Similarity=0.404 Sum_probs=164.2
Q ss_pred ceeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHH
Q 023606 37 DKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRF 116 (280)
Q Consensus 37 ~~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~a 116 (280)
++.+|. +|+.||+||||||+++ ++++.++|+.|+++|+|+||||+.||+ |+.+|++
T Consensus 5 ~~~~l~-~g~~v~~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~DTA~~Yg~---------E~~lG~a 60 (275)
T PRK11565 5 TVIKLQ-DGNVMPQLGLGVWQAS--------------NEEVITAIHKALEVGYRSIDTAAIYKN---------EEGVGKA 60 (275)
T ss_pred ceEEcC-CCCccCCcceECccCC--------------HHHHHHHHHHHHHhCCCEEEchhhhCC---------HHHHHHH
Confidence 346674 6999999999999752 368999999999999999999999986 9999999
Q ss_pred HHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCC--CchhHHHHHHHHHHcCcccE
Q 023606 117 IKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKA 194 (280)
Q Consensus 117 L~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~--~~~~~~~~L~~lk~~G~ir~ 194 (280)
|+..+. +|++++|+||++ ..+++.+++++++||++|++||||+|++|+|+.. +..++|++|++|+++|+||+
T Consensus 61 l~~~~~--~R~~~~i~tK~~----~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~ 134 (275)
T PRK11565 61 LKEASV--AREELFITTKLW----NDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKS 134 (275)
T ss_pred HHHcCC--CHHHEEEEEEec----CcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeE
Confidence 997543 379999999984 3467899999999999999999999999999862 35799999999999999999
Q ss_pred EEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCC
Q 023606 195 VGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGS 259 (280)
Q Consensus 195 iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~ 259 (280)
||+|||++++++++++. .++++.++|++||++.+.. +++++|+++||++++|+||++|.
T Consensus 135 iGvSn~~~~~l~~~~~~---~~v~~~~~Q~~~~~~~~~~---~~~~~~~~~~i~~~a~spl~~G~ 193 (275)
T PRK11565 135 IGVCNFQIHHLQRLIDE---TGVTPVINQIELHPLMQQR---QLHAWNATHKIQTESWSPLAQGG 193 (275)
T ss_pred EeeccCCHHHHHHHHHh---CCCCceeeeeecCCccchH---HHHHHHHHCCCEEEEEccCCCCC
Confidence 99999999999998753 3467899999999988742 59999999999999999999773
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=6.5e-40 Score=282.21 Aligned_cols=222 Identities=21% Similarity=0.263 Sum_probs=194.8
Q ss_pred cccccccccceeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCc
Q 023606 28 GFATVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAI 107 (280)
Q Consensus 28 ~~~~~~~~m~~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~ 107 (280)
...+..+.|.||.+|+||++||+|+||...++.. |.+.++++....+..|++.|||+|||++.||.+++
T Consensus 14 hde~~vrrmeyR~lg~tgl~VSk~~fGga~L~~~-------fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~s---- 82 (342)
T KOG1576|consen 14 HDEEKVRRMEYRQLGSTGLRVSKLGFGGAALGQL-------FGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRS---- 82 (342)
T ss_pred CcHHHHHHHHHhhcCCCcceeeeeeecchhhhhh-------cCCcchhhhHHHHHHHHHccccceecCcccCcchh----
Confidence 3445566899999999999999999999999886 66677888888888899999999999999999999
Q ss_pred hhhHHHHHHHHhcccCCCCCcEEEEecCCCC------CCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC-----c
Q 023606 108 NSETLLGRFIKERKQRDPEVEVTVATKFAAL------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-----N 176 (280)
Q Consensus 108 ~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~------~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~-----~ 176 (280)
|+.+|.++++.+ |+..||+||++.. .++++++.+++++++||+||++||+|++++|+.+..+ .
T Consensus 83 --e~~lg~al~~vP----R~aYyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl 156 (342)
T KOG1576|consen 83 --EEGLGLALKDVP----REAYYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVL 156 (342)
T ss_pred --HHHHHHHHhhCC----hhheeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHH
Confidence 999999999986 9999999999962 2679999999999999999999999999999988743 5
Q ss_pred hhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEc--ccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 023606 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ--VNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 177 ~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q--~~~n~~~~~~~~~~l~~~~~~~gi~i~a~sp 254 (280)
.|.+.+|++||++||||+||++.++.+.+.++++. .-...+++- .+|++.+..-. ..+++.+++|++|+.-++
T Consensus 157 ~Etlp~Le~lk~~Gk~RfiGitgypldvl~~~ae~---~~G~~dvvlsY~ry~l~d~tLl--~~~~~~~sk~vgVi~Asa 231 (342)
T KOG1576|consen 157 NETLPALEELKQEGKIRFIGITGYPLDVLTECAER---GKGRLDVVLSYCRYTLNDNTLL--RYLKRLKSKGVGVINASA 231 (342)
T ss_pred HHHHHHHHHHHhcCceeEeeecccchHHHHHHHhc---CCCceeeehhhhhhccccHHHH--HHHHHHHhcCceEEehhh
Confidence 68899999999999999999999999999999754 224566665 66666665433 478889999999999999
Q ss_pred CcCCCCCCCCCCCCCcc
Q 023606 255 IAQGSKPRKRNWWFHCL 271 (280)
Q Consensus 255 l~~G~L~~~~~~~~~~~ 271 (280)
++.|+|+..-...|||.
T Consensus 232 lsmgLLt~~gp~~wHPa 248 (342)
T KOG1576|consen 232 LSMGLLTNQGPPPWHPA 248 (342)
T ss_pred HHHHHhhcCCCCCCCCC
Confidence 99999999999999985
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=5.9e-38 Score=281.40 Aligned_cols=207 Identities=21% Similarity=0.265 Sum_probs=182.8
Q ss_pred cceeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHH
Q 023606 36 EDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR 115 (280)
Q Consensus 36 m~~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~ 115 (280)
|.||++++||.++|.||||||++... |. ...|++.+.++|++|+++|||+||||..|-.|.| |..+|+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~--~~----~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~s------E~~lgk 68 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLK--EQ----GSIDEENANETIDYAIEHGINYIDTAWPYHGGES------EEFLGK 68 (391)
T ss_pred CchhhcCCCCcccceeccceeecccc--cC----CCccHHHHHHHHHHHHHcCCceEeecccccCCCc------hHHHHH
Confidence 78999999999999999999998665 33 4468899999999999999999999999977777 999999
Q ss_pred HHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-----CCchhHHHHHHHHHHcC
Q 023606 116 FIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-----WGNEGFIDGLGDAVEQG 190 (280)
Q Consensus 116 aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-----~~~~~~~~~L~~lk~~G 190 (280)
||++.. |++++++||+... ...+.+.+++-++++|++|++||+|+|+||..+. ....++++.++++|.+|
T Consensus 69 aL~~~~----Rekv~LaTKlp~~-~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eG 143 (391)
T COG1453 69 ALKDGY----REKVKLATKLPSW-PVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEG 143 (391)
T ss_pred Hhhhcc----cceEEEEeecCCc-cccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcC
Confidence 999986 8999999999642 3477889999999999999999999999999875 11445899999999999
Q ss_pred cccEEEecCc-cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcch-hhHHHHHHHcCCeEEEcccCcCCCCCCCC
Q 023606 191 LVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-NGVKAACDELGITLIAYCPIAQGSKPRKR 264 (280)
Q Consensus 191 ~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-~~l~~~~~~~gi~i~a~spl~~G~L~~~~ 264 (280)
+||++|||.| +++.+.+++.. .+++++|++||.++.+... .+.+++|.++|++|+.++|+.+|-|+.+.
T Consensus 144 kIr~~GFSfHgs~e~~~~iv~a-----~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v 214 (391)
T COG1453 144 KIRNAGFSFHGSTEVFKEIVDA-----YPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV 214 (391)
T ss_pred cEEEeeecCCCCHHHHHHHHhc-----CCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC
Confidence 9999999999 57888888776 7899999999999876542 25899999999999999999999998744
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.40 E-value=5.2e-07 Score=77.67 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=67.0
Q ss_pred chhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 023606 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 176 ~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
..+.|..||+++.+|+|..||+|.|+..++++++..++ ++|.++|++..-++.-+. +|.++|..++|.++.++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saq---VvP~snqVnL~~cCvvPp--dLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQ---VVPESNQVNLGQCCVVPP--DLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhc---cccccceeeccccccCCH--HHHHHhhhcceeeeecC
Confidence 34789999999999999999999999999999999876 899999999999887776 59999999999999885
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.91 E-value=4.9 Score=36.53 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCC-CCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS-RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
++++..+.++.+.+.|++.|+.-- |. ... +...=+++++.. . ++-|.-+.. ..++.+..+ .+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~------d~~~v~~lr~~~----g-~~~l~vD~n---~~~~~~~A~-~~ 196 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLED------DIERIRAIREAA----P-DARLRVDAN---QGWTPEEAV-EL 196 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhh------HHHHHHHHHHhC----C-CCeEEEeCC---CCcCHHHHH-HH
Confidence 346677788888999999998642 21 111 223334444432 1 455666663 234443322 22
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccC
Q 023606 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (280)
-+.|+.+++ .++-.|- + .+-++.+.+|++.-.|. ..|=+-++.+.++++++. ...+++|+.-..+-
T Consensus 197 ~~~l~~~~l-----~~iEeP~--~-~~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~-----~~~d~v~~~~~~~G 263 (316)
T cd03319 197 LRELAELGV-----ELIEQPV--P-AGDDDGLAYLRDKSPLPIMADESCFSAADAARLAGG-----GAYDGINIKLMKTG 263 (316)
T ss_pred HHHHHhcCC-----CEEECCC--C-CCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhc-----CCCCEEEEeccccC
Confidence 233444444 4444432 2 23477788888887665 445555688888888664 34777777655543
Q ss_pred CCcchhhHHHHHHHcCCeEEEcccCcC
Q 023606 231 RKPEENGVKAACDELGITLIAYCPIAQ 257 (280)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~i~a~spl~~ 257 (280)
.-.....+..+|+++|+.++..+-+..
T Consensus 264 Gi~~~~~~~~~a~~~gi~~~~~~~~~~ 290 (316)
T cd03319 264 GLTEALRIADLARAAGLKVMVGCMVES 290 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECchhh
Confidence 222223689999999999998755433
No 20
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.55 E-value=0.53 Score=43.10 Aligned_cols=154 Identities=17% Similarity=0.123 Sum_probs=90.8
Q ss_pred ccccccceeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCC--eEEcccccCCCCCCCCch
Q 023606 31 TVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEVYGSRASFGAIN 108 (280)
Q Consensus 31 ~~~~~m~~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~Yg~g~~~~~~~ 108 (280)
.+.++|.+..++ .|..+-.+|+|. +|.. .++.|-..|.+ .||+++
T Consensus 169 TvYspLk~~g~~-pG~~vgI~GlGG--LGh~------------------aVq~AKAMG~rV~vis~~~------------ 215 (360)
T KOG0023|consen 169 TVYSPLKRSGLG-PGKWVGIVGLGG--LGHM------------------AVQYAKAMGMRVTVISTSS------------ 215 (360)
T ss_pred EEeehhHHcCCC-CCcEEEEecCcc--cchH------------------HHHHHHHhCcEEEEEeCCc------------
Confidence 556689999999 599999999998 5543 45666666765 677653
Q ss_pred hhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHH
Q 023606 109 SETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (280)
Q Consensus 109 sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~ 188 (280)
+---++++.++. |.+++++|- ++ +.+++..++. .+. |.........+-..+.-||.
T Consensus 216 --~kkeea~~~LGA----d~fv~~~~d--------~d-~~~~~~~~~d-g~~--------~~v~~~a~~~~~~~~~~lk~ 271 (360)
T KOG0023|consen 216 --KKKEEAIKSLGA----DVFVDSTED--------PD-IMKAIMKTTD-GGI--------DTVSNLAEHALEPLLGLLKV 271 (360)
T ss_pred --hhHHHHHHhcCc----ceeEEecCC--------HH-HHHHHHHhhc-Ccc--------eeeeeccccchHHHHHHhhc
Confidence 222356677773 344444433 22 2333333322 122 22211122345566777899
Q ss_pred cCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeE
Q 023606 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (280)
Q Consensus 189 ~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i 249 (280)
.|++-.+|+-.. +..+..+- .-+-...+-.|.+-...+.+++++||.+++|..
T Consensus 272 ~Gt~V~vg~p~~-~~~~~~~~-------lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~ 324 (360)
T KOG0023|consen 272 NGTLVLVGLPEK-PLKLDTFP-------LILGRKSIKGSIVGSRKETQEALDFVARGLIKS 324 (360)
T ss_pred CCEEEEEeCcCC-cccccchh-------hhcccEEEEeeccccHHHHHHHHHHHHcCCCcC
Confidence 999999999875 22222221 113334455566666666778899998887743
No 21
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=92.17 E-value=5.4 Score=35.27 Aligned_cols=157 Identities=12% Similarity=0.095 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (280)
.++..+.++.+.+.|++.|-.-- |. .. ..+...=+++++.. ..++-|..... ..++.+...+-+ +
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKv--g~-~~----~~d~~~v~~vr~~~----g~~~~l~vDan---~~~~~~~a~~~~-~ 150 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKV--GR-DP----ARDVAVVAALREAV----GDDAELRVDAN---RGWTPKQAIRAL-R 150 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEec--CC-CH----HHHHHHHHHHHHhc----CCCCEEEEeCC---CCcCHHHHHHHH-H
Confidence 35666777888899999887532 11 00 00223334555443 13555555542 234544433333 2
Q ss_pred HHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCC
Q 023606 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (280)
.|+.++ +.++..|-. .+-++.+.+|++.-.+. ..|=+-++...+.++++. ..++++|+..+.+-.-
T Consensus 151 ~l~~~~-----i~~iEeP~~---~~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~-----~~~d~v~~k~~~~GGi 217 (265)
T cd03315 151 ALEDLG-----LDYVEQPLP---ADDLEGRAALARATDTPIMADESAFTPHDAFRELAL-----GAADAVNIKTAKTGGL 217 (265)
T ss_pred HHHhcC-----CCEEECCCC---cccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHh-----CCCCEEEEecccccCH
Confidence 334444 444555532 23467788888776554 445555688888887664 3477777776554432
Q ss_pred cchhhHHHHHHHcCCeEEEcccCcCC
Q 023606 233 PEENGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 233 ~~~~~l~~~~~~~gi~i~a~spl~~G 258 (280)
.+...+.+.|+++|+.++..+.+..+
T Consensus 218 ~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 218 TKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred HHHHHHHHHHHHcCCcEEecCccchH
Confidence 22236899999999999987665544
No 22
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=91.23 E-value=6.9 Score=36.13 Aligned_cols=155 Identities=13% Similarity=0.076 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCC-----CCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS-----RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-----g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i 147 (280)
+.++..+..+.+.+.|++.|-.--..+. .+. +...=+++++.. ..++.|..... ..++.+..
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~------d~~~v~~ir~~~----g~~~~l~vDaN---~~~~~~~a 205 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLRE------DLARVRAVREAV----GPDVDLMVDAN---GRWDLAEA 205 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHH------HHHHHHHHHHhh----CCCCEEEEECC---CCCCHHHH
Confidence 3466777888888999998875321111 001 222234454432 14555666652 23454433
Q ss_pred HHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccC
Q 023606 148 LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (280)
Q Consensus 148 ~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (280)
. +.+++|. ..++.++..|-+ .+-++.+.+|++.-.+. ..|=|-++++.++++++. ..++++|+..
T Consensus 206 ~----~~~~~l~--~~~i~~iEqP~~---~~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~-----~~~d~v~~k~ 271 (357)
T cd03316 206 I----RLARALE--EYDLFWFEEPVP---PDDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEA-----GAVDIIQPDV 271 (357)
T ss_pred H----HHHHHhC--ccCCCeEcCCCC---ccCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHh-----CCCCEEecCc
Confidence 3 2333332 234555665533 23577788888875554 444555688888888764 3477777766
Q ss_pred CccCCCcchhhHHHHHHHcCCeEEEccc
Q 023606 227 SLIYRKPEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 227 n~~~~~~~~~~l~~~~~~~gi~i~a~sp 254 (280)
..+---.....+.+.|+++|+.++..+.
T Consensus 272 ~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 272 TKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred cccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 5543222223689999999999987764
No 23
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=90.62 E-value=2.2 Score=37.65 Aligned_cols=120 Identities=16% Similarity=0.064 Sum_probs=65.4
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHH-----------------HHHhcccCCCCCcEEEEec
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGR-----------------FIKERKQRDPEVEVTVATK 134 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~-----------------aL~~~~~~~~R~~~~I~tK 134 (280)
.+.++..++.+++-+.||.||-|...... -..+-+ .|+.... ....++|+|=
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s---------~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~--tgkPvIlSTG 121 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEES---------VDFLEELGVPAYKIASGDLTNLPLLEYIAK--TGKPVILSTG 121 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHH---------HHHHHHHT-SEEEE-GGGTT-HHHHHHHHT--T-S-EEEE-T
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHH---------HHHHHHcCCCEEEeccccccCHHHHHHHHH--hCCcEEEECC
Confidence 56789999999999999999988643321 111111 1111111 1356777765
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC--c-hhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 023606 135 FAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--N-EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (280)
Q Consensus 135 ~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~--~-~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~ 211 (280)
. .+.+.|.++++...++- .-|+.++|+...+| . +-=+..|..|++.=- -.||+|.|+.....-++.+
T Consensus 122 ~------stl~EI~~Av~~~~~~~---~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~~~~~~Av 191 (241)
T PF03102_consen 122 M------STLEEIERAVEVLREAG---NEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGIEAPIAAV 191 (241)
T ss_dssp T--------HHHHHHHHHHHHHHC---T--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSSHHHHHHH
T ss_pred C------CCHHHHHHHHHHHHhcC---CCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCcHHHHHHH
Confidence 5 45667777777664443 35999999988744 2 223556666665422 6789999987554444444
Q ss_pred H
Q 023606 212 L 212 (280)
Q Consensus 212 ~ 212 (280)
+
T Consensus 192 a 192 (241)
T PF03102_consen 192 A 192 (241)
T ss_dssp H
T ss_pred H
Confidence 3
No 24
>PRK08392 hypothetical protein; Provisional
Probab=90.54 E-value=10 Score=32.48 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHH---HhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFI---KERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL---~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
....+.++.|.+.|++.|=.+++..... ...+-..+ ++.... .+=++++..-++..+ +. .+..
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~-------~~~~~~y~~~i~~l~~~-~~i~il~GiE~~~~~-----~~-~~~~ 79 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFT-------PSKFNAYINEIRQWGEE-SEIVVLAGIEANITP-----NG-VDIT 79 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccc-------hhhHHHHHHHHHHHhhc-cCceEEEeEEeeecC-----Cc-chhH
Confidence 3466799999999999997777653211 11122222 222211 012233333332111 11 2233
Q ss_pred HHHHHHhCCCcccEEEEe-cCCCCCchhHHHHHHHHHHcCcccEEEecC--------ccHHHHHHHHHHHHhcCCCEEEE
Q 023606 152 KDSLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--------YSEKRLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH-~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~--------~~~~~i~~~~~~~~~~~~~~~~~ 222 (280)
+..++ ..|++ +..+| +.+........+.+.++.+.+.+.-+|=-. ...+.++++++.+.+.+..+.+|
T Consensus 80 ~~~~~--~~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiN 156 (215)
T PRK08392 80 DDFAK--KLDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEIS 156 (215)
T ss_pred HHHHh--hCCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEe
Confidence 33444 34555 56678 433223456778888888888776665321 12367788888888888777777
Q ss_pred cccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 023606 223 QVNYSLIYRKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 223 q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
- .+ ..+.. .+++.|++.|+.++.-
T Consensus 157 t-~~----~~p~~-~~l~~~~~~G~~~~ig 180 (215)
T PRK08392 157 S-RY----RVPDL-EFIRECIKRGIKLTFA 180 (215)
T ss_pred C-CC----CCCCH-HHHHHHHHcCCEEEEe
Confidence 4 22 12333 5999999999887543
No 25
>PRK13796 GTPase YqeH; Provisional
Probab=90.48 E-value=4.5 Score=37.86 Aligned_cols=144 Identities=19% Similarity=0.180 Sum_probs=93.9
Q ss_pred cceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCC---CCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCC
Q 023606 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (280)
Q Consensus 49 s~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~G---in~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~ 125 (280)
..+|--|.++-. ++.......++++..++++..-+.- +-.+|..+.-+.. ...+-+.+. .
T Consensus 34 ~~~C~RC~~l~h---y~~~~~~~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~--------~~~L~~~~~------~ 96 (365)
T PRK13796 34 EVYCQRCFRLKH---YNEIQDVSLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGSW--------IPGLHRFVG------N 96 (365)
T ss_pred CeEchhhhhhhc---cCcccCCCCCHHHHHHHHHhhcccCcEEEEEEECccCCCch--------hHHHHHHhC------C
Confidence 567888887643 3333233455667777777776554 4567766544431 223333322 1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHH
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i 205 (280)
+.-++|.+|.-..+.....+.+.+.++...+.+|....|++.+.-......+++++.+.++.+.+.+--+|.+|..-..+
T Consensus 97 kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 97 NPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred CCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 46788999986544344556677677777777887656777776655567788888888887778899999999975555
Q ss_pred HHHH
Q 023606 206 RNAY 209 (280)
Q Consensus 206 ~~~~ 209 (280)
...+
T Consensus 177 iN~L 180 (365)
T PRK13796 177 INRI 180 (365)
T ss_pred HHHH
Confidence 4443
No 26
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=89.92 E-value=14 Score=33.66 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=91.8
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 023606 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (280)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (280)
...+.++..++++.+.+.|++.+.-. | |+..- ..-+-+.++.......-.++.|+|-... +.+
T Consensus 47 ~~ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll----~~~l~~li~~i~~~~~~~~i~itTNG~l---------l~~ 109 (331)
T PRK00164 47 ELLSLEEIERLVRAFVALGVRKVRLT---G-GEPLL----RKDLEDIIAALAALPGIRDLALTTNGYL---------LAR 109 (331)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcC----ccCHHHHHHHHHhcCCCceEEEEcCchh---------HHH
Confidence 34667899999999999999877643 3 33211 1122333333221000246777776521 122
Q ss_pred HHHHHHHHhCCCcccEEEEecCCC---------CCchhHHHHHHHHHHcCc----ccEEEecCccHHHHHHHHHHHHhcC
Q 023606 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRG 216 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~pd~---------~~~~~~~~~L~~lk~~G~----ir~iGvS~~~~~~i~~~~~~~~~~~ 216 (280)
.+ ..|...|++.+- +.+|..+. ...+.++++++.+++.|. |..+-+-+.+.+.+.++++.+...+
T Consensus 110 ~~-~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~g 187 (331)
T PRK00164 110 RA-AALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRG 187 (331)
T ss_pred HH-HHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCC
Confidence 22 334455665543 44454432 235789999999999885 2344444667789999999887766
Q ss_pred CCEEEEcccCCccCCCc--------chhhHHHHHHHcCCeEEEc
Q 023606 217 IPLASNQVNYSLIYRKP--------EENGVKAACDELGITLIAY 252 (280)
Q Consensus 217 ~~~~~~q~~~n~~~~~~--------~~~~l~~~~~~~gi~i~a~ 252 (280)
+.+ .-++|.++.... ...++++..+++++.+...
T Consensus 188 v~v--~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 229 (331)
T PRK00164 188 IQL--RFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQPR 229 (331)
T ss_pred CeE--EEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCccccc
Confidence 543 334444433211 1125778888877655443
No 27
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=89.27 E-value=2.2 Score=36.32 Aligned_cols=150 Identities=12% Similarity=-0.028 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
.+.+.+.++++.+++.|++..|.- ++.+..+++..+..+.++++++.-= ....+.++..+
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i~--------------~~~l~p~m~~iG~~w~~gei~va~~------~~a~~~~~~~l 68 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIELI--------------EKGLMAGMGVVGKLFEDGELFLPHV------MMSADAMLAGI 68 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHHH--------------HHHHHHHHHHHHHHHcCCCccHHHH------HHHHHHHHHHH
Confidence 456899999999999999877643 5566666666553332445543211 12333455555
Q ss_pred HHHHHHhCCC----cccEEEEecCC-CCCchhHHHHHHHHHHcCc-ccEEEecCccHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 152 KDSLFRLGLS----SVELYQLHWAG-IWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 152 ~~sl~~Lg~d----~iDl~~lH~pd-~~~~~~~~~~L~~lk~~G~-ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
+.....+... .---+++-.+. ....-+..-.-.-|+..|+ +.++|... +.+.+.+.++. .+|+++.+.
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~v-p~e~~v~~~~~-----~~pd~v~lS 142 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDV-PIDTVVEKVKK-----EKPLMLTGS 142 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCC-CHHHHHHHHHH-----cCCCEEEEc
Confidence 5554544321 11122222221 1112233334445677787 77888655 56666666554 467777777
Q ss_pred CCccCCCcchhhHHHHHHHcCC
Q 023606 226 YSLIYRKPEENGVKAACDELGI 247 (280)
Q Consensus 226 ~n~~~~~~~~~~l~~~~~~~gi 247 (280)
+++-..-..-.++++.+++.++
T Consensus 143 ~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 143 ALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred cccccCHHHHHHHHHHHHHcCC
Confidence 7655443333468888888854
No 28
>PRK08609 hypothetical protein; Provisional
Probab=88.98 E-value=17 Score=36.29 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=89.6
Q ss_pred HHHHHHHHHHCCCCeEEcccccCCCC-CCCCchhhHHHHHHH---HhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 77 AKAAFDTSLDNGITFFDTAEVYGSRA-SFGAINSETLLGRFI---KERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 77 ~~~~l~~A~~~Gin~~DTA~~Yg~g~-~~~~~~sE~~lG~aL---~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
..++++.|.+.|+..|=.++++.... +++ .+...+-..+ +......+.=+|++..-+.. .++....-.+
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~--~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i-----~~~g~~d~~~ 423 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANG--LTEERLLEQAEEIKALNEKYPEIDILSGIEMDI-----LPDGSLDYDD 423 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCC--CCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEee-----cCCcchhhcH
Confidence 55599999999999999888863210 001 1133332222 22211100113333333322 1222223333
Q ss_pred HHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecC------c--cHHHHHHHHHHHHhcCCCEEEEcc
Q 023606 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------Y--SEKRLRNAYEKLKKRGIPLASNQV 224 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~------~--~~~~i~~~~~~~~~~~~~~~~~q~ 224 (280)
..|+. .||+ +..+|++-..+.+++++.+.++.+.|.+.-||=-. . -...++++++.+...+..+.+|-.
T Consensus 424 ~~L~~--~D~v-I~SvH~~~~~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G~~lEINa~ 500 (570)
T PRK08609 424 EVLAE--LDYV-IAAIHSSFSQSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETNTALELNAN 500 (570)
T ss_pred HHHHh--hCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhCCEEEEcCC
Confidence 34443 5566 67778754445677888999999888877666332 1 135566777776666665666544
Q ss_pred cCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 225 NYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 225 ~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
.+ ..... ..+++.|.+.|+.++.
T Consensus 501 ~~---r~~~~-~~~~~~~~e~Gv~i~i 523 (570)
T PRK08609 501 PN---RLDLS-AEHLKKAQEAGVKLAI 523 (570)
T ss_pred cc---ccCcc-HHHHHHHHHcCCEEEE
Confidence 33 22222 2589999999997654
No 29
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=87.87 E-value=22 Score=32.63 Aligned_cols=133 Identities=15% Similarity=0.150 Sum_probs=79.2
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 023606 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (280)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (280)
...+.++...+++.+.+.|+..|.-+ | |+..-...-.+++ +.+++.+. ..++-|.|-... +.+
T Consensus 43 ~~ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li-~~i~~~~~---l~~i~itTNG~l---------l~~ 105 (329)
T PRK13361 43 QVLSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLV-ARLGKLPG---LEELSLTTNGSR---------LAR 105 (329)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHH-HHHHhCCC---CceEEEEeChhH---------HHH
Confidence 34677899999999999999877643 3 3221000112222 22333220 125666666421 222
Q ss_pred HHHHHHHHhCCCcccEEEEecCCC---------CCchhHHHHHHHHHHcCc--c--cEEEecCccHHHHHHHHHHHHhcC
Q 023606 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL--V--KAVGVSNYSEKRLRNAYEKLKKRG 216 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~pd~---------~~~~~~~~~L~~lk~~G~--i--r~iGvS~~~~~~i~~~~~~~~~~~ 216 (280)
.-+.|...|++++. +.++..++ ...+.+++.++.+++.|. | ..+-+...+.+.+.++++.+...+
T Consensus 106 -~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~g 183 (329)
T PRK13361 106 -FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERG 183 (329)
T ss_pred -HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcC
Confidence 33456667777665 45565543 125689999999999985 2 334445578899999999988777
Q ss_pred CCEEE
Q 023606 217 IPLAS 221 (280)
Q Consensus 217 ~~~~~ 221 (280)
+.+.+
T Consensus 184 i~~~~ 188 (329)
T PRK13361 184 LDIAF 188 (329)
T ss_pred CeEEE
Confidence 65443
No 30
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=87.13 E-value=5.9 Score=33.69 Aligned_cols=149 Identities=15% Similarity=0.015 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
.+++.+.++++.+++.|+...|.- +..+..++++.+..+.++++++.-= ....+.++..+
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~i~--------------~~~l~p~m~~vG~~w~~~~i~va~e------~~as~~~~~~l 67 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQDII--------------EEGLAPGMDIVGDKYEEGEIFVPEL------LMAADAMKAGL 67 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHH--------------HHHHHHHHHHHHHHHccCCeeHHHH------HHHHHHHHHHH
Confidence 456889999999999997655532 3444455554442222333333211 12222233333
Q ss_pred HHHHHHhCCCc---ccEEEEecCC-CCCchhHHHHHHHHHHcCc-ccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccC
Q 023606 152 KDSLFRLGLSS---VELYQLHWAG-IWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (280)
Q Consensus 152 ~~sl~~Lg~d~---iDl~~lH~pd-~~~~~~~~~~L~~lk~~G~-ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (280)
......+.... ---+++-.+. ....-+..-.-.-|+..|+ +.++| .+.+.+.+.+.+.. .+|+++-+.+
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~-----~~~d~v~lS~ 141 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKE-----HKPDILGLSA 141 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHH-----cCCCEEEEec
Confidence 33333332211 1122222221 1111222222334556666 45666 33455555555443 3555555555
Q ss_pred CccCCCcchhhHHHHHHHcC
Q 023606 227 SLIYRKPEENGVKAACDELG 246 (280)
Q Consensus 227 n~~~~~~~~~~l~~~~~~~g 246 (280)
+.-.+-..-..+++.+++.+
T Consensus 142 ~~~~~~~~~~~~i~~lr~~~ 161 (201)
T cd02070 142 LMTTTMGGMKEVIEALKEAG 161 (201)
T ss_pred cccccHHHHHHHHHHHHHCC
Confidence 44333222234666666654
No 31
>PRK05588 histidinol-phosphatase; Provisional
Probab=86.87 E-value=21 Score=31.36 Aligned_cols=165 Identities=10% Similarity=0.142 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCC----CCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRA----SFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~----~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (280)
....+.+++|.+.|+..+ .+++..... .+.. .-+..+ +.++++. ..+|++..-++ +.++ ....
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~-~~~~y~-~~i~~~~----~~~I~~GiE~~-----~~~~-~~~~ 82 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCF-DVDSYF-NKYSKYR----NNKLLLGIELG-----MEKD-LIEE 82 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCcccccc-CHHHHH-HHHHHHh----cCCcceEEEec-----ccCC-CHHH
Confidence 457789999999999988 777642210 0000 001222 2223332 23455444443 2222 3566
Q ss_pred HHHHHHHhCCCcccEEEEecCCCC-----------Cch----hHHHHHHHHHH-cCcccEEE---ec-------C-----
Q 023606 151 LKDSLFRLGLSSVELYQLHWAGIW-----------GNE----GFIDGLGDAVE-QGLVKAVG---VS-------N----- 199 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH~pd~~-----------~~~----~~~~~L~~lk~-~G~ir~iG---vS-------~----- 199 (280)
+++.|++...|++ +..+|+.+.. +.+ ..++.+.++.+ .+++.-+| .- .
T Consensus 83 ~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH~Dl~~r~~~~~~~~~~~ 161 (255)
T PRK05588 83 NKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGHIDYISRYAKYEDKEIYY 161 (255)
T ss_pred HHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccCHhHHHHcCccccccccH
Confidence 6778888787777 7888985421 222 34466777766 45444444 11 0
Q ss_pred -ccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 023606 200 -YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 200 -~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
.-...++++++.+.+.+..+.+|--.+..-........+++.|++.|+.+++.+
T Consensus 162 ~~~~~~~~~il~~~~~~g~~lEINt~~l~~~~~~~~~~~~l~~~~~~g~~~i~lg 216 (255)
T PRK05588 162 DEFKEIIDEILKVLIEKEKVLEINTRRLDDKRSVENLVKIYKRFYELGGKYITLG 216 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECcccCCCCCCCCHHHHHHHHHHcCCcEEEEE
Confidence 113566777888887887777775332211111111247889999998854443
No 32
>PRK07328 histidinol-phosphatase; Provisional
Probab=86.73 E-value=22 Score=31.53 Aligned_cols=167 Identities=15% Similarity=0.216 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCC--------CCCCCchhhHHHHHHHHh---cccCCCCCcEEEEecCCCCCCCCC
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSR--------ASFGAINSETLLGRFIKE---RKQRDPEVEVTVATKFAALPWRLG 143 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g--------~~~~~~~sE~~lG~aL~~---~~~~~~R~~~~I~tK~~~~~~~~~ 143 (280)
....+.++.|.+.|+..+=.+++.... ..+.. +...+-..++. .....++=+|++..-++..
T Consensus 18 ~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~--~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~----- 90 (269)
T PRK07328 18 GTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAM--RLEELPFYVSEVERLRARFPDLYVRLGIEADYH----- 90 (269)
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccc--cHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc-----
Confidence 346779999999999988777664320 00000 01112222221 1110001244444444321
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEecCCC--C------------Cch----hHHHHHHHHHHcCcccEEEecCc-----
Q 023606 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI--W------------GNE----GFIDGLGDAVEQGLVKAVGVSNY----- 200 (280)
Q Consensus 144 ~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~--~------------~~~----~~~~~L~~lk~~G~ir~iGvS~~----- 200 (280)
+ .....+++.|++...|++ +..+|+.+. . +.+ ..++.+.++.+.|.+.-+|=-+.
T Consensus 91 ~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~ 168 (269)
T PRK07328 91 P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFG 168 (269)
T ss_pred C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcC
Confidence 1 234556667777777777 777898542 1 111 23345777788888777763321
Q ss_pred ------cHHHHHHHHHHHHhcCCCEEEEcccC--CccCCCcchhhHHHHHHHcCCeEEE
Q 023606 201 ------SEKRLRNAYEKLKKRGIPLASNQVNY--SLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 201 ------~~~~i~~~~~~~~~~~~~~~~~q~~~--n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
-.+.++++++.+.+.+..+.+|-..+ ..-+..+.. .+++.|++.|+.++.
T Consensus 169 ~~~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~-~il~~~~~~g~~iti 226 (269)
T PRK07328 169 HRPREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSP-ALLRACRERGIPVVL 226 (269)
T ss_pred CCCchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCH-HHHHHHHHcCCCEEE
Confidence 13456788888888887777775432 111222222 599999999998654
No 33
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=86.50 E-value=26 Score=32.07 Aligned_cols=153 Identities=12% Similarity=0.008 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (280)
+++..+.+....+.|++.|=.-- +. .. +...=+++++.. .++-|..=.. ..++.+..+ .+ +
T Consensus 133 ~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~------d~~~v~~vr~~~-----~~~~l~vDaN---~~~~~~~a~-~~-~ 193 (324)
T TIGR01928 133 DEQMLKQIESLKATGYKRIKLKI--TP-QI------MHQLVKLRRLRF-----PQIPLVIDAN---ESYDLQDFP-RL-K 193 (324)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEe--CC-ch------hHHHHHHHHHhC-----CCCcEEEECC---CCCCHHHHH-HH-H
Confidence 35566777778899999774321 11 11 334445565543 1222322221 234454431 12 3
Q ss_pred HHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcc-cEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCC
Q 023606 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~i-r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (280)
.|+. .++.++-.|-. .+-++.+.+|++.-.+ -..|=|-++...+.++++. ..++++|+....+-.-
T Consensus 194 ~l~~-----~~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~dvi~~d~~~~GGi 260 (324)
T TIGR01928 194 ELDR-----YQLLYIEEPFK---IDDLSMLDELAKGTITPICLDESITSLDDARNLIEL-----GNVKVINIKPGRLGGL 260 (324)
T ss_pred HHhh-----CCCcEEECCCC---hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHc-----CCCCEEEeCcchhcCH
Confidence 3333 35555555432 3446788888887655 3667777888888888664 3477777766544322
Q ss_pred cchhhHHHHHHHcCCeEEEcccCcCC
Q 023606 233 PEENGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 233 ~~~~~l~~~~~~~gi~i~a~spl~~G 258 (280)
.+...+.+.|+++|+.++..+.+..|
T Consensus 261 t~~~~~~~~A~~~gi~~~~~~~~es~ 286 (324)
T TIGR01928 261 TEVQKAIETCREHGAKVWIGGMLETG 286 (324)
T ss_pred HHHHHHHHHHHHcCCeEEEcceEccc
Confidence 22236899999999999887666555
No 34
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=85.79 E-value=12 Score=35.09 Aligned_cols=103 Identities=11% Similarity=0.082 Sum_probs=70.3
Q ss_pred EEEEecCCC------------CCchhHHHHHHHHHHc-Cc---ccEEEec--CccHHHHHHHHHHHHhc----CCCEEEE
Q 023606 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKR----GIPLASN 222 (280)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~lk~~-G~---ir~iGvS--~~~~~~i~~~~~~~~~~----~~~~~~~ 222 (280)
.+.||.|+. ++.+++++++.+..++ |+ +-|+=+. |-+.+..+++.+.++.. +++..+|
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 467898875 4577888888887644 32 2333333 44788999988876532 1167899
Q ss_pred cccCCccCCCcc----h---hhHHHHHHHcCCeEEEcccCc------CCCCCCCCCCC
Q 023606 223 QVNYSLIYRKPE----E---NGVKAACDELGITLIAYCPIA------QGSKPRKRNWW 267 (280)
Q Consensus 223 q~~~n~~~~~~~----~---~~l~~~~~~~gi~i~a~spl~------~G~L~~~~~~~ 267 (280)
-++||+...... . ....+.++++||.+......| +|.|..++..+
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~~~~~ 368 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGRHTLP 368 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccccCCCCC
Confidence 999999753221 1 135667789999999998764 58898877654
No 35
>PRK06740 histidinol-phosphatase; Validated
Probab=84.97 E-value=21 Score=32.90 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCCCcccEEEEecCCC--CC----------------chhHHHHHHHHHHcCcccEEEecC------cc---
Q 023606 149 AALKDSLFRLGLSSVELYQLHWAGI--WG----------------NEGFIDGLGDAVEQGLVKAVGVSN------YS--- 201 (280)
Q Consensus 149 ~~l~~sl~~Lg~d~iDl~~lH~pd~--~~----------------~~~~~~~L~~lk~~G~ir~iGvS~------~~--- 201 (280)
..++..|+....||+ +..+|..+. .. .....+.+.++.+.|++..||=-+ +.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f~~~~~~ 234 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVFNYRLDE 234 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhcCCCcch
Confidence 445566666777777 777897542 11 123567788888898887777221 11
Q ss_pred ---HHHHHHHHHHHHhcCCCEEEEcc-cCC--ccCCCcchhhHHHHHHHcCCeEEEc
Q 023606 202 ---EKRLRNAYEKLKKRGIPLASNQV-NYS--LIYRKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 202 ---~~~i~~~~~~~~~~~~~~~~~q~-~~n--~~~~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
.+.++++++.+...+..+.+|-. .+. .-+.-+.. .+++.|++.|+.++.-
T Consensus 235 ~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~-~il~~~~e~Gv~~tlg 290 (331)
T PRK06740 235 NEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSP-LFLQVLAKHEVPITLS 290 (331)
T ss_pred hhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCH-HHHHHHHHCCCeEEEe
Confidence 24777888888888877888764 221 11111222 5899999999987643
No 36
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=84.70 E-value=36 Score=32.16 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCC-CCCcEEEEecCCC--------------
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-PEVEVTVATKFAA-------------- 137 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~-~R~~~~I~tK~~~-------------- 137 (280)
+..++.+.+..|++.|- .+.|++ +.|...|.+.+.+.|.+..... ..+++||++-+..
T Consensus 79 ts~~a~~Av~~al~Sgk-----~N~Yap--s~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~LA~p~a 151 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGK-----GNGYAP--SVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSLANPGA 151 (447)
T ss_pred CCHHHHHHHHHHHhcCC-----CCCcCC--ccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHhcCCCC
Confidence 34678888999999884 345654 2356677888888875443222 5789999987741
Q ss_pred ----CCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEec-------CccHHHHH
Q 023606 138 ----LPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLR 206 (280)
Q Consensus 138 ----~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS-------~~~~~~i~ 206 (280)
+...+.. -.....-..|.+.|.|++ |+ .+-+-=++.++.|.++..+--+=+- -|+.++++
T Consensus 152 NILlPrPGfp~----Y~~~a~~~~lEVR~ydlL----Pe-~~weIDL~~veal~DENT~AivviNP~NPcGnVys~~HL~ 222 (447)
T KOG0259|consen 152 NILLPRPGFPL----YDTRAIYSGLEVRYYDLL----PE-KDWEIDLDGVEALADENTVAIVVINPNNPCGNVYSEDHLK 222 (447)
T ss_pred ceecCCCCCch----HHHhhhhcCceeEeeccc----Cc-ccceechHHHHHhhccCeeEEEEeCCCCCCcccccHHHHH
Confidence 0001111 111122233334444431 11 0112236778888888765443332 25779999
Q ss_pred HHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHH-HcCCeEEEcccCcCCCCCCCCCCCC
Q 023606 207 NAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACD-ELGITLIAYCPIAQGSKPRKRNWWF 268 (280)
Q Consensus 207 ~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~-~~gi~i~a~spl~~G~L~~~~~~~~ 268 (280)
++++.+++.++.+....+.-+....... .++..+ ..-++|++-..+..|.+...++.-|
T Consensus 223 kiae~A~klgi~vIaDEVY~~~vfg~~p---fvpmg~fssiVPVitlggisKrW~VPGWRlGW 282 (447)
T KOG0259|consen 223 KIAETAKKLGIMVIADEVYGHTVFGDKP---FVPMGKFSSIVPVITLGGISKRWIVPGWRLGW 282 (447)
T ss_pred HHHHHHHHhCCeEEehhhcceeecCCCC---ccchhhccccCceEeecccccccccCCceeee
Confidence 9999999888877777776666544332 344443 4567888888888888888886443
No 37
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=83.80 E-value=22 Score=32.92 Aligned_cols=152 Identities=13% Similarity=0.021 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
++..+.+....+.|++.|=.--....... +...=+++++... .++.|..-.. ..++.+.-.+-++.
T Consensus 143 ~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~------d~~~v~air~~~g----~~~~l~vDaN---~~~~~~~A~~~~~~- 208 (355)
T cd03321 143 KLATERAVTAAEEGFHAVKTKIGYPTADE------DLAVVRSIRQAVG----DGVGLMVDYN---QSLTVPEAIERGQA- 208 (355)
T ss_pred HHHHHHHHHHHHhhhHHHhhhcCCCChHh------HHHHHHHHHHhhC----CCCEEEEeCC---CCcCHHHHHHHHHH-
Confidence 45556666677788875532111111111 3333455555431 3555554442 23555433322222
Q ss_pred HHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcc-cEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCc
Q 023606 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~i-r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (280)
|+.+ ++.++..|-. .+-++.+.+|++.--| -..|=+.++...+.++++. -.++++|+..+.+---.
T Consensus 209 l~~~-----~i~~iEeP~~---~~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~-----~~~d~i~~~~~~~GGit 275 (355)
T cd03321 209 LDQE-----GLTWIEEPTL---QHDYEGHARIASALRTPVQMGENWLGPEEMFKALSA-----GACDLVMPDLMKIGGVT 275 (355)
T ss_pred HHcC-----CCCEEECCCC---CcCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHh-----CCCCeEecCHhhhCCHH
Confidence 2333 4455555432 2346777888876443 3556666788888888764 34777777665543222
Q ss_pred chhhHHHHHHHcCCeEEEcc
Q 023606 234 EENGVKAACDELGITLIAYC 253 (280)
Q Consensus 234 ~~~~l~~~~~~~gi~i~a~s 253 (280)
+...+.++|+++|+.++.+.
T Consensus 276 ~~~~ia~~A~~~gi~~~~h~ 295 (355)
T cd03321 276 GWLRASALAEQAGIPMSSHL 295 (355)
T ss_pred HHHHHHHHHHHcCCeecccc
Confidence 22358999999999987664
No 38
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=82.32 E-value=27 Score=32.18 Aligned_cols=122 Identities=13% Similarity=0.072 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEEcccccCC----------------CCCCCCchhhHHHHHHHHhcccCCCCCcEEEEec
Q 023606 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATK 134 (280)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----------------g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK 134 (280)
+.+.+...++.+.|-+.|+-+|-|--.+.. |+. .-..++-...+ . -+.++++|=
T Consensus 86 ~~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~----~~~plik~iA~-~-----~kPiIlSTG 155 (347)
T COG2089 86 ETPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEI----NDLPLIKYIAK-K-----GKPIILSTG 155 (347)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccc----cChHHHHHHHh-c-----CCCEEEEcc
Confidence 455677889999999999998877533321 111 11222222222 1 256777776
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC--c-hhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 023606 135 FAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--N-EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (280)
Q Consensus 135 ~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~--~-~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~ 211 (280)
. .+-+++.++++..+++-. .|+.+||+...+| . +--+..|..|++.= ---||+|.|+...+.-+..+
T Consensus 156 m------a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 156 M------ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred c------ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHH
Confidence 6 356677777776665544 3999999987644 2 22244455554442 46799999998876666665
Q ss_pred H
Q 023606 212 L 212 (280)
Q Consensus 212 ~ 212 (280)
+
T Consensus 226 A 226 (347)
T COG2089 226 A 226 (347)
T ss_pred H
Confidence 4
No 39
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=82.07 E-value=41 Score=30.76 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=77.4
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 023606 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (280)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (280)
..+.++..++++.+.+.|+..|.-+ | |+..-...-.+++.. +++... -+++.|+|-... +.+
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~lt---G-GEPll~~~l~~li~~-i~~~~g---i~~v~itTNG~l---------l~~- 103 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLT---G-GEPLLRKDLVELVAR-LAALPG---IEDIALTTNGLL---------LAR- 103 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE---C-ccccccCCHHHHHHH-HHhcCC---CCeEEEEeCchh---------HHH-
Confidence 4667899999999999998877632 3 322111111223322 332210 136778775421 112
Q ss_pred HHHHHHHhCCCcccEEEEecCCC----------CCchhHHHHHHHHHHcCcc--c--EEEecCccHHHHHHHHHHHHhcC
Q 023606 151 LKDSLFRLGLSSVELYQLHWAGI----------WGNEGFIDGLGDAVEQGLV--K--AVGVSNYSEKRLRNAYEKLKKRG 216 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH~pd~----------~~~~~~~~~L~~lk~~G~i--r--~iGvS~~~~~~i~~~~~~~~~~~ 216 (280)
.-+.|.+.|++++- +.++..++ ...+.+++.++.+++.|.- + .+-+.+.+.+++.++++.+...+
T Consensus 104 ~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~g 182 (334)
T TIGR02666 104 HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERG 182 (334)
T ss_pred HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 23445666765543 33454332 1347899999999999853 2 23334577889999999888777
Q ss_pred CCEEE
Q 023606 217 IPLAS 221 (280)
Q Consensus 217 ~~~~~ 221 (280)
+.+.+
T Consensus 183 v~~~~ 187 (334)
T TIGR02666 183 VTLRF 187 (334)
T ss_pred CeEEE
Confidence 65444
No 40
>PRK07945 hypothetical protein; Provisional
Probab=81.94 E-value=43 Score=30.94 Aligned_cols=162 Identities=12% Similarity=0.068 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCC-CCCCCchhhHHHHHHHHh---cccCCCCC-cEEEEecCCCCCCCCCHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSR-ASFGAINSETLLGRFIKE---RKQRDPEV-EVTVATKFAALPWRLGRQSVLA 149 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g-~~~~~~~sE~~lG~aL~~---~~~~~~R~-~~~I~tK~~~~~~~~~~~~i~~ 149 (280)
....+++++|.+.|+..+=.+++.... ..++ .+...+-..++. ..... ++ +|++..-+...+ +...+
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~--~~~~~l~~y~~~i~~l~~ky-~~I~Il~GiE~d~~~-~g~~~---- 182 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANG--LSAERLRKQLDVVAELNEEL-APFRILTGIEVDILD-DGSLD---- 182 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCC--CCHHHHHHHHHHHHHHHHhc-CCceEEEEeEecccC-CCCcc----
Confidence 457789999999999988877775321 0100 012222222221 11110 12 233333232211 12222
Q ss_pred HHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecC------------ccHHHHHHHHHHHHhcCC
Q 023606 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN------------YSEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~------------~~~~~i~~~~~~~~~~~~ 217 (280)
..++.|+. .||+ +..+|+....+.....+.|.++.+.+.+.-+|=-+ .....++++++.+.+.+.
T Consensus 183 ~~~~~l~~--~D~v-IgSvH~~~~~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g~ 259 (335)
T PRK07945 183 QEPELLDR--LDVV-VASVHSKLRMDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHGT 259 (335)
T ss_pred hhHHHHHh--CCEE-EEEeecCCCCCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhCC
Confidence 22333333 5565 66779865445566778888888888877777321 111224666666777777
Q ss_pred CEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
.+.+|-..+. ..+.. .+++.|++.|+.++.
T Consensus 260 ~lEINt~~~r---~~P~~-~il~~a~e~G~~vti 289 (335)
T PRK07945 260 AVEINSRPER---RDPPT-RLLRLALDAGCLFSI 289 (335)
T ss_pred EEEEeCCCCC---CCChH-HHHHHHHHcCCeEEe
Confidence 7777754332 22332 599999999998754
No 41
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=81.68 E-value=28 Score=30.03 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
.+.++..++++.-.+.|+..|+.....-... ..+.+-+..+... ...+ ++.+ ....+.++..+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~~~~v~~~~~~~~----~~~~--~~~~-----~~~~~~i~~~~ 73 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASED------DFEQVRRLREALP----NARL--QALC-----RANEEDIERAV 73 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHH------HHHHHHHHHHHHH----SSEE--EEEE-----ESCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHH------HHHHhhhhhhhhc----cccc--ceee-----eehHHHHHHHH
Confidence 4568888899998899999999982222211 1444544444443 2233 2322 23445555555
Q ss_pred HHHHHHhCCCcccEEEEecCCC------CC----chhHHHHHHHHHHcCcccEEEec---CccHHHHHHHHHHHHhcCC
Q 023606 152 KDSLFRLGLSSVELYQLHWAGI------WG----NEGFIDGLGDAVEQGLVKAVGVS---NYSEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~------~~----~~~~~~~L~~lk~~G~ir~iGvS---~~~~~~i~~~~~~~~~~~~ 217 (280)
+.. ...|.+.+.++.--++-. .+ .+.+.+.++.+|+.|....+++- .++++.+.++.+.+...+.
T Consensus 74 ~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (237)
T PF00682_consen 74 EAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGA 151 (237)
T ss_dssp HHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-
T ss_pred Hhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCC
Confidence 533 456777777554332200 11 34555666677778877777764 3466777777666655443
No 42
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=81.50 E-value=18 Score=30.04 Aligned_cols=122 Identities=19% Similarity=0.230 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCC--CchhhHHHHHHHHhcccCCCCCcEEEEecCCC---CCCCCCHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFG--AINSETLLGRFIKERKQRDPEVEVTVATKFAA---LPWRLGRQSVLA 149 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~--~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~---~~~~~~~~~i~~ 149 (280)
+++..++-.++..|-..+- .|||.|-. -|-+++++|++-++++.- --+-++|-... ...+++++.+..
T Consensus 28 ~~aa~~i~~~l~~G~Kvl~----cGNGgSaadAqHfaael~gRf~~eR~~l---paIaLt~dsS~lTai~NDy~yd~vFs 100 (176)
T COG0279 28 ERAAQLLVQSLLNGNKVLA----CGNGGSAADAQHFAAELTGRFEKERPSL---PAIALSTDSSVLTAIANDYGYDEVFS 100 (176)
T ss_pred HHHHHHHHHHHHcCCEEEE----ECCCcchhhHHHHHHHHhhHHHhcCCCC---CeeEeecccHHHhhhhccccHHHHHH
Confidence 5677788888999988886 47777742 278899999999887632 35556655443 124677776643
Q ss_pred HHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHH
Q 023606 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~ 209 (280)
+..+.+|. .=|+++==.+.. ....+++++++.|+.| +.-||++.-+-..+..+.
T Consensus 101 ---RqveA~g~-~GDvLigISTSG-NS~nVl~Ai~~Ak~~g-m~vI~ltG~~GG~~~~~~ 154 (176)
T COG0279 101 ---RQVEALGQ-PGDVLIGISTSG-NSKNVLKAIEAAKEKG-MTVIALTGKDGGKLAGLL 154 (176)
T ss_pred ---HHHHhcCC-CCCEEEEEeCCC-CCHHHHHHHHHHHHcC-CEEEEEecCCCccccccc
Confidence 44445553 236666554432 4578999999999998 578999888777776664
No 43
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=80.73 E-value=10 Score=32.71 Aligned_cols=23 Identities=0% Similarity=-0.106 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDT 94 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DT 94 (280)
.+++.+.++++.|++.|+.-.|.
T Consensus 12 ~D~~~~~~~l~~al~~~~~~~~i 34 (213)
T cd02069 12 GIRDGIEEDTEEARQQYARPLEI 34 (213)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 46688999999999999765554
No 44
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.68 E-value=9.7 Score=36.00 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
-....++++|++.|++++||+..... ...+....+ +..+.+..-+|.. ...+--.....+++-
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~~---------~~~~~~~a~-------~Agit~v~~~G~d-PGi~nv~a~~a~~~~ 141 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEEP---------PWKLDEEAK-------KAGITAVLGCGFD-PGITNVLAAYAAKEL 141 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCch---------hhhhhHHHH-------HcCeEEEcccCcC-cchHHHHHHHHHHHh
Confidence 35558999999999999999977764 323333322 3456666666532 233333333333333
Q ss_pred HHHhCCCcccEEEEecCCC
Q 023606 155 LFRLGLSSVELYQLHWAGI 173 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH~pd~ 173 (280)
.. .+++||+|..+-|+.
T Consensus 142 ~~--~i~si~iy~g~~g~~ 158 (389)
T COG1748 142 FD--EIESIDIYVGGLGEH 158 (389)
T ss_pred hc--cccEEEEEEecCCCC
Confidence 33 688999999998876
No 45
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=80.08 E-value=32 Score=32.06 Aligned_cols=143 Identities=20% Similarity=0.189 Sum_probs=90.1
Q ss_pred cceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCC---CCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCC
Q 023606 49 TKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG---ITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDP 125 (280)
Q Consensus 49 s~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~G---in~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~ 125 (280)
..+|--|.++-. ++.......++++..+++....+.- +-.+|..+..+.. ...+-+.+. .
T Consensus 28 ~~~C~RC~~l~h---y~~~~~~~~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~--------~~~l~~~~~------~ 90 (360)
T TIGR03597 28 EVYCQRCFRLKH---YNEIQDVELNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSL--------IPELKRFVG------G 90 (360)
T ss_pred Ceeecchhhhhc---cCccccCCCCHHHHHHHHhhcccCCcEEEEEEECcCCCCCc--------cHHHHHHhC------C
Confidence 568888887643 3333233455667777666665432 3467765554432 122223322 1
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHH
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i 205 (280)
..-++|.+|+-..+...+.+.+.+.+++.++..|....|++.+---.....+++++.|.++++.+.|-.+|.+|..-..+
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 35688999997544445566777777777777886545666665544466888888888887777899999999965444
Q ss_pred HHH
Q 023606 206 RNA 208 (280)
Q Consensus 206 ~~~ 208 (280)
...
T Consensus 171 iN~ 173 (360)
T TIGR03597 171 INK 173 (360)
T ss_pred HHH
Confidence 433
No 46
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.40 E-value=53 Score=30.40 Aligned_cols=158 Identities=13% Similarity=0.125 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCC--CCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRA--SFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~--~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
+...+.+..+.+.|++.|=.--....+. .......+...=+++++... .++-|..=.. ..++.+. ..
T Consensus 125 ~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~D~~~i~avr~~~g----~~~~l~vDaN---~~~~~~~----A~ 193 (352)
T cd03325 125 SDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVG----PDIDIGVDFH---GRVSKPM----AK 193 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCcccCCCHHHHHHHHHHHHHHHHhhC----CCCEEEEECC---CCCCHHH----HH
Confidence 5556667777889999876532111000 00000013334455555331 3444443331 2244432 22
Q ss_pred HHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCC
Q 023606 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (280)
+.++.|. ..++.++-.|-. .+-++.+.+|+++.-+. ..|=|.++.+.+..+++. --++++|+....+--
T Consensus 194 ~~~~~l~--~~~i~~iEeP~~---~~d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~v~~d~~~~GG 263 (352)
T cd03325 194 DLAKELE--PYRLLFIEEPVL---PENVEALAEIAARTTIPIATGERLFSRWDFKELLED-----GAVDIIQPDISHAGG 263 (352)
T ss_pred HHHHhcc--ccCCcEEECCCC---ccCHHHHHHHHHhCCCCEEecccccCHHHHHHHHHh-----CCCCEEecCccccCC
Confidence 3333332 234555555432 23478888898876554 666677788888888654 247777777654432
Q ss_pred CcchhhHHHHHHHcCCeEEEcc
Q 023606 232 KPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 232 ~~~~~~l~~~~~~~gi~i~a~s 253 (280)
-.....+.++|+++||.++.++
T Consensus 264 it~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 264 ITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHHHHHHHHHHcCCcEeccC
Confidence 2222368999999999998776
No 47
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=78.46 E-value=34 Score=33.55 Aligned_cols=140 Identities=16% Similarity=0.096 Sum_probs=77.6
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC--chhHHHHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~--~~~~~~~L~~lk 187 (280)
++.|-++|++.....+.+-++|.+=+ ..+-+-+.++...+.++.+.++++.++.|+... ..+.-.+|+.++
T Consensus 70 ~~~L~~aI~~~~~~~~P~~I~V~sTC-------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~~~al~~lv 142 (511)
T TIGR01278 70 QTRLVDTVRRVDDRFKPDLIVVTPSC-------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAADRTLTQLV 142 (511)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCC-------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHHHHHHHHHH
Confidence 77888888776533223445555444 344455566666666766568899999888622 223333333332
Q ss_pred --------------HcCcccEEEecCc---cHHHHHHHHHHHHhcCCCEEEEcc--------------cCCccCCCcchh
Q 023606 188 --------------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYRKPEEN 236 (280)
Q Consensus 188 --------------~~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~--------------~~n~~~~~~~~~ 236 (280)
+.+.|--||.++. .+..+.++.+..+..|+++.++-. .+|+.-......
T Consensus 143 ~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v~p~g~s~~dl~~l~~A~~NIv~~~~~g~ 222 (511)
T TIGR01278 143 RRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNICPYREIGL 222 (511)
T ss_pred HHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCCHHHHHhcccCcEEEEechHHHH
Confidence 2356888898763 345555565556666666655421 122221110001
Q ss_pred hHHHHH-HHcCCeEEEcccCc
Q 023606 237 GVKAAC-DELGITLIAYCPIA 256 (280)
Q Consensus 237 ~l~~~~-~~~gi~i~a~spl~ 256 (280)
.+-++. ++.|++++...|+|
T Consensus 223 ~~A~~Le~~fGiP~i~~~PiG 243 (511)
T TIGR01278 223 MAAEYLKEKFGQPYITTTPIG 243 (511)
T ss_pred HHHHHHHHHhCCCcccccccC
Confidence 234444 45599998777775
No 48
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=77.05 E-value=62 Score=29.97 Aligned_cols=82 Identities=12% Similarity=-0.015 Sum_probs=52.7
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHH
Q 023606 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (280)
Q Consensus 164 Dl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~ 242 (280)
++.++-.|-+ .+-++.+.+|+++..|. .+|=+-++...+.++++. ..++++|+....+---.+...+..+|
T Consensus 215 ~~~~iEeP~~---~~~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~-----~~~d~~~~d~~~~GGit~~~~~~~~a 286 (365)
T cd03318 215 GVELIEQPVP---RENLDGLARLRSRNRVPIMADESVSGPADAFELARR-----GAADVFSLKIAKSGGLRRAQKVAAIA 286 (365)
T ss_pred CcceeeCCCC---cccHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHh-----CCCCeEEEeecccCCHHHHHHHHHHH
Confidence 4445555432 23478888888876654 666667788888888765 34666666554432222223588999
Q ss_pred HHcCCeEEEcc
Q 023606 243 DELGITLIAYC 253 (280)
Q Consensus 243 ~~~gi~i~a~s 253 (280)
+++|+.++..+
T Consensus 287 ~~~gi~~~~~~ 297 (365)
T cd03318 287 EAAGIALYGGT 297 (365)
T ss_pred HHcCCceeecC
Confidence 99999998653
No 49
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=76.39 E-value=56 Score=30.87 Aligned_cols=152 Identities=11% Similarity=-0.020 Sum_probs=86.5
Q ss_pred hHHHHHHHHHHHHH-CCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 73 ~~~~~~~~l~~A~~-~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
++++..+.++.+++ .|++.|=.-- |.... .-+...=+++++.. .++.|..-.. ..++.+. .
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv--G~~~~----~~di~~v~avRea~-----~~~~l~vDaN---~~w~~~~----A 229 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG--GVLPG----EEEIEAVKALAEAF-----PGARLRLDPN---GAWSLET----A 229 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec--CCCCH----HHHHHHHHHHHHhC-----CCCcEEEeCC---CCcCHHH----H
Confidence 34556666677765 6999775421 21100 00222334454443 1233333332 2344443 3
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccC
Q 023606 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (280)
.+.+++|. - |+.++-.|-. -++.+.+|++...+. ..|-|-++.+.+.++++. ..++++|.....+-
T Consensus 230 ~~~~~~l~--~-~l~~iEeP~~-----d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~-----~avdil~~d~~~~G 296 (395)
T cd03323 230 IRLAKELE--G-VLAYLEDPCG-----GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQL-----NAVDIPLADHHFWG 296 (395)
T ss_pred HHHHHhcC--c-CCCEEECCCC-----CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHc-----CCCcEEeecccccc
Confidence 33334443 2 6666666542 478888888886654 666666777887777664 34777777765443
Q ss_pred CCcchhhHHHHHHHcCCeEEEcccC
Q 023606 231 RKPEENGVKAACDELGITLIAYCPI 255 (280)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~i~a~spl 255 (280)
--.+-..+.+.|+++|+.+..++..
T Consensus 297 Git~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 297 GMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCc
Confidence 2222336899999999999988754
No 50
>PRK14017 galactonate dehydratase; Provisional
Probab=76.38 E-value=68 Score=30.04 Aligned_cols=157 Identities=15% Similarity=0.120 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccc-----cCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEV-----YGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~-----Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (280)
+++..+.+..+.+.|++.|=.--. ++.... ...+...=+++++... .++-|..=.- ..++.+.
T Consensus 125 ~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~~~~~~~---~~~d~~~i~avr~~~g----~~~~l~vDaN---~~w~~~~-- 192 (382)
T PRK14017 125 PADVAEAARARVERGFTAVKMNGTEELQYIDSPRK---VDAAVARVAAVREAVG----PEIGIGVDFH---GRVHKPM-- 192 (382)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCcCCccccccHHH---HHHHHHHHHHHHHHhC----CCCeEEEECC---CCCCHHH--
Confidence 356667778888999998765210 000000 0001222234444321 2444444431 2344443
Q ss_pred HHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCC
Q 023606 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (280)
Q Consensus 149 ~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (280)
..+.++.|. .+++.++-.|-. .+-++.+.+|++...+. ..|=|-++...+..+++. ..++++|+..+
T Consensus 193 --A~~~~~~l~--~~~~~~iEeP~~---~~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~-----~a~d~v~~d~~ 260 (382)
T PRK14017 193 --AKVLAKELE--PYRPMFIEEPVL---PENAEALPEIAAQTSIPIATGERLFSRWDFKRVLEA-----GGVDIIQPDLS 260 (382)
T ss_pred --HHHHHHhhc--ccCCCeEECCCC---cCCHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHc-----CCCCeEecCcc
Confidence 223333332 245555555532 22367888888887664 667777888888888765 34777777765
Q ss_pred ccCCCcchhhHHHHHHHcCCeEEEccc
Q 023606 228 LIYRKPEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~gi~i~a~sp 254 (280)
.+---.....+.+.|+++||.++.++.
T Consensus 261 ~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 261 HAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 543212223689999999999998864
No 51
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=76.35 E-value=17 Score=34.62 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=56.3
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-----CcccEEEEecCCCCC--chh---H
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-----SSVELYQLHWAGIWG--NEG---F 179 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~-----d~iDl~~lH~pd~~~--~~~---~ 179 (280)
|+.|-++|++.....+.+-++|.|=+.. .. +-..++...+++.. .-+.++.++.|+... ..+ +
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~v~~tC~~---~l----iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a 138 (428)
T cd01965 66 EDNLIEALKNLLSRYKPDVIGVLTTCLT---ET----IGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNA 138 (428)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcch---hh----cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHH
Confidence 8888888887654322345666666532 22 33334444444432 246688888887632 223 3
Q ss_pred HHHHHH-H------HHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEE
Q 023606 180 IDGLGD-A------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 180 ~~~L~~-l------k~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~ 222 (280)
+++|-+ + ++.++|--||-++.+...++++.+..+..|+++.++
T Consensus 139 ~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 139 VKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred HHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 333322 1 234568888766653333444444455566665554
No 52
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=76.32 E-value=19 Score=31.47 Aligned_cols=106 Identities=18% Similarity=0.093 Sum_probs=59.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCC-CchhHHHHHHHHHHcC-cccEEEecCccHHHHHHHHHHHHhcCCC
Q 023606 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-GNEGFIDGLGDAVEQG-LVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (280)
Q Consensus 141 ~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~-~~~~~~~~L~~lk~~G-~ir~iGvS~~~~~~i~~~~~~~~~~~~~ 218 (280)
.++.+...+-++. |..+|+++|++-..-.+... -..+.++.++++++.+ .++...++.-..+.++.+.+. +
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~----g-- 87 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA----G-- 87 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC----C--
Confidence 4556555555544 66788888887766543221 2356788888888887 566666665445555555443 2
Q ss_pred EEEEcccCCccC--------CCcc-----hhhHHHHHHHcCCeEEEcc
Q 023606 219 LASNQVNYSLIY--------RKPE-----ENGVKAACDELGITLIAYC 253 (280)
Q Consensus 219 ~~~~q~~~n~~~--------~~~~-----~~~l~~~~~~~gi~i~a~s 253 (280)
++.+++.+..-+ +..+ -...++++++.|+.+...-
T Consensus 88 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 88 VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 333333333221 1110 1145777788887765543
No 53
>PLN02681 proline dehydrogenase
Probab=75.32 E-value=82 Score=30.50 Aligned_cols=170 Identities=13% Similarity=0.104 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHCCCC-eEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 76 AAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 76 ~~~~~l~~A~~~Gin-~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
...++++.|.+.|+. .||.=+.|=.... ..+.-+..+++.....+..|+++--.= -..+.+.+...++.+
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~ai------d~l~~~l~~~yN~~~~~~~V~~T~QaY---Lk~t~~~l~~~l~~a 291 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAI------DYITYDLAREFNKGKDRPIVYGTYQAY---LKDARERLRLDLERS 291 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHH------HHHHHHHHHHhccccCCCcEEEEEeCc---cccCHHHHHHHHHHH
Confidence 366788999999998 7786555443322 444444444443110024466655541 235566677777666
Q ss_pred HHH---hCC-----CcccEE-----EEecCCC-CC-----chhHHHHHHHHHH---cCcccEEEecCccHHHHHHHHHHH
Q 023606 155 LFR---LGL-----SSVELY-----QLHWAGI-WG-----NEGFIDGLGDAVE---QGLVKAVGVSNYSEKRLRNAYEKL 212 (280)
Q Consensus 155 l~~---Lg~-----d~iDl~-----~lH~pd~-~~-----~~~~~~~L~~lk~---~G~ir~iGvS~~~~~~i~~~~~~~ 212 (280)
.+. +|+ -|+|-= .+.||++ .+ ...+-..++.+.+ .+. -++.|.+||.+.+..+.+.+
T Consensus 292 ~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~-~~~~vATHN~~Si~~a~~~~ 370 (455)
T PLN02681 292 EREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGD-GEVMLATHNVESGELAAAKM 370 (455)
T ss_pred HhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCC-eeeEEecCCHHHHHHHHHHH
Confidence 543 121 233321 1123333 11 2223344444444 244 48899999999999999988
Q ss_pred HhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcC
Q 023606 213 KKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (280)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~ 257 (280)
+..++++.-..++|-.+.--.+ ++-....+.|..+.-|.|+|.
T Consensus 371 ~~~gi~~~~~~veF~qL~GM~d--~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 371 NELGLHKGDPRVQFAQLLGMSD--NLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHcCCCCCCCCEEEeccCCCCH--HHHHHHHhcCCCEEEEeeccC
Confidence 7777643322223333322222 355566677999988888874
No 54
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=75.22 E-value=17 Score=30.98 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=94.5
Q ss_pred HHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH------
Q 023606 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK------ 152 (280)
Q Consensus 79 ~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~------ 152 (280)
++|..-++-|-+.+|-..-.| .+-+.|++.. ++.. .| .+.+.+.+.+++.
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------------~LL~~L~~~k------~v~g---~G---vEid~~~v~~cv~rGv~Vi 60 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------------ELLAYLKDEK------QVDG---YG---VEIDPDNVAACVARGVSVI 60 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------------HHHHHHHHhc------CCeE---EE---EecCHHHHHHHHHcCCCEE
Confidence 466777888999999643222 2335555421 1110 01 2456666666554
Q ss_pred -----HHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCC
Q 023606 153 -----DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (280)
Q Consensus 153 -----~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (280)
+.|....-+..|.+.+...-. ....-...|+++..-|+---|+|.||..+..+.-+-. .|-.|..-+.+|+
T Consensus 61 q~Dld~gL~~f~d~sFD~VIlsqtLQ-~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~---~GrmPvt~~lPy~ 136 (193)
T PF07021_consen 61 QGDLDEGLADFPDQSFDYVILSQTLQ-AVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLL---RGRMPVTKALPYE 136 (193)
T ss_pred ECCHHHhHhhCCCCCccEEehHhHHH-hHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHh---cCCCCCCCCCCCc
Confidence 445555555666665543211 1112233456666678877899999987777655432 2335777888888
Q ss_pred ccCCCcch----hhHHHHHHHcCCeEEEcccCcCCCC
Q 023606 228 LIYRKPEE----NGVKAACDELGITLIAYCPIAQGSK 260 (280)
Q Consensus 228 ~~~~~~~~----~~l~~~~~~~gi~i~a~spl~~G~L 260 (280)
.++...-. .+..++|++.||.|+-..++..+.-
T Consensus 137 WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~~ 173 (193)
T PF07021_consen 137 WYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGRR 173 (193)
T ss_pred ccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCCC
Confidence 87755432 2678899999999999999988773
No 55
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=75.20 E-value=68 Score=29.50 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCC-CCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASF-GAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~-~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
+.++..+.++.+++.|++.|=.--..+..... ......+.+ +++++... .++-|..=.. ..++.+.-.
T Consensus 120 ~~~~~~~~a~~~~~~Gf~~~Kikvg~~~~~~~~~~~~d~~~v-~avr~~~g----~~~~l~vDan---~~~~~~~A~--- 188 (341)
T cd03327 120 DLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELV-RAIREAVG----YDVDLMLDCY---MSWNLNYAI--- 188 (341)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCcchHHHHHHHHHH-HHHHHHhC----CCCcEEEECC---CCCCHHHHH---
Confidence 34556677788889999977542111110000 000012223 44443321 2333333321 234444322
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccC
Q 023606 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (280)
+.+++|. ..|+.++-.|-+ .+-++.+.+|+++..|. ..|=+-++...++++++. ..++++|+..+.+-
T Consensus 189 -~~~~~l~--~~~~~~iEeP~~---~~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~-----~a~d~i~~d~~~~G 257 (341)
T cd03327 189 -KMARALE--KYELRWIEEPLI---PDDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEG-----RAVDILQPDVNWVG 257 (341)
T ss_pred -HHHHHhh--hcCCccccCCCC---ccCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHc-----CCCCEEecCccccC
Confidence 2223332 235555555432 33477788888886665 666677788888888664 34777777765543
Q ss_pred CCcchhhHHHHHHHcCCeEEEcc
Q 023606 231 RKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
--.+...+.+.|+++|+.++.++
T Consensus 258 Git~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 258 GITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHHHHHHcCCeecccc
Confidence 22233368999999999988773
No 56
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=74.58 E-value=69 Score=29.30 Aligned_cols=136 Identities=18% Similarity=0.062 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHHHHC-CCCeEE-cccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDN-GITFFD-TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~-Gin~~D-TA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (280)
.+.++..++++..-+. |++-+- |. |+..- .+.+.+-+.++..........+-|.|+... ..+..+..
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG-----GDPl~--~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v----~~p~rit~ 187 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG-----GDPLV--LSPRRLGDIMARLAAIDHVKIVRFHTRVPV----ADPARVTP 187 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC-----CCccc--CCHHHHHHHHHHHHhCCCccEEEEeCCCcc----cChhhcCH
Confidence 4557777888776654 887443 22 21100 112334444433321101245677887632 22333444
Q ss_pred HHHHHHHHhCCCcccEEEEecCCC-CCchhHHHHHHHHHHcCcccEE------EecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 150 ALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAV------GVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~L~~lk~~G~ir~i------GvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
.+-+.|++.|.. ..+.+|.... .-.++++++++.|++.|..-.+ |+ |.+.+.+.++.+.+...++.+-+
T Consensus 188 ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~~~l~~~gv~pyy 263 (321)
T TIGR03822 188 ALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALMRAFVECRIKPYY 263 (321)
T ss_pred HHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHHHHHHhcCCeeEE
Confidence 444566666742 3577787544 2258899999999999962211 33 46788899998887777765444
No 57
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=74.14 E-value=75 Score=29.50 Aligned_cols=146 Identities=12% Similarity=0.002 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (280)
.++..+.+..+.+.|++.|=.-- .+. =+++++... .++.|..-.. ..++.+.- .+
T Consensus 127 ~~~~~~~a~~~~~~Gf~~~KiKv-------------~~~-v~avre~~G----~~~~l~vDaN---~~w~~~~A----~~ 181 (361)
T cd03322 127 IPELLEAVERHLAQGYRAIRVQL-------------PKL-FEAVREKFG----FEFHLLHDVH---HRLTPNQA----AR 181 (361)
T ss_pred HHHHHHHHHHHHHcCCCeEeeCH-------------HHH-HHHHHhccC----CCceEEEECC---CCCCHHHH----HH
Confidence 35566677777889998765310 122 244444321 3444444331 23454432 22
Q ss_pred HHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCC
Q 023606 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (280)
.++.|. .+++.++-.|-+ .+-++.+.+|++...+. ..|=|-++...+.++++. ..++++|+....+---
T Consensus 182 ~~~~l~--~~~l~~iEeP~~---~~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~-----~a~di~~~d~~~~GGi 251 (361)
T cd03322 182 FGKDVE--PYRLFWMEDPTP---AENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQE-----RLIDYIRTTVSHAGGI 251 (361)
T ss_pred HHHHhh--hcCCCEEECCCC---cccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHh-----CCCCEEecCccccCCH
Confidence 223332 346666666542 23478888898887664 777777888998888765 3477777776554322
Q ss_pred cchhhHHHHHHHcCCeEEEccc
Q 023606 233 PEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 233 ~~~~~l~~~~~~~gi~i~a~sp 254 (280)
.+...+.+.|+++|+.++.++.
T Consensus 252 t~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 252 TPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred HHHHHHHHHHHHcCCeeeccCC
Confidence 2233689999999999987653
No 58
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=73.33 E-value=87 Score=29.86 Aligned_cols=152 Identities=11% Similarity=0.038 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (280)
+++..+..+.+++.|++.|=.--.-.. .. +...=+++++... .++-|..-.. ..++.+.-.+
T Consensus 197 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~-~~------d~~~v~avRe~vG----~~~~L~vDaN---~~w~~~~A~~---- 258 (415)
T cd03324 197 DEKLRRLCKEALAQGFTHFKLKVGADL-ED------DIRRCRLAREVIG----PDNKLMIDAN---QRWDVPEAIE---- 258 (415)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCH-HH------HHHHHHHHHHhcC----CCCeEEEECC---CCCCHHHHHH----
Confidence 355666677777889987653210011 00 1222344544321 3333333331 2345443222
Q ss_pred HHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcC----cccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCcc
Q 023606 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG----LVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G----~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~ 229 (280)
.+++|. ..++.++-.|-. .+-++.+.+|++.- .=-..|=|-++...+.++++. ...+++|....-+
T Consensus 259 ~~~~L~--~~~l~~iEEP~~---~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~-----~a~dil~~d~~~~ 328 (415)
T cd03324 259 WVKQLA--EFKPWWIEEPTS---PDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQA-----GAIDVVQIDSCRL 328 (415)
T ss_pred HHHHhh--ccCCCEEECCCC---CCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHc-----CCCCEEEeCcccc
Confidence 223332 345556665532 33466777777663 333456566788888888664 3577777776554
Q ss_pred CCCcchhhHHHHHHHcCCeEEEcc
Q 023606 230 YRKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
---.+...+.+.|+++|+.+..++
T Consensus 329 GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 329 GGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEcC
Confidence 322233368999999999998874
No 59
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=72.78 E-value=50 Score=30.69 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=90.7
Q ss_pred ccCCCCCCCCchhhHHHHHHHHhcccC--CCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCcccEEEEecCCC
Q 023606 97 VYGSRASFGAINSETLLGRFIKERKQR--DPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGI 173 (280)
Q Consensus 97 ~Yg~g~~~~~~~sE~~lG~aL~~~~~~--~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg-~d~iDl~~lH~pd~ 173 (280)
..|.|+...+ -..+-++++..... .....+.|+| +|. .+.+++-.+..+++++ .+....+.||.++.
T Consensus 154 fmGmGEPlln---~~~v~~~i~~l~~~~~i~~r~itvST-~G~------~~~i~~L~~~~~~~~~~~~~~laiSLha~~~ 223 (345)
T PRK14457 154 FMGMGEPLLN---IDEVLAAIRCLNQDLGIGQRRITVST-VGV------PKTIPQLAELAFQRLGRLQFTLAVSLHAPNQ 223 (345)
T ss_pred EEecCccccC---HHHHHHHHHHHhcccCCccCceEEEC-CCc------hhhHHHHHhhhhhhcccCceEEEEEeCCCCH
Confidence 4455544222 24455666654210 0123566666 331 1223333333334443 34557889998875
Q ss_pred ------------CCchhHHHHHHH-HHHcCc---ccEEEecCc--cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCc--
Q 023606 174 ------------WGNEGFIDGLGD-AVEQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP-- 233 (280)
Q Consensus 174 ------------~~~~~~~~~L~~-lk~~G~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~-- 233 (280)
++.+++++++.+ +.+.|+ |+++=+.++ +.+.++++.+.+.. ++..++-++||++....
T Consensus 224 e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~iey~LIpGvNDs~e~a~~La~~l~~--l~~~VnLIPynp~~~~~~~ 301 (345)
T PRK14457 224 KLRETLIPSAKNYPIENLLEDCRHYVAITGRRVSFEYILLGGVNDLPEHAEELANLLRG--FQSHVNLIPYNPIDEVEFQ 301 (345)
T ss_pred HHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCcCCCHHHHHHHHHHHhc--CCCeEEEecCCCCCCCCCC
Confidence 235567777755 455563 566666654 67888888888653 35678889999875322
Q ss_pred --chh---hHHHHHHHcCCeEEEcccCc------CCCCCCCCC
Q 023606 234 --EEN---GVKAACDELGITLIAYCPIA------QGSKPRKRN 265 (280)
Q Consensus 234 --~~~---~l~~~~~~~gi~i~a~spl~------~G~L~~~~~ 265 (280)
... .+.+.++++|+.+......| +|.|..+++
T Consensus 302 ~ps~e~i~~f~~~L~~~Gi~vtvR~~~G~di~aaCGqL~~~~~ 344 (345)
T PRK14457 302 RPSPKRIQAFQRVLEQRGVAVSVRASRGLDANAACGQLRRNAR 344 (345)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEeCCCCCchhhccccchhccc
Confidence 221 35666778899999887765 477766543
No 60
>TIGR03586 PseI pseudaminic acid synthase.
Probab=72.31 E-value=79 Score=29.18 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCC-------------------CCCcEEEE
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-------------------PEVEVTVA 132 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~-------------------~R~~~~I~ 132 (280)
.+.+...++.+++-+.|+.|+-|.-.-. -+ +.|.++.... ....++|+
T Consensus 74 l~~e~~~~L~~~~~~~Gi~~~stpfd~~------------sv-d~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvils 140 (327)
T TIGR03586 74 TPWEWHKELFERAKELGLTIFSSPFDET------------AV-DFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMS 140 (327)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEccCCHH------------HH-HHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEE
Confidence 4557778899999999999988753221 11 2222221100 11344444
Q ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC---chhHHHHHHHHHHcCcccEEEecCccHHHHHHHH
Q 023606 133 TKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (280)
Q Consensus 133 tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~---~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~ 209 (280)
|=. .+.+.+..+++...+. |. -|+.++|+...++ .+-=+.++..|++.=. .-||+|+|+.....-++
T Consensus 141 tG~------~t~~Ei~~Av~~i~~~-g~--~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt~G~~~~~a 210 (327)
T TIGR03586 141 TGI------ATLEEIQEAVEACREA-GC--KDLVLLKCTSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHTLGILAPVA 210 (327)
T ss_pred CCC------CCHHHHHHHHHHHHHC-CC--CcEEEEecCCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCCCchHHHHH
Confidence 433 4677888888777543 32 4799999876543 2233566666666543 57999999876544444
Q ss_pred HHHHhcCCCEEEEcccCCc
Q 023606 210 EKLKKRGIPLASNQVNYSL 228 (280)
Q Consensus 210 ~~~~~~~~~~~~~q~~~n~ 228 (280)
.++. | -.++.-++++
T Consensus 211 Ava~--G--A~iIEkH~tl 225 (327)
T TIGR03586 211 AVAL--G--ACVIEKHFTL 225 (327)
T ss_pred HHHc--C--CCEEEeCCCh
Confidence 4432 2 2366666655
No 61
>PRK05985 cytosine deaminase; Provisional
Probab=71.67 E-value=87 Score=29.17 Aligned_cols=169 Identities=11% Similarity=0.043 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
..+...++.++..|++++-+-..+..+..+ .+-+.+-++.+... .+-.+-++..... ...+.......+++.
T Consensus 98 ~~a~~~~~~~l~~G~t~vr~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~v~~~~~--g~~~~~~~~~ll~~~ 169 (391)
T PRK05985 98 ERALALARAAAAAGTTAMRSHVDVDPDAGL---RHLEAVLAARETLR---GLIDIQIVAFPQS--GVLSRPGTAELLDAA 169 (391)
T ss_pred HHHHHHHHHHHhcCcceEEeeEccCCCccc---chHHHHHHHHHHhh---CcccEEEEeccCc--cccCCcCHHHHHHHH
Confidence 446677999999999987332112211110 00222333333332 1233334433211 112221123445555
Q ss_pred HHHhCCCcccEEEE---ecCCCCCchhHHHHHHHHHHcCcccEEEecCc---cHHHHHHHHHHHHhcCCC--EEEEcccC
Q 023606 155 LFRLGLSSVELYQL---HWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIP--LASNQVNY 226 (280)
Q Consensus 155 l~~Lg~d~iDl~~l---H~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~--~~~~q~~~ 226 (280)
++. |. |+... |.++....+.+-+.++.+++.|+.-++=+... ....+.++++.....+.. ..+...
T Consensus 170 l~~-g~---~~~gg~~p~~~~~~~~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~~~~~~~~~e~~~~~g~~~~~~i~H~-- 243 (391)
T PRK05985 170 LRA-GA---DVVGGLDPAGIDGDPEGQLDIVFGLAERHGVGIDIHLHEPGELGAFQLERIAARTRALGMQGRVAVSHA-- 243 (391)
T ss_pred HHc-CC---CEEeCCCCCCcCCCHHHHHHHHHHHHHHhCCCcEEeeCCCCCccHHHHHHHHHHHHHhCCCCCEehhhh--
Confidence 543 32 32222 22222223444455566677787654444332 224555555554444432 222222
Q ss_pred CccCC-Ccc-hhhHHHHHHHcCCeEEEcccCcC
Q 023606 227 SLIYR-KPE-ENGVKAACDELGITLIAYCPIAQ 257 (280)
Q Consensus 227 n~~~~-~~~-~~~l~~~~~~~gi~i~a~spl~~ 257 (280)
..+.. ..+ ...+++.+++.|+.++.-.|+..
T Consensus 244 ~~l~~~~~~~~~~~i~~lae~g~~v~~~~~~~~ 276 (391)
T PRK05985 244 FCLGDLPEREVDRLAERLAEAGVAIMTNAPGSV 276 (391)
T ss_pred hhhhcCCHHHHHHHHHHHHHcCCeEEEeCCCCC
Confidence 11111 111 12468888889998865544433
No 62
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=71.07 E-value=52 Score=31.57 Aligned_cols=111 Identities=21% Similarity=0.240 Sum_probs=62.4
Q ss_pred ccccCCCCCCCCchhhHHHHHHHHhcccCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC
Q 023606 95 AEVYGSRASFGAINSETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (280)
Q Consensus 95 A~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~ 173 (280)
.-.||. |+.|-++|++.....++ +-++|.+=+.. ..-.+.+..-+++.-++++ +.++.+|.|+.
T Consensus 96 d~V~Gg---------~~~L~~aI~~~~~~~~p~~~I~V~~tC~~---~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf 160 (443)
T TIGR01862 96 DIVFGG---------EKKLKKLIHEAFTEFPLIKAISVYATCPT---GLIGDDIEAVAKEVSKEIG---KDVVAVNCPGF 160 (443)
T ss_pred ceeeCc---------HHHHHHHHHHHHHhCCccceEEEECCChH---HHhccCHHHHHHHHHHhcC---CCEEEEecCCc
Confidence 346786 88888888876654333 55666666532 2333444444444444444 68999999887
Q ss_pred CC---chhHHHH----HHHHH--------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 174 WG---NEGFIDG----LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 174 ~~---~~~~~~~----L~~lk--------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
.. ..+...+ ++++. +.+.|--||-.++ +..++++.+..+..|+++.+
T Consensus 161 ~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~-~~d~~el~~lL~~~Gl~v~~ 222 (443)
T TIGR01862 161 AGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIGEYNI-GGDAWVMRIYLEEMGIQVVA 222 (443)
T ss_pred cCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEccCcC-cccHHHHHHHHHHcCCeEEE
Confidence 32 1233322 33443 2467888885554 23334444445556666544
No 63
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=70.01 E-value=82 Score=28.20 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 023606 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (280)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (280)
..+.++..++++.+.+.|+..+.- .| |+..-...-.+++ +.+++.+ -.++.|.|-.. +...
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~---tG-GEPll~~~l~~iv-~~l~~~g----~~~v~i~TNG~----------ll~~ 99 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKI---TG-GEPLLRKDLIEII-RRIKDYG----IKDVSMTTNGI----------LLEK 99 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEE---EC-cccccccCHHHHH-HHHHhCC----CceEEEEcCch----------HHHH
Confidence 356788889999999999987763 23 4321111112222 2233332 13677777641 1122
Q ss_pred HHHHHHHhCCCcccEEEEecCCC---------CCchhHHHHHHHHHHcCcc----cEEEecCccHHHHHHHHHHHHhcCC
Q 023606 151 LKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLV----KAVGVSNYSEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH~pd~---------~~~~~~~~~L~~lk~~G~i----r~iGvS~~~~~~i~~~~~~~~~~~~ 217 (280)
.-..|.+.|++.|. +.++..++ ...+.+++.++.+++.|.- ..+.+.+.+.+.+.++++.+...++
T Consensus 100 ~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~ 178 (302)
T TIGR02668 100 LAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGA 178 (302)
T ss_pred HHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 33345666766544 34455432 1356889999999999842 2344555788889999998877665
Q ss_pred CE
Q 023606 218 PL 219 (280)
Q Consensus 218 ~~ 219 (280)
.+
T Consensus 179 ~~ 180 (302)
T TIGR02668 179 IL 180 (302)
T ss_pred EE
Confidence 43
No 64
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=69.69 E-value=26 Score=30.17 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=55.9
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHH
Q 023606 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (280)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (280)
.++.++-.|-+ . +-++.+.+|++...+. ..+=|-++.+.+.++++. ..++++|+..+.+-.-.+...+.++
T Consensus 120 ~~i~~iEeP~~--~-~d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~-----~~~d~~~~k~~~~GGi~~~~~i~~~ 191 (229)
T cd00308 120 YGLAWIEEPCA--P-DDLEGYAALRRRTGIPIAADESVTTVDDALEALEL-----GAVDILQIKPTRVGGLTESRRAADL 191 (229)
T ss_pred cCCCeEECCCC--c-cCHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHc-----CCCCEEecCccccCCHHHHHHHHHH
Confidence 45566665532 2 2367778888877664 344555567777666543 3467777766554322222358899
Q ss_pred HHHcCCeEEEcccCcCC
Q 023606 242 CDELGITLIAYCPIAQG 258 (280)
Q Consensus 242 ~~~~gi~i~a~spl~~G 258 (280)
|+++|+.++..+.+..|
T Consensus 192 a~~~gi~~~~~~~~~s~ 208 (229)
T cd00308 192 AEAFGIRVMVHGTLESS 208 (229)
T ss_pred HHHcCCEEeecCCCCCH
Confidence 99999999999876554
No 65
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=69.58 E-value=88 Score=28.36 Aligned_cols=187 Identities=12% Similarity=0.102 Sum_probs=95.4
Q ss_pred ceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHH-CCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCc
Q 023606 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVE 128 (280)
Q Consensus 50 ~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~-~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~ 128 (280)
.|.+|.+.-... . ....+.++..+.+...++ .|.+.+|--..|+.-.. ..+-..+-++|+.+... +..
T Consensus 71 iiS~GG~~g~~~---~---~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d---~~~~~~~~~al~~Lq~~--~p~ 139 (294)
T cd06543 71 IVSFGGASGTPL---A---TSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTD---TAAIDRRAQALALLQKE--YPD 139 (294)
T ss_pred EEEecCCCCCcc---c---cCcccHHHHHHHHHHHHHHhCCCeEEEeccCCcccc---chhHHHHHHHHHHHHHH--CCC
Confidence 357777753221 1 122344555555555665 49999998766654111 01136677888776543 235
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCcccEEEEecCCCC---C-chhHHHHHHHHHHcCcccEEEecCccH
Q 023606 129 VTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGIW---G-NEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (280)
Q Consensus 129 ~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg--~d~iDl~~lH~pd~~---~-~~~~~~~L~~lk~~G~ir~iGvS~~~~ 202 (280)
+.|+--++..+...+.+.+ + +-+..+..| +|+|.++-+..-... + -..+..+.+.++.+=+--+=+ ++.
T Consensus 140 l~vs~Tlp~~p~gl~~~g~-~-~l~~a~~~Gv~~d~VNiMtmDyg~~~~~~~mg~~a~~aa~~~~~ql~~~~~~---~s~ 214 (294)
T cd06543 140 LKISFTLPVLPTGLTPDGL-N-VLEAAAANGVDLDTVNIMTMDYGSSAGSQDMGAAAISAAESLHDQLKDLYPK---LSD 214 (294)
T ss_pred cEEEEecCCCCCCCChhHH-H-HHHHHHHcCCCcceeeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHccC---CCH
Confidence 6666555443344544332 2 333334444 466676666543321 2 245566666666552222212 222
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCC--ccCCCcchhhHHHHHHHcCCeEEEcccCcCCC
Q 023606 203 KRLRNAYEKLKKRGIPLASNQVNYS--LIYRKPEENGVKAACDELGITLIAYCPIAQGS 259 (280)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n--~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~ 259 (280)
.++-..+ ++.|.+=++... ++..... ..+.+|++++||+.+.+..+.+-.
T Consensus 215 ~~~~~~i------g~TpMiG~nD~~~e~ft~~da-~~~~~fA~~~~l~~~s~Ws~~RD~ 266 (294)
T cd06543 215 AELWAMI------GVTPMIGVNDVGSEVFTLADA-QTLVDFAKEKGLGRLSMWSLNRDR 266 (294)
T ss_pred HHHHHHc------cccccccccCCCCceeeHHHH-HHHHHHHHhCCCCeEeeeeccCCC
Confidence 2222221 233433222211 1221111 269999999999999998887644
No 66
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=68.78 E-value=31 Score=32.94 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=52.8
Q ss_pred cEEEEecCCCCCchhHHHHHHHHHHcCc-ccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHH
Q 023606 164 ELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (280)
Q Consensus 164 Dl~~lH~pd~~~~~~~~~~L~~lk~~G~-ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~ 242 (280)
.++++|. ...-+....+.|+++|. ++++.+.+-....++++.+..+...--+.+..+...+....+.+ ++...|
T Consensus 133 ~iitl~~----eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~-EI~~ic 207 (428)
T KOG1549|consen 133 HIITLQT----EHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVK-EIVKIC 207 (428)
T ss_pred eEEEecc----cCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHH-HHHHHh
Confidence 4556653 22457777888888886 68888886544455555444332221133333444344344444 588899
Q ss_pred HHcCCeEEEcccCcCCC
Q 023606 243 DELGITLIAYCPIAQGS 259 (280)
Q Consensus 243 ~~~gi~i~a~spl~~G~ 259 (280)
++.+|.+++=..-+-|.
T Consensus 208 r~~~v~v~~DaAQavG~ 224 (428)
T KOG1549|consen 208 REEGVQVHVDAAQAVGK 224 (428)
T ss_pred CcCCcEEEeehhhhcCC
Confidence 99988777655554444
No 67
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=68.63 E-value=1e+02 Score=28.66 Aligned_cols=84 Identities=10% Similarity=-0.081 Sum_probs=54.4
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHH
Q 023606 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (280)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (280)
.++.++-.|-. .+-++.+.+|++...+. ..|=|-++...+.++++. ..++++|+....+---.+...+...
T Consensus 213 ~~~~~iEeP~~---~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~-----~~~d~~~~d~~~~GGi~~~~~i~~l 284 (368)
T TIGR02534 213 AGVELIEQPTP---AENREALARLTRRFNVPIMADESVTGPADALAIAKA-----SAADVFALKTTKSGGLLESKKIAAI 284 (368)
T ss_pred cChhheECCCC---cccHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHh-----CCCCEEEEcccccCCHHHHHHHHHH
Confidence 34555555532 23377777888876654 677777888888888664 3466777665543321222358889
Q ss_pred HHHcCCeEEEccc
Q 023606 242 CDELGITLIAYCP 254 (280)
Q Consensus 242 ~~~~gi~i~a~sp 254 (280)
|+++|+.++..+.
T Consensus 285 A~~~gi~~~~~~~ 297 (368)
T TIGR02534 285 AEAAGIALYGGTM 297 (368)
T ss_pred HHHcCCceeeecc
Confidence 9999999987643
No 68
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=68.38 E-value=85 Score=27.81 Aligned_cols=108 Identities=14% Similarity=0.067 Sum_probs=58.2
Q ss_pred HHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCC-------CCCHHHHHHHH
Q 023606 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW-------RLGRQSVLAAL 151 (280)
Q Consensus 79 ~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~-------~~~~~~i~~~l 151 (280)
+++++|++.|...|..-..-.. ...+-..++++. -.+++...-+.+.. ..-.+.+.+.+
T Consensus 87 ~v~e~al~~G~~iINdisg~~~---------~~~~~~l~~~~~-----~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~ 152 (257)
T cd00739 87 EVARAALEAGADIINDVSGGSD---------DPAMLEVAAEYG-----APLVLMHMRGTPKTMQENPYYEDVVDEVLSFL 152 (257)
T ss_pred HHHHHHHHhCCCEEEeCCCCCC---------ChHHHHHHHHcC-----CCEEEECCCCCCcccccCCCcccHHHHHHHHH
Confidence 4677888889888875433221 134556677764 45666544332110 01123344444
Q ss_pred HHH---HHHhCCC----cccEEEEecCCC-CCchhHHHHHHHHHHcCcccEEEecCcc
Q 023606 152 KDS---LFRLGLS----SVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (280)
Q Consensus 152 ~~s---l~~Lg~d----~iDl~~lH~pd~-~~~~~~~~~L~~lk~~G~ir~iGvS~~~ 201 (280)
++. +++.|++ ++|-..- .... ...-++++.++++++.|.=-.+|+|+-+
T Consensus 153 ~~~i~~~~~~Gi~~~~Ii~DPg~g-f~ks~~~~~~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 153 EARLEAAESAGVARNRIILDPGIG-FGKTPEHNLELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHcCCCHHHEEEecCCC-cccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 433 4455776 4443110 0000 1134668888888888877799999853
No 69
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=68.17 E-value=13 Score=33.38 Aligned_cols=93 Identities=22% Similarity=0.261 Sum_probs=60.1
Q ss_pred HHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecC---ccHHHHHHHHHHHHhcCCCEEEEcccCCccC
Q 023606 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~---~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (280)
++++...+..|++.+..|--. -..++.+ ++...+ .|=|+. +....++++++..++.+++..++-+.||+-+
T Consensus 155 ~~kk~a~E~~~~~IIDsaaG~-gCpVi~s---l~~aD~--ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g~ 228 (284)
T COG1149 155 ALKKHAKELADLLIIDSAAGT-GCPVIAS---LKGADL--AILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLGD 228 (284)
T ss_pred HHHHhhhhhcceeEEecCCCC-CChHHHh---hccCCE--EEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCCc
Confidence 344444444788888876421 1223333 333333 333332 2346677777777888899999999996655
Q ss_pred CCcchhhHHHHHHHcCCeEEEcccCcC
Q 023606 231 RKPEENGVKAACDELGITLIAYCPIAQ 257 (280)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~i~a~spl~~ 257 (280)
. ++.++|++.|+++++--|+..
T Consensus 229 s-----~ie~~~~e~gi~il~~IPyd~ 250 (284)
T COG1149 229 S-----EIEEYCEEEGIPILGEIPYDK 250 (284)
T ss_pred h-----HHHHHHHHcCCCeeEECCcch
Confidence 3 488999999999999988764
No 70
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=67.58 E-value=73 Score=31.30 Aligned_cols=140 Identities=11% Similarity=0.129 Sum_probs=71.3
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CcccEEEEecCCCCC--chhHHHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWAGIWG--NEGFIDGLGDA 186 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~-d~iDl~~lH~pd~~~--~~~~~~~L~~l 186 (280)
++.+-++|++.....+.+-++|.|=+. ++-|-++++...+.++. .-++++.+|.|.... ....-.+++.+
T Consensus 70 ~~kL~~~I~~~~~~~~P~~I~V~tTC~-------~eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~~g~~~~l~~l 142 (513)
T CHL00076 70 QEKVVDNITRKDKEERPDLIVLTPTCT-------SSILQEDLQNFVDRASIESDSDVILADVNHYRVNELQAADRTLEQI 142 (513)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCc-------hhhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHHHHHHHHHHHH
Confidence 667777777553322234455555442 33333444444443331 236899999997632 11222233333
Q ss_pred H------------------HcCcccEEEecCc---cHHHHHHHHHHHHhcCCCEEEEcc--------------cCCccCC
Q 023606 187 V------------------EQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYR 231 (280)
Q Consensus 187 k------------------~~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~--------------~~n~~~~ 231 (280)
. ..++|--||.++. ++..+.++.+..+..|+++.++-. .+|+.-.
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A~~NIvl~ 222 (513)
T CHL00076 143 VRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKAWFNIVPY 222 (513)
T ss_pred HHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccCcEEEEec
Confidence 2 2356888987742 334455555555556666553322 2333221
Q ss_pred CcchhhHHHHHH-HcCCeEEEcccCc
Q 023606 232 KPEENGVKAACD-ELGITLIAYCPIA 256 (280)
Q Consensus 232 ~~~~~~l~~~~~-~~gi~i~a~spl~ 256 (280)
......+-++.+ +.|++.+...|+|
T Consensus 223 ~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 223 REVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred hhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 111113455554 5699998877765
No 71
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=67.36 E-value=90 Score=27.64 Aligned_cols=106 Identities=9% Similarity=-0.110 Sum_probs=72.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCC
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~ 217 (280)
.-++.++-.+-.+-..+.+++++|-|=.+.++.. .++.+.+++.++|.++|.+ -+=+|+-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd~~~ar~l~~~------ 143 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFT-VLPYCTDDPVLAKRLEDA------ 143 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHc------
Confidence 3577777777778888889999999988888776 5688999999999999964 344566677777777654
Q ss_pred CEEEEcccCCccCCCcc--hhhHHHHHHH-cCCeEEEc
Q 023606 218 PLASNQVNYSLIYRKPE--ENGVKAACDE-LGITLIAY 252 (280)
Q Consensus 218 ~~~~~q~~~n~~~~~~~--~~~l~~~~~~-~gi~i~a~ 252 (280)
.++++..--+++..... ..++++..++ .+++|++-
T Consensus 144 G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~e 181 (248)
T cd04728 144 GCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVD 181 (248)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEe
Confidence 45555332233332110 1245666655 47777764
No 72
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=66.94 E-value=71 Score=28.27 Aligned_cols=108 Identities=12% Similarity=-0.008 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCc-hhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEE
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGN-EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~-~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (280)
.+.+.+.+..++.++ -|.|+||+=. .|...+. ++..+.+..+++.-. .-|.+-+++++.++++++.+. ....
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~---G~~i 95 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQ---GKCV 95 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCC---CCcE
Confidence 556667666666654 4999999754 2332222 233333233332212 348888999999999988642 2344
Q ss_pred EEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCC
Q 023606 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 221 ~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G 258 (280)
+|-+. ....+.....+++.++++|.+++.+..-..|
T Consensus 96 INsIs--~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 96 VNSIN--LEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred EEeCC--CCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 44333 2221111125789999999999988654344
No 73
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=66.65 E-value=1.1e+02 Score=29.41 Aligned_cols=81 Identities=22% Similarity=0.169 Sum_probs=45.0
Q ss_pred HHHHHHHCCCCeEEcccccC---------CCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 023606 80 AFDTSLDNGITFFDTAEVYG---------SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (280)
Q Consensus 80 ~l~~A~~~Gin~~DTA~~Yg---------~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (280)
.++...++|+|.|.-.-.-. .+.+ -+.+-++++.....+ ...+.+--=.|. ...+.+.+++.
T Consensus 165 ~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~~------~~~~~~~i~~l~~~g-~~~v~~DlI~Gl--PgqT~e~~~~~ 235 (449)
T PRK09058 165 KADAALDAGANRFSIGVQSFNTQVRRRAGRKDD------REEVLARLEELVARD-RAAVVCDLIFGL--PGQTPEIWQQD 235 (449)
T ss_pred HHHHHHHcCCCEEEecCCcCCHHHHHHhCCCCC------HHHHHHHHHHHHhCC-CCcEEEEEEeeC--CCCCHHHHHHH
Confidence 44555567888876554332 2222 333334454432110 122322222232 46788888888
Q ss_pred HHHHHHHhCCCcccEEEEec
Q 023606 151 LKDSLFRLGLSSVELYQLHW 170 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH~ 170 (280)
++..++ ++.++|++|.+.-
T Consensus 236 l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 236 LAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred HHHHHh-cCCCEEEEecccc
Confidence 887664 8999999998763
No 74
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=66.47 E-value=1.1e+02 Score=28.30 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCC----------------CCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecC
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGS----------------RASFGAINSETLLGRFIKERKQRDPEVEVTVATKF 135 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----------------g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~ 135 (280)
.+.+....+.+++-+.|+.||-|.-.-.. ++. ..-.+| +.+.+. ...++|+|=.
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~----~n~pLL-~~~A~~-----gkPvilStGm 142 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEI----TNAPLL-KKIARF-----GKPVILSTGM 142 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccc----cCHHHH-HHHHhc-----CCcEEEECCC
Confidence 55688889999999999999877532211 000 001111 111111 2445555543
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC---chhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHH
Q 023606 136 AALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (280)
Q Consensus 136 ~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~---~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~ 212 (280)
.+.+.+..+++...+. |.+.-|+.+||+...++ .+-=+.++..|++.=. .-||+|+|+.....-.+.++
T Consensus 143 ------atl~Ei~~Av~~i~~~-G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt~G~~~~~aAva 214 (329)
T TIGR03569 143 ------ATLEEIEAAVGVLRDA-GTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHTLGIEAPIAAVA 214 (329)
T ss_pred ------CCHHHHHHHHHHHHHc-CCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCCccHHHHHHHHH
Confidence 4788888888887643 43222699999877533 2233556666665432 57999999876554444443
Q ss_pred HhcCCCEEEEcccCCc
Q 023606 213 KKRGIPLASNQVNYSL 228 (280)
Q Consensus 213 ~~~~~~~~~~q~~~n~ 228 (280)
. | -.++.-+|.+
T Consensus 215 l--G--A~iIEkH~tl 226 (329)
T TIGR03569 215 L--G--ATVIEKHFTL 226 (329)
T ss_pred c--C--CCEEEeCCCh
Confidence 2 2 2355555554
No 75
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=66.25 E-value=45 Score=31.88 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=58.6
Q ss_pred cccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC-cccEEEEecCC
Q 023606 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-SVELYQLHWAG 172 (280)
Q Consensus 94 TA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d-~iDl~~lH~pd 172 (280)
..-.||. |+.|-++|++.....+.+-++|.|=+- ...-.+.+...+++.-++.... .+.++.++.|+
T Consensus 63 ~d~V~Gg---------~~~L~~ai~~~~~~~~p~~I~v~ttC~---~~iiGdDi~~v~~~~~~~~~~~~~~~vi~v~tpg 130 (435)
T cd01974 63 DAAVFGG---------QNNLIDGLKNAYAVYKPDMIAVSTTCM---AEVIGDDLNAFIKNAKNKGSIPADFPVPFANTPS 130 (435)
T ss_pred CceEECc---------HHHHHHHHHHHHHhcCCCEEEEeCCch---HhhhhccHHHHHHHHHHhccCCCCCeEEEecCCC
Confidence 4457886 888889988766433245566666653 2233333444443333333111 47899999887
Q ss_pred CCC-----chhHHHHHH-HHHH-------cCcccEEEecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 173 IWG-----NEGFIDGLG-DAVE-------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 173 ~~~-----~~~~~~~L~-~lk~-------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
... .+.++++|- ++.+ .+.|--||-.+...+.+.++.+..+..|+++.+
T Consensus 131 f~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 131 FVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 622 223333332 2222 234555552222222244555555556666643
No 76
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.55 E-value=37 Score=29.08 Aligned_cols=88 Identities=15% Similarity=0.224 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEEE
Q 023606 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 143 ~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~ 221 (280)
+.+...+.++ .|-+-|+..+.+=+ ..++..+.+++++++.-=-.||..+. +.++++++++. +.+|.+
T Consensus 14 ~~~~a~~ia~-al~~gGi~~iEit~-------~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~a----GA~Fiv 81 (201)
T PRK06015 14 DVEHAVPLAR-ALAAGGLPAIEITL-------RTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKA----GSRFIV 81 (201)
T ss_pred CHHHHHHHHH-HHHHCCCCEEEEeC-------CCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHc----CCCEEE
Confidence 4444444333 34445665554332 23567888888887644467999887 88999988775 345644
Q ss_pred EcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 222 ~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
. + ... .+++++|++++|.++.
T Consensus 82 S-----P---~~~-~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 S-----P---GTT-QELLAAANDSDVPLLP 102 (201)
T ss_pred C-----C---CCC-HHHHHHHHHcCCCEeC
Confidence 1 2 112 2699999999998875
No 77
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=64.55 E-value=1.2e+02 Score=28.13 Aligned_cols=155 Identities=8% Similarity=-0.048 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
+.++..+.++.+.+.|++.|=.- .++...- .-....=+++++... .++-|..-.. ..++.+.-.+- -
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~----~~di~~i~~vR~~~G----~~~~l~vDan---~~~~~~~A~~~-~ 209 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVV----RRDLKACLAVREAVG----PDMRLMHDGA---HWYSRADALRL-G 209 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhH----HHHHHHHHHHHHHhC----CCCeEEEECC---CCcCHHHHHHH-H
Confidence 44677778888899999988652 1111000 001222344444321 2343333331 23444322221 1
Q ss_pred HHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCcc-HHHHHHHHHHHHhcCCCEEEEcccCCccC
Q 023606 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYS-EKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~-~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (280)
+.|+.+ ++.++-.|- +.++ ++.+.+|+++-.|. ..|=+-++ ...++++++. -.++++|+..+.+-
T Consensus 210 ~~l~~~-----~l~~iEeP~--~~~d-~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~-----~a~d~v~~d~~~~G 276 (368)
T cd03329 210 RALEEL-----GFFWYEDPL--REAS-ISSYRWLAEKLDIPILGTEHSRGALESRADWVLA-----GATDFLRADVNLVG 276 (368)
T ss_pred HHhhhc-----CCCeEeCCC--Cchh-HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHh-----CCCCEEecCccccC
Confidence 223333 444554443 2233 57788888875543 23444456 7777777665 35778887766543
Q ss_pred CCcchhhHHHHHHHcCCeEEEcc
Q 023606 231 RKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
--.+...+.+.|+++|+.+..++
T Consensus 277 Git~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 277 GITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEC
Confidence 22223368999999999997654
No 78
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=64.54 E-value=76 Score=30.29 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEe-cCCC-----------CC-ch---hHHHHH-HHHHHcCcccEEEecCccH
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI-----------WG-NE---GFIDGL-GDAVEQGLVKAVGVSNYSE 202 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH-~pd~-----------~~-~~---~~~~~L-~~lk~~G~ir~iGvS~~~~ 202 (280)
...+.+.+.+.++..++ |+.|+|.+|.+- -|.. .+ .+ +.++.. +.|.+.|. +.+|+|||..
T Consensus 199 P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 199 PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 45677778888877764 679999999984 3432 11 11 334433 45567787 9999999965
No 79
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=64.43 E-value=1e+02 Score=27.18 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (280)
.+.++..++++.-.+.|+..++.+
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 455788889999999999999987
No 80
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=64.34 E-value=1e+02 Score=30.37 Aligned_cols=139 Identities=14% Similarity=0.132 Sum_probs=74.9
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC--chhHHHHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~--~~~~~~~L~~lk 187 (280)
|+.|-++|++.....+.+-++|.+=+ ..+-|-..++...+.++. .++++.++.+.... ..+.-.+|+.++
T Consensus 70 ~ekL~~aI~~~~~~~~P~~I~V~sTC-------~seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~~~~~~G~~~al~~lv 141 (519)
T PRK02910 70 AELLKDTLRRADERFQPDLIVVGPSC-------TAELLQEDLGGLAKHAGL-PIPVLPLELNAYRVKENWAADETFYQLV 141 (519)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCc-------HHHHhccCHHHHHHHhCC-CCCEEEEecCCcccccchHHHHHHHHHH
Confidence 66777777766432223444555544 344455566666666665 36799999887622 223333333322
Q ss_pred ---------------HcCcccEEEecC---ccHHHHHHHHHHHHhcCCCEEEEcc--------------cCCccCCCcch
Q 023606 188 ---------------EQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYRKPEE 235 (280)
Q Consensus 188 ---------------~~G~ir~iGvS~---~~~~~i~~~~~~~~~~~~~~~~~q~--------------~~n~~~~~~~~ 235 (280)
+.+.|--||.+. +++..+.++.+..+..|+++.++-. .+|+.-.....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~VNIiG~~~l~f~~~~D~~EikrlL~~~Gi~vn~v~p~g~s~~di~~l~~A~~nivl~~~~g 221 (519)
T PRK02910 142 RALAKKAAELPQPKTARPSVNLLGPTALGFHHRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYREIG 221 (519)
T ss_pred HHHhhhcccccccCCCCCeEEEEecCccCCCChhHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCcEEEEeCHHHH
Confidence 124588888764 2455666666666666766655421 12222111111
Q ss_pred hhHHHHH-HHcCCeEEEcccCc
Q 023606 236 NGVKAAC-DELGITLIAYCPIA 256 (280)
Q Consensus 236 ~~l~~~~-~~~gi~i~a~spl~ 256 (280)
..+-++. ++.|++++...|+|
T Consensus 222 ~~~A~~Lee~fGiP~i~~~PiG 243 (519)
T PRK02910 222 ESAARYLEREFGQPYVKTVPIG 243 (519)
T ss_pred HHHHHHHHHHhCCccccccccc
Confidence 1233444 46689988777765
No 81
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=64.02 E-value=1.3e+02 Score=28.11 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=60.6
Q ss_pred CCchhHHHHHHHHHHc-Cc---ccEEEec--CccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCc----ch---hhHHH
Q 023606 174 WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EE---NGVKA 240 (280)
Q Consensus 174 ~~~~~~~~~L~~lk~~-G~---ir~iGvS--~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~----~~---~~l~~ 240 (280)
++.+++++++.+..+. |+ +-++=+. |-+.+.++++.+.+. +.++.++-++||+..... .. ....+
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~--~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~ 300 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLK--GKYAVMNLIPYNSVDGDAYRRPSGERIVAMAR 300 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHh--ccccccceecCCccCCCCccCCCHHHHHHHHH
Confidence 4577888888776543 42 1233232 457899988888754 356788889999865322 11 14566
Q ss_pred HHHHcCCeEEEcccCc------CCCCCCCCCC
Q 023606 241 ACDELGITLIAYCPIA------QGSKPRKRNW 266 (280)
Q Consensus 241 ~~~~~gi~i~a~spl~------~G~L~~~~~~ 266 (280)
..+++||.+......| +|.|..+...
T Consensus 301 ~L~~~gi~~tiR~~~G~di~aACGqL~~~~~~ 332 (344)
T PRK14464 301 YLHRRGVLTKVRNSAGQDVDGGCGQLRARAAK 332 (344)
T ss_pred HHHHCCceEEEECCCCCchhhcCcchhhhhcc
Confidence 7788999999987765 5888776543
No 82
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=63.48 E-value=88 Score=29.10 Aligned_cols=102 Identities=14% Similarity=0.064 Sum_probs=67.3
Q ss_pred ccE-EEEecCCC------------CCchhHHHHHHHHHHcC--c--ccEEEecC--ccHHHHHHHHHHHHhcCCCEEEEc
Q 023606 163 VEL-YQLHWAGI------------WGNEGFIDGLGDAVEQG--L--VKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQ 223 (280)
Q Consensus 163 iDl-~~lH~pd~------------~~~~~~~~~L~~lk~~G--~--ir~iGvS~--~~~~~i~~~~~~~~~~~~~~~~~q 223 (280)
+.| +.+|.++. .+.+++++++.+..+.+ . ++++=+.+ -+.+.++++.+.+... +..++-
T Consensus 207 ~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l--~~~vnl 284 (349)
T PRK14463 207 VNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDI--PSKVNL 284 (349)
T ss_pred eEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcc--CceEEE
Confidence 344 66888765 22467777777766543 2 34555554 4679999998887643 456777
Q ss_pred ccCCccCCC----cchh---hHHHHHHHcCCeEEEcccCc------CCCCCCCCCC
Q 023606 224 VNYSLIYRK----PEEN---GVKAACDELGITLIAYCPIA------QGSKPRKRNW 266 (280)
Q Consensus 224 ~~~n~~~~~----~~~~---~l~~~~~~~gi~i~a~spl~------~G~L~~~~~~ 266 (280)
++||+.... +... ...+.++++||.+......| +|.|..+...
T Consensus 285 IPyn~~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~~~~ 340 (349)
T PRK14463 285 IPFNEHEGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISAACGQLKGKLDK 340 (349)
T ss_pred EecCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcchhhccCcccccccC
Confidence 999987532 1111 35667789999999997765 5888876654
No 83
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=63.40 E-value=42 Score=28.61 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 177 EGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 177 ~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
++..+.++.++++--=..||..+. +.++++++++. |..|.+. + ... .+++++|++++|.++.
T Consensus 44 ~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a----GA~FivS-----P---~~~-~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 44 PNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA----GAQFIVS-----P---GFD-PEVIEYAREYGIPYIP 106 (196)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH----T-SEEEE-----S---S---HHHHHHHHHHTSEEEE
T ss_pred ccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc----CCCEEEC-----C---CCC-HHHHHHHHHcCCcccC
Confidence 456777777776533366999987 89999999876 3456552 1 112 2699999999999986
No 84
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=63.30 E-value=1.1e+02 Score=27.07 Aligned_cols=118 Identities=9% Similarity=-0.058 Sum_probs=68.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcCcccEEEecCccHH
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEK 203 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~ 203 (280)
++++.+.--.. .-.+.++-.+..+-+.+.+++++|-|=.+.++.. .++.+.+++-+.|+++|.+-. =-++-++-
T Consensus 60 ~~~~~lLPNTa---Gc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~Vl-PY~~~D~v 135 (247)
T PF05690_consen 60 RSGYTLLPNTA---GCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVL-PYCTDDPV 135 (247)
T ss_dssp CCTSEEEEE-T---T-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEE-EEE-S-HH
T ss_pred ccCCEECCcCC---CCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEe-ecCCCCHH
Confidence 34555444332 3577877778888888999999999888777665 567899999999999996432 22333556
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCccCCCcc--h-hhHHHHHHHcCCeEEEcc
Q 023606 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPE--E-NGVKAACDELGITLIAYC 253 (280)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~--~-~~l~~~~~~~gi~i~a~s 253 (280)
..+++.+. -..++..--+++-.... + .-+-..+++.+++++.-.
T Consensus 136 ~akrL~d~------GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDA 182 (247)
T PF05690_consen 136 LAKRLEDA------GCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDA 182 (247)
T ss_dssp HHHHHHHT------T-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES
T ss_pred HHHHHHHC------CCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeC
Confidence 66666543 46666665566543221 1 124445567788887643
No 85
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=62.83 E-value=49 Score=28.40 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=57.3
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEEE
Q 023606 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 143 ~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~ 221 (280)
+++...+ +-+.|-.-|+..+.+=+ ..++..+.+++++++.-=-.||..+. +.++.+++++. +-+|.+
T Consensus 18 ~~e~a~~-~~~al~~~Gi~~iEit~-------~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a----GA~Fiv 85 (204)
T TIGR01182 18 DVDDALP-LAKALIEGGLRVLEVTL-------RTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA----GAQFIV 85 (204)
T ss_pred CHHHHHH-HHHHHHHcCCCEEEEeC-------CCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc----CCCEEE
Confidence 4444433 33445556765554332 23567888888887644467999987 88999998775 345653
Q ss_pred EcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 222 NQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 222 ~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
++ .... +++++|+++||.++.
T Consensus 86 -----sP---~~~~-~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 -----SP---GLTP-ELAKHAQDHGIPIIP 106 (204)
T ss_pred -----CC---CCCH-HHHHHHHHcCCcEEC
Confidence 12 1122 699999999998876
No 86
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=62.58 E-value=40 Score=29.06 Aligned_cols=80 Identities=18% Similarity=0.095 Sum_probs=51.2
Q ss_pred HHhCCCcccEEEEe-cCCCCCchhHHHHHHHHHHcCc-ccEEEecCc-cHHHHHHHHHHHHhcCCCEEEEcccCCccCCC
Q 023606 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (280)
Q Consensus 156 ~~Lg~d~iDl~~lH-~pd~~~~~~~~~~L~~lk~~G~-ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (280)
..+|.||+=+++.- .|...+.+.+ .++.+.-. ++.+||... +.+.+.++++. ..++++|++-.
T Consensus 19 ~~~gad~iG~If~~~SpR~Vs~~~a----~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~-----~~ld~VQlHG~----- 84 (208)
T COG0135 19 AKAGADYIGFIFVPKSPRYVSPEQA----REIASAVPKVKVVGVFVNESIEEILEIAEE-----LGLDAVQLHGD----- 84 (208)
T ss_pred HHcCCCEEEEEEcCCCCCcCCHHHH----HHHHHhCCCCCEEEEECCCCHHHHHHHHHh-----cCCCEEEECCC-----
Confidence 46788888877665 4444444333 33333333 889998854 78889888876 67999998864
Q ss_pred cchhhHHHHHHHcC-CeEE
Q 023606 233 PEENGVKAACDELG-ITLI 250 (280)
Q Consensus 233 ~~~~~l~~~~~~~g-i~i~ 250 (280)
+..+.++..++.. +.|+
T Consensus 85 -e~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 85 -EDPEYIDQLKEELGVPVI 102 (208)
T ss_pred -CCHHHHHHHHhhcCCceE
Confidence 2224566666554 4443
No 87
>PRK07329 hypothetical protein; Provisional
Probab=62.52 E-value=1.1e+02 Score=26.79 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCCcccEEEEecCCC----------CCchh----HHHHHHHHHHcC-cccEEEecC----------cc-
Q 023606 148 LAALKDSLFRLGLSSVELYQLHWAGI----------WGNEG----FIDGLGDAVEQG-LVKAVGVSN----------YS- 201 (280)
Q Consensus 148 ~~~l~~sl~~Lg~d~iDl~~lH~pd~----------~~~~~----~~~~L~~lk~~G-~ir~iGvS~----------~~- 201 (280)
...++..+.+...||+ +..+|+.+. .+.++ .++.+.++.+.+ .+.-+|=-. .+
T Consensus 82 ~~~~~~~l~~~~~Dyv-IgSvH~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~fdvlgHpDl~~r~~~~~~~~~ 160 (246)
T PRK07329 82 EDDILDFLANKDFDLK-LLSVHHNGVYDYLDDEVADMDKKELLQEYFEKMEEAIGRVHDADVLAHFDYGLRLFDLTVEEL 160 (246)
T ss_pred HHHHHHHhccCCCCeE-EEEEEEcCCCCCccHHHhcCCHHHHHHHHHHHHHHHHHccCCCCEeeeccHHHHhCCCCCcCh
Confidence 3456666666778888 888898532 11223 347778877766 655554111 11
Q ss_pred ---HHHHHHHHHHHHhcCCCEEEEcccCC-ccCCCcchhhHHHHHHHcCCeEEEc
Q 023606 202 ---EKRLRNAYEKLKKRGIPLASNQVNYS-LIYRKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 202 ---~~~i~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
.+.++++++.+.+.+..+.+|-..+. -...... ..+++.|++.|+..++.
T Consensus 161 ~~~~~~~~~i~~~~~~~~~~lEiNt~~~~~~~~~~~~-~~~l~~~~~~g~~~i~~ 214 (246)
T PRK07329 161 KAFEPQLTRIFAKMIDNDLAFELNTKSMYLYGNEGLY-RYAIELYKQLGGKLFSI 214 (246)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEECcccccCCCCcch-HHHHHHHHHcCCeEEEe
Confidence 35556777777777777777765432 1111111 25799999999864443
No 88
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=62.48 E-value=93 Score=28.47 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=66.6
Q ss_pred HHHHHHhCCCcccEEEEecCCC------CCchhHHHHHHHHHHcCcc-cEEEecCc---cHHHHHHHHHHHHhcCCCEEE
Q 023606 152 KDSLFRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQGLV-KAVGVSNY---SEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~------~~~~~~~~~L~~lk~~G~i-r~iGvS~~---~~~~i~~~~~~~~~~~~~~~~ 221 (280)
+...++.|. |++.+|-.+. .+..++...|+++.+.=+| --||=|.. +++.++++.+.+.-. ++-.
T Consensus 157 rk~Vk~fga---dmvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGe--RclL 231 (403)
T COG2069 157 RKCVKKFGA---DMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGE--RCLL 231 (403)
T ss_pred HHHHHHhCC---ceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCc--eEEe
Confidence 444566775 7888886432 4578899999998887666 56777765 689999999986522 3333
Q ss_pred EcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcC
Q 023606 222 NQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (280)
Q Consensus 222 ~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~ 257 (280)
...+.++ +.+ .+.+.+.++|=.+++|++..-
T Consensus 232 aSanldl---Dy~--~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 232 ASANLDL---DYE--RIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred ecccccc---CHH--HHHHHHHhcCceEEEeeccCh
Confidence 3333322 222 589999999999999998754
No 89
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=62.23 E-value=1.3e+02 Score=27.59 Aligned_cols=89 Identities=19% Similarity=0.129 Sum_probs=63.0
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHH
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i 205 (280)
++.+.++.|.... .-...+.+.+++..+.+|. ++.+ ..+...+.....+.++.+..+| +..|-++..+++.+
T Consensus 23 ~~~i~~v~k~~~~---pf~~~~~~Gi~~aa~~~G~---~v~~-~~~~~~d~~~q~~~i~~li~~~-vdgIiv~~~d~~al 94 (336)
T PRK15408 23 AERIAFIPKLVGV---GFFTSGGNGAKEAGKELGV---DVTY-DGPTEPSVSGQVQLINNFVNQG-YNAIIVSAVSPDGL 94 (336)
T ss_pred CcEEEEEECCCCC---HHHHHHHHHHHHHHHHhCC---EEEE-ECCCCCCHHHHHHHHHHHHHcC-CCEEEEecCCHHHH
Confidence 5788899997532 2245678889999999984 4443 3444344556678899999876 88999988887777
Q ss_pred HHHHHHHHhcCCCEEEE
Q 023606 206 RNAYEKLKKRGIPLASN 222 (280)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (280)
...++.+...++++..+
T Consensus 95 ~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 95 CPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 77777776667765554
No 90
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=62.18 E-value=1.1e+02 Score=26.97 Aligned_cols=88 Identities=15% Similarity=0.152 Sum_probs=47.6
Q ss_pred CCchhHHHHHHHHHHcCcccEEEecCc----cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcc-hhhHHHHHHHcCCe
Q 023606 174 WGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE-ENGVKAACDELGIT 248 (280)
Q Consensus 174 ~~~~~~~~~L~~lk~~G~ir~iGvS~~----~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-~~~l~~~~~~~gi~ 248 (280)
.+.+.+.+..+++.+.| +..|.+++. .|+++.++++.+++. ++-.-+.+.||.=+.... .--.+.. -+.|+.
T Consensus 140 ~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~i~l~~H~Hn~~GlA~An~laA-i~aG~~ 216 (268)
T cd07940 140 TDLDFLIEVVEAAIEAG-ATTINIPDTVGYLTPEEFGELIKKLKEN-VPNIKVPISVHCHNDLGLAVANSLAA-VEAGAR 216 (268)
T ss_pred CCHHHHHHHHHHHHHcC-CCEEEECCCCCCCCHHHHHHHHHHHHHh-CCCCceeEEEEecCCcchHHHHHHHH-HHhCCC
Confidence 34555666666777766 677777764 577777777665542 110011223333111100 0012333 356888
Q ss_pred EEEcccCcCCCCCCCC
Q 023606 249 LIAYCPIAQGSKPRKR 264 (280)
Q Consensus 249 i~a~spl~~G~L~~~~ 264 (280)
++--+..+.|.-+|+.
T Consensus 217 ~iD~s~~GlG~~aGN~ 232 (268)
T cd07940 217 QVECTINGIGERAGNA 232 (268)
T ss_pred EEEEEeeccccccccc
Confidence 8888888888766654
No 91
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=62.04 E-value=1.4e+02 Score=28.12 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCC-CCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD-PEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~-~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
+....+.|+.++++|+ ..+.|++.+- -+.+-.|.++.-... +.+.++++.- +...+.
T Consensus 40 pp~i~~Al~~rvdhGv----fGY~~~~~~~------~~ai~~w~~~r~~~~i~~e~i~~~p~------------VVpgi~ 97 (388)
T COG1168 40 PPEIIEALRERVDHGV----FGYPYGSDEL------YAAIAHWFKQRHQWEIKPEWIVFVPG------------VVPGIS 97 (388)
T ss_pred CHHHHHHHHHHHhcCC----CCCCCCCHHH------HHHHHHHHHHhcCCCCCcceEEEcCc------------chHhHH
Confidence 3677889999999997 2333443111 233444444432211 2333333332 233444
Q ss_pred HHHHHhCCCcccEEEEecCCCCC--------------------chh---HHHHHHHHHHcCcccEEEecC--------cc
Q 023606 153 DSLFRLGLSSVELYQLHWAGIWG--------------------NEG---FIDGLGDAVEQGLVKAVGVSN--------YS 201 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~lH~pd~~~--------------------~~~---~~~~L~~lk~~G~ir~iGvS~--------~~ 201 (280)
...+.+- +.=|-+.++.|-..+ ... =++.||+...++.++-+=+|| |+
T Consensus 98 ~~I~~~T-~~gd~Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt 176 (388)
T COG1168 98 LAIRALT-KPGDGVVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWT 176 (388)
T ss_pred HHHHHhC-cCCCeeEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCcccc
Confidence 4444442 244677777665411 112 277888888888877777776 55
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcccCCcc
Q 023606 202 EKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (280)
Q Consensus 202 ~~~i~~~~~~~~~~~~~~~~~q~~~n~~ 229 (280)
.+.++++.+.|.++++.+.+..++--+.
T Consensus 177 ~eeL~~i~elc~kh~v~VISDEIHaDlv 204 (388)
T COG1168 177 KEELRKIAELCLRHGVRVISDEIHADLV 204 (388)
T ss_pred HHHHHHHHHHHHHcCCEEEeeccccccc
Confidence 6888888888888887776666554443
No 92
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=61.68 E-value=97 Score=29.19 Aligned_cols=99 Identities=13% Similarity=0.033 Sum_probs=66.6
Q ss_pred cEEEEecCCC------------CCchhHHHHHHHHH-HcCc---ccEEEecCc--cHHHHHHHHHHHHhcC-CCEEEEcc
Q 023606 164 ELYQLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSNY--SEKRLRNAYEKLKKRG-IPLASNQV 224 (280)
Q Consensus 164 Dl~~lH~pd~------------~~~~~~~~~L~~lk-~~G~---ir~iGvS~~--~~~~i~~~~~~~~~~~-~~~~~~q~ 224 (280)
=.+.||.++. ++.+++++++.++. +.|+ |.|+=+.++ +.+.++++.+.++... ....++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 3467898875 23678888877776 4454 566666654 5777888877765331 15788999
Q ss_pred cCCccCCCcc----h---hhHHHHHHHcCCeEEEcccCc------CCCCCC
Q 023606 225 NYSLIYRKPE----E---NGVKAACDELGITLIAYCPIA------QGSKPR 262 (280)
Q Consensus 225 ~~n~~~~~~~----~---~~l~~~~~~~gi~i~a~spl~------~G~L~~ 262 (280)
+||++..... . ....+..+++||.+......| +|.|..
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~dI~aACGQL~~ 370 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQEIDGACGQLAA 370 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcCHhhcCCcccc
Confidence 9999654221 1 136677789999999987765 466654
No 93
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=61.39 E-value=1.3e+02 Score=28.24 Aligned_cols=105 Identities=22% Similarity=0.210 Sum_probs=57.0
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC------chhHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDGL 183 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~------~~~~~~~L 183 (280)
|+.|-+++++.....+.+-++|.|=+.. ..-.+.+..-+++.-++.+ +.++.+|.+.... .+.++++|
T Consensus 72 ~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~~G~~~a~~al 145 (406)
T cd01967 72 EKKLKKAIKEAYERFPPKAIFVYSTCPT---GLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGVSQSLGHHIANDAI 145 (406)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCCcccHHHHHHHHHH
Confidence 8888888887654322344666665532 2333334444444434444 7899999887622 23344444
Q ss_pred HHHH---------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 184 GDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 184 ~~lk---------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
-+.. +++.|--||..++. ..+.++.+..+..|+++..
T Consensus 146 ~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gi~~~~ 191 (406)
T cd01967 146 LDHLVGTKEPEEKTPYDVNIIGEYNIG-GDAWVIKPLLEELGIRVNA 191 (406)
T ss_pred HHHhcCCCCcCCCCCCeEEEEeccccc-hhHHHHHHHHHHcCCEEEE
Confidence 3332 23568888877652 2344444444555665544
No 94
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=61.15 E-value=1.7e+02 Score=30.53 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHc--CcccEEEecCccHHHHHHHHHH
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEK 211 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~--G~ir~iGvS~~~~~~i~~~~~~ 211 (280)
.+.+.+++.++...........-+|+|+..+... .+.+++|.+..++ ..+++|-+++.....+..+...
T Consensus 99 rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR 169 (830)
T PRK07003 99 RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-NHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR 169 (830)
T ss_pred ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-HHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh
Confidence 4456666666655433323345688888776543 3567888777777 5899999999765555555443
No 95
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=61.12 E-value=86 Score=28.57 Aligned_cols=117 Identities=10% Similarity=0.026 Sum_probs=66.4
Q ss_pred HHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCC-CCCCCCHHHHHHHHHHHH
Q 023606 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LPWRLGRQSVLAALKDSL 155 (280)
Q Consensus 77 ~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~-~~~~~~~~~i~~~l~~sl 155 (280)
..++...|...|+.++-++..+-.-.. .+.+.+|++. +.--||..+... ..|.++++.. ++...
T Consensus 164 kkd~~~Ia~a~g~~YVA~~~~~~~~~l------~~~i~~A~~~------~Gps~I~v~sPC~~~~~~~~~~~---~~~~k 228 (299)
T PRK11865 164 KKNMPLIMAAHGIPYVATASIGYPEDF------MEKVKKAKEV------EGPAYIQVLQPCPTGWGFPPEKT---IEIGR 228 (299)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCCHHHH------HHHHHHHHhC------CCCEEEEEECCCCCCCCCCHHHH---HHHHH
Confidence 345666777789999999887743222 3344444431 245556666543 3355565543 44444
Q ss_pred HHhCCCcccEEEEecCCC--------CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHH
Q 023606 156 FRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (280)
Q Consensus 156 ~~Lg~d~iDl~~lH~pd~--------~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~ 213 (280)
....+.+.-||-+..-.. .+...-...-+.|+.||+.+++ ++++++++.+.++
T Consensus 229 lAvetg~~plye~~~g~~~~~~~~~~ld~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q~~v~ 289 (299)
T PRK11865 229 LAVETGYWPLFEIENGKFKITYEPLHLDRRTRKPIEEYLKVQGRFKHL-----TEEDIEILQKYID 289 (299)
T ss_pred HHHhcCceeEEEEECCeeccCCCcccccccCCCCHHHHHhhCcchhcC-----CHHHHHHHHHHHH
Confidence 444466777777654211 0100012234557889999998 6777887776654
No 96
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=60.87 E-value=42 Score=31.35 Aligned_cols=140 Identities=17% Similarity=0.203 Sum_probs=74.0
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCC-----CchhHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIW-----GNEGFIDGLG 184 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~-----~~~~~~~~L~ 184 (280)
|+.+-+++++.....+++-++|.|=... ..-.+.+..-+++.-++.+. .++.+|.+... +.+.++.+|-
T Consensus 59 ~~kL~~~i~~~~~~~~P~~i~v~~sC~~---~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~~~~~~G~~~a~~~l~ 132 (398)
T PF00148_consen 59 EEKLREAIKEIAEKYKPKAIFVVTSCVP---EIIGDDIEAVARELQEEYGI---PVIPVHTPGFSGSYSQGYDAALRALA 132 (398)
T ss_dssp HHHHHHHHHHHHHHHSTSEEEEEE-HHH---HHTTTTHHHHHHHHHHHHSS---EEEEEE--TTSSSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCCcEEEEECCCCH---HHhCCCHHHHHHHhhcccCC---cEEEEECCCccCCccchHHHHHHHHH
Confidence 8888888876553322466777766531 22223344444444455554 88888887761 2344555554
Q ss_pred HHH-H------cCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcc--------------cCCccCCCcchhhHHHHHH
Q 023606 185 DAV-E------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYRKPEENGVKAACD 243 (280)
Q Consensus 185 ~lk-~------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~--------------~~n~~~~~~~~~~l~~~~~ 243 (280)
+.. + .+.|--||.++.....+.++.+..+..|+++...-. .+|+.........+.++.+
T Consensus 133 ~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L~ 212 (398)
T PF00148_consen 133 EQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWLE 212 (398)
T ss_dssp HHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHHH
T ss_pred hhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHHH
Confidence 443 2 367888999977655556665556655654433321 2334333222212556655
Q ss_pred H-cCCeEEE-cccC
Q 023606 244 E-LGITLIA-YCPI 255 (280)
Q Consensus 244 ~-~gi~i~a-~spl 255 (280)
+ .|++.+. -.|+
T Consensus 213 e~~giP~~~~~~p~ 226 (398)
T PF00148_consen 213 ERFGIPYLYFPSPY 226 (398)
T ss_dssp HHHT-EEEEEC-SB
T ss_pred HHhCCCeeeccccc
Confidence 5 5999988 4444
No 97
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=60.71 E-value=36 Score=29.63 Aligned_cols=32 Identities=9% Similarity=0.111 Sum_probs=25.7
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEEcccccCCC
Q 023606 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYGSR 101 (280)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g 101 (280)
++.+.++..++++.|.++|++-+=..++|-.|
T Consensus 15 Gp~s~eesl~ml~~A~~qGvt~iVaTsHh~~g 46 (254)
T COG4464 15 GPKSLEESLAMLREAVRQGVTKIVATSHHLHG 46 (254)
T ss_pred CCCcHHHHHHHHHHHHHcCceEEeecccccCC
Confidence 44567999999999999999977766666554
No 98
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=60.19 E-value=1.3e+02 Score=27.00 Aligned_cols=118 Identities=12% Similarity=0.113 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHH---HhCCCcccEEEEecCC--CCCchhHHHHHHHHHHcCcccEEEecCc----cHHHHHHHHHHH
Q 023606 142 LGRQSVLAALKDSLF---RLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKL 212 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~---~Lg~d~iDl~~lH~pd--~~~~~~~~~~L~~lk~~G~ir~iGvS~~----~~~~i~~~~~~~ 212 (280)
.+++...+.+.+..+ ..|. .+.+...+... ..+.+.+.+..+++.+.| +..|.+++. +|.++.++++..
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDLP-IKRIMLPDTLGILSPFETYTYISDM 185 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHcC-CCEEEecCCCCCCCHHHHHHHHHHH
Confidence 445555444444443 3354 46666665322 245667777777777777 777887763 577777777665
Q ss_pred HhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCCCCC
Q 023606 213 KKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKPRKR 264 (280)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~~~~ 264 (280)
.+. .+ . +.+.+|.=+....-..=.-.+-+.|+..+--+..+.|--+|+-
T Consensus 186 ~~~-~~-~-~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN~ 234 (280)
T cd07945 186 VKR-YP-N-LHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGNA 234 (280)
T ss_pred Hhh-CC-C-CeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccCc
Confidence 432 11 1 1122222111110001122445778888888888878666654
No 99
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=59.80 E-value=85 Score=30.26 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=46.1
Q ss_pred CchhHHHHHHHHHHcCcccE----EEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCC
Q 023606 175 GNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (280)
Q Consensus 175 ~~~~~~~~L~~lk~~G~ir~----iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi 247 (280)
..+.+.++++.+++.|.--. +|+-+-+.+.+++.++.+.+.+ ++. +.++++.+-+.+ .+.+.+++.|+
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~--~~~--~~~~~l~P~PGT-~l~~~~~~~g~ 392 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELN--PHT--IQVSLAAPYPGT-ELYDQAKQNGW 392 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcC--CCc--eeeeecccCCCc-HHHHHHHHCCC
Confidence 35678888888999886433 2556667888888888776543 332 335566666665 58888888776
No 100
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=58.85 E-value=1.6e+02 Score=27.91 Aligned_cols=141 Identities=11% Similarity=0.101 Sum_probs=67.6
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC--chhHHHHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~--~~~~~~~L~~lk 187 (280)
++.+-++|++.....+.+-++|.|=+. ...-.+.+...+++.-++++ +.++.+|.|.... ..+.-.+++.+.
T Consensus 70 ~~kL~~~I~~~~~~~~p~~I~v~~tC~---~~iIGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~~~~g~~~al~~l~ 143 (430)
T cd01981 70 QEKVVENITRKDKEEKPDLIVLTPTCT---SSILQEDLQNFVRAAGLSSK---SPVLPLDVNHYRVNELQAADETFEQLV 143 (430)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcc---HHHHhhCHHHHHHHhhhccC---CCeEEecCCCccchHHHHHHHHHHHHH
Confidence 455556665544322234555655542 12223333333333333332 5788888887622 223333333332
Q ss_pred -----------------HcCcccEEEecCcc---HHHHHHHHHHHHhcCCCEEEEcc--------------cCCccCCCc
Q 023606 188 -----------------EQGLVKAVGVSNYS---EKRLRNAYEKLKKRGIPLASNQV--------------NYSLIYRKP 233 (280)
Q Consensus 188 -----------------~~G~ir~iGvS~~~---~~~i~~~~~~~~~~~~~~~~~q~--------------~~n~~~~~~ 233 (280)
++..|--||.++.+ +..+.++.+..+..|+++.++-. ..|+.....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~~~~~d~~ei~~lL~~~Gl~v~~~~~~~~~~~~i~~~~~A~lniv~~~~ 223 (430)
T cd01981 144 RFYAEKARPQGTPREKTEKPSVNLIGPSSLGFHNRHDCRELKRLLHTLGIEVNVVIPEGASVDDLNELPKAWFNIVPYRE 223 (430)
T ss_pred HHHhccccccccccccCCCCcEEEEcCCCCCCCCcchHHHHHHHHHHcCCeEEEEEcCCCCHHHHHhhhhCeEEEEecHH
Confidence 12457888877533 45555555555666766655322 122221111
Q ss_pred chhhHHHHH-HHcCCeEEEcccCc
Q 023606 234 EENGVKAAC-DELGITLIAYCPIA 256 (280)
Q Consensus 234 ~~~~l~~~~-~~~gi~i~a~spl~ 256 (280)
....+-++. ++.|++.+...|++
T Consensus 224 ~~~~~a~~L~~~~GiP~~~~~p~G 247 (430)
T cd01981 224 YGLSAALYLEEEFGMPSVKITPIG 247 (430)
T ss_pred HHHHHHHHHHHHhCCCeEeccCCC
Confidence 111233334 46699988776664
No 101
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=58.22 E-value=1.6e+02 Score=27.30 Aligned_cols=153 Identities=12% Similarity=0.027 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
++++..+-...+++.|++.|=.-- |.. . ..+...=+++++... +++-|..=.. ..++.+.-.+-+
T Consensus 138 ~~e~~~~~a~~~~~~Gf~~~Kikv--g~~-~----~~d~~~v~~vRe~~G----~~~~l~vDaN---~~~~~~~A~~~~- 202 (352)
T cd03328 138 DDDRLREQLSGWVAQGIPRVKMKI--GRD-P----RRDPDRVAAARRAIG----PDAELFVDAN---GAYSRKQALALA- 202 (352)
T ss_pred CHHHHHHHHHHHHHCCCCEEEeec--CCC-H----HHHHHHHHHHHHHcC----CCCeEEEECC---CCCCHHHHHHHH-
Confidence 345556666777889998765321 210 0 002233345554331 2333333331 234444322222
Q ss_pred HHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHc--Ccc-cEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCcc
Q 023606 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~--G~i-r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~ 229 (280)
+.|+.+ ++.++-.|- + .+-++.+.+|+++ -.| -..|=|-++...+.++++. ...+++|+...-+
T Consensus 203 ~~l~~~-----~~~~~EeP~--~-~~d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~-----~a~div~~d~~~~ 269 (352)
T cd03328 203 RAFADE-----GVTWFEEPV--S-SDDLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEA-----HAVDVLQADVTRC 269 (352)
T ss_pred HHHHHh-----CcchhhCCC--C-hhhHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHc-----CCCCEEecCcccc
Confidence 223333 444444442 2 3347888888887 323 3566677788888888764 3478888877654
Q ss_pred CCCcchhhHHHHHHHcCCeEEEcc
Q 023606 230 YRKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
---.+-..+.++|+.+|+.++.++
T Consensus 270 GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 270 GGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred CCHHHHHHHHHHHHHcCCeeccCc
Confidence 322223368999999999998874
No 102
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=58.16 E-value=52 Score=31.51 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=51.5
Q ss_pred HHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhc---CCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 023606 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKR---GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 181 ~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~---~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~sp 254 (280)
+-...+-+.|-+..+|....+++++++.++.++.. +-+|-+|-+ .++-+... +.++++.|.++|+.++..+-
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~-e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPEL-EEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchh-HHHHHHHHHHcCCCEEEecc
Confidence 34445567899999999999999999999988763 446777653 23222221 23689999999998876654
No 103
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=57.56 E-value=1.4e+02 Score=29.03 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=60.2
Q ss_pred EcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCC
Q 023606 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (280)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd 172 (280)
+..-.||. |+.|-++|.+.....+.+-++|.|=+.. ..-.+.+..-+++.-++++ +.++.++.++
T Consensus 96 E~dvVfGg---------~~kL~~~I~ei~~~~~P~~I~V~tTC~~---~lIGdDi~~v~~~~~~~~~---~pvi~v~t~G 160 (475)
T PRK14478 96 ETDVVFGG---------EKKLFKAIDEIIEKYAPPAVFVYQTCVV---ALIGDDIDAVCKRAAEKFG---IPVIPVNSPG 160 (475)
T ss_pred cCceeeCC---------HHHHHHHHHHHHHhcCCCEEEEeCCChH---HHhccCHHHHHHHHHHhhC---CCEEEEECCC
Confidence 34446785 8888888887664332455666666532 2223333444444334444 6888888877
Q ss_pred CCC-----chhHHHHHH-HHH--------HcCcccEEEecCcc--HHHHHHHHHHHHhcCCCEEE
Q 023606 173 IWG-----NEGFIDGLG-DAV--------EQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 173 ~~~-----~~~~~~~L~-~lk--------~~G~ir~iGvS~~~--~~~i~~~~~~~~~~~~~~~~ 221 (280)
... ...++++|- ++. +.+.|--||-.++. .+.|+++++ ..|+++.+
T Consensus 161 f~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~---~~Gl~v~~ 222 (475)
T PRK14478 161 FVGNKNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLD---RLGIRVVA 222 (475)
T ss_pred cccchhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHH---HcCCeEEE
Confidence 632 223333332 232 23568888866653 345555544 45565543
No 104
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=57.50 E-value=3.9 Score=38.23 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=35.8
Q ss_pred cCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCc-cCCCcchhhHHHHHHHcCCeE
Q 023606 189 QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL-IYRKPEENGVKAACDELGITL 249 (280)
Q Consensus 189 ~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~-~~~~~~~~~l~~~~~~~gi~i 249 (280)
-|+|||+||--++.++++++++..+ .-+..+.+..+ +++... .+++.+++.||+-
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~----e~dly~~Q~~ifLDP~DP--~Vi~~A~k~Gip~ 318 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN----EKDLYERQLDVFLDPHDP--AVIEQARKDGIPD 318 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc----HHHHHHHHHhhhcCCCCH--HHHHHHHHcCCcH
Confidence 3999999999999999999976522 11222223333 233222 5888888888763
No 105
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=57.10 E-value=51 Score=27.26 Aligned_cols=63 Identities=24% Similarity=0.189 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCcc----cEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 023606 148 LAALKDSLFRLGLSSV----ELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (280)
Q Consensus 148 ~~~l~~sl~~Lg~d~i----Dl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~ 211 (280)
+..++..++++|.+.- +.+.-.+......+++.+.|++|++.| ++-.-+||.+.+.++..++.
T Consensus 62 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 62 REALRYLLGRLGLEDDESAADRLAEAYLRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHH
Confidence 4556666666665421 111111111234578899999999998 45555777777777766553
No 106
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=56.99 E-value=93 Score=30.32 Aligned_cols=68 Identities=10% Similarity=0.125 Sum_probs=46.9
Q ss_pred CchhHHHHHHHHHHcCcccE----EEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCC
Q 023606 175 GNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (280)
Q Consensus 175 ~~~~~~~~L~~lk~~G~ir~----iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi 247 (280)
..+++.++++.+++.|.... +|+-+-+.+.+++.++.+...+ ++ ++.++++.+.+.+ ++.+.+++.+.
T Consensus 321 t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~--~~--~~~~~~~tP~PGT-~l~~~~~~~~~ 392 (497)
T TIGR02026 321 TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWD--PD--QANWLMYTPWPFT-SLFGELSDRVE 392 (497)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcC--CC--ceEEEEecCCCCc-HHHHHHHhhcc
Confidence 45678899999999997433 4555667888888887765433 33 3445667777766 58888877653
No 107
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=56.41 E-value=53 Score=31.07 Aligned_cols=84 Identities=10% Similarity=-0.077 Sum_probs=57.3
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHcCccc-EEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHH
Q 023606 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVK-AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (280)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir-~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (280)
.++.++-.|-+ .+-++.+.+|++.-.|. ..|=|-++...++++++. ..++++|+...-+---.....+.++
T Consensus 232 ~~l~~iEeP~~---~~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~-----~a~dii~~d~~~~GGit~~~kia~l 303 (404)
T PRK15072 232 YRLFWLEDPTP---AENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEE-----QLIDYIRTTVTHAGGITHLRRIADF 303 (404)
T ss_pred cCCcEEECCCC---ccCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHc-----CCCCEEecCccccCcHHHHHHHHHH
Confidence 46666665532 23368888888886554 667777888888888764 3477777766544322222358899
Q ss_pred HHHcCCeEEEccc
Q 023606 242 CDELGITLIAYCP 254 (280)
Q Consensus 242 ~~~~gi~i~a~sp 254 (280)
|+++|+.++.++.
T Consensus 304 A~~~gi~~~~h~~ 316 (404)
T PRK15072 304 AALYQVRTGSHGP 316 (404)
T ss_pred HHHcCCceeeccC
Confidence 9999999988654
No 108
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=56.15 E-value=1.4e+02 Score=26.19 Aligned_cols=133 Identities=16% Similarity=0.169 Sum_probs=81.0
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC---CCchhHHHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDA 186 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~---~~~~~~~~~L~~l 186 (280)
+..+.++++..........+.++..+.. ..+....+...+.+.+++.+++.- -+.+--.+. ...+.+...+.+|
T Consensus 69 ~~v~~~a~~~~~~~~~~~~~~l~iNis~--~~l~~~~~~~~l~~~l~~~~~~~~-~l~lEitE~~~~~~~~~~~~~l~~L 145 (256)
T COG2200 69 RWVLEEACRQLRTWPRAGPLRLAVNLSP--VQLRSPGLVDLLLRLLARLGLPPH-RLVLEITESALIDDLDTALALLRQL 145 (256)
T ss_pred HHHHHHHHHHHHhhhhcCCceEEEEcCH--HHhCCchHHHHHHHHHHHhCCCcc-eEEEEEeCchhhcCHHHHHHHHHHH
Confidence 7777777777653210113777777754 223344566678888888876543 333332222 2334688899999
Q ss_pred HHcCcccEEEecCcc--HHHHHHHHHHHHhcCCCEEEEcccCCccCCCc---c----hhhHHHHHHHcCCeEEEcc
Q 023606 187 VEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP---E----ENGVKAACDELGITLIAYC 253 (280)
Q Consensus 187 k~~G~ir~iGvS~~~--~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~---~----~~~l~~~~~~~gi~i~a~s 253 (280)
++.| -.|.+.+|. ...+..+.+ ++|+++.+.-+.+..-. . -..++..|++.|+.+++-.
T Consensus 146 ~~~G--~~ialDDFGtG~ssl~~L~~------l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEG 213 (256)
T COG2200 146 RELG--VRIALDDFGTGYSSLSYLKR------LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEG 213 (256)
T ss_pred HHCC--CeEEEECCCCCHHHHHHHhh------CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEee
Confidence 9999 356666663 344444433 47888777766654211 1 1258899999999998853
No 109
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=55.99 E-value=2e+02 Score=27.96 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCc
Q 023606 142 LGRQSVLAALKDSLFRLGLSS 162 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~ 162 (280)
.+++.+.+.++...++.|+..
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~ 242 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF 242 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE
Confidence 567778888887777777654
No 110
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=55.95 E-value=1.5e+02 Score=27.04 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=12.7
Q ss_pred HHHHHHHcCCeEEEcccCcCCC
Q 023606 238 VKAACDELGITLIAYCPIAQGS 259 (280)
Q Consensus 238 l~~~~~~~gi~i~a~spl~~G~ 259 (280)
.++.+++.||.+...+++-.|.
T Consensus 219 ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 219 ACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred HHHHHHHcCCEEEEEeeEeCCC
Confidence 4555556666666666665553
No 111
>PRK00208 thiG thiazole synthase; Reviewed
Probab=55.72 E-value=1.5e+02 Score=26.32 Aligned_cols=106 Identities=10% Similarity=-0.111 Sum_probs=71.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCC
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~ 217 (280)
.-.+.++-.+-.+-..+.+++++|-|=.+.++.. .++.+.+++.++|.++|.+- +=+|+-++...+++.+.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~------ 143 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA------ 143 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc------
Confidence 3577777777788888889999999888887765 56889999999999999643 34566677777777654
Q ss_pred CEEEEcccCCccCCCcc--hhhHHHHHHH-cCCeEEEc
Q 023606 218 PLASNQVNYSLIYRKPE--ENGVKAACDE-LGITLIAY 252 (280)
Q Consensus 218 ~~~~~q~~~n~~~~~~~--~~~l~~~~~~-~gi~i~a~ 252 (280)
.++++..--+++..... ..++++..++ .+++|++-
T Consensus 144 G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIve 181 (250)
T PRK00208 144 GCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVD 181 (250)
T ss_pred CCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEe
Confidence 45555332233322110 1245666666 47887764
No 112
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=55.66 E-value=68 Score=28.15 Aligned_cols=38 Identities=8% Similarity=0.148 Sum_probs=26.4
Q ss_pred CchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHH
Q 023606 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (280)
Q Consensus 175 ~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~ 213 (280)
..+++.+.|+.|+++|..-.| +||.+...+...++...
T Consensus 102 ~~pg~~elL~~L~~~g~~l~I-~T~~~~~~~~~~l~~~~ 139 (267)
T PRK13478 102 PIPGVLEVIAALRARGIKIGS-TTGYTREMMDVVVPLAA 139 (267)
T ss_pred CCCCHHHHHHHHHHCCCEEEE-EcCCcHHHHHHHHHHHh
Confidence 356788999999999865555 56666666666665443
No 113
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=55.64 E-value=60 Score=28.65 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=47.2
Q ss_pred CCCccccceeeeccc---cCCCCCCCCCccchhhHHHHHHHHHHH----HHCCCCeEEccc---ccCCCCCCCCchhhHH
Q 023606 43 GSDLKVTKLGVGAWS---WGDTSYWNNFQWDDRKMKAAKAAFDTS----LDNGITFFDTAE---VYGSRASFGAINSETL 112 (280)
Q Consensus 43 ~tg~~vs~lglGt~~---~g~~~~~~~~~~~~~~~~~~~~~l~~A----~~~Gin~~DTA~---~Yg~g~~~~~~~sE~~ 112 (280)
.||+.+|-+||...+ ||.. ++...+++.++++.| .+.|||.|--|. .|.... ++.
T Consensus 65 etgv~ipSmClSaHRRfPfGS~--------D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d-------~eT 129 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSK--------DEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEAD-------EET 129 (287)
T ss_pred HhCCCccchhhhhhccCCCCCC--------CHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCC-------HHH
Confidence 579999999999875 3332 345566666666655 567999998774 233321 444
Q ss_pred HHHHHHhcc---cCCCCCcEEEEecC
Q 023606 113 LGRFIKERK---QRDPEVEVTVATKF 135 (280)
Q Consensus 113 lG~aL~~~~---~~~~R~~~~I~tK~ 135 (280)
..+++.... ....+-.+.++.-+
T Consensus 130 ~~rFi~g~~~a~~lA~~aqV~lAvEi 155 (287)
T COG3623 130 RQRFIEGLKWAVELAARAQVMLAVEI 155 (287)
T ss_pred HHHHHHHHHHHHHHHHhhccEEEeee
Confidence 444444322 11135677777665
No 114
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=55.54 E-value=82 Score=29.38 Aligned_cols=100 Identities=13% Similarity=0.073 Sum_probs=65.6
Q ss_pred EEEEecCCC------------CCchhHHHHHHHHHH-cCc---ccEEEecCc--cHHHHHHHHHHHHhcCCCEEEEcccC
Q 023606 165 LYQLHWAGI------------WGNEGFIDGLGDAVE-QGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNY 226 (280)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~lk~-~G~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (280)
.+.||.+++ ++.+++++++.++.+ .|. |+++=+.++ +.+.++++.+.++. +++.++-++|
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPy 295 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKG--TKCKVNLIPW 295 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCceEEEec
Confidence 377898874 225778888876544 442 455555554 56888888887653 4567777899
Q ss_pred CccCCCc----chh---hHHHHHHHcCCeEEEcccCc------CCCCCCCCCC
Q 023606 227 SLIYRKP----EEN---GVKAACDELGITLIAYCPIA------QGSKPRKRNW 266 (280)
Q Consensus 227 n~~~~~~----~~~---~l~~~~~~~gi~i~a~spl~------~G~L~~~~~~ 266 (280)
|.+.... ... .+.++.+++|+.++.....| +|.|..+...
T Consensus 296 np~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di~aaCGqL~~~~~~ 348 (355)
T TIGR00048 296 NPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDIDAACGQLRAKDVI 348 (355)
T ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhhcCCcchhhhcc
Confidence 9865322 111 34566778899999987765 5888766543
No 115
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=55.46 E-value=1.7e+02 Score=26.99 Aligned_cols=24 Identities=8% Similarity=0.169 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (280)
.+.++..++++...++|+..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 455888999999999999999985
No 116
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=55.15 E-value=90 Score=26.79 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEE
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (280)
++.+...+-+ ..|.++|+++|++- .|.. ....+.++.+.+.... .+-.+++....+.++.+++.+...+.+..
T Consensus 11 ~~~~~k~~i~-~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKLEIA-KALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHHHHH-HHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHHHHH-HHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 4555444444 45888888888877 2211 1122233333333333 44455566666777776665555555444
Q ss_pred EEcccCCccCCC------c-----chhhHHHHHHHcCCeE
Q 023606 221 SNQVNYSLIYRK------P-----EENGVKAACDELGITL 249 (280)
Q Consensus 221 ~~q~~~n~~~~~------~-----~~~~l~~~~~~~gi~i 249 (280)
.+-...|..... . .-.+.++++++.|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 443444431100 0 0014577777777777
No 117
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=55.11 E-value=31 Score=29.54 Aligned_cols=66 Identities=8% Similarity=0.007 Sum_probs=43.5
Q ss_pred HHHHhCCCcccEEEEe-cCCCCCchhHHHHHHHHHHcCcccEEEec-CccHHHHHHHHHHHHhcCCCEEEEcccC
Q 023606 154 SLFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH-~pd~~~~~~~~~~L~~lk~~G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (280)
....+|.|++=+++.. .|...+.+.+-+....+ .+.++.+||. +-+++.+.++++. ..++++|++-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a~~i~~~~--~~~~~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQIKKLASAV--PNHIDKVCVVVNPDLTTIEHILSN-----TSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----CCCCEEEECC
Confidence 3456999999987543 23334444433333322 2568899996 6688999988775 5789999875
No 118
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=55.02 E-value=72 Score=27.48 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
++++...+.+.+.++|..|+=|+.-|+.+.+ +.+-+ +.+++.. +++ +-.|... .-.+.+...+.++
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~ga-----t~~dv-~~m~~~v----~~~--v~IKaaG--Girt~~~a~~~i~ 195 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGA-----TVEDV-RLMRNTV----GDT--IGVKASG--GVRTAEDAIAMIE 195 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCC-----CHHHH-HHHHHHh----ccC--CeEEEeC--CCCCHHHHHHHHH
Confidence 3466778999999999999999988874322 13222 3333332 122 2334332 1247888899999
Q ss_pred HHHHHhCCCcc
Q 023606 153 DSLFRLGLSSV 163 (280)
Q Consensus 153 ~sl~~Lg~d~i 163 (280)
.--.|+|+++.
T Consensus 196 aGa~riGts~~ 206 (211)
T TIGR00126 196 AGASRIGASAG 206 (211)
T ss_pred HhhHHhCcchH
Confidence 99999998753
No 119
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=53.95 E-value=1.8e+02 Score=26.72 Aligned_cols=149 Identities=13% Similarity=0.033 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
++..+.+..+.+.|++.|=.-- +.... .+.+ +++++.. .++-|..=.. ..++.+... .
T Consensus 139 ~~~~~~~~~~~~~Gf~~~KiKv--~~~~d------~~~l-~~vr~~~-----g~~~l~lDaN---~~~~~~~a~-----~ 196 (354)
T cd03317 139 EQLLKQIERYLEEGYKRIKLKI--KPGWD------VEPL-KAVRERF-----PDIPLMADAN---SAYTLADIP-----L 196 (354)
T ss_pred HHHHHHHHHHHHcCCcEEEEec--ChHHH------HHHH-HHHHHHC-----CCCeEEEECC---CCCCHHHHH-----H
Confidence 4566777888899998764321 22111 3333 5555443 1333333331 234444321 2
Q ss_pred HHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcc-cEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCc
Q 023606 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~i-r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (280)
+++|. ..++.++-.|-. .+-++.+.+|++.-.+ -..|=|-++.+.+..+++. ..++++|+....+-.-.
T Consensus 197 ~~~l~--~~~i~~iEeP~~---~~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~-----~~~d~~~ik~~~~GGit 266 (354)
T cd03317 197 LKRLD--EYGLLMIEQPLA---ADDLIDHAELQKLLKTPICLDESIQSAEDARKAIEL-----GACKIINIKPGRVGGLT 266 (354)
T ss_pred HHHhh--cCCccEEECCCC---hhHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHc-----CCCCEEEecccccCCHH
Confidence 34432 345666665532 2336677777765332 4666777888888888664 34677777655443222
Q ss_pred chhhHHHHHHHcCCeEEEcccC
Q 023606 234 EENGVKAACDELGITLIAYCPI 255 (280)
Q Consensus 234 ~~~~l~~~~~~~gi~i~a~spl 255 (280)
+-..+..+|+++|+.++..+.+
T Consensus 267 ~~~~i~~~A~~~gi~~~~g~~~ 288 (354)
T cd03317 267 EALKIHDLCQEHGIPVWCGGML 288 (354)
T ss_pred HHHHHHHHHHHcCCcEEecCcc
Confidence 2235889999999999875543
No 120
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=53.87 E-value=71 Score=27.63 Aligned_cols=39 Identities=10% Similarity=0.134 Sum_probs=28.3
Q ss_pred CchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHh
Q 023606 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (280)
Q Consensus 175 ~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~ 214 (280)
..+++.+.|+.|++.|.--.| +||.+.+.++..++....
T Consensus 100 ~~pg~~e~L~~L~~~g~~l~I-vT~~~~~~~~~~l~~~gl 138 (253)
T TIGR01422 100 PIPGVIEVIAYLRARGIKIGS-TTGYTREMMDVVAPEAAL 138 (253)
T ss_pred cCCCHHHHHHHHHHCCCeEEE-ECCCcHHHHHHHHHHHHh
Confidence 457889999999999865555 677777777777665443
No 121
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=53.85 E-value=1e+02 Score=29.36 Aligned_cols=109 Identities=10% Similarity=0.099 Sum_probs=61.0
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC-CCcccEEEEecCCCCC--chhHHHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG-LSSVELYQLHWAGIWG--NEGFIDGLGDA 186 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg-~d~iDl~~lH~pd~~~--~~~~~~~L~~l 186 (280)
|+.+-++|++.....+.+-++|.|=+.. ..-.+.+..-+++.-++.. ...+.++.+|.|+... ..+...+++.+
T Consensus 66 ~~~L~~~i~~~~~~~~p~~I~V~ttc~~---eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al 142 (417)
T cd01966 66 GENLEEALDTLAERAKPKVIGLLSTGLT---ETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAI 142 (417)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcc---cccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHH
Confidence 8888888887653322455677766642 2333334444444333311 0146789999988732 33333333333
Q ss_pred H------------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 187 V------------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 187 k------------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
. +.++|--||-++.++..++++.+..+..++++.+
T Consensus 143 ~~~l~~~~~~~~~~~~~VNiig~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 143 IEALVEPGSRTVTDPRQVNLLPGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred HHHhcccccccCCCCCcEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 2 2456888875555566666666666667776644
No 122
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=53.11 E-value=72 Score=28.41 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 023606 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (280)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl 155 (280)
+...+.+.|+++|..|+=|+.-|+.+.+ ....-+++-+.+++... ..+ +.-|... .-.+.+....-++..-
T Consensus 148 ~i~~a~~~a~~aGADFVKTSTGf~~~gA--t~edv~lm~~~i~~~~~---~~~--vgIKAsG--GIrt~~~A~~~i~ag~ 218 (257)
T PRK05283 148 LIRKASEIAIKAGADFIKTSTGKVPVNA--TLEAARIMLEVIRDMGV---AKT--VGFKPAG--GVRTAEDAAQYLALAD 218 (257)
T ss_pred HHHHHHHHHHHhCCCEEEcCCCCCCCCC--CHHHHHHHHHHHHhccc---CCC--eeEEccC--CCCCHHHHHHHHHHHH
Confidence 4778899999999999999999875333 12223344444443221 122 4456532 3367888899999999
Q ss_pred HHhCCCccc
Q 023606 156 FRLGLSSVE 164 (280)
Q Consensus 156 ~~Lg~d~iD 164 (280)
+.||.+|++
T Consensus 219 ~~lg~~~~~ 227 (257)
T PRK05283 219 EILGADWAD 227 (257)
T ss_pred HHhChhhcC
Confidence 999999887
No 123
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=52.68 E-value=1.4e+02 Score=26.36 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEE-EEecCCC--CCch-h---HHHHHHHHHHc-CcccEEEecCccHHHHHHHHHHHH
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELY-QLHWAGI--WGNE-G---FIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYEKLK 213 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~-~lH~pd~--~~~~-~---~~~~L~~lk~~-G~ir~iGvS~~~~~~i~~~~~~~~ 213 (280)
.+.+.+.+..++.+ .-|.++||+= .--+|+. .+.+ | +...++.+++. + .-+.+-+++++.++++++.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~--~plsiDT~~~~vi~~al~~-- 94 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPD--VPISVDTYRAEVARAALEA-- 94 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC--CeEEEeCCCHHHHHHHHHc--
Confidence 34555555554443 4589999983 1123433 2222 2 45555666655 4 2488889999999999876
Q ss_pred hcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 023606 214 KRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~sp 254 (280)
....+|-+.. .. .+ ++++.++++|.+++.+.-
T Consensus 95 ---G~~iINsis~--~~--~~--~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 95 ---GADIINDVSG--GQ--DP--AMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred ---CCCEEEECCC--CC--Cc--hhHHHHHHcCCcEEEEeC
Confidence 2344443332 21 12 589999999999999643
No 124
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=52.61 E-value=1.5e+02 Score=28.59 Aligned_cols=116 Identities=9% Similarity=0.063 Sum_probs=62.5
Q ss_pred cccccCCCCCCCCchhhHHHHHHHHhcccCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC----cccEEEE
Q 023606 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQL 168 (280)
Q Consensus 94 TA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d----~iDl~~l 168 (280)
..-.||. |+.|-++|++.....+ .+-++|.|=+. ...-.|.+..-+++..+++..+ .+.++.+
T Consensus 67 ~dvVfGG---------~~kL~~aI~~~~~~~~~p~~I~V~ttC~---~eiIGDDi~~v~~~~~~~~~~e~~~~~~~vv~v 134 (457)
T TIGR02932 67 ESAVFGG---------AKRIEEGVLTLARRYPNLRVIPIITTCS---TETIGDDIEGSIRKVNRALKKEFPDRKIKLVPV 134 (457)
T ss_pred CceEECc---------HHHHHHHHHHHHHhCCCCCEEEEECCch---HHhhcCCHHHHHHHHHhhhhhhcCCCCCeEEEe
Confidence 3457886 8889999988654321 23466666653 2233334444444433333222 4788999
Q ss_pred ecCCCCC-----chhHHHHHH-HHHH-----cCcccEEEecCccHHHHHHHHHHHHhcCCCEEEE
Q 023606 169 HWAGIWG-----NEGFIDGLG-DAVE-----QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 169 H~pd~~~-----~~~~~~~L~-~lk~-----~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~ 222 (280)
+.|+... .+.++++|- .+.+ +++|--||-.+ ++..++++.+..+..++++.++
T Consensus 135 ~tpgF~gs~~~G~~~a~~ali~~~~~~~~~~~~~VNii~~~~-~~gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 135 HTPSFKGSQVTGYAECVKSVIKTIAAKKGEPSGKLNVFPGWV-NPGDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred eCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEEE
Confidence 9998732 233333333 2211 36677776433 3444555555555666665553
No 125
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=52.51 E-value=1.6e+02 Score=27.82 Aligned_cols=113 Identities=22% Similarity=0.211 Sum_probs=60.5
Q ss_pred EcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCC
Q 023606 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (280)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd 172 (280)
+..-.||. |+.|-++|++.....+.+-++|.|=+.. ..-.+.+..-+++.-+++ .+.++.+|.|.
T Consensus 63 E~d~VfGg---------~~~L~~~i~~~~~~~~P~~i~v~~tC~~---~~iGdDi~~v~~~~~~~~---~~~vi~v~t~g 127 (410)
T cd01968 63 EKDVIFGG---------EKKLYKAILEIIERYHPKAVFVYSTCVV---ALIGDDIDAVCKTASEKF---GIPVIPVHSPG 127 (410)
T ss_pred ccceeecc---------HHHHHHHHHHHHHhCCCCEEEEECCCch---hhhccCHHHHHHHHHHhh---CCCEEEEECCC
Confidence 44456786 8888888887654333455666666532 233333444444433343 35788899887
Q ss_pred CCC-----chhHHHHHHHHH---------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 173 IWG-----NEGFIDGLGDAV---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 173 ~~~-----~~~~~~~L~~lk---------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
... .+.++++|-+.. +++.|--||-.++. ..+.++.+..+..|+++.+
T Consensus 128 f~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~~-~d~~el~~lL~~~Gl~v~~ 189 (410)
T cd01968 128 FVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNVA-GELWGVKPLLEKLGIRVLA 189 (410)
T ss_pred cccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCCc-ccHHHHHHHHHHcCCeEEE
Confidence 622 223444443322 14667778844442 2233444444555666554
No 126
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=52.37 E-value=1.9e+02 Score=26.49 Aligned_cols=90 Identities=10% Similarity=0.052 Sum_probs=50.1
Q ss_pred CcEEEEecCCCCC---CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-------CCchhHHHHHHHHHHcCcccEEE
Q 023606 127 VEVTVATKFAALP---WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVG 196 (280)
Q Consensus 127 ~~~~I~tK~~~~~---~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-------~~~~~~~~~L~~lk~~G~ir~iG 196 (280)
+++.|..|+.... ...+.+...+ +-+.|+..|+|+|+ +|.... ......++.+.++++.=.|.-++
T Consensus 220 ~d~~v~vri~~~~~~~~g~~~~e~~~-ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~ 295 (336)
T cd02932 220 EDKPLFVRISATDWVEGGWDLEDSVE-LAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPVIA 295 (336)
T ss_pred CCceEEEEEcccccCCCCCCHHHHHH-HHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCCCCEEE
Confidence 5677888876421 2234443332 22345566765555 442111 11222356677777776777788
Q ss_pred ecCc-cHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 197 VSNY-SEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 197 vS~~-~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
..++ +++.++++++. ...+++++-
T Consensus 296 ~G~i~t~~~a~~~l~~-----g~aD~V~~g 320 (336)
T cd02932 296 VGLITDPEQAEAILES-----GRADLVALG 320 (336)
T ss_pred eCCCCCHHHHHHHHHc-----CCCCeehhh
Confidence 8776 78888888764 235555443
No 127
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=51.87 E-value=2e+02 Score=26.75 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=64.5
Q ss_pred EEEecCCC------------CCchhHHHHHHHHHHcC-c---ccEEEecCc--cHHHHHHHHHHHHhcCCCEEEEcccCC
Q 023606 166 YQLHWAGI------------WGNEGFIDGLGDAVEQG-L---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYS 227 (280)
Q Consensus 166 ~~lH~pd~------------~~~~~~~~~L~~lk~~G-~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (280)
+-||.++. .+.++++++++++.+++ . |+++=+.++ +.+.++++.+.++. .+..++-++||
T Consensus 223 iSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~--l~~~VnLIPyn 300 (356)
T PRK14455 223 ISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKG--IKCHVNLIPVN 300 (356)
T ss_pred eccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCcEEEEecC
Confidence 66787764 23478999999887753 2 345544444 56888888888653 34677788999
Q ss_pred ccCCC----cchh---hHHHHHHHcCCeEEEcccCc------CCCCCCC
Q 023606 228 LIYRK----PEEN---GVKAACDELGITLIAYCPIA------QGSKPRK 263 (280)
Q Consensus 228 ~~~~~----~~~~---~l~~~~~~~gi~i~a~spl~------~G~L~~~ 263 (280)
++... +... .+.+.++++|+.+......| +|.|..+
T Consensus 301 p~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~~g~di~aaCGqL~~~ 349 (356)
T PRK14455 301 PVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRREHGTDIDAACGQLRAK 349 (356)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCcchhhcCccchhh
Confidence 87632 1111 35667889999998887664 4666554
No 128
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=51.86 E-value=1.9e+02 Score=26.26 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecC-CC---CCchhHHHHHHHHHHc--Ccc-cEEEecCccHHHHHHHHHHHHh
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWA-GI---WGNEGFIDGLGDAVEQ--GLV-KAVGVSNYSEKRLRNAYEKLKK 214 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~p-d~---~~~~~~~~~L~~lk~~--G~i-r~iGvS~~~~~~i~~~~~~~~~ 214 (280)
.+.+.+++.++..++. -+|-+++-.- .+ ...+|-.+.++..++. |++ --.|++..+.+...++.+.++.
T Consensus 22 vD~~a~~~lv~~li~~----Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 22 VDEEALRRLVEFLIAA----GVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred cCHHHHHHHHHHHHHc----CCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHh
Confidence 5555555555544433 3565555542 22 4567777778877764 677 6778999988888888888888
Q ss_pred cCCC-EEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcc-cCcCCC
Q 023606 215 RGIP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYC-PIAQGS 259 (280)
Q Consensus 215 ~~~~-~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~s-pl~~G~ 259 (280)
.|.+ +.++-..|+-..+.....-....+.+-+++++.|. |...|.
T Consensus 98 ~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~ 144 (299)
T COG0329 98 LGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGV 144 (299)
T ss_pred cCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 8865 55555555554422111113334556699999997 655554
No 129
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=51.68 E-value=1.3e+02 Score=26.66 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 023606 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (280)
Q Consensus 78 ~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~ 157 (280)
.+.++.|++.|=-.|=.+.+||+ =+.++.+|.... ..+.+..+- .....+.+-+.+..++
T Consensus 110 ~e~l~~a~~~g~gvIl~t~H~Gn---------wE~~~~~l~~~~-----~~~~~i~~~------~~n~~~~~~~~~~R~~ 169 (295)
T PF03279_consen 110 EEHLEAALAEGRGVILLTGHFGN---------WELAGRALARRG-----PPVAVIYRP------QKNPYIDRLLNKLRER 169 (295)
T ss_pred HHHHHHHHhcCCCCEEeCcCcCh---------HHHHHHHHHhhC-----CceEEEecC------CccHhHHHHHHHHHHh
Confidence 45677777777777777788888 556778887665 345555443 1233455666666677
Q ss_pred hCCCccc
Q 023606 158 LGLSSVE 164 (280)
Q Consensus 158 Lg~d~iD 164 (280)
.|.+.++
T Consensus 170 ~g~~~i~ 176 (295)
T PF03279_consen 170 FGIELIP 176 (295)
T ss_pred cCCeEec
Confidence 7754443
No 130
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=51.56 E-value=77 Score=28.57 Aligned_cols=104 Identities=16% Similarity=0.051 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC-chhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEE
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~-~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (280)
++.+. +..+-+.|.++|+++|++-.++.|...+ ..+.++.+..+.+...++...+. .+...++.+++. +.+..
T Consensus 23 ~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~----g~~~v 96 (287)
T PRK05692 23 IPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA----GADEV 96 (287)
T ss_pred cCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc----CCCEE
Confidence 44443 3445566889999999998666665422 33456777777655446666655 477777777654 33322
Q ss_pred EEcccCCcc------CCCcc-----hhhHHHHHHHcCCeEEE
Q 023606 221 SNQVNYSLI------YRKPE-----ENGVKAACDELGITLIA 251 (280)
Q Consensus 221 ~~q~~~n~~------~~~~~-----~~~l~~~~~~~gi~i~a 251 (280)
.+-...|-. ....+ -.+.+++++++|+.+.+
T Consensus 97 ~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 97 AVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 221222211 11111 12588999999998863
No 131
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=51.56 E-value=1.1e+02 Score=27.21 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEec
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHW 170 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~ 170 (280)
+.++.+... .+-+.|.++|+++|++-+...
T Consensus 15 ~~f~~~~~~-~ia~~L~~~GVd~IEvG~~~~ 44 (266)
T cd07944 15 WDFGDEFVK-AIYRALAAAGIDYVEIGYRSS 44 (266)
T ss_pred ccCCHHHHH-HHHHHHHHCCCCEEEeecCCC
Confidence 345555444 344458888888888776543
No 132
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=51.38 E-value=1.7e+02 Score=25.64 Aligned_cols=88 Identities=15% Similarity=0.060 Sum_probs=50.0
Q ss_pred HHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEEEEcccCCccC
Q 023606 154 SLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (280)
-++.+|. |.+.+|..+. ....--++.+.++++.-.+.-|..... +++.++++.+. ...+.+.+.--+..
T Consensus 163 ~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~-----g~~dgv~~g~a~~~ 234 (254)
T TIGR00735 163 EVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTK-----GKADAALAASVFHY 234 (254)
T ss_pred HHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHc-----CCcceeeEhHHHhC
Confidence 3445564 6667776554 112223666777777766777777766 67888888664 11333222111111
Q ss_pred CCcchhhHHHHHHHcCCeE
Q 023606 231 RKPEENGVKAACDELGITL 249 (280)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~i 249 (280)
....-.++++.|+++|+.+
T Consensus 235 ~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 235 REITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCCHHHHHHHHHHCCCcc
Confidence 1222236899999999864
No 133
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=51.34 E-value=2.1e+02 Score=26.77 Aligned_cols=153 Identities=11% Similarity=0.076 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
.+.++..++++.+.+.|++.|-- .| |+..- ..-+-+.++.......-..+.|+|-.-. +.+.+
T Consensus 90 ls~eei~~~i~~~~~~Gv~~I~~---tG-GEPll----r~dl~eli~~l~~~~gi~~i~itTNG~l---------L~~~~ 152 (373)
T PLN02951 90 LSQDEIVRLAGLFVAAGVDKIRL---TG-GEPTL----RKDIEDICLQLSSLKGLKTLAMTTNGIT---------LSRKL 152 (373)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE---EC-CCCcc----hhhHHHHHHHHHhcCCCceEEEeeCcch---------HHHHH
Confidence 56788999999999999987753 23 32210 1112233332211000124666665411 12223
Q ss_pred HHHHHHhCCCcccEEEEecCCC---------CCchhHHHHHHHHHHcCcc--c--EEEecCccHHHHHHHHHHHHhcCCC
Q 023606 152 KDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLV--K--AVGVSNYSEKRLRNAYEKLKKRGIP 218 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~---------~~~~~~~~~L~~lk~~G~i--r--~iGvS~~~~~~i~~~~~~~~~~~~~ 218 (280)
..|...|++.+. +.|+..++ ...+.+++.++.+++.|+. + .+-+-.++.+++.++++.+...++
T Consensus 153 -~~L~~aGld~Vn-ISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi- 229 (373)
T PLN02951 153 -PRLKEAGLTSLN-ISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPI- 229 (373)
T ss_pred -HHHHhCCCCeEE-EeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCC-
Confidence 234445655433 23344332 1246889999999999852 1 233345788889999998876654
Q ss_pred EEEEcccCCccCCCcc-------hhhHHHHHHHc
Q 023606 219 LASNQVNYSLIYRKPE-------ENGVKAACDEL 245 (280)
Q Consensus 219 ~~~~q~~~n~~~~~~~-------~~~l~~~~~~~ 245 (280)
.+.-++|.++..... ..++++..+++
T Consensus 230 -~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~ 262 (373)
T PLN02951 230 -NVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQR 262 (373)
T ss_pred -eEEEEEcccCCCCccccccCCCHHHHHHHHHHh
Confidence 333345544432211 12466666554
No 134
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=51.17 E-value=1.8e+02 Score=25.84 Aligned_cols=25 Identities=4% Similarity=0.024 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEccc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~ 96 (280)
.+.++..++++.-.+.|+..|+...
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3457888899999999999999864
No 135
>PLN00191 enolase
Probab=50.82 E-value=94 Score=30.14 Aligned_cols=97 Identities=10% Similarity=0.003 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEE-ec-CccHHHHHHHHHHHHhcCCCEE
Q 023606 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVG-VS-NYSEKRLRNAYEKLKKRGIPLA 220 (280)
Q Consensus 143 ~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iG-vS-~~~~~~i~~~~~~~~~~~~~~~ 220 (280)
+++...+-++..+++ .++.++-.|-. ++-|+.+.+|.+...|.-+| =+ ..+++.++++++. -..+
T Consensus 296 s~~e~i~~~~~L~~~-----y~I~~IEDPl~---~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~-----~aad 362 (457)
T PLN00191 296 SGDELIDLYKEFVSD-----YPIVSIEDPFD---QDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQE-----KACN 362 (457)
T ss_pred CHHHHHHHHHHHhhc-----CCcEEEECCCC---cccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHh-----CCCC
Confidence 555555544444433 35666666633 33477888888887777666 22 2467888888765 3456
Q ss_pred EEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 023606 221 SNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 221 ~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
++++..|-+-.-.+..++.+.|+++|+.++.-
T Consensus 363 ~i~iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 363 ALLLKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred EEEecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 66666554443333446889999999998764
No 136
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=50.66 E-value=1.1e+02 Score=29.17 Aligned_cols=83 Identities=16% Similarity=0.037 Sum_probs=50.6
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHcC--cccEEEecC-c-cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhH
Q 023606 163 VELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVSN-Y-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGV 238 (280)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~lk~~G--~ir~iGvS~-~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l 238 (280)
.++.++-.|-. .+-|+.+.+|.+.- .+.-.|=-. . +++.++++++. -..+++|+..|-+-.-.+..++
T Consensus 278 ~~i~~iEdPl~---~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~-----~a~d~v~ik~~~iGGItea~~i 349 (425)
T TIGR01060 278 YPIVSIEDGLS---EEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEM-----GVANSILIKPNQIGTLTETLDA 349 (425)
T ss_pred CCcEEEEcCCC---cccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHh-----CCCCEEEecccccCCHHHHHHH
Confidence 45667776643 23367777776663 454433222 2 58888888765 3466676666554432333468
Q ss_pred HHHHHHcCCeEE-Ecc
Q 023606 239 KAACDELGITLI-AYC 253 (280)
Q Consensus 239 ~~~~~~~gi~i~-a~s 253 (280)
.+.|+++|+.++ .+.
T Consensus 350 a~lA~~~Gi~~vv~h~ 365 (425)
T TIGR01060 350 VELAKKAGYTAVISHR 365 (425)
T ss_pred HHHHHHcCCcEEEecC
Confidence 899999999855 444
No 137
>PRK00077 eno enolase; Provisional
Probab=50.56 E-value=1.1e+02 Score=29.24 Aligned_cols=96 Identities=18% Similarity=0.092 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcC--cccEEEec--CccHHHHHHHHHHHHhcCCC
Q 023606 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGVS--NYSEKRLRNAYEKLKKRGIP 218 (280)
Q Consensus 143 ~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G--~ir~iGvS--~~~~~~i~~~~~~~~~~~~~ 218 (280)
+++...+.+.+.++. .+++++-.|-. ++-|+.+.+|.++- .|.-.|=- ..+++.++++++. -.
T Consensus 262 s~~e~~~~~~~l~e~-----y~i~~iEdPl~---~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~-----~a 328 (425)
T PRK00077 262 TSEEMIDYLAELVDK-----YPIVSIEDGLD---ENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEK-----GA 328 (425)
T ss_pred CHHHHHHHHHHHHhh-----CCcEEEEcCCC---CccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHh-----CC
Confidence 455555555555554 45666776643 22367777777663 45444422 2368888888765 34
Q ss_pred EEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
.+++|+..+-+-.-.+..++..+|+++|+.++.
T Consensus 329 ~d~v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 329 ANSILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred CCEEEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 667776666544323334689999999997654
No 138
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.54 E-value=91 Score=26.83 Aligned_cols=88 Identities=15% Similarity=0.142 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCc---ccEEEecCc-cHHHHHHHHHHHHhcCCC
Q 023606 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL---VKAVGVSNY-SEKRLRNAYEKLKKRGIP 218 (280)
Q Consensus 143 ~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~---ir~iGvS~~-~~~~i~~~~~~~~~~~~~ 218 (280)
+.+..... -+.|-.-|+..+.+=+ ..+...+.+++++++-. =-.||..+. +.++++++.+. |-.
T Consensus 23 ~~~~a~~~-~~al~~~Gi~~iEit~-------~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a----GA~ 90 (213)
T PRK06552 23 SKEEALKI-SLAVIKGGIKAIEVTY-------TNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA----GAQ 90 (213)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEEC-------CCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc----CCC
Confidence 44444443 3445555665555433 23567888888877531 146898887 88999888765 345
Q ss_pred EEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
|.+ ++ .... +++++|+++||.++.
T Consensus 91 Fiv-----sP---~~~~-~v~~~~~~~~i~~iP 114 (213)
T PRK06552 91 FIV-----SP---SFNR-ETAKICNLYQIPYLP 114 (213)
T ss_pred EEE-----CC---CCCH-HHHHHHHHcCCCEEC
Confidence 655 22 1122 689999999998875
No 139
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=50.08 E-value=2e+02 Score=26.04 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCc-c-cEEEecCcc------------HHHH
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-V-KAVGVSNYS------------EKRL 205 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~-i-r~iGvS~~~------------~~~i 205 (280)
...+.+.+++-++...+ +. +-+.+-.--+|+.. .++.++.|.++++.|. + -++|+=+.+ .+.+
T Consensus 89 t~l~~~~L~~l~~~i~~-~~-~~~~isi~trpd~l-~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~t~~~~ 165 (302)
T TIGR01212 89 TYAPVEVLKEMYEQALS-YD-DVVGLSVGTRPDCV-PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKINRGHDFACY 165 (302)
T ss_pred CCCCHHHHHHHHHHHhC-CC-CEEEEEEEecCCcC-CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcChHHHH
Confidence 34566667776666655 21 11122111234422 4567788888888887 4 467776543 3455
Q ss_pred HHHHHHHHhcCCCEEEEcccCCccCCCcc-hhhHHHHHHHcCCe---EEEcccCcC
Q 023606 206 RNAYEKLKKRGIPLASNQVNYSLIYRKPE-ENGVKAACDELGIT---LIAYCPIAQ 257 (280)
Q Consensus 206 ~~~~~~~~~~~~~~~~~q~~~n~~~~~~~-~~~l~~~~~~~gi~---i~a~spl~~ 257 (280)
.++++.++..++.+. ..+-+.+=....+ ..+.++++.+.++. +....|+-+
T Consensus 166 ~~ai~~l~~~gi~v~-~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pg 220 (302)
T TIGR01212 166 VDAVKRARKRGIKVC-SHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKG 220 (302)
T ss_pred HHHHHHHHHcCCEEE-EeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCC
Confidence 556666666665432 2333333222211 12456666666544 444444443
No 140
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=49.94 E-value=96 Score=29.59 Aligned_cols=84 Identities=6% Similarity=-0.084 Sum_probs=56.3
Q ss_pred EEecCCCC-CchhHHHHHHHHHHc------CcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHH
Q 023606 167 QLHWAGIW-GNEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVK 239 (280)
Q Consensus 167 ~lH~pd~~-~~~~~~~~L~~lk~~------G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~ 239 (280)
++-.|-.. +.++-++.+.+|+++ ..=-..+-|-++.+.+.++++. --.+++|+..+-+---.+...+.
T Consensus 267 ~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~-----~a~d~v~iK~~k~GGIt~a~kia 341 (408)
T TIGR01502 267 RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDA-----KAGHMVQIKTPDVGGVNNIARAI 341 (408)
T ss_pred EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHh-----CCCCEEEeCccccCCHHHHHHHH
Confidence 66666532 223557888888766 3334555666788888888765 34777777766543323334689
Q ss_pred HHHHHcCCeEEEcccC
Q 023606 240 AACDELGITLIAYCPI 255 (280)
Q Consensus 240 ~~~~~~gi~i~a~spl 255 (280)
++|+++||+++..+..
T Consensus 342 ~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 342 MYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHcCCEEEEeCCC
Confidence 9999999999987654
No 141
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=49.91 E-value=1.7e+02 Score=25.26 Aligned_cols=147 Identities=9% Similarity=0.014 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
....++++.|.+.|+..|=.+++...... .+. ..+.+++ =+++...-+. ..+.+. ++..
T Consensus 16 ~~~~e~i~~A~~~Gl~~i~itdH~~~~~~-----~~~-~~~~~~~-------i~Il~GiEi~----~~~~~~----~~~~ 74 (237)
T PRK00912 16 DTVLRLISEASHLGYSGIALSNHSDKYPE-----SKP-ELEDLLG-------FEIFRGVEIV----ASNPSK----LRGL 74 (237)
T ss_pred chHHHHHHHHHHCCCCEEEEecCcccccc-----hhH-HHHHhcC-------CcEEeeEEEe----cCCHHH----HHHH
Confidence 56788999999999998887776532100 011 1112211 1233222221 123333 3333
Q ss_pred HHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCc---cHHHHHHHHHHHHhcCCCEEEEcccCCccCC
Q 023606 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKRGIPLASNQVNYSLIYR 231 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~ 231 (280)
+++. .+.+|++.+|.-+ + .....+.+.+.|.-||--.. ....-+.+++.+...++.+.++-.++ +..
T Consensus 75 ~~~~-~~~~d~v~v~~~~----~---~~~~~a~~~~~vdIi~hp~~~~~~~~~~~~~~~~a~~~gv~lEIn~s~~--~~~ 144 (237)
T PRK00912 75 VGKF-RKKVDVLAVHGGD----E---KVNRAACENPRVDILSHPYTKRKDSGINHVLAKEAARNNVAIEFNLRDI--LKS 144 (237)
T ss_pred HHhc-cCcccEEEEeCCC----H---HHHHHHHccCCCcEEeCccccCCCCCcCHHHHHHHHHCCeEEEEEchHh--hhh
Confidence 3332 2357888888211 2 22245778888887776532 11222344455555555555443321 111
Q ss_pred Cc--------chhhHHHHHHHcCCeEEEc
Q 023606 232 KP--------EENGVKAACDELGITLIAY 252 (280)
Q Consensus 232 ~~--------~~~~l~~~~~~~gi~i~a~ 252 (280)
.. ....++..|++.|++++.-
T Consensus 145 ~~~~r~~~~~~~~~~~~~~~~~g~piiis 173 (237)
T PRK00912 145 RGGRRARTLSNFRDNLALARKYDFPLVLT 173 (237)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 10 0125899999999988754
No 142
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=49.69 E-value=37 Score=33.07 Aligned_cols=107 Identities=9% Similarity=-0.012 Sum_probs=70.3
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHH-H--------HHHHHHHHHHhCCCcccEEEEecCCCCCchhHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS-V--------LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFI 180 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~-i--------~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~ 180 (280)
|.++..+-+..+.+ =+.++|+++-+|....-..... + +-.-.+.-+|+.+.|+|.+. .+.++++
T Consensus 142 eT~~~aark~f~~~-L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~ldeal 214 (545)
T TIGR01228 142 ETFAELARQHFGGS-LKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT------DSLDEAL 214 (545)
T ss_pred HHHHHHHHHhcCCC-CceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc------CCHHHHH
Confidence 66555555554433 2688999998875321111100 0 11224455788888998442 3578999
Q ss_pred HHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEE--EcccCC
Q 023606 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNYS 227 (280)
Q Consensus 181 ~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~--~q~~~n 227 (280)
+..++.+++|+..+||+-..-.+.++++++. ++.|++ .|...|
T Consensus 215 ~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r----~i~pDlvtDQTSaH 259 (545)
T TIGR01228 215 ARAEEAKAEGKPISIGLLGNAAEVLPELLKR----GVVPDVVTDQTSAH 259 (545)
T ss_pred HHHHHHHHcCCceEEEeeccHHHHHHHHHHc----CCCCCCcCCCCccc
Confidence 9999999999999999999888888888664 455544 566553
No 143
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=49.20 E-value=2.2e+02 Score=27.32 Aligned_cols=111 Identities=21% Similarity=0.207 Sum_probs=60.9
Q ss_pred EcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCC
Q 023606 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (280)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd 172 (280)
+..-.||. |+.|-++|++.....+.+-++|.|=+.. ..-.+.+..-+++.-++.+ +.++.++.+.
T Consensus 98 E~dvVfGg---------~~kL~~~I~e~~~~~~P~~I~V~ttC~~---~lIGdDi~~v~~e~~~~~~---~~vi~v~t~g 162 (456)
T TIGR01283 98 EKDVIFGG---------EKKLFHAIREIVERYHPPAVFVYSTCVP---GLIGDDLEAVCKAAAEKTG---IPVIPVDSEG 162 (456)
T ss_pred cCceEeCC---------HHHHHHHHHHHHHhCCCCEEEEECCChH---HHhcCCHHHHHHHHHHHhC---CCEEEEECCC
Confidence 34456785 8888888887665433456777766632 2333334444444334444 6788899887
Q ss_pred CCC-----chhHHHHHHHHH-H------------cCcccEEEecCc--cHHHHHHHHHHHHhcCCCEEE
Q 023606 173 IWG-----NEGFIDGLGDAV-E------------QGLVKAVGVSNY--SEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 173 ~~~-----~~~~~~~L~~lk-~------------~G~ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~ 221 (280)
... ...++++|-++. + .+.|--||-.+. +.+.|++++ +..|+++.+
T Consensus 163 f~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL---~~~Gl~v~~ 228 (456)
T TIGR01283 163 FYGSKNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNVAGEFWHVKPLL---EKLGIRVLA 228 (456)
T ss_pred CccchhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCCcccHHHHHHHH---HHcCCeEEE
Confidence 622 223444443322 1 356888885443 334555554 445665544
No 144
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=49.12 E-value=2.1e+02 Score=27.20 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=84.8
Q ss_pred HHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 023606 78 KAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (280)
Q Consensus 78 ~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~ 157 (280)
.+-=-+|+|-|+--+-||+ | ...+--++-..... -++++-++++ +..+ ...+..+|++
T Consensus 67 lE~RiAaLEGG~aa~a~aS----G--------~AA~~~ai~~la~a--GD~iVss~~L----YGGT----~~lf~~tl~~ 124 (426)
T COG2873 67 LEERIAALEGGVAALAVAS----G--------QAAITYAILNLAGA--GDNIVSSSKL----YGGT----YNLFSHTLKR 124 (426)
T ss_pred HHHHHHHhhcchhhhhhcc----c--------hHHHHHHHHHhccC--CCeeEeeccc----cCch----HHHHHHHHHh
Confidence 3334478899988777652 3 33344444444433 2778877787 4444 3667888999
Q ss_pred hCCCcccEEEEecCCCCCchhHHHHHHHHHHcCc----ccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCc
Q 023606 158 LGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP 233 (280)
Q Consensus 158 Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~----ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~ 233 (280)
+|+ ++-++...| .+.+++.+++.. +..||=-..+.-.++.+.+++.+++++..+...--.++
T Consensus 125 ~Gi---~v~fvd~~d-------~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpy---- 190 (426)
T COG2873 125 LGI---EVRFVDPDD-------PENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPY---- 190 (426)
T ss_pred cCc---EEEEeCCCC-------HHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcce----
Confidence 996 333433322 344555554421 22233223355677888888888888776643332222
Q ss_pred chhhHHHHHHHcCCeEEEcccC---------cCCCCCCCCCCCCC
Q 023606 234 EENGVKAACDELGITLIAYCPI---------AQGSKPRKRNWWFH 269 (280)
Q Consensus 234 ~~~~l~~~~~~~gi~i~a~spl---------~~G~L~~~~~~~~~ 269 (280)
+=-+-++|-.|+.+|.. -+|.+...-+++|.
T Consensus 191 -----l~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~ 230 (426)
T COG2873 191 -----LCRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWT 230 (426)
T ss_pred -----ecchhhcCCCEEEEeecccccCCccccceEEEeCCccccc
Confidence 22234678888877653 23445444455554
No 145
>PRK05414 urocanate hydratase; Provisional
Probab=49.10 E-value=40 Score=32.94 Aligned_cols=107 Identities=10% Similarity=-0.013 Sum_probs=70.3
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHH-HH--------HHHHHHHHHHhCCCcccEEEEecCCCCCchhHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ-SV--------LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFI 180 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~-~i--------~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~ 180 (280)
|.++..+-+....+ -+.++||++-+|....-.... .+ +-.-.+.-+|+.+.|+|.+. .+.++++
T Consensus 151 eT~~~a~rk~f~g~-L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~------~~Ldeal 223 (556)
T PRK05414 151 ETFAEAARQHFGGD-LAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA------DDLDEAL 223 (556)
T ss_pred HHHHHHHHHhcCCC-CceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc------CCHHHHH
Confidence 55555554544432 268899999887532111100 00 11224555788888998542 3578999
Q ss_pred HHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEE--EcccCC
Q 023606 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS--NQVNYS 227 (280)
Q Consensus 181 ~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~--~q~~~n 227 (280)
+..++.+++|+..+||+-..-.+.++++++. ++.|++ .|...|
T Consensus 224 ~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~----~i~pDlvtDQTSaH 268 (556)
T PRK05414 224 ALAEEAKAAGEPLSIGLLGNAADVLPELVRR----GIRPDLVTDQTSAH 268 (556)
T ss_pred HHHHHHHHcCCceEEEEeccHHHHHHHHHHc----CCCCCccCcCcccc
Confidence 9999999999999999999888888888664 455544 566653
No 146
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=49.03 E-value=2e+02 Score=25.71 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEccc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~ 96 (280)
.+.++..++++.-.+.|++.|+.+.
T Consensus 17 ~s~e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 17 IPTEDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 4557888899999999999999874
No 147
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=48.85 E-value=1.4e+02 Score=26.24 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=6.8
Q ss_pred HHHhCCCcccEEE
Q 023606 155 LFRLGLSSVELYQ 167 (280)
Q Consensus 155 l~~Lg~d~iDl~~ 167 (280)
|.++|+++|++-+
T Consensus 31 L~~~Gv~~iEvg~ 43 (263)
T cd07943 31 LDAAGVPLIEVGH 43 (263)
T ss_pred HHHcCCCEEEeec
Confidence 5555555555543
No 148
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=48.76 E-value=67 Score=28.89 Aligned_cols=56 Identities=7% Similarity=0.018 Sum_probs=36.3
Q ss_pred CccHHHHHHHHHHHHhcCCCEEEEcccCCcc---------C--CCcchhhHHHHHHHcCCeEEEccc
Q 023606 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLI---------Y--RKPEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~---------~--~~~~~~~l~~~~~~~gi~i~a~sp 254 (280)
+.+.+..++.+..|.+++++-..+--.+.-. . ....-.+|+++++++||+|+.|.-
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~ 94 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYH 94 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEe
Confidence 3477899999999999998766653333211 0 111223799999999999988753
No 149
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=48.23 E-value=2.3e+02 Score=27.27 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=56.2
Q ss_pred hHHHHHHHHhcccCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC---chhHHHH---
Q 023606 110 ETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG---NEGFIDG--- 182 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~---~~~~~~~--- 182 (280)
|+.|-++|++.....| .+-++|.+=+.. ..-.+.+..-+++.-++.+ .+.++.+|.|+... ..+...+
T Consensus 109 e~kL~~aI~e~~~~~p~p~~I~V~stC~~---~lIGDDi~~v~~e~~~~~~--~~pvv~v~t~gf~g~s~~~G~~~a~~a 183 (457)
T TIGR01284 109 EKKLKRCILEAFREFPEIKRMYTYATCTT---ALIGDDIDAIAREVMEEIP--DVDVFAINAPGFAGPSQSKGHHVANIT 183 (457)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCChH---HhhccCHHHHHHHHHHhcC--CCeEEEeeCCCcCCcccchHHHHHHHH
Confidence 8888888887654322 234666666532 2223334444444333332 26799999888733 2232222
Q ss_pred -HHHHH--------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEE
Q 023606 183 -LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (280)
Q Consensus 183 -L~~lk--------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (280)
++++. +.+.|--||-.++ +..++++.+..+..|+.+.
T Consensus 184 l~~~l~~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gl~v~ 229 (457)
T TIGR01284 184 WINDKVGTAEPEITTEYDVNLIGEYNI-QGDLWVLKKYFERMGIQVL 229 (457)
T ss_pred HHHHHhCccCcccCCCCeEEEEccCCc-hhhHHHHHHHHHHcCCeEE
Confidence 23333 1356888885554 3344555555556666654
No 150
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=48.14 E-value=2e+02 Score=27.19 Aligned_cols=94 Identities=15% Similarity=0.151 Sum_probs=59.2
Q ss_pred HHhCCCcccEEEEecCCC------CCchhHHHHHHHHHHc-CcccEEEec---CccHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 156 FRLGLSSVELYQLHWAGI------WGNEGFIDGLGDAVEQ-GLVKAVGVS---NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 156 ~~Lg~d~iDl~~lH~pd~------~~~~~~~~~L~~lk~~-G~ir~iGvS---~~~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
+.++ +|++.||..+. .+.+++.+..++..+. +.=--|+=| ..+++.++.+++.++- -++.++-..
T Consensus 150 ~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G--~kpLL~SAt 224 (389)
T TIGR00381 150 KEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEG--ERCLLASAN 224 (389)
T ss_pred HHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCC--CCcEEEecC
Confidence 4555 58888886443 2244677777766443 322333333 4589999999988652 145544333
Q ss_pred CCccCCCcchhhHHHHHHHcCCeEEEcccCcCCC
Q 023606 226 YSLIYRKPEENGVKAACDELGITLIAYCPIAQGS 259 (280)
Q Consensus 226 ~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~ 259 (280)
... ... .+.+.|+++|..+++++|..-|.
T Consensus 225 ~e~----Ny~-~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 225 LDL----DYE-KIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred chh----hHH-HHHHHHHHhCCeEEEEcCCcHHH
Confidence 221 122 58999999999999999887665
No 151
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=47.78 E-value=1.8e+02 Score=28.10 Aligned_cols=116 Identities=12% Similarity=0.119 Sum_probs=64.6
Q ss_pred cccccCCCCCCCCchhhHHHHHHHHhcccCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC----cccEEEE
Q 023606 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS----SVELYQL 168 (280)
Q Consensus 94 TA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d----~iDl~~l 168 (280)
..-.||. |+.|-++|++.....| .+-++|.|=+.. ..-.|.+..-+++.-+.++.+ .+.++.+
T Consensus 64 ~d~VfGG---------~~~L~~~I~~~~~~~~~p~~I~V~tTC~~---eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v 131 (454)
T cd01973 64 DSAVFGG---------AKRVEEGVLVLARRYPDLRVIPIITTCST---EIIGDDIEGVIRKLNEALKEEFPDREVHLIPV 131 (454)
T ss_pred CceEECc---------HHHHHHHHHHHHHhcCCCCEEEEECCchH---hhhccCHHHHHHHHHhhhhhccCCCCCeEEEe
Confidence 4457886 8888899987654322 244667776632 223333444444433333212 4789999
Q ss_pred ecCCCCC--chhHHHHHHHHHH--------cCcccEEEecCccHHHHHHHHHHHHhcCCCEEEE
Q 023606 169 HWAGIWG--NEGFIDGLGDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 169 H~pd~~~--~~~~~~~L~~lk~--------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~ 222 (280)
|.|+... ..+...+++.+.+ +++|--||-.+ ++..++++.+..+..++++.++
T Consensus 132 ~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~-~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 132 HTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWV-NPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCC-ChHHHHHHHHHHHHcCCCEEEe
Confidence 9988733 2344444444433 46677786442 3545555555566666665543
No 152
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=47.58 E-value=1.8e+02 Score=25.70 Aligned_cols=101 Identities=18% Similarity=0.093 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEE-EecCCC--CCchh----HHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHh
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQ-LHWAGI--WGNEG----FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~-lH~pd~--~~~~~----~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~ 214 (280)
.+.+.+.+..++.+ .-|.|.||+=. --+|+. .+.++ +...++.+++.-.+. +.+-+++++.++++++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~--- 95 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEA--- 95 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHh---
Confidence 34454444444443 44889999753 234543 23333 333456666553333 88899999999999886
Q ss_pred cCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 023606 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~sp 254 (280)
....+|-+ +....+ ..+++.++++|.+++.+..
T Consensus 96 --G~~iINdi--sg~~~~---~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 96 --GADIINDV--SGGSDD---PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred --CCCEEEeC--CCCCCC---hHHHHHHHHcCCCEEEECC
Confidence 23334322 333212 2589999999999999643
No 153
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=47.45 E-value=1.9e+02 Score=25.03 Aligned_cols=25 Identities=4% Similarity=0.036 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEccc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~ 96 (280)
.+.++..++++...+.|+..|+...
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~ 40 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGS 40 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc
Confidence 4568999999999999999999653
No 154
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=47.29 E-value=1.7e+02 Score=28.07 Aligned_cols=104 Identities=15% Similarity=0.221 Sum_probs=70.2
Q ss_pred HHHHHHHHCCCCeEEcccccC-CCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHH
Q 023606 79 AAFDTSLDNGITFFDTAEVYG-SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFR 157 (280)
Q Consensus 79 ~~l~~A~~~Gin~~DTA~~Yg-~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~ 157 (280)
.+|..+++.|- +-+.-.|| +|.- ...+++.|..... .++.-.+-+ ..+.+.+++.++++.+.
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~G------KTTlA~liA~~~~----~~f~~~sAv-----~~gvkdlr~i~e~a~~~ 99 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGTG------KTTLARLIAGTTN----AAFEALSAV-----TSGVKDLREIIEEARKN 99 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCCC------HHHHHHHHHHhhC----CceEEeccc-----cccHHHHHHHHHHHHHH
Confidence 47888888763 23344677 3444 7889999987652 344433333 46778899999999888
Q ss_pred hCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCc
Q 023606 158 LGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (280)
Q Consensus 158 Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~ 200 (280)
++...==++++.....+ +...-++|--.++.|.|..||.++-
T Consensus 100 ~~~gr~tiLflDEIHRf-nK~QQD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 100 RLLGRRTILFLDEIHRF-NKAQQDALLPHVENGTIILIGATTE 141 (436)
T ss_pred HhcCCceEEEEehhhhc-ChhhhhhhhhhhcCCeEEEEeccCC
Confidence 77544456666432221 2455678888899999999998863
No 155
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=47.23 E-value=2.7e+02 Score=26.79 Aligned_cols=154 Identities=14% Similarity=0.132 Sum_probs=81.8
Q ss_pred hhHHHHHHHHHHHHHC-CCCeEEcccccCCCCCCCCchhhHHHHHHHH-hcccCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIK-ERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~-~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (280)
.+.+...+.+...++. +-.. +-.|+.... ...=-+.+.+.+. ..+.....++|+|++=. ..
T Consensus 104 fp~~~~~~~~~~~~~~~~~~~---~~~y~~~~G--~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~------------q~ 166 (459)
T COG1167 104 FPLEALRRALARVLRNYGASL---ALQYGPTAG--LPELREAIAAYLLARRGISCEPEQIVITSGA------------QQ 166 (459)
T ss_pred CCHHHHHHHHHHHHhhcchhh---hhcCCCCCC--cHHHHHHHHHHHHHhcCCccCcCeEEEeCCH------------HH
Confidence 3446666677666653 3331 122332111 0000224444454 44443334567766543 34
Q ss_pred HHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecC----ccHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 150 ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~----~~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
+++-.++-| ++.=|.+.+-.|.. ..++.-++..| ++.++|.. .+++.+++.++. ..+++.++...
T Consensus 167 al~l~~~~l-~~pGd~v~vE~PtY------~~~~~~~~~~g-~~~~~vp~d~~G~~~e~le~~~~~---~~~k~~y~~P~ 235 (459)
T COG1167 167 ALDLLLRLL-LDPGDTVLVEDPTY------PGALQALEALG-ARVIPVPVDEDGIDPEALEEALAQ---WKPKAVYVTPT 235 (459)
T ss_pred HHHHHHHHh-CCCCCEEEEcCCCc------HHHHHHHHHcC-CcEEecCCCCCCCCHHHHHHHHhh---cCCcEEEECCC
Confidence 555444443 33458888888763 44444455555 67787764 457777777553 23455555443
Q ss_pred C----CccCCCcchhhHHHHHHHcCCeEEEcc
Q 023606 226 Y----SLIYRKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 226 ~----n~~~~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
+ -.......+..++++|+++++-||-=-
T Consensus 236 ~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD 267 (459)
T COG1167 236 FQNPTGVTMSLERRKALLALAEKYDVLIIEDD 267 (459)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHcCCeEEeeC
Confidence 3 222222223479999999999998543
No 156
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.04 E-value=1.7e+02 Score=28.18 Aligned_cols=97 Identities=13% Similarity=0.139 Sum_probs=68.7
Q ss_pred hhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHH---HHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHH
Q 023606 108 NSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA---ALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLG 184 (280)
Q Consensus 108 ~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~---~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~ 184 (280)
|+.+-+.+.|.+..... .+.+-|+.-- ..+++..+.. .+-.+|+++|+..-|-++++-|+ ..+++..+-
T Consensus 25 W~d~~l~d~L~~~A~~~-pdriAv~d~~----~~~sY~eLdqr~d~LAa~l~~lGi~~Gd~vlvQLpN---~~ef~~~~F 96 (542)
T COG1021 25 WQDRTLTDILTDHAARY-PDRIAVIDGE----RRLSYAELDQRADRLAAGLRRLGIKPGDTVLVQLPN---VAEFYITFF 96 (542)
T ss_pred ccCCcHHHHHHHHHhhc-CCceEEecCc----ccccHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCc---hHHHHHHHH
Confidence 44667788887765432 2555555432 3466666544 45668999999999999999875 367888888
Q ss_pred HHHHcCcccEEEecCccHHHHHHHHHHH
Q 023606 185 DAVEQGLVKAVGVSNYSEKRLRNAYEKL 212 (280)
Q Consensus 185 ~lk~~G~ir~iGvS~~~~~~i~~~~~~~ 212 (280)
.|.+.|-+--.-+-+|....|..+.+.+
T Consensus 97 ALlrlGv~PVlALpsHr~~Ei~~f~~~~ 124 (542)
T COG1021 97 ALLRLGVAPVLALPSHRASELGAFASQI 124 (542)
T ss_pred HHHHcCcchhhccchhhHHHHHHHHHhh
Confidence 8888888877777777776666666553
No 157
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=46.93 E-value=1.6e+02 Score=27.53 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=63.5
Q ss_pred EEEEecCCC------------CCchhHHHHHHHHHHcCcccEEEec-------CccHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~lk~~G~ir~iGvS-------~~~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
.+.||.|+. ++.++.+++.+...+... +.|-+= |-+.++.+++++..+ +++..++-++
T Consensus 215 AiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~--~~~~~VNLIP 291 (349)
T COG0820 215 AISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLK--GIPCKVNLIP 291 (349)
T ss_pred EEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhc--CCCceEEEee
Confidence 466788864 346778888877776544 444332 446788888877743 3566999999
Q ss_pred CCccCCCcchh-------hHHHHHHHcCCeEEEcccCc------CCCCCCCC
Q 023606 226 YSLIYRKPEEN-------GVKAACDELGITLIAYCPIA------QGSKPRKR 264 (280)
Q Consensus 226 ~n~~~~~~~~~-------~l~~~~~~~gi~i~a~spl~------~G~L~~~~ 264 (280)
||+......+. ...+...++||.+....+-+ +|.|..+.
T Consensus 292 ~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DIdaACGQL~~~~ 343 (349)
T COG0820 292 YNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDIDAACGQLRGKR 343 (349)
T ss_pred cCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccccccccccchhhhhh
Confidence 99987544221 24555667889988887654 45555544
No 158
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=46.76 E-value=1.1e+02 Score=29.62 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=59.5
Q ss_pred cccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC-----cccEEEEec
Q 023606 96 EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS-----SVELYQLHW 170 (280)
Q Consensus 96 ~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d-----~iDl~~lH~ 170 (280)
-.||. |+.|-++|++.....+.+-++|.|=+- .+-+-..++...+++..+ -+.++.++.
T Consensus 72 ~VfGg---------~~~L~~aI~~~~~~~~P~~I~V~ttC~-------~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~t 135 (455)
T PRK14476 72 TILGG---------DENVEEAILNICKKAKPKIIGLCTTGL-------TETRGDDVAGALKEIRARHPELADTPIVYVST 135 (455)
T ss_pred eEeCC---------HHHHHHHHHHHHHhhCCCEEEEeCcch-------HhhhhccHHHHHHHHHhhccccCCCeEEEecC
Confidence 47786 888888888765332235566665542 222333334443333322 367888998
Q ss_pred CCCCC--chhHHHHHHHHH------------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEE
Q 023606 171 AGIWG--NEGFIDGLGDAV------------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (280)
Q Consensus 171 pd~~~--~~~~~~~L~~lk------------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (280)
|+... ..+...+++.+. ++++|--||-+++++..++++.+..+..|+++.
T Consensus 136 pgF~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~ 199 (455)
T PRK14476 136 PDFKGALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPI 199 (455)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceE
Confidence 88732 233333332222 245688887555544445555555666666653
No 159
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=46.68 E-value=94 Score=26.10 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=25.7
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHH
Q 023606 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRL 205 (280)
Q Consensus 162 ~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i 205 (280)
.+|.++||..+. .+..+.+.+......++.+|+++++...+
T Consensus 73 ~~d~Vqlhg~e~---~~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 73 GLDVVQLHGDES---PEYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCCEEEECCCCC---HHHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 468899998642 23334443333346789999999765443
No 160
>PLN02363 phosphoribosylanthranilate isomerase
Probab=46.66 E-value=61 Score=28.79 Aligned_cols=65 Identities=15% Similarity=0.010 Sum_probs=41.2
Q ss_pred HHhCCCcccEEEEe-cCCCCCchhHHHHHHHHHHcCcccEEEec-CccHHHHHHHHHHHHhcCCCEEEEcccC
Q 023606 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (280)
Q Consensus 156 ~~Lg~d~iDl~~lH-~pd~~~~~~~~~~L~~lk~~G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (280)
.++|.|+|=+++.. .|...+.+.+-+....+ ....++.+||. +-+++.+.++++. ..++++|++-
T Consensus 64 ~~~GaD~iGfIf~~~SpR~Vs~e~a~~I~~~l-~~~~~~~VgVfv~~~~~~I~~~~~~-----~~ld~VQLHG 130 (256)
T PLN02363 64 VEAGADFIGMILWPKSKRSISLSVAKEISQVA-REGGAKPVGVFVDDDANTILRAADS-----SDLELVQLHG 130 (256)
T ss_pred HHcCCCEEEEecCCCCCCcCCHHHHHHHHHhc-cccCccEEEEEeCCCHHHHHHHHHh-----cCCCEEEECC
Confidence 45899999987533 23223334333333333 22236789986 6688888888775 5789999875
No 161
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=46.55 E-value=73 Score=27.12 Aligned_cols=74 Identities=27% Similarity=0.324 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEE
Q 023606 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 144 ~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~ 222 (280)
...+.+.+++.++.+|.+ +.++ .+...+.....+.++++.++| +..|=++..+++.+...++.+...++++..+
T Consensus 13 ~~~~~~g~~~~a~~~g~~---~~~~-~~~~~d~~~q~~~i~~~i~~~-~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 13 WQQVIKGAKAAAKELGYE---VEIV-FDAQNDPEEQIEQIEQAISQG-VDGIIVSPVDPDSLAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHHHHTCE---EEEE-EESTTTHHHHHHHHHHHHHTT-ESEEEEESSSTTTTHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCE---EEEe-CCCCCCHHHHHHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHhhcCceEEEE
Confidence 445788888889998863 2222 223345677888889998887 8888888777655555555566666765554
No 162
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=46.07 E-value=85 Score=25.20 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh--CCCcccEEEEecCCC-CCchhHHHHHHHHHHc
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRL--GLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQ 189 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~L--g~d~iDl~~lH~pd~-~~~~~~~~~L~~lk~~ 189 (280)
|=-+.|+-|++. -..+..+++.++++++.. .+...|++++..... .+..++.+.|.++.++
T Consensus 47 RlG~sVSKKvg~---AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 47 KVGITVSKKFGK---AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred eEEEEEeccccc---chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 677888889873 567778889999988876 345789999998765 3445555555555443
No 163
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=45.93 E-value=25 Score=32.02 Aligned_cols=164 Identities=15% Similarity=0.234 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHCCCC-eEEcccccCCCCCCCCchhhHHHHHHHH---hcccCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIK---ERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin-~~DTA~~Yg~g~~~~~~~sE~~lG~aL~---~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (280)
+...+++..|.+.|+. .||.=+.+-. +..+--+.+ ..... +..++++--.= -..+++.+.+.
T Consensus 92 ~~l~~i~~~A~~~~v~v~iDaE~~~~~---------~~~~~~~~~~~~~~~~~--~~~vg~tlQaY---L~~t~~~l~~l 157 (313)
T PF01619_consen 92 ERLRRICERAKEHGVFVLIDAEESWYQ---------DAILDLFLELMRKYNKG--WPNVGITLQAY---LKRTPDDLERL 157 (313)
T ss_dssp HHHHHHHHHHHHTTEEEEE----GGGH---------HHHHHHHHHHCCHHGTT----SEEEEEETT---BTTHHHHHHHH
T ss_pred HHHHHHHHHhhcCCcEEEEcCCCccch---------HHHHHHHHHHhhHhhCC--CCeEEEEEech---hhchHHHHHHH
Confidence 4577888999999988 6776554443 333333333 23222 45677666651 13445566666
Q ss_pred HHHHHHHhCCCcccEEEEe---------------cCCC------CCchhHHHHHHHHHHcCc-c--cEEEecCccHHHHH
Q 023606 151 LKDSLFRLGLSSVELYQLH---------------WAGI------WGNEGFIDGLGDAVEQGL-V--KAVGVSNYSEKRLR 206 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH---------------~pd~------~~~~~~~~~L~~lk~~G~-i--r~iGvS~~~~~~i~ 206 (280)
++.+-++ |. .+.+=++- ++++ ...+.....+..+..++. - -+++|.+|+...+.
T Consensus 158 ~~~a~~~-g~-~~~vRLVkGAY~e~E~~~a~~~g~~~~~~~~~k~~~d~~y~~~~~~l~~~~~~~~~~~~vATHn~~si~ 235 (313)
T PF01619_consen 158 LELARRR-GF-RLGVRLVKGAYLESERKRAQQHGYPDPPAFTDKATTDANYRRLARLLLEGGDAPKVYPMVATHNERSIA 235 (313)
T ss_dssp HHHHHHT-TS--EEEEEE--SSHHHHHHHHHHTTTSS-SB-SSHHHHHHHHHHHHHHHHCTTTT--EEEEEE---HHHHH
T ss_pred HHHHHHc-CC-eEEEEEecCCCCCchhHHHHHcCCCCCCCCCchhhhHHHHHHHHHHHhcccccceeeeeccCCCHHHHH
Confidence 6555542 21 12222221 1111 113345566655555544 3 69999999999999
Q ss_pred HHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCc
Q 023606 207 NAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (280)
Q Consensus 207 ~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~ 256 (280)
.+.+.++..++++.--+++|-.+.--.+ ++-....+.|..+..|.|+|
T Consensus 236 ~a~~l~~~~~~~~~~~~~efq~L~Gm~d--~l~~~L~~~g~~v~~YvP~G 283 (313)
T PF01619_consen 236 LALELAEELGIPPNDDRVEFQQLYGMAD--DLSRALAQAGYRVRKYVPYG 283 (313)
T ss_dssp HHHHHHHCTT-GG--GGEEEEEETTSSH--HHHHHHHHHTSEEEEEEEES
T ss_pred HHHHHHHHcCCCcccccEEeehhccCCH--HHHHHHHhCCCCEEEEEecC
Confidence 9999988877654222333333332222 47778888999999999987
No 164
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=45.91 E-value=2.2e+02 Score=25.36 Aligned_cols=25 Identities=4% Similarity=-0.021 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEccc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~ 96 (280)
.+.++..++...-.+.|+..||...
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~ 42 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWG 42 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccC
Confidence 3457777788888899999999874
No 165
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=45.65 E-value=99 Score=29.41 Aligned_cols=103 Identities=11% Similarity=0.128 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecC-----------------ccH
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-----------------YSE 202 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~-----------------~~~ 202 (280)
.+.+.+.+.+.+++-.+. =+|.+.+|.-- ..+.++.++++|++. |+-+ .=.
T Consensus 135 ~~mt~d~~~~~ie~qa~d----GVDfmTiH~Gi------~~~~~~~~~~~~R~~--giVSRGGs~~~~WM~~~~~ENPly 202 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAKD----GVDFMTIHAGV------LLEYVERLKRSGRIT--GIVSRGGAILAAWMLHHHKENPLY 202 (423)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEccch------hHHHHHHHHhCCCcc--CeecCcHHHHHHHHHHcCCcCchH
Confidence 457778888777777653 67999999732 578899999988554 3332 113
Q ss_pred HHHHHHHHHHHhcCCCEEEE--cccCCccCCCcch--------hhHHHHHHHcCCeEEEccc
Q 023606 203 KRLRNAYEKLKKRGIPLASN--QVNYSLIYRKPEE--------NGVKAACDELGITLIAYCP 254 (280)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~--q~~~n~~~~~~~~--------~~l~~~~~~~gi~i~a~sp 254 (280)
++++++++++++.++.++.= .=+-.+.|-...- -+|.+.|.++|++++.=.|
T Consensus 203 e~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGP 264 (423)
T TIGR00190 203 KNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGP 264 (423)
T ss_pred HHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 66777777766544322110 0000111111100 1567788888888887766
No 166
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=45.64 E-value=2.1e+02 Score=25.02 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhcCCCEEE
Q 023606 203 KRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~ 221 (280)
+.++++++.+...+.+..+
T Consensus 94 ~~~~~~i~~a~~lG~~~v~ 112 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQ 112 (284)
T ss_pred HHHHHHHHHHHHhCCCEEE
Confidence 4456666666666655444
No 167
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=45.33 E-value=2.4e+02 Score=25.76 Aligned_cols=79 Identities=15% Similarity=0.067 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCcccEEEecC----ccHHHH-HHHHHHHHhcCCCEEEEcccCC-ccCCCcchhhHHHHHHHcCCeEEEc
Q 023606 179 FIDGLGDAVEQGLVKAVGVSN----YSEKRL-RNAYEKLKKRGIPLASNQVNYS-LIYRKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 179 ~~~~L~~lk~~G~ir~iGvS~----~~~~~i-~~~~~~~~~~~~~~~~~q~~~n-~~~~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
+.+.++.+..-..++.+|+.+ ..+..+ +++++..+..+.+. +.++.+| +-....+..+.++.+++.|+.+...
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~-~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~q 239 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQT-VLVVHINHANEIDAEVADALAKLRNAGITLLNQ 239 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcE-EEEeeCCChHhCcHHHHHHHHHHHHcCCEEEec
Confidence 556666666666777777653 323322 23333333322222 2223443 1111122224677777788888877
Q ss_pred ccCcCC
Q 023606 253 CPIAQG 258 (280)
Q Consensus 253 spl~~G 258 (280)
+++..|
T Consensus 240 tvllkg 245 (321)
T TIGR03821 240 SVLLRG 245 (321)
T ss_pred ceeeCC
Confidence 777766
No 168
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.94 E-value=2.6e+02 Score=26.02 Aligned_cols=27 Identities=4% Similarity=0.117 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEccccc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVY 98 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Y 98 (280)
.+.++..++++.-.+.|++.|+....-
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~v 91 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSFV 91 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 456888889999999999999987543
No 169
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=44.84 E-value=1.8e+02 Score=25.02 Aligned_cols=124 Identities=12% Similarity=0.086 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHHC-----CCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHH
Q 023606 72 RKMKAAKAAFDTSLDN-----GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS 146 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~-----Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~ 146 (280)
.++++....++.+++. |+|.--.+-.-.+ +..+...++.... |.-+||=++... .
T Consensus 71 ~~~~~i~~~l~~al~~vp~a~GvnNhmGS~~T~~---------~~~m~~vl~~l~~---~gl~FvDS~T~~----~---- 130 (213)
T PF04748_consen 71 MSEEEIRKRLEAALARVPGAVGVNNHMGSRFTSD---------REAMRWVLEVLKE---RGLFFVDSRTTP----R---- 130 (213)
T ss_dssp S-HHHHHHHHHHHHCCSTT-SEEEEEE-CCHHC----------HHHHHHHHHHHHH---TT-EEEE-S--T----T----
T ss_pred CCHHHHHHHHHHHHHHCCCcEEEecCCCccccCC---------HHHHHHHHHHHHH---cCCEEEeCCCCc----c----
Confidence 5678999999999986 5554333333334 7888888877763 567777676632 1
Q ss_pred HHHHHHHHHHHhCCC--cccEEEEecCCCCCchhH-HHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCC
Q 023606 147 VLAALKDSLFRLGLS--SVELYQLHWAGIWGNEGF-IDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 147 i~~~l~~sl~~Lg~d--~iDl~~lH~pd~~~~~~~-~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~ 217 (280)
....+.-+++|+- .-|+|+=|..+....... -++....+++|.+-.||=..- +.+.+++.....+..++
T Consensus 131 --s~a~~~A~~~gvp~~~rdvfLD~~~~~~~I~~ql~~~~~~A~~~G~aI~Igh~~p~Tl~~L~~~~~~l~~~gi 203 (213)
T PF04748_consen 131 --SVAPQVAKELGVPAARRDVFLDNDQDEAAIRRQLDQAARIARKQGSAIAIGHPRPETLEALEEWLPELEAQGI 203 (213)
T ss_dssp ---SHHHHHHHCT--EEE-SEETTST-SHHHHHHHHHHHHHHHHCCSEEEEEEE-SCCHHHHHHHHHHHHHHCTE
T ss_pred --cHHHHHHHHcCCCEEeeceecCCCCCHHHHHHHHHHHHHhhhhcCcEEEEEcCCHHHHHHHHHHHhHHhhCCE
Confidence 1233444555543 234433233221112222 222333456787666664433 34555555554444443
No 170
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=44.77 E-value=1.8e+02 Score=26.88 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=50.9
Q ss_pred HHHHHhCCCcccEEEEe-cCCC--CCchhHHHHHHHHHHcCcccE-EEecCc---cHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 153 DSLFRLGLSSVELYQLH-WAGI--WGNEGFIDGLGDAVEQGLVKA-VGVSNY---SEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~lH-~pd~--~~~~~~~~~L~~lk~~G~ir~-iGvS~~---~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
+.-+.+|.|+||+-+.- .|+. ...+++...++...+.=.+-- |..|.. +++.++.+++.++.. ++.++-..
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~--~pLInSat 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGE--RCLLGSAE 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCC--CCEEEECC
Confidence 33456777777765432 2322 123334444444433322222 555532 678888888875421 24443332
Q ss_pred CCccCCCcchhhHHHHHHHcCCeEEEcccC
Q 023606 226 YSLIYRKPEENGVKAACDELGITLIAYCPI 255 (280)
Q Consensus 226 ~n~~~~~~~~~~l~~~~~~~gi~i~a~spl 255 (280)
.. ..+ .+.+.|+++|..+++.+|.
T Consensus 161 ~e-----n~~-~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 ED-----NYK-KIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred HH-----HHH-HHHHHHHHhCCeEEEEcHH
Confidence 11 122 5888888888888888754
No 171
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.37 E-value=1.4e+02 Score=27.76 Aligned_cols=104 Identities=17% Similarity=0.032 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC-chhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEE
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~-~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (280)
++.+ -+..+-+.|.++|+++|++-..-.|...+ ..+.-+.++.+++...++...+. .+.+.++.+++. +.+..
T Consensus 65 ~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~-~n~~die~A~~~----g~~~v 138 (347)
T PLN02746 65 VPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLT-PNLKGFEAAIAA----GAKEV 138 (347)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEc-CCHHHHHHHHHc----CcCEE
Confidence 3443 34456666999999999987655554322 22323334444443335555554 478888888764 22221
Q ss_pred EEcccCCc------cCCCcch-----hhHHHHHHHcCCeEEE
Q 023606 221 SNQVNYSL------IYRKPEE-----NGVKAACDELGITLIA 251 (280)
Q Consensus 221 ~~q~~~n~------~~~~~~~-----~~l~~~~~~~gi~i~a 251 (280)
.+-+.-|- +....++ .+++++++++|+.+.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 11111111 1111111 1578899999998853
No 172
>PRK09061 D-glutamate deacylase; Validated
Probab=44.34 E-value=3.2e+02 Score=26.77 Aligned_cols=115 Identities=13% Similarity=0.093 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
++..++++.|++.|...|=+...|-++.+ ...+-+.++... +.+..|......... .+......++++.
T Consensus 169 ~~m~~ll~~al~~Ga~gis~~~~y~p~~~------~~eL~~l~~~A~----~~g~~v~~H~e~~~~-~~~~~e~~av~~~ 237 (509)
T PRK09061 169 AEILELLEQGLDEGALGIGIGAGYAPGTG------HKEYLELARLAA----RAGVPTYTHVRYLSN-VDPRSSVDAYQEL 237 (509)
T ss_pred HHHHHHHHHHHHCCCCEEecCCccCCCCC------HHHHHHHHHHHH----HcCCEEEEEecCccc-CCchhHHHHHHHH
Confidence 44778899999999999987666654444 666666666654 356677777632100 1222233444444
Q ss_pred HHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcCcccEEEecCc
Q 023606 155 LFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~ 200 (280)
++.....-.-+.+.|--.. ....+.++.+++++++|.--..-++-|
T Consensus 238 i~lA~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~ 285 (509)
T PRK09061 238 IAAAAETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPY 285 (509)
T ss_pred HHHHHHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCc
Confidence 4333211233666675332 345777888899999885444444433
No 173
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=44.13 E-value=51 Score=28.24 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=42.1
Q ss_pred HHHhCCCcccEEEEe-cCCCCCchhHHHHHHHHHHcCcccEEEecC-ccHHHHHHHHHHHHhcCCCEEEEcccCC
Q 023606 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN-YSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH-~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~-~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (280)
+..+|.|++=+++.. .|...+.+.+-+....+ .+.++.+||.. -+++.+.++++. ..++++|++-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~-----~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVET-----VPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 346899999886432 23323333333333222 35689999884 488888888775 57899998753
No 174
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=44.08 E-value=1.2e+02 Score=27.85 Aligned_cols=54 Identities=26% Similarity=0.181 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEecC--CCCCchhHHHHHHHHHHcCcccEEEe
Q 023606 143 GRQSVLAALKDSLFRLGLSSVELYQLHWA--GIWGNEGFIDGLGDAVEQGLVKAVGV 197 (280)
Q Consensus 143 ~~~~i~~~l~~sl~~Lg~d~iDl~~lH~p--d~~~~~~~~~~L~~lk~~G~ir~iGv 197 (280)
-.+.+++..+...++||...+.+-+--.. ..+-...+-+.|++|.++| ++.|=+
T Consensus 205 Y~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v 260 (316)
T PF00762_consen 205 YPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVV 260 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEE
Confidence 34567788888888899876555555322 2245677899999999999 455443
No 175
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.00 E-value=1.4e+02 Score=30.60 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHc--CcccEEEecCccHHHHHHHHHHHH
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLK 213 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~--G~ir~iGvS~~~~~~i~~~~~~~~ 213 (280)
.+.+.+++-++.....-.....-+|+|+..+... ...+++|.+..|+ +.+++|.+++.....+..+.+.|+
T Consensus 104 ~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq 176 (700)
T PRK12323 104 RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-NHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCL 176 (700)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-HHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHH
Confidence 4566677766665544334456688888877543 4567788777777 889999999977666667766654
No 176
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=43.92 E-value=1.2e+02 Score=22.29 Aligned_cols=65 Identities=11% Similarity=-0.029 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhCCCcccEEEEecCCC-------CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHH
Q 023606 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (280)
Q Consensus 145 ~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-------~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~ 209 (280)
..-.+.+++..+++|.+-.++|+.-.+-. .+.+.+....-.+...|.++.-=+--++.+++.+++
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~~G~v~~et~~a~~~~e~~~~~ 90 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRSSGNVRTETLRAFPWDEFDEIV 90 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHcCCceEEEEEecCCHHHHHHHh
Confidence 34567888899999999999988865422 234556667778888898888777778888887764
No 177
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.91 E-value=1e+02 Score=26.77 Aligned_cols=88 Identities=8% Similarity=0.047 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHH----HcCcccEEEecCc-cHHHHHHHHHHHHhcCC
Q 023606 143 GRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAV----EQGLVKAVGVSNY-SEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 143 ~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk----~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~ 217 (280)
+.+...+. -+.|-+-|+..+.+=+ ..+...+.+++|+ ++.-=-.||..+. +.++++.+++. +-
T Consensus 25 ~~~~a~~~-~~al~~gGi~~iEiT~-------~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~a----GA 92 (222)
T PRK07114 25 DVEVAKKV-IKACYDGGARVFEFTN-------RGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQL----GA 92 (222)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEeC-------CCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHc----CC
Confidence 44444433 3345556765555332 2234555555554 3211146999887 88999988765 34
Q ss_pred CEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
.|.+- +.... +++++|+++||.++.
T Consensus 93 ~FiVs--------P~~~~-~v~~~~~~~~i~~iP 117 (222)
T PRK07114 93 NFIVT--------PLFNP-DIAKVCNRRKVPYSP 117 (222)
T ss_pred CEEEC--------CCCCH-HHHHHHHHcCCCEeC
Confidence 56541 22222 699999999998875
No 178
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.66 E-value=2.1e+02 Score=26.68 Aligned_cols=102 Identities=16% Similarity=0.101 Sum_probs=62.2
Q ss_pred cccE-EEEecCCC------C------CchhHHHHHHHHH-HcCc---ccEEEecCc--cHHHHHHHHHHHHhcCCCEEEE
Q 023606 162 SVEL-YQLHWAGI------W------GNEGFIDGLGDAV-EQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 162 ~iDl-~~lH~pd~------~------~~~~~~~~L~~lk-~~G~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~ 222 (280)
++|| +-||.+++ . +.+++++++.+.. +.|+ |+++=+.++ +.+.++++.+.+........++
T Consensus 208 ~v~LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~ieyvLIpGvNDs~e~a~~La~~l~~l~~~~~Vn 287 (348)
T PRK14467 208 EVNLAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIMLEYVLIKGVNDSPEDALRLAQLIGKNKKKFKVN 287 (348)
T ss_pred CeeEEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEECCccCCHHHHHHHHHHHhcCCCceEEE
Confidence 4454 45687765 1 2345556665444 3343 466666655 5788999988876432235677
Q ss_pred cccCCccCCC----cchh---hHHHHHHHcCCeEEEcccCc------CCCCCCC
Q 023606 223 QVNYSLIYRK----PEEN---GVKAACDELGITLIAYCPIA------QGSKPRK 263 (280)
Q Consensus 223 q~~~n~~~~~----~~~~---~l~~~~~~~gi~i~a~spl~------~G~L~~~ 263 (280)
-++||+.... +... ...+.++++|+.+......| +|.|..+
T Consensus 288 LIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~aaCGqL~~~ 341 (348)
T PRK14467 288 LIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRWSKGVDIFGACGQLRKK 341 (348)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCcchhhcccchhHh
Confidence 7999986532 2211 35566778899999987765 4666544
No 179
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=43.34 E-value=2.9e+02 Score=26.07 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=36.1
Q ss_pred HHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCC
Q 023606 183 LGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 183 L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G 258 (280)
++.+.+.+.++.+-+...+.+.++++++ .+.+..++..+-|+.-.-.+..++.++|+++|+.++.=...+.+
T Consensus 116 ~~~~~~~~g~~v~~v~~~d~~~l~~~i~----~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 116 FNALAKKGHFALITADLTDPRSLADALA----QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred HHHHHHhcCcEEEEECCCCHHHHHHhcC----cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 3333333334444444334555554432 12344555555555443333345777777777777766655443
No 180
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=43.25 E-value=69 Score=28.32 Aligned_cols=101 Identities=18% Similarity=0.268 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcCcccEEEecCc----cHHHHHHHHHHHHhcCCCEEE
Q 023606 148 LAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 148 ~~~l~~sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~----~~~~i~~~~~~~~~~~~~~~~ 221 (280)
...++..|+-.| +|||.+=+-|-.. .+.+-+-+.++-+++.|.--+.|=.-+ ....+++.++.++..+ |++
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lG--f~~ 100 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELG--FDA 100 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT---SE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcC--CCE
Confidence 466778888888 6999999988655 344445555555556665555552221 1244555555555543 555
Q ss_pred EcccCCccCCCcch-hhHHHHHHHcCCeEEE
Q 023606 222 NQVNYSLIYRKPEE-NGVKAACDELGITLIA 251 (280)
Q Consensus 222 ~q~~~n~~~~~~~~-~~l~~~~~~~gi~i~a 251 (280)
+.+.=..++...++ ..+++.+++.|..+++
T Consensus 101 IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 101 IEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp EEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred EEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 54444434433322 2467777777766553
No 181
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=43.14 E-value=2.7e+02 Score=26.91 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=60.2
Q ss_pred EcccccCCCCCCCCchhhHHHHHHHHhcccCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecC
Q 023606 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWA 171 (280)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~p 171 (280)
+..-.||. |+.|-++|++.....| .+-++|.|=+- ...-.+.+..-+++.-++.. -++++.+|.|
T Consensus 103 E~d~VfGg---------~~kL~~aI~~~~~~~~~p~~I~V~tTC~---~elIGDDi~~v~~~~~~~~~--~~~vi~v~tp 168 (461)
T TIGR01860 103 ESHVVFGG---------EKQLEKSIHEAFDEFPDIKRMIVYTTCP---TALIGDDIKAVAKKVQKELP--DVDIFTVECP 168 (461)
T ss_pred CCceeeCc---------HHHHHHHHHHHHHhCCCCCEEEEEccCc---hhhhcCCHHHHHHHHHHhcC--CCcEEEEeCC
Confidence 34456786 8888899987654332 24567777542 22333334444444333321 2589999998
Q ss_pred CCCC---chhHHHHH----HHH--------HHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 172 GIWG---NEGFIDGL----GDA--------VEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 172 d~~~---~~~~~~~L----~~l--------k~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
+..+ ..+...+. +++ +..+.|--||-.++ +..+.++.+..+..|+++.+
T Consensus 169 gf~g~s~~~G~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG~~~~-~gd~~el~~lL~~~Gi~v~~ 232 (461)
T TIGR01860 169 GFAGVSQSKGHHVLNIGWINEKVGTLEPEITSEYTINVIGDYNI-QGDTQVLQKYWDKMGIQVIA 232 (461)
T ss_pred CcCCcccchHHHHHHHHHHHHHhcccCCCCCCCCcEEEECCCCC-cccHHHHHHHHHHcCCcEEE
Confidence 8633 12222222 221 12467888884443 23344444445556666654
No 182
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=43.09 E-value=53 Score=32.54 Aligned_cols=55 Identities=24% Similarity=0.403 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCC
Q 023606 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G 258 (280)
..+++.++.+++.++++.+.-+.|.. |.+.+...+.++|+++|+.++....++.|
T Consensus 359 ~NL~RHIenvr~FGvPvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 359 ANLERHIENIRKFGVPVVVAINKFVT-DTDAEIAALKELCEELGVEVALSEVWAKG 413 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 56667777788888887776555533 33323335889999999999855555444
No 183
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=43.07 E-value=1.6e+02 Score=25.90 Aligned_cols=98 Identities=11% Similarity=0.178 Sum_probs=44.2
Q ss_pred HHHHHHHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcCcccEEEecCc-----cHHHHHHHHHHHHhcCCCEEE
Q 023606 149 AALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY-----SEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 149 ~~l~~sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~-----~~~~i~~~~~~~~~~~~~~~~ 221 (280)
+.++..|+-.| +|||.+=+-|-.. .+.+-+-+.++-+++.|.--+.| .++ ....+++.++.|+..+ |++
T Consensus 12 ~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lG--f~~ 87 (237)
T TIGR03849 12 KFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELG--FEA 87 (237)
T ss_pred HHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcC--CCE
Confidence 45666666666 4777777766443 22222333333344455444444 111 1233444444444332 444
Q ss_pred EcccCCccCCCcch-hhHHHHHHHcCCeEE
Q 023606 222 NQVNYSLIYRKPEE-NGVKAACDELGITLI 250 (280)
Q Consensus 222 ~q~~~n~~~~~~~~-~~l~~~~~~~gi~i~ 250 (280)
+.+.=..++...++ ..+++.++++|+.+.
T Consensus 88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 88 VEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 43333333322221 135555555555544
No 184
>PRK15108 biotin synthase; Provisional
Probab=42.98 E-value=1.7e+02 Score=27.13 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEe--cCCCCCchhHHHHHHHHHHcCcccEEEecC--ccHHHHHHHHH
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLH--WAGIWGNEGFIDGLGDAVEQGLVKAVGVSN--YSEKRLRNAYE 210 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH--~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~--~~~~~i~~~~~ 210 (280)
.+++.|.+.++. ...+|+..+ .+... .|...+.+.+.+.++.+|+.|. .+.+|+ .+.+.++++.+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i-~i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~Lke 144 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRF-CMGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLAN 144 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEE-EEEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHH
Confidence 455566665554 344666665 22222 2211233455555555565553 222332 34555555544
No 185
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=42.90 E-value=1.3e+02 Score=25.65 Aligned_cols=97 Identities=14% Similarity=-0.005 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHCCCC-----eEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 023606 75 KAAKAAFDTSLDNGIT-----FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin-----~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (280)
-.++-+.-+|+-+|++ |+=.+..|| |+..-+.+ ....+..+-.-+++.+... .+.+.....+
T Consensus 43 TAAlG~alRa~GhG~rv~vvQFiKg~~~~G----------E~~~~~~~-~~~v~~~~~~~g~tw~~~~--~~~d~~aa~~ 109 (198)
T COG2109 43 TAALGLALRALGHGLRVGVVQFIKGGWKYG----------EEAALEKF-GLGVEFHGMGEGFTWETQD--READIAAAKA 109 (198)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeecCcchh----------HHHHHHhh-ccceeEEecCCceeCCCcC--cHHHHHHHHH
Confidence 4566677777788876 566666666 55444443 1110000011122222210 1123456788
Q ss_pred HHHHHHHHhCCCcccEEEEecCCC------CCchhHHHHHH
Q 023606 150 ALKDSLFRLGLSSVELYQLHWAGI------WGNEGFIDGLG 184 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~pd~------~~~~~~~~~L~ 184 (280)
.++.+++.+.-...|+++|..... .+.+++++.|.
T Consensus 110 ~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~ 150 (198)
T COG2109 110 GWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLK 150 (198)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHh
Confidence 899999999999999999997553 45667666665
No 186
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=42.75 E-value=4.3e+02 Score=27.81 Aligned_cols=98 Identities=12% Similarity=0.156 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHc--CcccEEEecCccHHHHHHHHHHHHhcCCCE
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNYSEKRLRNAYEKLKKRGIPL 219 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~--G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~ 219 (280)
.+.+.+++-.+.+...--....-+|+|+..+... .+..++|.+..++ ..+.+|-+++.....+..+.+.
T Consensus 100 ~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR-------- 170 (824)
T PRK07764 100 GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-PQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR-------- 170 (824)
T ss_pred CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-HHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh--------
Confidence 4556666654444333223456788888877543 4678888888888 8899999886433322233222
Q ss_pred EEEcccCCccCCCcchhhHHHHHHHcCCeE
Q 023606 220 ASNQVNYSLIYRKPEENGVKAACDELGITL 249 (280)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i 249 (280)
+..++|..+....-..-|.+.|++.|+.+
T Consensus 171 -c~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 171 -THHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred -eeEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 22344545433221112455666667653
No 187
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=42.68 E-value=2.1e+02 Score=26.68 Aligned_cols=98 Identities=15% Similarity=0.090 Sum_probs=65.1
Q ss_pred EEEEecCCC------------CCchhHHHHHHHHHHc--Cc--ccEEEec--CccHHHHHHHHHHHHhcCCCEEEEcccC
Q 023606 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQ--GL--VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (280)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~lk~~--G~--ir~iGvS--~~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (280)
.+.||.|+. ++.+++++++.+..+. ++ +-|+=+. |.+.+.+.++.+.++ +++..++-++|
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~--~~~~~VNLIp~ 287 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLR--GIDCRVNLIRF 287 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHc--CCCceEEEEec
Confidence 578898765 3457888888876543 22 2344444 457888999988865 35678888999
Q ss_pred CccCCC----cch---hhHHHHHHHcCCeEEEcccCc------CCCCCCCC
Q 023606 227 SLIYRK----PEE---NGVKAACDELGITLIAYCPIA------QGSKPRKR 264 (280)
Q Consensus 227 n~~~~~----~~~---~~l~~~~~~~gi~i~a~spl~------~G~L~~~~ 264 (280)
|+.... +.. ....+..+++|+.+......| +|.|..+.
T Consensus 288 Np~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI~aACGQL~~~~ 338 (345)
T PRK14466 288 HAIPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDIFAACGMLSTAK 338 (345)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccchhhh
Confidence 975431 111 135666788999999887765 47776543
No 188
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=42.60 E-value=2.1e+02 Score=26.11 Aligned_cols=40 Identities=23% Similarity=0.261 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCcc--cEEEecCccHHHHH-------------HHHHHHHhcCCCE
Q 023606 180 IDGLGDAVEQGLV--KAVGVSNYSEKRLR-------------NAYEKLKKRGIPL 219 (280)
Q Consensus 180 ~~~L~~lk~~G~i--r~iGvS~~~~~~i~-------------~~~~~~~~~~~~~ 219 (280)
-+.|+.|++.|.- -.||+=+.+.+.++ ++++.++..++.+
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v 171 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGAGV 171 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcE
Confidence 4566667788873 67888776665553 5666666666653
No 189
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=42.59 E-value=1.5e+02 Score=27.64 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEe-cCCC------------CCchh-----HHHHHHHHHHcCcccEEEecCcc
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI------------WGNEG-----FIDGLGDAVEQGLVKAVGVSNYS 201 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH-~pd~------------~~~~~-----~~~~L~~lk~~G~ir~iGvS~~~ 201 (280)
...+.+.+++.++..++ |+.++|.+|.+. .|.. .+.++ ...+.+.|.+.|. .++++|+|.
T Consensus 165 Pgqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 242 (370)
T PRK06294 165 PTQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYA 242 (370)
T ss_pred CCCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-Ceeeeeeee
Confidence 45788888888888764 899999999886 3321 11122 1224456777786 567888885
No 190
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=42.39 E-value=2.4e+02 Score=24.79 Aligned_cols=106 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEE-EEecCCC------CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHh
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELY-QLHWAGI------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK 214 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~-~lH~pd~------~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~ 214 (280)
.+.+.+.+..++.+ .-|.|.||+= .--+|+. ...+.+...++.+++.-.+. |.+-+++++.++.+++.
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~--- 95 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKA--- 95 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHh---
Q ss_pred cCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCC
Q 023606 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGS 259 (280)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~ 259 (280)
....+|-+..--.+ + ++++.++++|.+++.+..-+.|.
T Consensus 96 --g~~iINdis~~~~~---~--~~~~l~~~~~~~vV~m~~~~~~~ 133 (258)
T cd00423 96 --GADIINDVSGGRGD---P--EMAPLAAEYGAPVVLMHMDGTPQ 133 (258)
T ss_pred --CCCEEEeCCCCCCC---h--HHHHHHHHcCCCEEEECcCCCCc
No 191
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=42.33 E-value=55 Score=31.57 Aligned_cols=107 Identities=10% Similarity=-0.034 Sum_probs=69.7
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHH-------H--HHHHHHHHHHhCCCcccEEEEecCCCCCchhHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQS-------V--LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFI 180 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~-------i--~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~ 180 (280)
|.++..+-+....+- +.+++|+.-+|.......... | +-+-.+.-+||.+.|+|.. ..+.++++
T Consensus 151 eT~~~~~r~h~~gdL-~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~------a~~ldeAl 223 (561)
T COG2987 151 ETFAEAGRQHFGGDL-KGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI------AETLDEAL 223 (561)
T ss_pred HHHHHHHHHhcCCCc-cceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh------cCCHHHHH
Confidence 555555555554432 688999988875211111110 0 1112334478888999832 14578899
Q ss_pred HHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEE--cccCC
Q 023606 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASN--QVNYS 227 (280)
Q Consensus 181 ~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~--q~~~n 227 (280)
...++..++|+-.+||+-..-.+.+.++++. ++.|+++ |...|
T Consensus 224 ~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r----~~~pD~vtDQTsaH 268 (561)
T COG2987 224 ALAEEATAAGEPISIGLLGNAAEILPELLRR----GIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHhcCCceEEEEeccHHHHHHHHHHc----CCCCceeccccccc
Confidence 9999999999999999999888888888664 5666664 55544
No 192
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=42.27 E-value=3.7e+02 Score=27.02 Aligned_cols=132 Identities=9% Similarity=0.048 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEc--------ccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCC-CCCCC
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDT--------AEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LPWRL 142 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DT--------A~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~-~~~~~ 142 (280)
.+.++...+....-+.|+..++. +.-|-+ +. +...=+.|++.. ++-.+........ ..|..
T Consensus 24 ~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~-e~------p~e~lr~l~~~~---~~~~lqml~Rg~n~vg~~~ 93 (593)
T PRK14040 24 LRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLG-ED------PWERLRELKKAM---PNTPQQMLLRGQNLLGYRH 93 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccC-CC------HHHHHHHHHHhC---CCCeEEEEecCcceecccc
Confidence 44467777777777789998887 122222 22 333335555544 2344444333211 11333
Q ss_pred CHHHH-HHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc--EEEe---cCccHHHHHHHHHHHHhcC
Q 023606 143 GRQSV-LAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK--AVGV---SNYSEKRLRNAYEKLKKRG 216 (280)
Q Consensus 143 ~~~~i-~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir--~iGv---S~~~~~~i~~~~~~~~~~~ 216 (280)
-++.+ +..++. ....|+|.+-++- +. .+.+.+..+++..|+.|+.- .|.. .-|+.+.+.++++.+...+
T Consensus 94 ypddvv~~~v~~-a~~~Gid~~rifd-~l---nd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~G 168 (593)
T PRK14040 94 YADDVVERFVER-AVKNGMDVFRVFD-AM---NDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMG 168 (593)
T ss_pred CcHHHHHHHHHH-HHhcCCCEEEEee-eC---CcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcC
Confidence 34443 333443 3445665555542 10 23456667777778888743 2222 2345566666666555544
Q ss_pred CC
Q 023606 217 IP 218 (280)
Q Consensus 217 ~~ 218 (280)
..
T Consensus 169 ad 170 (593)
T PRK14040 169 VD 170 (593)
T ss_pred CC
Confidence 43
No 193
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=41.82 E-value=90 Score=30.79 Aligned_cols=94 Identities=14% Similarity=0.130 Sum_probs=54.3
Q ss_pred eEEcccccCCCCCCCC-chhhH-----HHHHHHHhcccCCCCCcEEEEecCCCC---------CCCCCH----HHHHHHH
Q 023606 91 FFDTAEVYGSRASFGA-INSET-----LLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGR----QSVLAAL 151 (280)
Q Consensus 91 ~~DTA~~Yg~g~~~~~-~~sE~-----~lG~aL~~~~~~~~R~~~~I~tK~~~~---------~~~~~~----~~i~~~l 151 (280)
+++|+..|-+|.. |. |.... .+.++++..+ .+++..+=.-.. ....++ +...+.+
T Consensus 6 ~i~~~~py~ng~~-HiGH~~~~~~~~D~~~R~~r~~G-----~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~ 79 (556)
T PRK12268 6 LITSAWPYANGPL-HLGHLAGSGLPADVFARYQRLKG-----NEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEH 79 (556)
T ss_pred EEecCCCCCCCCc-cccccccchhHHHHHHHHHHhcC-----CceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6788888877654 33 33333 4455554433 345544433110 011223 4457788
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcc
Q 023606 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~i 192 (280)
.+.+++||++ .|.+.-. .++.-.+.+.+.+++|.++|.|
T Consensus 80 ~~~~~~l~i~-~d~~~~t-~~~~~~~~~~~~~~~L~~~G~~ 118 (556)
T PRK12268 80 KEDFKKLGIS-YDLFTRT-TSPNHHEVVQEFFLKLYENGYI 118 (556)
T ss_pred HHHHHHcCCc-CCCCcCC-CCHHHHHHHHHHHHHHHHCCCe
Confidence 8999999996 4743211 1112256788899999999987
No 194
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=41.80 E-value=2.2e+02 Score=26.29 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEec-CCC---------CCchhH-HHHHHHHHHcCcccEEEecCccH
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI---------WGNEGF-IDGLGDAVEQGLVKAVGVSNYSE 202 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~-pd~---------~~~~~~-~~~L~~lk~~G~ir~iGvS~~~~ 202 (280)
...+.+.+++.++..+ +++.+++.++.+.- |.. .+.++. ..+.+.|.+.|. ..+++|+|..
T Consensus 160 Pgqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 160 PLDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 3577888888887755 58999999888753 321 111222 333566667785 5788888753
No 195
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=41.68 E-value=81 Score=30.90 Aligned_cols=104 Identities=14% Similarity=0.090 Sum_probs=61.0
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHH------------HHHHHHHHHHhCCCcccEEEEecCCCCCch
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV------------LAALKDSLFRLGLSSVELYQLHWAGIWGNE 177 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i------------~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~ 177 (280)
|.++..+-+....+ -+.++||++=+|... ..+-+ +-.-.+.-+|+.+.|+|.+. .+.+
T Consensus 141 eT~~~aark~~g~~-L~Gk~~lTaGLGGMg---GAQplA~~m~g~v~l~vEvd~~ri~kR~~~g~ld~~~------~~ld 210 (546)
T PF01175_consen 141 ETFLNAARKHFGGD-LAGKLFLTAGLGGMG---GAQPLAATMAGGVGLIVEVDPSRIEKRLEQGYLDEVT------DDLD 210 (546)
T ss_dssp HHHHHHHHHHSTTS--TT-EEEEE--STTC---CHHHHHHHHTT-EEEEEES-HHHHHHHHHTTSSSEEE------SSHH
T ss_pred HHHHHHHHHhcCCC-CcceEEEEecccccc---cchHHHHHhcCceEEEEEECHHHHHHHHhCCCeeEEc------CCHH
Confidence 44444444444433 378999999988521 11111 11224555778888998543 3578
Q ss_pred hHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCC--EEEEcccCC
Q 023606 178 GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYS 227 (280)
Q Consensus 178 ~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~--~~~~q~~~n 227 (280)
++++..++.+++|+..+||+-..-.+.++++++. ++. +...|...|
T Consensus 211 ea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~----~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 211 EALARAKEARAKKEPLSIGLLGNAADLWEELVER----GIIPDLVTDQTSAH 258 (546)
T ss_dssp HHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHT----T---SEE---SSTT
T ss_pred HHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHc----CCCCCcccCCCccc
Confidence 9999999999999999999999888888888654 444 555677664
No 196
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=41.65 E-value=2.4e+02 Score=24.57 Aligned_cols=156 Identities=18% Similarity=0.236 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHCCCCeEEcccccCC---CCCCCCchhhHHHHHHHH---hcccCCCCC-cEEEEecCCCCCCCCCHHHHH
Q 023606 76 AAKAAFDTSLDNGITFFDTAEVYGS---RASFGAINSETLLGRFIK---ERKQRDPEV-EVTVATKFAALPWRLGRQSVL 148 (280)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~---g~~~~~~~sE~~lG~aL~---~~~~~~~R~-~~~I~tK~~~~~~~~~~~~i~ 148 (280)
...+++..|.+.|+..|-+.++... +.. ++.+-...+ ..... .+ ++++-.-+...+ +...
T Consensus 17 ~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~------~~~~~~~~~~~~~~~~~--~~i~i~~G~E~~~~~-----~~~~ 83 (237)
T COG1387 17 TPEEMVEAAIELGLEYIAITDHAPFLRVGLD------AELLKYFIEEIRELKKE--YDIKILIGIEVDILP-----DGSL 83 (237)
T ss_pred CHHHHHHHHHHcCCeEEEEeccccccccCCC------HHHHHHHHHHHHHHHHh--cCceEEEeEEEEecC-----CCCc
Confidence 3445699999999999998887766 444 444444433 22211 12 122222221111 1111
Q ss_pred HHHHHHHHHhCCCcccEEEEecC--CCCCchhHHHHHHHHHHcCcccEEEecCc----------cHHHHHHHHHHHHhcC
Q 023606 149 AALKDSLFRLGLSSVELYQLHWA--GIWGNEGFIDGLGDAVEQGLVKAVGVSNY----------SEKRLRNAYEKLKKRG 216 (280)
Q Consensus 149 ~~l~~sl~~Lg~d~iDl~~lH~p--d~~~~~~~~~~L~~lk~~G~ir~iGvS~~----------~~~~i~~~~~~~~~~~ 216 (280)
...+..+..|+ + =+..+|.+ .........+.+..+...+.|.-||=-+. ....+++.++.+...+
T Consensus 84 d~~~~~~~~lD--~-vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 160 (237)
T COG1387 84 DFLDEILKELD--Y-VIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG 160 (237)
T ss_pred ccchhhHhhcC--E-EEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC
Confidence 22223333322 1 24556886 33556778888888999888877774433 2356777777788777
Q ss_pred CCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 217 IPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 217 ~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
..+.++--+ .-++. ...++..|++.|+.+.-
T Consensus 161 ~aleins~~-~~~~~---~~~~~~~~~e~G~~~~i 191 (237)
T COG1387 161 KALEINSRP-GRLDP---NSEILRLARELGVKLAI 191 (237)
T ss_pred cEEeecCCc-CccCc---hHHHHHHHHHhCCeEEe
Confidence 666654331 11111 12589999999987754
No 197
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=41.52 E-value=1.3e+02 Score=28.82 Aligned_cols=45 Identities=9% Similarity=0.168 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccE
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA 194 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~ 194 (280)
.+.+.+.+.+.+++-.+. =+|.+.+|.-- ..+.++.++++|++..
T Consensus 138 ~~mt~d~~~~~ie~qa~~----GVDfmTiHcGi------~~~~~~~~~~~~R~~g 182 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAKD----GVDFMTIHCGV------TRETLERLKKSGRIMG 182 (431)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEccch------hHHHHHHHHhcCCccC
Confidence 357788888877777664 67999999732 5788899999885543
No 198
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=41.01 E-value=64 Score=30.51 Aligned_cols=70 Identities=11% Similarity=-0.021 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHcCc--c-cEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 023606 178 GFIDGLGDAVEQGL--V-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 178 ~~~~~L~~lk~~G~--i-r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
+-++.+.+|++.-. | -..|-+.++...++++++. -.++++|....-+---.+-..+.+.|+.+|+.++.+
T Consensus 246 ~d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~-----~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 246 DDYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEM-----GCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred ccHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHc-----CCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 34677778887644 2 2336777788888888765 357888877665432223336899999999999876
No 199
>PRK08508 biotin synthase; Provisional
Probab=41.01 E-value=2.3e+02 Score=25.30 Aligned_cols=76 Identities=12% Similarity=0.058 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCcccEEE-----------e-cCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCC
Q 023606 180 IDGLGDAVEQGLVKAVG-----------V-SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (280)
Q Consensus 180 ~~~L~~lk~~G~ir~iG-----------v-S~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi 247 (280)
-+.|++|++.|.-+.-+ + ++++++...+.++.+++.++++.. -+-+-+.+...+..+.+.+.++.+.
T Consensus 102 ~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~s-g~I~GlGEt~ed~~~~l~~lr~L~~ 180 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCS-GGIFGLGESWEDRISFLKSLASLSP 180 (279)
T ss_pred HHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecc-eeEEecCCCHHHHHHHHHHHHcCCC
Confidence 66788888888744331 2 246677777777777776664433 2223344433333356777788887
Q ss_pred eEEEcccCc
Q 023606 248 TLIAYCPIA 256 (280)
Q Consensus 248 ~i~a~spl~ 256 (280)
.-+.+.+|.
T Consensus 181 ~svpl~~~~ 189 (279)
T PRK08508 181 HSTPINFFI 189 (279)
T ss_pred CEEeeCCcC
Confidence 766666653
No 200
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.77 E-value=3.1e+02 Score=25.58 Aligned_cols=159 Identities=17% Similarity=0.121 Sum_probs=88.5
Q ss_pred CCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccC-C---CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcc
Q 023606 88 GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQR-D---PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSV 163 (280)
Q Consensus 88 Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~-~---~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~i 163 (280)
|.+.++.--.-|.|+..-+ -+.+-++++..... + ....+.|+|=. . . ..++ -|...+...+
T Consensus 152 g~~~i~nIvfmGmGEPLln---~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G----~---~----~~i~-~L~~~~l~~L 216 (354)
T PRK14460 152 DHPILRNLVFMGMGEPLLN---LDEVMRSLRTLNNEKGLNFSPRRITVSTCG----I---E----KGLR-ELGESGLAFL 216 (354)
T ss_pred CCcceeEEEEecCCcccCC---HHHHHHHHHHHhhhhccCCCCCeEEEECCC----C---h----HHHH-HHHhCCCcEE
Confidence 3333555555566654222 24455666654310 0 11356777744 1 1 2233 3445555444
Q ss_pred cEEEEecCCC------------CCchhHHHHHHHHHHc-Cc---ccEEEec--CccHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 164 ELYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVS--NYSEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 164 Dl~~lH~pd~------------~~~~~~~~~L~~lk~~-G~---ir~iGvS--~~~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
++ .||.+++ ++.+++++++.+..++ |. |+++=+. |.+.+.++++.+.+.. .+..++-++
T Consensus 217 ~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~--~~~~VnLIp 293 (354)
T PRK14460 217 AV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSR--TKCKLNLIV 293 (354)
T ss_pred EE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhc--CCCcEEEEc
Confidence 43 5777665 2356677777665433 22 3344444 4467888888888764 345678889
Q ss_pred CCccCCCc----chh---hHHHHHHHcCCeEEEcccCc------CCCCCCCC
Q 023606 226 YSLIYRKP----EEN---GVKAACDELGITLIAYCPIA------QGSKPRKR 264 (280)
Q Consensus 226 ~n~~~~~~----~~~---~l~~~~~~~gi~i~a~spl~------~G~L~~~~ 264 (280)
||+....+ ... ...+..+++|+.+......| +|.|..++
T Consensus 294 yn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~di~aaCGqL~~~~ 345 (354)
T PRK14460 294 YNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQDIKAACGQLKAEE 345 (354)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCchHhccccchhhh
Confidence 99864322 111 35667788899998887764 47776654
No 201
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=40.73 E-value=1.6e+02 Score=24.30 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=56.7
Q ss_pred EEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCc----chhhHHHH
Q 023606 166 YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKP----EENGVKAA 241 (280)
Q Consensus 166 ~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~----~~~~l~~~ 241 (280)
+++..|.....+++++..-+--++.-|++|=|.+-+-+...++++.+..+ +++.+ +.||.-...+ .+.++-+.
T Consensus 2 ~yf~~pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~-lkvVv--Vthh~Gf~e~g~~e~~~E~~~~ 78 (186)
T COG1751 2 VYFEKPGKENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGD-LKVVV--VTHHAGFEEKGTQEMDEEVRKE 78 (186)
T ss_pred ccccCCcccchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccC-ceEEE--EEeecccccCCceecCHHHHHH
Confidence 34455554445666666555556666999999888888888888775422 33444 3444332222 12368889
Q ss_pred HHHcCCeEEEcccCcCCC
Q 023606 242 CDELGITLIAYCPIAQGS 259 (280)
Q Consensus 242 ~~~~gi~i~a~spl~~G~ 259 (280)
.+++|..++.-|---.|.
T Consensus 79 L~erGa~v~~~sHalSg~ 96 (186)
T COG1751 79 LKERGAKVLTQSHALSGV 96 (186)
T ss_pred HHHcCceeeeehhhhhcc
Confidence 999999998776544443
No 202
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=40.69 E-value=1.3e+02 Score=27.17 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=50.8
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHcCcc-cEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHH
Q 023606 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (280)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~lk~~G~i-r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (280)
.++.++-.|-+ .. +.+.+|++.-.+ -..|=|-++...+.++++. ...+++|+....+-.-.+-..+.+.
T Consensus 183 ~~i~~iEqP~~--~~---~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~-----~~~d~i~ik~~~~GGi~~~~~i~~~ 252 (307)
T TIGR01927 183 GRIAFLEEPLP--DA---DEMSAFSEATGTAIALDESLWELPQLADEYGP-----GWRGALVIKPAIIGSPAKLRDLAQK 252 (307)
T ss_pred CCceEEeCCCC--CH---HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhc-----CCCceEEECchhcCCHHHHHHHHHH
Confidence 45555555432 11 566666655332 4555556677777777553 2355555555443221222358999
Q ss_pred HHHcCCeEEEcccCcCCC
Q 023606 242 CDELGITLIAYCPIAQGS 259 (280)
Q Consensus 242 ~~~~gi~i~a~spl~~G~ 259 (280)
|+.+||.++..+.+..|.
T Consensus 253 a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 253 AHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHcCCCEEEECccchHH
Confidence 999999999877666554
No 203
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=40.57 E-value=23 Score=26.65 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=9.7
Q ss_pred hHHHHHHHcCCeEEEccc
Q 023606 237 GVKAACDELGITLIAYCP 254 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~sp 254 (280)
.+.++|+++|+.+...+.
T Consensus 37 ~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 37 RIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHhCCCEEecCC
Confidence 355566666666665553
No 204
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=40.51 E-value=2.6e+02 Score=24.77 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHH--HHHHHH-hcccCCCCCcE-EEEecCCCCCCCCCHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETL--LGRFIK-ERKQRDPEVEV-TVATKFAALPWRLGRQSVLA 149 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~--lG~aL~-~~~~~~~R~~~-~I~tK~~~~~~~~~~~~i~~ 149 (280)
.+...+.++.--+.|..+|..++.-+.... +.. ++..|+ ..+. +-+ .++. .+.++..+..
T Consensus 14 ~~~l~~~~~~l~~~~pd~isvT~~~~~~~~------~~t~~~a~~l~~~~g~----~~i~Hlt~------r~~n~~~l~~ 77 (272)
T TIGR00676 14 EENLWETVDRLSPLDPDFVSVTYGAGGSTR------DRTVRIVRRIKKETGI----PTVPHLTC------IGATREEIRE 77 (272)
T ss_pred HHHHHHHHHHHhcCCCCEEEeccCCCCCcH------HHHHHHHHHHHHhcCC----CeeEEeee------cCCCHHHHHH
Confidence 356666666666788999998876553222 333 333444 2221 111 1222 3467777777
Q ss_pred HHHHHHHHhCCCcccEEEEec-CC------C-CCchhHHHHHHHHHHcCcccEEEecCcc--------H-HHHHHHHHHH
Q 023606 150 ALKDSLFRLGLSSVELYQLHW-AG------I-WGNEGFIDGLGDAVEQGLVKAVGVSNYS--------E-KRLRNAYEKL 212 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~-pd------~-~~~~~~~~~L~~lk~~G~ir~iGvS~~~--------~-~~i~~~~~~~ 212 (280)
.+... ..+|++ +++.|-. +. . .+.....+-++.+++..--.+||+..++ . +.++.+.+-.
T Consensus 78 ~L~~~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~ 154 (272)
T TIGR00676 78 ILREY-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKV 154 (272)
T ss_pred HHHHH-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 77755 677754 3444433 21 1 1123466666666664223688887742 1 3344444432
Q ss_pred HhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeE
Q 023606 213 KKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (280)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i 249 (280)
+ .|..+.+-|.-|+.-. .. .+++.|++.|+.+
T Consensus 155 ~-aGA~f~iTQ~~fd~~~---~~-~~~~~~~~~gi~~ 186 (272)
T TIGR00676 155 D-AGADYAITQLFFDNDD---YY-RFVDRCRAAGIDV 186 (272)
T ss_pred H-cCCCeEeeccccCHHH---HH-HHHHHHHHcCCCC
Confidence 2 2456888888886621 22 4788899997654
No 205
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=40.29 E-value=1.5e+02 Score=25.67 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
.++++..++.+.+.+.|..|+=|+.-|+.+.+ +.+.+-...+..+ .++- .|... .-.+.+...+-+
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~ga-----t~~~v~~m~~~~~-----~~~~--IKasG--GIrt~~~a~~~i 198 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGA-----TVEDVKLMRETVG-----PRVG--VKASG--GIRTLEDALAMI 198 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC-----CHHHHHHHHHHhC-----CCce--EEeeC--CcCCHHHHHHHH
Confidence 34577788888899999999999888864322 2555544433332 2222 22211 124555566666
Q ss_pred HHHHHHhCCC
Q 023606 152 KDSLFRLGLS 161 (280)
Q Consensus 152 ~~sl~~Lg~d 161 (280)
+.--.|+|++
T Consensus 199 ~aGA~riGtS 208 (221)
T PRK00507 199 EAGATRLGTS 208 (221)
T ss_pred HcCcceEccC
Confidence 6555666654
No 206
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=40.28 E-value=50 Score=30.42 Aligned_cols=64 Identities=23% Similarity=0.431 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHcCcccEEEecCccH-------HHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHH
Q 023606 178 GFIDGLGDAVEQGLVKAVGVSNYSE-------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE 244 (280)
Q Consensus 178 ~~~~~L~~lk~~G~ir~iGvS~~~~-------~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~ 244 (280)
-.-+++++++++|.-|.+-+|.+.. ..+..+.+..+..+... -+.++++++++..++++....+
T Consensus 141 lTEea~~qikkd~v~r~VafsqYPQyS~sTsGSSln~l~r~~r~~~~~~---~~~wsiIdrW~t~~glIkafA~ 211 (395)
T KOG1321|consen 141 LTEEALEQIKKDGVTRAVAFSQYPQYSCSTSGSSLNELWRQFREDGYER---DIKWSIIDRWPTREGLIKAFAE 211 (395)
T ss_pred ccHHHHHHHHhcCceeEEeeccCCceeeecCcccHHHHHHHHHhcCccc---CCceEeeccccccchHHHHHHH
Confidence 3457889999999999999986532 44555555555444333 3477889998877666665443
No 207
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=40.22 E-value=3e+02 Score=25.37 Aligned_cols=93 Identities=9% Similarity=-0.021 Sum_probs=52.1
Q ss_pred CcEEEEecCCCCCC---CCCHHHHHHHHHHHHHHhCCCcccEE-EEec-CCC-----CCchhHHHHHHHHHHcCcccEEE
Q 023606 127 VEVTVATKFAALPW---RLGRQSVLAALKDSLFRLGLSSVELY-QLHW-AGI-----WGNEGFIDGLGDAVEQGLVKAVG 196 (280)
Q Consensus 127 ~~~~I~tK~~~~~~---~~~~~~i~~~l~~sl~~Lg~d~iDl~-~lH~-pd~-----~~~~~~~~~L~~lk~~G~ir~iG 196 (280)
.++.|..|++.... ..+.+...+ +-+.|+.+|+|+|++- ..|. +.. .+.........++++.=.+.=++
T Consensus 203 ~d~~v~iRi~~~D~~~~g~~~~e~~~-i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~ 281 (353)
T cd02930 203 EDFIIIYRLSMLDLVEGGSTWEEVVA-LAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIA 281 (353)
T ss_pred CCceEEEEecccccCCCCCCHHHHHH-HHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEE
Confidence 57788888864221 234444333 3344677888888872 2232 111 11112344556777776677777
Q ss_pred ecCc-cHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 197 VSNY-SEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 197 vS~~-~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
...+ +++.++++++. ...+.+++-
T Consensus 282 ~G~i~~~~~a~~~i~~-----g~~D~V~~g 306 (353)
T cd02930 282 SNRINTPEVAERLLAD-----GDADMVSMA 306 (353)
T ss_pred cCCCCCHHHHHHHHHC-----CCCChhHhh
Confidence 7665 78888888764 335555443
No 208
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=40.06 E-value=1.3e+02 Score=27.07 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=57.6
Q ss_pred HHHhCCCcccEEEEec-CCCCCchhH-----HHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCc
Q 023606 155 LFRLGLSSVELYQLHW-AGIWGNEGF-----IDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH~-pd~~~~~~~-----~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~ 228 (280)
++-++-..+|+..+.. .......+. -+.+-++..+--=|++|+.+.++..-+.+.+.+.+.--..-++++..+.
T Consensus 55 ~~~~~~~~i~~~~~~~~~~~~~~~d~~~~~~nd~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p 134 (293)
T COG2159 55 LAFMDAAGIDLFVLSGMGEVAIIPDLRRALANDDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHP 134 (293)
T ss_pred HhhhcccccceEEeeccccccchHHHhhhhhhHHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecc
Confidence 7777888899988884 211112222 2456666666667899999887642222222222111122233333333
Q ss_pred cCCC----cch-hhHHHHHHHcCCeEEEcccCcCC
Q 023606 229 IYRK----PEE-NGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 229 ~~~~----~~~-~~l~~~~~~~gi~i~a~spl~~G 258 (280)
..+. ... ..++++|+++|++|..+....-+
T Consensus 135 ~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~ 169 (293)
T COG2159 135 VAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPG 169 (293)
T ss_pred cccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 2221 111 36899999999999986555433
No 209
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=39.83 E-value=2.6e+02 Score=25.56 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=67.3
Q ss_pred HHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecC-CCCCCCCCHHHHHHHHHHHH
Q 023606 77 AKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKF-AALPWRLGRQSVLAALKDSL 155 (280)
Q Consensus 77 ~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~-~~~~~~~~~~~i~~~l~~sl 155 (280)
..++...+...|+.++-++..|-.... .+.+-+|++.. .--||.... +...+.++.+ ..++...
T Consensus 160 kkdi~~i~~a~g~~yVA~~~~~~~~~~------~~~i~~A~~~~------Gps~I~~~spC~~~~~~~~~---~~~~~~k 224 (300)
T PRK11864 160 KKPVPDIMAAHKVPYVATASIAYPEDF------IRKLKKAKEIR------GFKFIHLLAPCPPGWRFDPD---KTIEIAR 224 (300)
T ss_pred CCCHHHHHHHcCCCEEEEEeCCCHHHH------HHHHHHHHhCC------CCEEEEEeCCCCCCCCcChH---HHHHHHH
Confidence 356777778889999999988765333 66666666422 333444443 2333444444 3445555
Q ss_pred HHhCCCcccEEEEec-------CCC--CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHH
Q 023606 156 FRLGLSSVELYQLHW-------AGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLK 213 (280)
Q Consensus 156 ~~Lg~d~iDl~~lH~-------pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~ 213 (280)
....+.|.-||-+.. +.. .+...-...-+-|+.||+.+++ +++.++++.+.++
T Consensus 225 ~Av~tg~wplye~~~g~~~~~~~~~~~~~~~~~~pv~~~l~~q~Rf~~L-----~~~~~~~~q~~vd 286 (300)
T PRK11864 225 LAVETGVWPLFEYENGKFKLNSPSKTLLDKKKRKPVEEYLKLQGRFKHL-----TEEEIKGLQEEID 286 (300)
T ss_pred HHHHcCCceEEEEECCEEEEccCCccccccccCCCHHHHHhhccchhcC-----CHHHHHHHHHHHH
Confidence 555555666666553 111 0111112344567889999998 3677777766543
No 210
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=39.74 E-value=3e+02 Score=25.13 Aligned_cols=130 Identities=11% Similarity=0.092 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHCCCCeEEc---cc-----ccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDT---AE-----VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGR 144 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DT---A~-----~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~ 144 (280)
++++..+..+.+.+.|+..||- .+ .||.|.+. -.--+.+.+.++...... ..++-|+.|+... ++ +.
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~L--l~~~~~~~eiv~avr~~~-~~~~pVsvKiR~g-~~-~~ 147 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATL--LKDPELIYQGAKAMREAV-PAHLPVTVKVRLG-WD-SG 147 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHh--hcCHHHHHHHHHHHHHhc-CCCcceEEEEECC-CC-Cc
Confidence 3466667777788899999981 11 35544111 011344555554432110 1257788887431 21 11
Q ss_pred HHHHHHHHHHHHHhCCCcccEEEEecCCC---CCchh-HHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHH
Q 023606 145 QSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEG-FIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (280)
Q Consensus 145 ~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~---~~~~~-~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~ 211 (280)
+. ...+-+.++..| +|.+.+|.-.. +.... -|+...++++.=.|.-||..+. +++.++++++.
T Consensus 148 ~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~ 215 (312)
T PRK10550 148 ER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAI 215 (312)
T ss_pred hH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhc
Confidence 22 234444566666 57777885332 11111 3788889998878899999887 78888888754
No 211
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=39.50 E-value=2.8e+02 Score=25.69 Aligned_cols=97 Identities=7% Similarity=-0.001 Sum_probs=63.3
Q ss_pred EEEEecCCC------------CCchhHHHHHHHHHHcCc----ccEEEecCc--cHHHHHHHHHHHHhcCCCEEEEcccC
Q 023606 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQGL----VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNY 226 (280)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~lk~~G~----ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (280)
.+.||.++. .+.+++++++.+..++.. |.++=+.++ +.+.++++.+.++. ....++-++|
T Consensus 206 aiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~~V~ieyvLI~GvNDs~e~~~~L~~ll~~--~~~~VnLIPy 283 (343)
T PRK14468 206 ALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGRRVTLEYTMLKGVNDHLWQAELLADLLRG--LVSHVNLIPF 283 (343)
T ss_pred EEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCcCCHHHHHHHHHHHhc--CCcEEEEEcC
Confidence 566787765 235688888876665532 456656654 56788888888764 3467788899
Q ss_pred CccCCC----cchh---hHHHHHHHcCCeEEEcccCc------CCCCCCC
Q 023606 227 SLIYRK----PEEN---GVKAACDELGITLIAYCPIA------QGSKPRK 263 (280)
Q Consensus 227 n~~~~~----~~~~---~l~~~~~~~gi~i~a~spl~------~G~L~~~ 263 (280)
|++... +... ...+..+++|+.+.....-| +|.|..+
T Consensus 284 np~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtiR~~~g~di~aaCGqL~~~ 333 (343)
T PRK14468 284 NPWEGSPFQSSPRAQILAFADVLERRGVPVSVRWSRGRDVGAACGQLALK 333 (343)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhhcCCccccC
Confidence 986532 1111 24456678899999887765 4777654
No 212
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=39.23 E-value=2.2e+02 Score=23.75 Aligned_cols=84 Identities=26% Similarity=0.339 Sum_probs=54.0
Q ss_pred HHHHhCCCc----ccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCcc
Q 023606 154 SLFRLGLSS----VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLI 229 (280)
Q Consensus 154 sl~~Lg~d~----iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~ 229 (280)
.|++.|+.- +|==++-|.++...+++.+.++++++.| |+-+=+||-+..++..+.+. .++++.. -
T Consensus 22 ~L~~~Gikgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~g-i~v~vvSNn~e~RV~~~~~~---l~v~fi~-------~ 90 (175)
T COG2179 22 ILKAHGIKGVILDLDNTLVPWDNPDATPELRAWLAELKEAG-IKVVVVSNNKESRVARAAEK---LGVPFIY-------R 90 (175)
T ss_pred HHHHcCCcEEEEeccCceecccCCCCCHHHHHHHHHHHhcC-CEEEEEeCCCHHHHHhhhhh---cCCceee-------c
Confidence 455556432 3444555655567889999999999999 56666899888888888654 2232221 1
Q ss_pred CCCcchhhHHHHHHHcCCe
Q 023606 230 YRKPEENGVKAACDELGIT 248 (280)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~ 248 (280)
-..+....+-.++++.++.
T Consensus 91 A~KP~~~~fr~Al~~m~l~ 109 (175)
T COG2179 91 AKKPFGRAFRRALKEMNLP 109 (175)
T ss_pred ccCccHHHHHHHHHHcCCC
Confidence 1223334577777877764
No 213
>PLN02591 tryptophan synthase
Probab=39.05 E-value=2e+02 Score=25.38 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=13.3
Q ss_pred hHHHHHHHcCCeEEEcc
Q 023606 237 GVKAACDELGITLIAYC 253 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~s 253 (280)
++.+.|+++||..+..-
T Consensus 122 ~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 122 ALRAEAAKNGIELVLLT 138 (250)
T ss_pred HHHHHHHHcCCeEEEEe
Confidence 57888899998877664
No 214
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=38.85 E-value=2.4e+02 Score=23.80 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=16.4
Q ss_pred hHHHHHHHcCCeEEEccc
Q 023606 237 GVKAACDELGITLIAYCP 254 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~sp 254 (280)
++++.++++|+.+.+|..
T Consensus 190 ~~v~~~~~~g~~v~~wTv 207 (229)
T cd08562 190 EQVKALKDAGYKLLVYTV 207 (229)
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 599999999999999965
No 215
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=38.65 E-value=3.2e+02 Score=25.26 Aligned_cols=128 Identities=10% Similarity=0.015 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 023606 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (280)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (280)
+.+.++..++++.+.+.|+..|.-+ | |+..=...-.+++ +.+++.+ -.+.|.|-. .-.+.+.+
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~---G-GEPll~~~~~~il-~~~~~~g-----~~~~i~TNG----~ll~~~~~--- 107 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFS---G-GEPLLRKDLEELV-AHARELG-----LYTNLITSG----VGLTEARL--- 107 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEE---C-CccCCchhHHHHH-HHHHHcC-----CcEEEECCC----ccCCHHHH---
Confidence 4667889999999999998877633 3 3332111112222 2222222 244566654 22343322
Q ss_pred HHHHHHHhCCCcccEEEEecCCC--------C--CchhHHHHHHHHHHcCcc--cEEEecCccHHHHHHHHHHHHhcCCC
Q 023606 151 LKDSLFRLGLSSVELYQLHWAGI--------W--GNEGFIDGLGDAVEQGLV--KAVGVSNYSEKRLRNAYEKLKKRGIP 218 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH~pd~--------~--~~~~~~~~L~~lk~~G~i--r~iGvS~~~~~~i~~~~~~~~~~~~~ 218 (280)
+.|...|++++- +.|+..+. . ..+.++++++.|++.|.- -.+-++..+.+++.++++.+...+++
T Consensus 108 --~~L~~~g~~~v~-iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~ 184 (378)
T PRK05301 108 --AALKDAGLDHIQ-LSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGAD 184 (378)
T ss_pred --HHHHHcCCCEEE-EEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCC
Confidence 234555655432 23344322 1 246688889999998842 12234566889999999988877765
No 216
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=38.49 E-value=3.2e+02 Score=25.18 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (280)
.+.++..++++.--++|+..|+.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 455888889999999999999985
No 217
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=38.41 E-value=1.9e+02 Score=26.74 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=22.2
Q ss_pred HHHHHHHHcCcccEEEecCc--cHHHHHHHHHHHHhcCCC
Q 023606 181 DGLGDAVEQGLVKAVGVSNY--SEKRLRNAYEKLKKRGIP 218 (280)
Q Consensus 181 ~~L~~lk~~G~ir~iGvS~~--~~~~i~~~~~~~~~~~~~ 218 (280)
+.++.+.+.| |+.|-+..+ ..+.+++.++.++..+..
T Consensus 91 ~dl~~a~~~g-vd~iri~~~~~e~d~~~~~i~~ak~~G~~ 129 (333)
T TIGR03217 91 HDLKAAYDAG-ARTVRVATHCTEADVSEQHIGMARELGMD 129 (333)
T ss_pred HHHHHHHHCC-CCEEEEEeccchHHHHHHHHHHHHHcCCe
Confidence 4466666665 455555544 346677777777766643
No 218
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=38.29 E-value=2.6e+02 Score=23.99 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=16.1
Q ss_pred hHHHHHHHcCCeEEEccc
Q 023606 237 GVKAACDELGITLIAYCP 254 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~sp 254 (280)
.+++.|++.|+.+.+|..
T Consensus 196 ~~v~~~~~~Gl~v~vwTV 213 (237)
T cd08583 196 KLIEKLNKAGIYVYVYTI 213 (237)
T ss_pred HHHHHHHHCCCEEEEEeC
Confidence 589999999999999964
No 219
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=38.08 E-value=2.7e+02 Score=24.21 Aligned_cols=162 Identities=19% Similarity=0.216 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCC-CCCCCCHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LPWRLGRQSVLAALKD 153 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~-~~~~~~~~~i~~~l~~ 153 (280)
.+....|...+..++.....+---| -+ .+.+ +.+.... ++-.+.|.+.- ..-..+.+++...+.+
T Consensus 13 ~Dv~p~l~~~l~~~v~i~e~G~LDg--ls------~~eI-~~~aP~~-----ge~vLvTrL~DG~~V~ls~~~v~~~lq~ 78 (221)
T PF07302_consen 13 TDVTPELTEILGEGVEIVEAGALDG--LS------REEI-AALAPEP-----GEYVLVTRLRDGTQVVLSKKKVEPRLQA 78 (221)
T ss_pred chhHHHHHHHcCCCceEEEeccCCC--CC------HHHH-HHhCCCC-----CCceeEEEeCCCCEEEEEHHHHHHHHHH
Confidence 4566677778878887776543333 33 4444 5554433 56777777732 1224778999999999
Q ss_pred HHHHhCCCcccEEEEecCCCCC----------chhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEc
Q 023606 154 SLFRLGLSSVELYQLHWAGIWG----------NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ 223 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH~pd~~~----------~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q 223 (280)
....|..+-.|++++-+-..++ .+.++..+-...-.| ..+||-.-.++++....+.-+....++. -
T Consensus 79 ~i~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~~~~~kW~~l~~~~~--~ 154 (221)
T PF07302_consen 79 CIAQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGG--HQVGVIVPLPEQIAQQAEKWQPLGNPVV--V 154 (221)
T ss_pred HHHHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCC--CeEEEEecCHHHHHHHHHHHHhcCCCeE--E
Confidence 9999988878888887644321 344555555555555 7899988888888855443222222222 2
Q ss_pred ccCCccCCCcchhhHHHHH---HHcCCeEEEcccCc
Q 023606 224 VNYSLIYRKPEENGVKAAC---DELGITLIAYCPIA 256 (280)
Q Consensus 224 ~~~n~~~~~~~~~~l~~~~---~~~gi~i~a~spl~ 256 (280)
.-.|++....+ ++.+.+ +++|..++..--.|
T Consensus 155 a~asPy~~~~~--~l~~Aa~~L~~~gadlIvLDCmG 188 (221)
T PF07302_consen 155 AAASPYEGDEE--ELAAAARELAEQGADLIVLDCMG 188 (221)
T ss_pred EEeCCCCCCHH--HHHHHHHHHHhcCCCEEEEECCC
Confidence 33444432222 344444 34567766654443
No 220
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=37.84 E-value=1.3e+02 Score=23.44 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=45.0
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCC---cccEEEEecCCC--CCchhHHHHHHHHHHc
Q 023606 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLS---SVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (280)
Q Consensus 125 ~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d---~iDl~~lH~pd~--~~~~~~~~~L~~lk~~ 189 (280)
+|=-+.|+-|+|. -..+..+++-+.++.+.+..+ -.|++++-.+.. .+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~---AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN---AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc---hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 3677889999874 456777888888888887643 479999988765 4456667777666544
No 221
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=37.72 E-value=80 Score=29.80 Aligned_cols=53 Identities=11% Similarity=0.244 Sum_probs=34.5
Q ss_pred CccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcch----hhHHHHHHHcCCeEEE
Q 023606 199 NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE----NGVKAACDELGITLIA 251 (280)
Q Consensus 199 ~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~----~~l~~~~~~~gi~i~a 251 (280)
|++.+.++++++..-..+++..+.-+-.|....++.. .++.++|++++|+++-
T Consensus 168 d~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~ 224 (471)
T COG3033 168 NFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVM 224 (471)
T ss_pred ccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEe
Confidence 4566666666665555556777777777766655543 2567788888887763
No 222
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.63 E-value=2.2e+02 Score=23.02 Aligned_cols=107 Identities=15% Similarity=0.195 Sum_probs=69.0
Q ss_pred HHHHHHHHH-HCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 023606 77 AKAAFDTSL-DNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (280)
Q Consensus 77 ~~~~l~~A~-~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl 155 (280)
..+++..++ +.|+..+.+.-.=-+ |+.+-.|+.+- -+++..+-. ......+...+.+.|
T Consensus 28 gakvia~~l~d~GfeVi~~g~~~tp---------~e~v~aA~~~d------v~vIgvSsl-----~g~h~~l~~~lve~l 87 (143)
T COG2185 28 GAKVIARALADAGFEVINLGLFQTP---------EEAVRAAVEED------VDVIGVSSL-----DGGHLTLVPGLVEAL 87 (143)
T ss_pred chHHHHHHHHhCCceEEecCCcCCH---------HHHHHHHHhcC------CCEEEEEec-----cchHHHHHHHHHHHH
Confidence 345777777 579988887766555 89998887654 345544443 345667788888999
Q ss_pred HHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHH
Q 023606 156 FRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (280)
Q Consensus 156 ~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~ 210 (280)
+..|.+.| +.+-... .+.++ +++|++.|--+.++-.+--.+.+..++.
T Consensus 88 re~G~~~i--~v~~GGv-ip~~d----~~~l~~~G~~~if~pgt~~~~~~~~v~~ 135 (143)
T COG2185 88 REAGVEDI--LVVVGGV-IPPGD----YQELKEMGVDRIFGPGTPIEEALSDLLT 135 (143)
T ss_pred HHhCCcce--EEeecCc-cCchh----HHHHHHhCcceeeCCCCCHHHHHHHHHH
Confidence 99998744 4333322 12222 7788889988888886543344444433
No 223
>PTZ00081 enolase; Provisional
Probab=37.49 E-value=2.2e+02 Score=27.47 Aligned_cols=97 Identities=12% Similarity=0.043 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcC--cccEEEe--cCccHHHHHHHHHHHHhcCC
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVGV--SNYSEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G--~ir~iGv--S~~~~~~i~~~~~~~~~~~~ 217 (280)
.+++.+.+-+.+.++.++ ++++-.|-. ++-|+.+.+|.+.= .+.-+|= +..+++.+.++++. -
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~---~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~-----~ 347 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFD---QDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEK-----K 347 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCC---cccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHh-----C
Confidence 566666666666666654 556666543 23366666666653 4544443 23468888888765 3
Q ss_pred CEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
..+++|+..|-+-.-.+..++.+.|+++|+.++.
T Consensus 348 aad~i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 348 ACNALLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred CCCEEEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 4666666665443322334578888999988776
No 224
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=37.40 E-value=3e+02 Score=24.52 Aligned_cols=110 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC---CCchhHHHHHHHHHH--cCcccEE-EecCccHHHHHHHHHHHHh
Q 023606 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVE--QGLVKAV-GVSNYSEKRLRNAYEKLKK 214 (280)
Q Consensus 141 ~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~---~~~~~~~~~L~~lk~--~G~ir~i-GvS~~~~~~i~~~~~~~~~ 214 (280)
..+.+.+++.++..++.+|++- ++..-.-.+ ...+|-.+.++..++ .|++.-| |++..+.+...++.+.++.
T Consensus 17 ~iD~~~~~~~i~~l~~~~Gv~g--i~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 17 EINEDVLRAIVDYLIEKQGVDG--LYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEE 94 (288)
T ss_pred CCCHHHHHHHHHHHHhcCCCCE--EEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHH
Q ss_pred cCCC-EEEEcccCCccCCCcchhhHHHHHHHc-CCeEEEc
Q 023606 215 RGIP-LASNQVNYSLIYRKPEENGVKAACDEL-GITLIAY 252 (280)
Q Consensus 215 ~~~~-~~~~q~~~n~~~~~~~~~~l~~~~~~~-gi~i~a~ 252 (280)
.+.. +.+....|...+...-..-..+.|+.. +++|+.|
T Consensus 95 ~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iY 134 (288)
T cd00954 95 LGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIY 134 (288)
T ss_pred cCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEE
No 225
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=37.33 E-value=2.1e+02 Score=30.37 Aligned_cols=109 Identities=15% Similarity=0.048 Sum_probs=61.1
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh-CCCcccEEEEecCCCCC--chhHHHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLHWAGIWG--NEGFIDGLGDA 186 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~L-g~d~iDl~~lH~pd~~~--~~~~~~~L~~l 186 (280)
|+.|-++|++.....+.+-++|.|=+.. ..-.|.+..-+++.-++. ...-+.++.++.|+... ..+...+++.+
T Consensus 556 ~~~L~~~I~~~~~~~~p~~I~V~tTc~~---eiIGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G~~~a~~ai 632 (917)
T PRK14477 556 WENLKQGILRVIEKFKPKVIGVMTTGLT---ETMGDDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEGYAAAVEAI 632 (917)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCchH---hhhhcCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHHHHHHHHHH
Confidence 8888888887543222456677766532 222233333333332221 11246899999998732 33333333333
Q ss_pred H---------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 187 V---------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 187 k---------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
. +.++|--||-++.++..++++.+..+..++++.+
T Consensus 633 v~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 633 VATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred HHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 2 2467888876665566666666666777776654
No 226
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=37.10 E-value=2.6e+02 Score=25.04 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=12.3
Q ss_pred hHHHHHHHcCCeEEEccc
Q 023606 237 GVKAACDELGITLIAYCP 254 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~sp 254 (280)
++.+.|+++||..+-..+
T Consensus 138 ~~~~~~~~~gi~~I~lva 155 (265)
T COG0159 138 ELLKAAEKHGIDPIFLVA 155 (265)
T ss_pred HHHHHHHHcCCcEEEEeC
Confidence 477788888887665533
No 227
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.07 E-value=3.2e+02 Score=25.67 Aligned_cols=96 Identities=19% Similarity=0.160 Sum_probs=61.1
Q ss_pred EEecCCC------C------CchhHHHHHHHHHH-cC------cccEEEecCc--cHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 167 QLHWAGI------W------GNEGFIDGLGDAVE-QG------LVKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 167 ~lH~pd~------~------~~~~~~~~L~~lk~-~G------~ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
.+|.+++ . +.+++++++.+..+ .| .|+++=+.++ +.+.++++.+.++. .+..++-++
T Consensus 221 SLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~rrI~irypLIpGvNDs~e~a~~La~ll~~--l~~~VnLIP 298 (372)
T PRK11194 221 SLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKD--TPCKINLIP 298 (372)
T ss_pred eccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCCeEEEEEEeECCCCCCHHHHHHHHHHHhc--CCceEEEec
Confidence 4898765 2 23455555544433 32 3577667765 68888988888754 346888899
Q ss_pred CCccCCC----cchh---hHHHHHHHcCCeEEEcccC------cCCCCCCCC
Q 023606 226 YSLIYRK----PEEN---GVKAACDELGITLIAYCPI------AQGSKPRKR 264 (280)
Q Consensus 226 ~n~~~~~----~~~~---~l~~~~~~~gi~i~a~spl------~~G~L~~~~ 264 (280)
||.+... +... .+.+..+++|+.+.....- ++|.|..+.
T Consensus 299 YN~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G~di~aaCGQL~~~~ 350 (372)
T PRK11194 299 WNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDV 350 (372)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEecCCCCcchhcCcCcHhhh
Confidence 9986532 2211 3566777889999885444 457777655
No 228
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=36.95 E-value=1.9e+02 Score=25.25 Aligned_cols=109 Identities=9% Similarity=0.095 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEecCCC--C--CchhHHHHHHHHHHcCc-ccEEEecCc------cHHHHHHHHHHH
Q 023606 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI--W--GNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYEKL 212 (280)
Q Consensus 144 ~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~--~--~~~~~~~~L~~lk~~G~-ir~iGvS~~------~~~~i~~~~~~~ 212 (280)
++.+..+++...+.-- .+- +++|.-+. . ....+.+.+++|++.|. |..||+-.| +++.+...++..
T Consensus 102 ~~~i~~af~~ar~~~P--~a~-l~~Ndy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~~~~~~~~~~~l~~~ 178 (254)
T smart00633 102 EDYIEKAFRYAREADP--DAK-LFYNDYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLGSPNIAEIRAALDRF 178 (254)
T ss_pred hHHHHHHHHHHHHhCC--CCE-EEEeccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCCCCCHHHHHHHHHHH
Confidence 4566666666544422 122 23343221 1 13467888899999998 999998655 467788887777
Q ss_pred HhcCCCEEEEcccCCccCCC---c-chhhHHHHHHHcC--CeEEEcccC
Q 023606 213 KKRGIPLASNQVNYSLIYRK---P-EENGVKAACDELG--ITLIAYCPI 255 (280)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~---~-~~~~l~~~~~~~g--i~i~a~spl 255 (280)
...+.++.+-.+.+...... . .-..+++.|.++. .+|+.|.-.
T Consensus 179 ~~~g~pi~iTE~dv~~~~~~~~qA~~~~~~l~~~~~~p~v~gi~~Wg~~ 227 (254)
T smart00633 179 ASLGLEIQITELDISGYPNPQAQAADYEEVFKACLAHPAVTGVTVWGVT 227 (254)
T ss_pred HHcCCceEEEEeecCCCCcHHHHHHHHHHHHHHHHcCCCeeEEEEeCCc
Confidence 76677777655555432210 0 1125788888774 677777544
No 229
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=36.81 E-value=3.3e+02 Score=24.75 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=41.4
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCCC
Q 023606 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSKP 261 (280)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L~ 261 (280)
++.+|.++.+.++..+++..+++..+|. ..+-..+++.|+.++...||+.+.-.
T Consensus 237 s~~~l~~l~~~ik~~~v~~If~e~~~~~-------~~~~~la~e~g~~v~~ldpl~~~~~~ 290 (311)
T PRK09545 237 GAQRLHEIRTQLVEQKATCVFAEPQFRP-------AVIESVAKGTSVRMGTLDPLGTNIKL 290 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCh-------HHHHHHHHhcCCeEEEeccccccccC
Confidence 6799999999998888888887766643 12455678889999888899876533
No 230
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=36.81 E-value=1.7e+02 Score=27.98 Aligned_cols=114 Identities=9% Similarity=0.078 Sum_probs=61.0
Q ss_pred cccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHh-CCCcccEEEEecCCCC
Q 023606 96 EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRL-GLSSVELYQLHWAGIW 174 (280)
Q Consensus 96 ~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~L-g~d~iDl~~lH~pd~~ 174 (280)
-.||. |+.|-++|++.....+.+-++|.|=+-. ..-.+.+..-+++.-++. ...-+.++.++-|+..
T Consensus 71 ~VfGg---------~~~L~~~I~~~~~~~~P~~I~V~ttC~~---eiIGDDi~~v~~~~~~e~p~~~~~pvi~v~tpgf~ 138 (432)
T TIGR01285 71 TILGG---------DEHIEEAIDTLCQRNKPKAIGLLSTGLT---ETRGEDIARVVRQFREKHPQHKGTAVVTVNTPDFK 138 (432)
T ss_pred eEECc---------HHHHHHHHHHHHHhcCCCEEEEeCCCcc---cccccCHHHHHHHHHhhcccccCCeEEEecCCCcC
Confidence 46786 8888888887654323455667666532 222233333333322221 0113678889988873
Q ss_pred C--chh---HHHHHH-HHH--------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 175 G--NEG---FIDGLG-DAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 175 ~--~~~---~~~~L~-~lk--------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
. ..+ ++++|- ++. +.++|--||-++.++..+.++.+..+..++++.+
T Consensus 139 g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiig~~~~~~~d~~elk~lL~~~Gl~~~~ 199 (432)
T TIGR01285 139 GSLEDGYAAAVESIIEAWVPPAPARAQRNRRVNLLVGSLLTPGDIEELRRMVEAFGLKPII 199 (432)
T ss_pred CchHHHHHHHHHHHHHHHcccccccCCCCCeEEEEcCCCCCccCHHHHHHHHHHcCCceEE
Confidence 2 223 333332 222 1456777787766555556666656666766643
No 231
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=36.74 E-value=1.2e+02 Score=25.47 Aligned_cols=36 Identities=19% Similarity=0.095 Sum_probs=27.2
Q ss_pred CchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 023606 175 GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (280)
Q Consensus 175 ~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~ 211 (280)
..+++.+.|+.|+++|.--.| +|+.+...++..++.
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i-~S~~~~~~~~~~l~~ 128 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGL-ASASPLHMLEAVLTM 128 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEE-EeCCcHHHHHHHHHh
Confidence 457899999999999965555 777677777766654
No 232
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=36.60 E-value=3e+02 Score=24.29 Aligned_cols=108 Identities=18% Similarity=0.126 Sum_probs=57.2
Q ss_pred HHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCC-------CCCHHHHHHHH
Q 023606 79 AAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW-------RLGRQSVLAAL 151 (280)
Q Consensus 79 ~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~-------~~~~~~i~~~l 151 (280)
+.++.|++.|...|........ ++.+ ..+++++ -.+++...-+.+.. ....+.+.+.+
T Consensus 86 ~vi~~al~~G~~iINsis~~~~---------~~~~-~l~~~~~-----~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~ 150 (257)
T TIGR01496 86 EVARAALEAGADIINDVSGGQD---------PAML-EVAAEYG-----VPLVLMHMRGTPRTMQENPHYEDVVEEVLRFL 150 (257)
T ss_pred HHHHHHHHcCCCEEEECCCCCC---------chhH-HHHHHcC-----CcEEEEeCCCCCcccccCCCcccHHHHHHHHH
Confidence 4677788889888875433211 3333 4456554 35565544332111 11123344444
Q ss_pred HHH---HHHhCCCcccEEEEecCCC----CCchhHHHHHHHHHHcCcccEEEecCcc
Q 023606 152 KDS---LFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (280)
Q Consensus 152 ~~s---l~~Lg~d~iDl~~lH~pd~----~~~~~~~~~L~~lk~~G~ir~iGvS~~~ 201 (280)
++. +++.|++.-|+++=-.... ...-++++.++++++.|.=--+|+|+-+
T Consensus 151 ~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 151 EARAEELVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHHHHHHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 444 4556887555444211111 1134566777888887766689999854
No 233
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.41 E-value=3.4e+02 Score=24.83 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 023606 76 AAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSL 155 (280)
Q Consensus 76 ~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl 155 (280)
.-.+.+..+++.|-.+|=...++|+ =++.+.+|.... ..+...-| ..+...+...+.+..
T Consensus 110 ~g~e~l~e~l~~~~gvIl~~~H~gn---------~E~~~~~l~~~~-----~~~~~~yr------p~~np~ld~~i~~~R 169 (308)
T COG1560 110 EGLEHLEEALANGRGVILVTPHFGN---------WELGGRALAQQG-----PKVTAMYR------PPKNPLLDWLITRGR 169 (308)
T ss_pred cCHHHHHHHHHcCCCEEEEecCcch---------HHHHHHHHHHhC-----CCeeEEec------CCCCHHHHHHHHHHH
Confidence 4456788888888888888888888 788888888765 22222222 234456788888888
Q ss_pred HHhCCCccc
Q 023606 156 FRLGLSSVE 164 (280)
Q Consensus 156 ~~Lg~d~iD 164 (280)
++.|...++
T Consensus 170 ~r~~~~~~~ 178 (308)
T COG1560 170 ERFGGRLLP 178 (308)
T ss_pred HhcCCcccC
Confidence 999887766
No 234
>COG3653 N-acyl-D-aspartate/D-glutamate deacylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.35 E-value=4.1e+02 Score=25.82 Aligned_cols=109 Identities=20% Similarity=0.096 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHCCCCeEE--------cccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHH
Q 023606 74 MKAAKAAFDTSLDNGITFFD--------TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~D--------TA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~ 145 (280)
-....++++.|+|+|.==+- |+..|.++..+ ...++..+.++.-... +..+.-+|.. .-...
T Consensus 181 laaMaallreAlEaGalGmS~~~~~~~~tgd~~p~~~l~--~~t~el~~la~~va~a---g~~iLqst~d-----~~ega 250 (579)
T COG3653 181 LAAMAALLREALEAGALGMSMDAAIDKLTGDRYPSRALP--FATWELRRLAISVARA---GGRILQSTHD-----RDEGA 250 (579)
T ss_pred HHHHHHHHHHHHhccccccchhhhcccccccccCCcccC--cchHHHHHHHHHHHHh---cCceeEeecc-----ccchH
Confidence 34578899999999865555 77777765432 1235666666543321 3455544443 33455
Q ss_pred HHHHHHHHHHHHh-CCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHH
Q 023606 146 SVLAALKDSLFRL-GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAY 209 (280)
Q Consensus 146 ~i~~~l~~sl~~L-g~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~ 209 (280)
...+.++++-+.- .-..+-+.+.|..+. .-..+|++.+....++++.
T Consensus 251 a~L~~l~~a~ri~~R~~~vr~v~s~~a~a-----------------g~~n~~~a~~~lgl~~kaq 298 (579)
T COG3653 251 AALEALLEASRIGNRRKGVRMVMSHSADA-----------------GSMNWGVAVFGLGLIEKAQ 298 (579)
T ss_pred HHHHHHHHHHHhcCcccCceEEEeccccc-----------------cccchhhhhhccchHHHHH
Confidence 5666666666666 344677888886542 2356666667666666653
No 235
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=36.30 E-value=1.6e+02 Score=28.86 Aligned_cols=46 Identities=15% Similarity=0.090 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcc
Q 023606 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (280)
Q Consensus 145 ~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~i 192 (280)
+...+.+++.+++||++ .|.+. ...+..-...+.+.+++|+++|.|
T Consensus 68 ~~~~~~~~~~l~~LgI~-~D~~~-~t~~~~~~~~v~~~~~~L~~kG~i 113 (530)
T TIGR00398 68 DKYHEEFKDDWKWLNIS-FDRFI-RTTDEEHKEIVQKIFQKLKENGYI 113 (530)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCc-cCCCHHHHHHHHHHHHHHHHCCCE
Confidence 45678889999999997 57432 111112245678899999999997
No 236
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=36.12 E-value=3.6e+02 Score=25.08 Aligned_cols=25 Identities=4% Similarity=-0.005 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEccc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~ 96 (280)
.+.++..++++.--+.|+..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4557888899888899999999753
No 237
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=36.11 E-value=3e+02 Score=24.18 Aligned_cols=133 Identities=11% Similarity=0.082 Sum_probs=72.0
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCC-------------
Q 023606 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA------------- 137 (280)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~------------- 137 (280)
.+|.+...+.++..++.|++-+-..-.-|-+.+.-...=++++..+.+... +++-|..-++.
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~-----~~~~vi~gv~~~~~~~~i~~a~~a 88 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA-----GRVPVIAGVGANSTREAIELARHA 88 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC-----CCCeEEEecCCccHHHHHHHHHHH
Confidence 567788889999999999987765444443222000011233333333332 23333333331
Q ss_pred -----------C--CCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHH
Q 023606 138 -----------L--PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (280)
Q Consensus 138 -----------~--~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~ 204 (280)
+ .+..+.+.+.+-+++..+.. -+.+++-|.|......-..+.+.+|.+...|..|=.|..+...
T Consensus 89 ~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~---~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~giK~s~~d~~~ 165 (281)
T cd00408 89 EEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS---DLPVILYNIPGRTGVDLSPETIARLAEHPNIVGIKDSSGDLDR 165 (281)
T ss_pred HHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC---CCCEEEEECccccCCCCCHHHHHHHhcCCCEEEEEeCCCCHHH
Confidence 0 12245566777777766652 2667777777653333335556666655555555556656666
Q ss_pred HHHHHHH
Q 023606 205 LRNAYEK 211 (280)
Q Consensus 205 i~~~~~~ 211 (280)
+.++.+.
T Consensus 166 ~~~~~~~ 172 (281)
T cd00408 166 LTRLIAL 172 (281)
T ss_pred HHHHHHh
Confidence 6666543
No 238
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.83 E-value=3.6e+02 Score=24.91 Aligned_cols=11 Identities=27% Similarity=0.425 Sum_probs=5.4
Q ss_pred HHHhCCCcccE
Q 023606 155 LFRLGLSSVEL 165 (280)
Q Consensus 155 l~~Lg~d~iDl 165 (280)
|.+.|+++|.+
T Consensus 34 L~~aGv~~IEv 44 (337)
T PRK08195 34 LDAAGVPVIEV 44 (337)
T ss_pred HHHcCCCEEEe
Confidence 44445554444
No 239
>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase.
Probab=35.81 E-value=3.6e+02 Score=24.94 Aligned_cols=158 Identities=9% Similarity=0.037 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHCCCCeEEccccc-------CCCCCCCCchhhHHHHHHH---HhcccCCCCCcEEEEecCCC-CCCCCC
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVY-------GSRASFGAINSETLLGRFI---KERKQRDPEVEVTVATKFAA-LPWRLG 143 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Y-------g~g~~~~~~~sE~~lG~aL---~~~~~~~~R~~~~I~tK~~~-~~~~~~ 143 (280)
..+.++++.+.+.|+.+++.-... +.|.+ .+..+-..+ +...... ++ .|..++=. .....+
T Consensus 70 ~~~~~~~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~-----~~~v~~av~~~~~~~~~~~-~~--~i~v~lI~~~~R~~~ 141 (345)
T cd01321 70 DYYRRLLEELYEDNVQYVELRSSFSPLYDLDGREYD-----YEETVQLLEEVVEKFKKTH-PD--FIGLKIIYATLRNFN 141 (345)
T ss_pred HHHHHHHHHHHHcCCEEEEEeecchHHHHccCCCCC-----HHHHHHHHHHHHHHHHHhC-CC--CceEEEEEEecCCCC
Confidence 456777788888888888843222 12333 233332222 3332111 11 12222110 012455
Q ss_pred HHHHHHHHHHHHHHhCCCccc-EEE--EecCCC--CCchhHHHHHHHHHHcC--c--ccEEEecCc----cHHHHHHHHH
Q 023606 144 RQSVLAALKDSLFRLGLSSVE-LYQ--LHWAGI--WGNEGFIDGLGDAVEQG--L--VKAVGVSNY----SEKRLRNAYE 210 (280)
Q Consensus 144 ~~~i~~~l~~sl~~Lg~d~iD-l~~--lH~pd~--~~~~~~~~~L~~lk~~G--~--ir~iGvS~~----~~~~i~~~~~ 210 (280)
.+...+.++...+--. ++-+ ++= |...+. .+......+++.+++.| . .-|.|=+.. .++.+.+++.
T Consensus 142 ~e~~~e~~~~a~~~~~-~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~ 220 (345)
T cd01321 142 DSEIKESMEQCLNLKK-KFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALL 220 (345)
T ss_pred HHHHHHHHHHHHHHHH-hCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHH
Confidence 6666666666655211 1112 111 112221 34566777788888877 2 355554331 1344444442
Q ss_pred HHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 211 KLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 211 ~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
. . +.=+.=.+++.+ ...+++++++++|.+-.
T Consensus 221 l-g-----~~RIGHG~~~~~----dp~ll~~l~~~~I~lEv 251 (345)
T cd01321 221 L-N-----TKRIGHGFALPK----HPLLMDLVKKKNIAIEV 251 (345)
T ss_pred h-C-----CCcCccccccCc----CHHHHHHHHHcCCeEEE
Confidence 1 1 111111111111 12599999999998753
No 240
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.50 E-value=2.8e+02 Score=28.36 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=64.0
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEEccc--ccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEe--cCCCCCCCCC--
Q 023606 70 DDRKMKAAKAAFDTSLDNGITFFDTAE--VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT--KFAALPWRLG-- 143 (280)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~--~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~t--K~~~~~~~~~-- 143 (280)
.+.|.++..++++...+.|+.-|--+. +|-|... |..+++.+++.. .++.|++ ++++....+.
T Consensus 134 ~~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~H------E~~v~eiire~~-----~~i~V~~shev~p~~~~~eR~ 202 (674)
T COG0145 134 KPLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEH------ELRVAEIIREIG-----PDIPVSLSHEVSPEIGEYERA 202 (674)
T ss_pred CcCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHH------HHHHHHHHHHhc-----CCceEEechhcchhcCcccch
Confidence 457889999999999999999776554 5566655 999999999987 4566666 7765211111
Q ss_pred ------------HHHHHHHHHHHHHHhCCCcccEEEEecCC
Q 023606 144 ------------RQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (280)
Q Consensus 144 ------------~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd 172 (280)
.....++++..++.-|.+ .+++++.+..
T Consensus 203 ~TavlnA~L~pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdG 242 (674)
T COG0145 203 NTAVLNAYLSPILRRYLEAVKDALKERGIK-ARLMVMQSDG 242 (674)
T ss_pred hhheeeeeehHHHHHHHHHHHHHHHhcCCC-ceeEEEecCC
Confidence 134566677777777764 6778877654
No 241
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=35.39 E-value=2.9e+02 Score=23.73 Aligned_cols=160 Identities=15% Similarity=0.064 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
.++++..++++.|.+.|+.-+-..+.| -+...+.|+. .++-|+|=++.+....+.+.-...+
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----------v~~a~~~l~~-------~~v~v~tVigFP~G~~~~~~K~~E~ 76 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----------VPLAKELLKG-------TEVRICTVVGFPLGASTTDVKLYET 76 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----------HHHHHHHcCC-------CCCeEEEEeCCCCCCCcHHHHHHHH
Confidence 567899999999999998877765555 3344445532 3577777776543334444444445
Q ss_pred HHHHHHhCCCcccEEEEecCC-CCCchhHHHHHHHHHHc--Ccc-cE-EEecCccHHHHHHHHHHHHhcCCCEEEEccc-
Q 023606 152 KDSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQ--GLV-KA-VGVSNYSEKRLRNAYEKLKKRGIPLASNQVN- 225 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd-~~~~~~~~~~L~~lk~~--G~i-r~-iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~- 225 (280)
++.++ +|.|-||+++--..- ......+.+.+.+.++. |+. +- +-.+-.+.+++.++.+.+...+. ++++..
T Consensus 77 ~~Av~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGA--DfvKTsT 153 (211)
T TIGR00126 77 KEAIK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGA--DFVKTST 153 (211)
T ss_pred HHHHH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC--CEEEeCC
Confidence 55544 699999988765421 13345667777777764 542 22 22222455788888887766554 445554
Q ss_pred -CCccCCCcchhhHHHHHHHcCCeEEEc
Q 023606 226 -YSLIYRKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 226 -~n~~~~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
|..-.-..+.-.++...-...++|-+.
T Consensus 154 Gf~~~gat~~dv~~m~~~v~~~v~IKaa 181 (211)
T TIGR00126 154 GFGAGGATVEDVRLMRNTVGDTIGVKAS 181 (211)
T ss_pred CCCCCCCCHHHHHHHHHHhccCCeEEEe
Confidence 764333333212332222235665543
No 242
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=35.12 E-value=2.7e+02 Score=23.38 Aligned_cols=160 Identities=12% Similarity=0.041 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
.+.++..++++.|.+.|+.-+-..+.+ -+...+.++. ..+.+.+=++.+......+.....+
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~-----------v~~~~~~l~~-------~~~~v~~~~~fp~g~~~~~~k~~ev 75 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCF-----------VPLAREALKG-------SGVKVCTVIGFPLGATTTEVKVAEA 75 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHH-----------HHHHHHHcCC-------CCcEEEEEEecCCCCCcHHHHHHHH
Confidence 356889999999999887666544322 2222233322 3455555555433445566677778
Q ss_pred HHHHHHhCCCcccEEEEecCC-CCCchhHHHHHHHHHHc--Cccc--EEEecCccHHHHHHHHHHHHhcCCCEEEEccc-
Q 023606 152 KDSLFRLGLSSVELYQLHWAG-IWGNEGFIDGLGDAVEQ--GLVK--AVGVSNYSEKRLRNAYEKLKKRGIPLASNQVN- 225 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd-~~~~~~~~~~L~~lk~~--G~ir--~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~- 225 (280)
+++++ +|.|-+|+++-=..- ....+.+++.+.++++. |+.- -+.....+.+.+..+.+.+...+. +++.+.
T Consensus 76 e~A~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~Ga--D~IKTsT 152 (203)
T cd00959 76 REAIA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGA--DFIKTST 152 (203)
T ss_pred HHHHH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC--CEEEcCC
Confidence 88777 699999987654321 12335577777777775 4432 234444567888888888776664 444454
Q ss_pred -CCccCCCcchhhHHHHHHHcCCeEEEc
Q 023606 226 -YSLIYRKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 226 -~n~~~~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
|..-.-..+.-.++...-+..++|.+.
T Consensus 153 G~~~~~at~~~v~~~~~~~~~~v~ik~a 180 (203)
T cd00959 153 GFGPGGATVEDVKLMKEAVGGRVGVKAA 180 (203)
T ss_pred CCCCCCCCHHHHHHHHHHhCCCceEEEe
Confidence 654333333212332222245666554
No 243
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=34.62 E-value=69 Score=23.71 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=23.1
Q ss_pred hHHHHHHHcCCeEEEcccCcCCCCCCC
Q 023606 237 GVKAACDELGITLIAYCPIAQGSKPRK 263 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~spl~~G~L~~~ 263 (280)
++-+.+.+.|+++....|-..|.+.|+
T Consensus 66 ~i~~~~~~~~ipv~~I~~~~Y~~mdg~ 92 (95)
T TIGR00853 66 DLKKETDKKGIPVEVINGAQYGKLTGA 92 (95)
T ss_pred HHHHHhhhcCCCEEEeChhhcccCCcc
Confidence 467788889999999999999988875
No 244
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=34.62 E-value=4.6e+02 Score=25.83 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=62.3
Q ss_pred cccccCCCCCCCCchhhHHHHHHHHhcccCC-CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCC
Q 023606 94 TAEVYGSRASFGAINSETLLGRFIKERKQRD-PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (280)
Q Consensus 94 TA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~-~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd 172 (280)
..-.||. |+.|-++|++..... +.+-++|.|=+. ...-.|.+..-+++.-++.. -++++.+|.|+
T Consensus 105 ~diVfGG---------e~kL~~~I~ea~~~~~~p~~I~V~tTC~---t~lIGDDi~av~k~~~~~~~--~~pVi~v~tpG 170 (513)
T TIGR01861 105 KHVVFGA---------EKLLKQNIIEAFKAFPHIKRMTIYQTCA---TALIGDDIAAIAKEVMEEMP--DVDIFVCNSPG 170 (513)
T ss_pred CceEeCc---------HHHHHHHHHHHHHhCCCCCeEEEEccCc---hhhccCCHHHHHHHHHHhcC--CCcEEEEeCCC
Confidence 3456775 886666666544322 145678877774 23445556565655555531 26899999998
Q ss_pred CCC-c-h----hHHHH-HHHHHH--------cCcccEEEecCc--cHHHHHHHHHHHHhcCCCEEEE
Q 023606 173 IWG-N-E----GFIDG-LGDAVE--------QGLVKAVGVSNY--SEKRLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 173 ~~~-~-~----~~~~~-L~~lk~--------~G~ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~ 222 (280)
... . . .+.++ ++++.. .+.|--||-.++ +.+.+++++ +..|+++.+.
T Consensus 171 F~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~~gD~~eik~lL---e~~Gl~v~~~ 234 (513)
T TIGR01861 171 FAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNIQGDQEVMVDYF---QRMGIQVLST 234 (513)
T ss_pred ccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCCccCHHHHHHHH---HHCCCeEEEE
Confidence 732 1 1 12222 233331 256788886555 345555554 4556665543
No 245
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=34.52 E-value=52 Score=30.17 Aligned_cols=99 Identities=14% Similarity=0.194 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHCCCC-eEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 76 AAKAAFDTSLDNGIT-FFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 76 ~~~~~l~~A~~~Gin-~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
...+.|++....||. +||. -| -..+=..|.... ++.++.++.-++.- ..-+++.+...-.-.
T Consensus 211 ~~~~aL~r~~P~GIDiYfeN---VG----------G~~lDavl~nM~---~~gri~~CG~ISqY-N~~~~~~~~~l~~ii 273 (343)
T KOG1196|consen 211 DLSAALKRCFPEGIDIYFEN---VG----------GKMLDAVLLNMN---LHGRIAVCGMISQY-NLENPEGLHNLSTII 273 (343)
T ss_pred CHHHHHHHhCCCcceEEEec---cC----------cHHHHHHHHhhh---hccceEeeeeehhc-cccCCccccchhhhe
Confidence 455677777777877 5552 22 223333344333 25678887776531 112223444444445
Q ss_pred HHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEE
Q 023606 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAV 195 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~i 195 (280)
-+|+.++. .+.+...| ..+..++.|..+.++|||++.
T Consensus 274 ~Kr~~iqg--flv~d~~d--~~~k~ld~l~~~ikegKI~y~ 310 (343)
T KOG1196|consen 274 YKRIRIQG--FLVSDYLD--KYPKFLDFLLPYIKEGKITYV 310 (343)
T ss_pred eeeEEeee--EEeechhh--hhHHHHHHHHHHHhcCceEEe
Confidence 56665543 22223222 236788999999999999886
No 246
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=34.36 E-value=27 Score=23.25 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=18.7
Q ss_pred ccceeecCCCCccccceeeecc
Q 023606 35 AEDKVKLGGSDLKVTKLGVGAW 56 (280)
Q Consensus 35 ~m~~r~lg~tg~~vs~lglGt~ 56 (280)
.-..+.|++||+.||.+-+|+.
T Consensus 14 fs~~~~l~dtglrvpv~KmGtg 35 (61)
T PF15221_consen 14 FSLGRALRDTGLRVPVIKMGTG 35 (61)
T ss_pred ccccccccccccCCceeeecch
Confidence 3456789999999999999987
No 247
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=34.33 E-value=3.6e+02 Score=24.55 Aligned_cols=173 Identities=11% Similarity=0.057 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhccc--------CCCCCcEEEEecCCCC-------
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQ--------RDPEVEVTVATKFAAL------- 138 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~--------~~~R~~~~I~tK~~~~------- 138 (280)
++...++-..++++|-+.++|+..=-....++...+++.+.+.++.... -+ ++...|.--+|+.
T Consensus 42 peiv~~vh~df~~aGa~ii~T~TYqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g-~~~~~iagsiGP~ga~~a~E 120 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTATYQATPEGFAERVSEDEAKQLIRRSVELARAARDAYG-EENQNIAGSLGPYGAALADE 120 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeehhhhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhc-ccccccceeccchhhhcChh
Confidence 5778888899999999999987432222221111223333333322110 01 3444566666651
Q ss_pred ---CCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-CCchhHHHHHHHHHHcCcccEEEecCcc------HHHHHHH
Q 023606 139 ---PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS------EKRLRNA 208 (280)
Q Consensus 139 ---~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~L~~lk~~G~ir~iGvS~~~------~~~i~~~ 208 (280)
.+..+.+.+.+-.+.-++.|.-.-+|++.+--... ...+.+.+.+++. ++=-.|+++-.+ -..+.++
T Consensus 121 y~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~ea 197 (300)
T COG2040 121 YRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSEA 197 (300)
T ss_pred hcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHHH
Confidence 23455565655666667777766799998876432 3344555555555 777888888652 3667777
Q ss_pred HHHHHhcCCCEEEEcccCCccCCCcchhhHHHHH--HHcCCeEEEccc
Q 023606 209 YEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC--DELGITLIAYCP 254 (280)
Q Consensus 209 ~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~--~~~gi~i~a~sp 254 (280)
.++++. . +.+.-+-.|-+..+... .+++.. ...++++++|--
T Consensus 198 a~~~~~--~-~~iaa~gvNC~~p~~~~-a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 198 AAILAG--L-PNIAALGVNCCHPDHIP-AAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHHhc--C-cchhheeeccCChhhhH-HHHHHHHhcCCCCceEEcCC
Confidence 776542 2 22333333444433322 466666 455889999855
No 248
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=34.23 E-value=1.3e+02 Score=26.49 Aligned_cols=105 Identities=11% Similarity=-0.037 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCC
Q 023606 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (280)
Q Consensus 141 ~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~ 218 (280)
-++.++-.+..+-+.+.+++++|-+=.+-+++. .+..+.+++-|.|.++|-+-.-= ++-++-..+++.+. -
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY-~~dD~v~arrLee~------G 151 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPY-TTDDPVLARRLEEA------G 151 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeec-cCCCHHHHHHHHhc------C
Confidence 467777777778888999999999988877776 56789999999999999653222 22345555555442 4
Q ss_pred EEEEcccCCccCCCcc--h-hhHHHHHHHcCCeEEEc
Q 023606 219 LASNQVNYSLIYRKPE--E-NGVKAACDELGITLIAY 252 (280)
Q Consensus 219 ~~~~q~~~n~~~~~~~--~-~~l~~~~~~~gi~i~a~ 252 (280)
+.+++.--+++-.... + .-+.-...+.+++++.=
T Consensus 152 caavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVD 188 (262)
T COG2022 152 CAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVD 188 (262)
T ss_pred ceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEe
Confidence 5555555555432211 0 01333444557777754
No 249
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.16 E-value=2.6e+02 Score=26.27 Aligned_cols=96 Identities=15% Similarity=0.104 Sum_probs=63.1
Q ss_pred EEEEecCCC-------------CCchhHHHHHHH-HHHcC---cccEEEecC--ccHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 165 LYQLHWAGI-------------WGNEGFIDGLGD-AVEQG---LVKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 165 l~~lH~pd~-------------~~~~~~~~~L~~-lk~~G---~ir~iGvS~--~~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
.+.||.++. ++.+++++++.+ +++.| +|+++=+.+ .+.+.++++.+.++. ....++-++
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~--~~~~VnlIp 314 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASR--FFCKINLID 314 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhc--CCCeeEEee
Confidence 367787654 234677888875 45556 244555554 456788888888754 345677789
Q ss_pred CCccCCCcch-------hhHHHHHHHcCCeEEEcccCc------CCCCCC
Q 023606 226 YSLIYRKPEE-------NGVKAACDELGITLIAYCPIA------QGSKPR 262 (280)
Q Consensus 226 ~n~~~~~~~~-------~~l~~~~~~~gi~i~a~spl~------~G~L~~ 262 (280)
||++...+.. ....+..+++|+.+......| +|.|..
T Consensus 315 yn~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~di~aACGQL~~ 364 (368)
T PRK14456 315 YNSIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGTTINAACGQLAA 364 (368)
T ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcchhhcCCcchh
Confidence 9987654322 146677889999999987765 466654
No 250
>PRK05660 HemN family oxidoreductase; Provisional
Probab=34.06 E-value=2.2e+02 Score=26.62 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
+.+++.+.++.+.+.|+..+..-=.||- ...+.+.+.+.++
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Gl---------------------------------------pgqt~~~~~~~l~ 181 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGL---------------------------------------PDQSLEEALDDLR 181 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCcccEEEEe-------------cCCCCCchhHHHHHHHHHHcCcccEEEecCcc
Q 023606 153 DSLFRLGLSSVELYQLH-------------WAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~lH-------------~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~ 201 (280)
..++ ++.++|.+|.+- .|+.....+.++...+.-++.=-..+++|+|.
T Consensus 182 ~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yei~~fa 242 (378)
T PRK05660 182 QAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQQYETSAYA 242 (378)
T ss_pred HHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCcEeeccccc
No 251
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=33.99 E-value=1.6e+02 Score=23.30 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=43.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC----CcccEEEEecCCC--CCchhHHHHHHHHHH
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL----SSVELYQLHWAGI--WGNEGFIDGLGDAVE 188 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~----d~iDl~~lH~pd~--~~~~~~~~~L~~lk~ 188 (280)
|=-+.|+-|+|. -..+..+++.++++++.+.. ...|++++..+.. .+..++.+.|+.+.+
T Consensus 48 RvG~~VSKKvG~---AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 48 RVGFTVTKKNGN---AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred EEEEEEecccCc---chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 667888888863 56677889999999887643 4689999998875 445566666665554
No 252
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=33.84 E-value=4.1e+02 Score=25.59 Aligned_cols=68 Identities=9% Similarity=-0.005 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-C-CchhHHHHHHHHHHcCcccEEEecCcc---HHHHHHHHH
Q 023606 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-W-GNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYE 210 (280)
Q Consensus 141 ~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-~-~~~~~~~~L~~lk~~G~ir~iGvS~~~---~~~i~~~~~ 210 (280)
..+++.+.+.+++....++ .++.+.+-.+.. . ..+.+++.|..++++..=.++.+++.. ++.++++.+
T Consensus 59 ~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~ 131 (442)
T TIGR01290 59 LLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVD 131 (442)
T ss_pred cCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHH
Confidence 3677777777777766552 345566666443 2 235577888888877211245655542 566666654
No 253
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=33.29 E-value=3.3e+02 Score=23.80 Aligned_cols=86 Identities=10% Similarity=0.036 Sum_probs=48.2
Q ss_pred CCchhHHHHHHHHHHcCcccEEEecC----ccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeE
Q 023606 174 WGNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (280)
Q Consensus 174 ~~~~~~~~~L~~lk~~G~ir~iGvS~----~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i 249 (280)
.+.+.+.+..+++.+.| +..|.+++ ..|+++.++++.+.+. .+ +.+.+|.=+....-..-.-.+-+.|+.+
T Consensus 136 ~~~~~~~~~~~~~~~~G-~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~---~~l~~H~Hn~~Gla~An~laAi~aG~~~ 210 (259)
T cd07939 136 ADPDFLIEFAEVAQEAG-ADRLRFADTVGILDPFTTYELIRRLRAA-TD---LPLEFHAHNDLGLATANTLAAVRAGATH 210 (259)
T ss_pred CCHHHHHHHHHHHHHCC-CCEEEeCCCCCCCCHHHHHHHHHHHHHh-cC---CeEEEEecCCCChHHHHHHHHHHhCCCE
Confidence 44566666667777766 56677765 2567777766655432 22 2233333211111001122334788888
Q ss_pred EEcccCcCCCCCCCC
Q 023606 250 IAYCPIAQGSKPRKR 264 (280)
Q Consensus 250 ~a~spl~~G~L~~~~ 264 (280)
+--+..|.|.-+|+-
T Consensus 211 vd~s~~G~G~~aGN~ 225 (259)
T cd07939 211 VSVTVNGLGERAGNA 225 (259)
T ss_pred EEEecccccccccCc
Confidence 888888888777665
No 254
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=32.98 E-value=3.4e+02 Score=24.01 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=11.5
Q ss_pred hHHHHHHHcCCeEEE
Q 023606 237 GVKAACDELGITLIA 251 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a 251 (280)
++++.|+++|+..+.
T Consensus 133 ~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 133 ELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHHHHHHcCCcEEE
Confidence 577788888887766
No 255
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=32.87 E-value=3.2e+02 Score=26.05 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
+.++..+.++.+-+.|+..+...=.||- ...+.+.+.+.++
T Consensus 175 ~~~~~~~ai~~l~~~g~~~i~~dlI~Gl---------------------------------------P~qt~e~~~~~l~ 215 (430)
T PRK08208 175 KRADVHQALEWIRAAGFPILNIDLIYGI---------------------------------------PGQTHASWMESLD 215 (430)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCcccEEEEecCCCCC------------chhHHHHHHHHHHcCcccEEEecCcc
Q 023606 153 DSLFRLGLSSVELYQLHWAGIWG------------NEGFIDGLGDAVEQGLVKAVGVSNYS 201 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~lH~pd~~~------------~~~~~~~L~~lk~~G~ir~iGvS~~~ 201 (280)
..+ +|+.++|.++.+.-....+ ..-.-.+.+.|.+.|... +++++|.
T Consensus 216 ~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy~~-yei~~fa 274 (430)
T PRK08208 216 QAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGYTQ-TSMRMFR 274 (430)
T ss_pred HHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCCeE-Eeeccee
No 256
>PRK06256 biotin synthase; Validated
Probab=32.86 E-value=3.8e+02 Score=24.33 Aligned_cols=126 Identities=16% Similarity=0.121 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHHHHHCCCCeE-EcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 023606 71 DRKMKAAKAAFDTSLDNGITFF-DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (280)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~-DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (280)
..+.++..+.++.+.+.|++-| -.+..++.-.. --+.+-+.++.... +-.+-+.+-.+ ..+.+.+
T Consensus 90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~-----~~~~~~e~i~~i~~---~~~i~~~~~~g----~l~~e~l-- 155 (336)
T PRK06256 90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGK-----EVDQVVEAVKAIKE---ETDLEICACLG----LLTEEQA-- 155 (336)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCch-----HHHHHHHHHHHHHh---cCCCcEEecCC----cCCHHHH--
Confidence 3577899999999999998633 22222222100 01244455555431 11233333332 2333332
Q ss_pred HHHHHHHHhCCCcccEEEEecCCC---------CCchhHHHHHHHHHHcCcccE----EEecCccHHHHHHHHHHHHhcC
Q 023606 150 ALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRNAYEKLKKRG 216 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~pd~---------~~~~~~~~~L~~lk~~G~ir~----iGvS~~~~~~i~~~~~~~~~~~ 216 (280)
+.|+..|++.+.+ -+.. +. ...++.+++++.+++.|.--. +|+ +-+.+.+.+.+..+...+
T Consensus 156 ---~~LkeaG~~~v~~-~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~~~~l~~l~ 229 (336)
T PRK06256 156 ---ERLKEAGVDRYNH-NLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEHAFFLKELD 229 (336)
T ss_pred ---HHHHHhCCCEEec-CCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHHHHHHHhCC
Confidence 3466777765432 1111 11 235678899999999986322 334 456777777777665443
No 257
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=32.76 E-value=2e+02 Score=27.58 Aligned_cols=74 Identities=14% Similarity=0.198 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCccc-----EEEecCccH------HHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCe
Q 023606 180 IDGLGDAVEQGLVK-----AVGVSNYSE------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (280)
Q Consensus 180 ~~~L~~lk~~G~ir-----~iGvS~~~~------~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 248 (280)
++.|.+|.++|+|. ++++.+... ..-.++.+.++..++.-.+.-..+-.+++-... +.....+.||+
T Consensus 289 lD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~--m~keiE~~GIP 366 (431)
T TIGR01917 289 VDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGAT--MVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHH--HHHHHHHcCCC
Confidence 78899999999994 556655421 223345555555666555544455555554432 67778889999
Q ss_pred EEEcccC
Q 023606 249 LIAYCPI 255 (280)
Q Consensus 249 i~a~spl 255 (280)
++.+..+
T Consensus 367 vV~i~~~ 373 (431)
T TIGR01917 367 VVHICTV 373 (431)
T ss_pred EEEEeec
Confidence 9877544
No 258
>PRK09061 D-glutamate deacylase; Validated
Probab=32.65 E-value=4.2e+02 Score=25.90 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCCEEEEcccCC
Q 023606 205 LRNAYEKLKKRGIPLASNQVNYS 227 (280)
Q Consensus 205 i~~~~~~~~~~~~~~~~~q~~~n 227 (280)
..++++.++..++++.+...+|+
T Consensus 264 ~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 264 CLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHHHHHHHHHcCCcEEEEecCcc
Confidence 33344444444555555555555
No 259
>PRK10658 putative alpha-glucosidase; Provisional
Probab=32.60 E-value=2.2e+02 Score=28.98 Aligned_cols=89 Identities=15% Similarity=0.270 Sum_probs=56.3
Q ss_pred CcccEEEEecCCCCCchhHHHHHHHHHH---------cCcccEEEec-CccHHHHHHHHHHHHhcCCCEEEEcccCCccC
Q 023606 161 SSVELYQLHWAGIWGNEGFIDGLGDAVE---------QGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (280)
Q Consensus 161 d~iDl~~lH~pd~~~~~~~~~~L~~lk~---------~G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (280)
..+|.|++..+++ .++++...+|-- -|.-..-+.. +.+.+.+.++++..++.+++++++.+.+--.+
T Consensus 234 ~~ldyy~~~G~tp---~~v~~~Yt~LTGrp~lpP~WalG~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~ 310 (665)
T PRK10658 234 EYLEYFVIDGPTP---KEVLDRYTALTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDCFWMK 310 (665)
T ss_pred CcEEEEEEeCCCH---HHHHHHHHHHhCCCCCCchhhhheeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEchhhhc
Confidence 5799999998763 445544444431 1322111111 34567788888888888999998776542111
Q ss_pred ------------CCcchhhHHHHHHHcCCeEEEc
Q 023606 231 ------------RKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 231 ------------~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
.-++..++++..+++|+.++.|
T Consensus 311 ~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~ 344 (665)
T PRK10658 311 EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVW 344 (665)
T ss_pred CCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEe
Confidence 1122247999999999999887
No 260
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=32.47 E-value=3.8e+02 Score=24.18 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHHHh---CCCcccEEEEecCCC---CCchhHH----HHHHHHHHcCcccE-E--EecCc-cHHHHHH
Q 023606 142 LGRQSVLAALKDSLFRL---GLSSVELYQLHWAGI---WGNEGFI----DGLGDAVEQGLVKA-V--GVSNY-SEKRLRN 207 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~L---g~d~iDl~~lH~pd~---~~~~~~~----~~L~~lk~~G~ir~-i--GvS~~-~~~~i~~ 207 (280)
.+.+.++......++.+ |+.|+|+.+--.... .+.++++ +++.+.+++-.|+. + .+..+ +++.+++
T Consensus 65 ~t~e~l~~~~~~~~~e~~~~Gv~y~E~r~~p~~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~~r~~~~~~~~~ 144 (324)
T TIGR01430 65 RTEDDFKRLAYEYVEKAAKDGVVYAEVFFDPQLHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCGMRHKQPEAAEE 144 (324)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHH
Confidence 56777888888887665 888999774321111 2334444 45666555533332 2 22222 4566766
Q ss_pred HHHHHHhcCCCEEEEcccCCc--cCCCc-chhhHHHHHHHcCCeEEEccc
Q 023606 208 AYEKLKKRGIPLASNQVNYSL--IYRKP-EENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 208 ~~~~~~~~~~~~~~~q~~~n~--~~~~~-~~~~l~~~~~~~gi~i~a~sp 254 (280)
.++.+...... .++-+.+.. ..... .-..+++.++++|+.+..+.-
T Consensus 145 ~~~~~~~~~~~-~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~ 193 (324)
T TIGR01430 145 TLELAKPYKEQ-TIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAG 193 (324)
T ss_pred HHHHHHhhccC-cEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecC
Confidence 66655432211 122222221 11111 112578889999998877754
No 261
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=32.36 E-value=2e+02 Score=22.20 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=42.7
Q ss_pred CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCcccEEEEecCCC--CCchhHHHHHHHHHHc
Q 023606 125 PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (280)
Q Consensus 125 ~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg--~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~ 189 (280)
+|=-+.|+-|++. .-..+..+++.++++++... +...|++++..+.. .+..++.+.|.+|.+.
T Consensus 44 ~R~G~~VsKK~~~--~AV~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAK--RAVERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCc--chhhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 3666788888542 24567778888888887653 23579999998865 4456666666666543
No 262
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.25 E-value=1.8e+02 Score=26.10 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=18.9
Q ss_pred HHHHHHHHHHc-CcccEEEecCccHHHHHHHHH
Q 023606 179 FIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYE 210 (280)
Q Consensus 179 ~~~~L~~lk~~-G~ir~iGvS~~~~~~i~~~~~ 210 (280)
+-++++++++. |.-+.||+|.++.+++.++.+
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~ 206 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVA 206 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH
Confidence 55555555554 323457777777777666643
No 263
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=32.24 E-value=1.4e+02 Score=22.73 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=16.9
Q ss_pred CCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 216 GIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 216 ~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
+++-.++|.. ..+.+++++|+++||.++.
T Consensus 79 g~~~v~~~~g-------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 79 GVKAVWLQPG-------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp T-SEEEE-TT-------S--HHHHHHHHHTT-EEEE
T ss_pred CCCEEEEEcc-------hHHHHHHHHHHHcCCEEEe
Confidence 4555555544 2233699999999999884
No 264
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=32.17 E-value=4.6e+02 Score=25.09 Aligned_cols=59 Identities=7% Similarity=0.121 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCCCC
Q 023606 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQGSK 260 (280)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G~L 260 (280)
+.+.++.+.+.+++ +++...+..+-|++..-++-..+.+.|+++|+.++.=..++.+.+
T Consensus 148 d~~~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~ 206 (409)
T KOG0053|consen 148 DVDDLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN 206 (409)
T ss_pred chhhHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc
Confidence 55666666665544 356777888888887666655789999999999999888887743
No 265
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=31.99 E-value=4.5e+02 Score=24.96 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=54.7
Q ss_pred hHHHHHHHHhcccCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC-c--hh---HHHH
Q 023606 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-N--EG---FIDG 182 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~-~--~~---~~~~ 182 (280)
|+.|-++|++.....++ +-++|.|=+.. ..-.+.+..-+++.-++++ ++++.+|.|.... . .+ ..++
T Consensus 83 ~~kL~~~I~~~~~~~~p~~~I~V~tTC~~---~iIGdDi~~v~~~~~~~~~---~pvi~v~t~gf~g~s~~~G~~~a~~a 156 (421)
T cd01976 83 DKKLAKAIDEAYELFPLNKGISVQSECPV---GLIGDDIEAVARKASKELG---IPVVPVRCEGFRGVSQSLGHHIANDA 156 (421)
T ss_pred HHHHHHHHHHHHHhCCCccEEEEECCChH---HHhccCHHHHHHHHHHhhC---CCEEEEeCCCccCCcccHHHHHHHHH
Confidence 88888888876654323 55777766532 2222334444444444444 5888999888632 1 12 2222
Q ss_pred H-HHHH--------HcCcccEEEecCc--cHHHHHHHHHHHHhcCCCEEE
Q 023606 183 L-GDAV--------EQGLVKAVGVSNY--SEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 183 L-~~lk--------~~G~ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~ 221 (280)
+ +.+. +.+.|--||-.++ +.+.+++++ +..++++..
T Consensus 157 i~~~l~~~~~~~~~~~~~VNiiG~~~~~~d~~el~~lL---~~~Gi~v~~ 203 (421)
T cd01976 157 IRDHILGKRNEFEPTPYDVNIIGDYNIGGDAWASRILL---EEMGLRVVA 203 (421)
T ss_pred HHHHHhccCCccCCCCCeEEEEecCCCCccHHHHHHHH---HHcCCeEEE
Confidence 2 2222 1356888885554 334455554 445665543
No 266
>KOG2965 consensus Arginase [Amino acid transport and metabolism]
Probab=31.82 E-value=2.3e+02 Score=25.55 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEec
Q 023606 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS 198 (280)
=+..|+.||+ -.|.+|..|.+....+++.-.+++.-++=+-|++|
T Consensus 194 E~~iLk~lgI---~~fsm~~Vdk~GI~~Vme~a~~~v~~~~~rpihlS 238 (318)
T KOG2965|consen 194 EHAILKELGI---AAFSMHEVDKYGIQKVMEMAMELVNPGTRRPIHLS 238 (318)
T ss_pred HHHHHHhcCc---ceEeehhhHhhhHHHHHHHHHHHhcCCCccceeEE
Confidence 3567888885 67899999988899999998899988888888887
No 267
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=31.67 E-value=4.5e+02 Score=24.83 Aligned_cols=113 Identities=20% Similarity=0.248 Sum_probs=61.9
Q ss_pred EcccccCCCCCCCCchhhHHHHHHHHhcccCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecC
Q 023606 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWA 171 (280)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~p 171 (280)
++.-.+|. |+.|-++|++.....|+ +-++|.|=+. ...-.+.+..-+++.-++.+ .++++.+|.|
T Consensus 64 E~d~VfGg---------~~~L~~aI~~~~~~~p~p~~i~V~~tc~---~~liGdDi~~v~~~~~~~~~--~~~vi~v~tp 129 (415)
T cd01977 64 ESHVVFGG---------EKKLKKNIIEAFKEFPDIKRMTVYTTCT---TALIGDDIKAVAKEVMEELP--DVDIFVCNAP 129 (415)
T ss_pred ccceeecc---------HHHHHHHHHHHHHhCCCCcEEEEECCCc---hhhhcCCHHHHHHHHHHhcC--CCeEEEEeCC
Confidence 34456786 88888888876543322 3466776664 23334445555555444443 2689999988
Q ss_pred CCCCc---hhH---HHH-HHHHH--------HcCcccEEEecCccHHHHHHHHHHHHhcCCCEE
Q 023606 172 GIWGN---EGF---IDG-LGDAV--------EQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (280)
Q Consensus 172 d~~~~---~~~---~~~-L~~lk--------~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (280)
+.... .+. .++ ++++. +++.|--||-.++ +..++++.+..+..|+++.
T Consensus 130 gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~-~~d~~ei~~lL~~~Gl~v~ 192 (415)
T cd01977 130 GFAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNI-QGDTEVLQKYFERMGIQVL 192 (415)
T ss_pred CcCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCC-cccHHHHHHHHHHcCCeEE
Confidence 87331 122 112 23333 2467888884443 3334444444555666654
No 268
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=31.66 E-value=3.6e+02 Score=25.17 Aligned_cols=96 Identities=17% Similarity=0.179 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCC--
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGI-- 217 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~-- 217 (280)
...+++.++.-+++.|++.|++.-| ...+-+.| ... -..|+.+|...++...++..+...+
T Consensus 4 m~~~~e~L~~~~~~vl~~~G~~ee~-----------A~~vA~~l---v~a---d~~G~~SHGv~r~p~yi~~l~~G~i~~ 66 (349)
T COG2055 4 MKVSAEELKALIEEVLRKAGVPEED-----------ARAVADVL---VAA---DLRGVDSHGVGRLPGYVRRLKAGKINP 66 (349)
T ss_pred eEecHHHHHHHHHHHHHHcCCCHHH-----------HHHHHHHH---HHH---HhcCCcccchHHHHHHHHHHHcCCcCC
Confidence 3467899999999999999975322 12222222 222 2457888888888888887766554
Q ss_pred --CEEEEcccCCc--cCCCc---------chhhHHHHHHHcCCeEEEc
Q 023606 218 --PLASNQVNYSL--IYRKP---------EENGVKAACDELGITLIAY 252 (280)
Q Consensus 218 --~~~~~q~~~n~--~~~~~---------~~~~l~~~~~~~gi~i~a~ 252 (280)
.|.+++.-=.. +|-+. -...+++.|+++||++++-
T Consensus 67 ~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav 114 (349)
T COG2055 67 DAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAV 114 (349)
T ss_pred CCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEE
Confidence 24444322222 11110 0014799999999998874
No 269
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=31.63 E-value=2.7e+02 Score=22.32 Aligned_cols=156 Identities=14% Similarity=0.066 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccC-CCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYG-SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg-~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
+|...+.++.|++.|.+.|++--..- +|.-.-.| .-..+-+.|+.... +-.++|=.|... . .+.+.+.+-
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~H-di~tL~e~l~~~~~---~~~i~leiK~~~----~-~~~~~~~l~ 82 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLTKDGVLVVIH-DIPTLEEVLELVKG---GVGLNIELKEPT----R-YPGLEAKVA 82 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEc-CCCCHHHHHHhccc---CcEEEEEECCCC----C-chhHHHHHH
Confidence 37888999999999999888543332 11100000 01123333433321 134666666531 1 334555566
Q ss_pred HHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCC
Q 023606 153 DSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (280)
+.+++.+. .+-+++...+ . +.+..+++.-.=-.+|+...+..........+.. ..+..+..++..+.
T Consensus 83 ~~i~~~~~--~~~v~i~s~~----~---~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~-- 149 (189)
T cd08556 83 ELLREYGL--EERVVVSSFD----H---EALRALKELDPEVPTGLLVDKPPLDPLLAELARA--LGADAVNPHYKLLT-- 149 (189)
T ss_pred HHHHHcCC--cCCEEEEeCC----H---HHHHHHHHhCCCCcEEEEeecCcccchhhhHHHh--cCCeEEccChhhCC--
Confidence 66666652 2444444332 2 2333333331111233332221111110001111 23455555554432
Q ss_pred cchhhHHHHHHHcCCeEEEccc
Q 023606 233 PEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 233 ~~~~~l~~~~~~~gi~i~a~sp 254 (280)
..+++.|+++|+.+++|..
T Consensus 150 ---~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 150 ---PELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred ---HHHHHHHHHcCCEEEEEcC
Confidence 2589999999999999964
No 270
>PRK10551 phage resistance protein; Provisional
Probab=31.61 E-value=1.8e+02 Score=28.50 Aligned_cols=114 Identities=13% Similarity=0.139 Sum_probs=65.1
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCC--CCCchhHHHHHHHHHHcCcccEEEecCcc--HH
Q 023606 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQGLVKAVGVSNYS--EK 203 (280)
Q Consensus 128 ~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd--~~~~~~~~~~L~~lk~~G~ir~iGvS~~~--~~ 203 (280)
.+.|+-.+.. .....+.+...+.+.++.++.+..- +.+.-.+ ........+.++.|++.|. .|.+.+|. ..
T Consensus 349 ~~~lsINis~--~~l~~~~f~~~l~~~l~~~~~~~~~-LvlEItE~~~~~~~~~~~~l~~Lr~~G~--~ialDDFGtg~s 423 (518)
T PRK10551 349 GAKLGINISP--AHLHSDSFKADVQRLLASLPADHFQ-IVLEITERDMVQEEEATKLFAWLHSQGI--EIAIDDFGTGHS 423 (518)
T ss_pred CcEEEEEeCH--HHHCCchHHHHHHHHHHhCCCCcce-EEEEEechHhcCCHHHHHHHHHHHHCCC--EEEEECCCCCch
Confidence 4455555532 2344455777888888888875432 2232222 2333556788999999996 45555553 23
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCccCC---Ccch----hhHHHHHHHcCCeEEEc
Q 023606 204 RLRNAYEKLKKRGIPLASNQVNYSLIYR---KPEE----NGVKAACDELGITLIAY 252 (280)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~q~~~n~~~~---~~~~----~~l~~~~~~~gi~i~a~ 252 (280)
.+..+.+ .+++++.+.-+.... +... ..+++.|++.|+.+++=
T Consensus 424 sl~~L~~------l~vD~lKID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE 473 (518)
T PRK10551 424 ALIYLER------FTLDYLKIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE 473 (518)
T ss_pred hHHHHHh------CCCCEEEECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3333322 366666665544332 1111 24788888999888875
No 271
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=31.46 E-value=1.9e+02 Score=22.40 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=44.9
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CcccEEEEecCCC--CCchhHHHHHHHHHHc
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~---d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~ 189 (280)
|=-+.|+-|++. .-..+..+++.+++.++.+.. ...|++++-.+.. .+..++.+.|.+|.+.
T Consensus 48 R~G~~VsKK~~~--~AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 48 RFGISISQKVSK--KAVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred EEEEEEeccccc--chhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 556777777643 246677788899888887642 3589999998875 4567788888777665
No 272
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=31.45 E-value=1.1e+02 Score=27.26 Aligned_cols=16 Identities=25% Similarity=0.503 Sum_probs=12.0
Q ss_pred hHHHHHHHcCCeEEEc
Q 023606 237 GVKAACDELGITLIAY 252 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~ 252 (280)
++.+.|+++|+.++..
T Consensus 131 ~~~~~~~~~gl~~I~l 146 (259)
T PF00290_consen 131 ELREAAKKHGLDLIPL 146 (259)
T ss_dssp HHHHHHHHTT-EEEEE
T ss_pred HHHHHHHHcCCeEEEE
Confidence 5788899999987765
No 273
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=31.26 E-value=2e+02 Score=20.57 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=38.4
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcC-cccEEEecCc-cHHHHHHHHHH
Q 023606 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG-LVKAVGVSNY-SEKRLRNAYEK 211 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G-~ir~iGvS~~-~~~~i~~~~~~ 211 (280)
++.++.+.....|++++....+ .....+.++++++.+ .++-|-+++. +.....++++.
T Consensus 33 ~~~~~~~~~~~~d~iiid~~~~--~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~ 92 (112)
T PF00072_consen 33 EEALELLKKHPPDLIIIDLELP--DGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRA 92 (112)
T ss_dssp HHHHHHHHHSTESEEEEESSSS--SSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHT
T ss_pred HHHHHHhcccCceEEEEEeeec--cccccccccccccccccccEEEecCCCCHHHHHHHHHC
Confidence 3444444445599999986432 255667777777776 7888888876 45666666543
No 274
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=31.25 E-value=2.7e+02 Score=22.97 Aligned_cols=84 Identities=13% Similarity=-0.060 Sum_probs=48.2
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-CCchhHHHHHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVE 188 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~L~~lk~ 188 (280)
=+.+|++|++.... -+.|..++++- -+.-.+...+.++.+.. .. +++..+ .+...+.+.++.+.+
T Consensus 34 a~~~a~~L~~~~~~--~D~VL~Spa~R----------a~QTae~v~~~~~~~~~-~~-~~~l~p~~d~~~~l~~l~~~~d 99 (163)
T COG2062 34 AELVAAWLAGQGVE--PDLVLVSPAVR----------ARQTAEIVAEHLGEKKV-EV-FEELLPNGDPGTVLDYLEALGD 99 (163)
T ss_pred HHHHHHHHHhcCCC--CCEEEeChhHH----------HHHHHHHHHHhhCcccc-ee-ccccCCCCCHHHHHHHHHHhcc
Confidence 35789999998863 25566666651 34445555566662211 11 112111 334556666666665
Q ss_pred cCcccEEEecCccHHHHHHHH
Q 023606 189 QGLVKAVGVSNYSEKRLRNAY 209 (280)
Q Consensus 189 ~G~ir~iGvS~~~~~~i~~~~ 209 (280)
-+..+.+-+|+|..-+-+.
T Consensus 100 --~v~~vllVgH~P~l~~l~~ 118 (163)
T COG2062 100 --GVGSVLLVGHNPLLEELAL 118 (163)
T ss_pred --cCceEEEECCCccHHHHHH
Confidence 4889999999875444443
No 275
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=31.22 E-value=39 Score=28.73 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=31.1
Q ss_pred HHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCC
Q 023606 179 FIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGI 247 (280)
Q Consensus 179 ~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi 247 (280)
.++.|+..+-+|+|+.+ ++..+..+++.....+..-.+.|+-+|+--..-+-+.++..|+++++
T Consensus 4 Fle~Lep~Il~~~i~~l-----pp~v~k~lv~~y~~~~~~~~lE~lI~~LD~~~LDidq~i~lC~~~~L 67 (196)
T PF12816_consen 4 FLECLEPFILSGKIKSL-----PPEVFKALVEHYASKGRLERLEQLILHLDPSSLDIDQVIKLCKKHGL 67 (196)
T ss_pred HHHHHHHHHHcCCCCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHhcCHHHHHHHHHHCCC
Confidence 46677777777777754 44555555554433321111112222221111122257777777766
No 276
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=31.05 E-value=2.6e+02 Score=25.07 Aligned_cols=42 Identities=21% Similarity=0.240 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIK 118 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~ 118 (280)
..+.+-...|+++|+++||++ .+|-|+..|+..-|.++ ..|+
T Consensus 203 Gla~AN~laA~~aGa~~vd~s-~~GlGe~aGN~~~E~~v-~~L~ 244 (280)
T cd07945 203 DLAVANVLAAVKAGIKGLHTT-VNGLGERAGNAPLASVI-AVLK 244 (280)
T ss_pred CHHHHHHHHHHHhCCCEEEEe-cccccccccCccHHHHH-HHHH
Confidence 567778889999999999987 56666554555556555 4454
No 277
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=30.92 E-value=4.2e+02 Score=24.29 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHC-CCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 74 MKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 74 ~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
.++..++++..-+. |++-+--+. |.... .+...+...++....-.....+-|.|+.. ...+..+.+.+-
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl----~~d~~L~~ll~~L~~i~~~~~IRi~tr~~----~~~P~rit~el~ 213 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLM----AKDHELEWLLKRLEEIPHLVRLRIGTRLP----VVIPQRITDELC 213 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--Ccccc----CCHHHHHHHHHHHHhcCCccEEEeecCCC----ccCchhcCHHHH
Confidence 46777777776544 776444221 22111 11333444444332100124567788763 223344445555
Q ss_pred HHHHHhCCCcccEEEEecCCC-CCchhHHHHHHHHHHcCcccEEEec-------CccHHHHHHHHHHHHhcCCCE
Q 023606 153 DSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVGVS-------NYSEKRLRNAYEKLKKRGIPL 219 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~L~~lk~~G~ir~iGvS-------~~~~~~i~~~~~~~~~~~~~~ 219 (280)
+.|++.|...+. ..|.-.. .-.+++.++++.|++.|.. +++- |.+.+.+.++.+.+...++.+
T Consensus 214 ~~L~~~~~~~~~--vsh~nh~~Ei~~~~~~ai~~L~~aGi~--v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~p 284 (331)
T TIGR00238 214 ELLASFELQLML--VTHINHCNEITEEFAEAMKKLRTVNVT--LLNQSVLLRGVNDRAQILAKLSIALFKVGIIP 284 (331)
T ss_pred HHHHhcCCcEEE--EccCCChHhCCHHHHHHHHHHHHcCCE--EEeecceECCcCCCHHHHHHHHHHHhhcCeec
Confidence 667776654332 3343221 2357899999999999963 3322 235677777777766555543
No 278
>PRK07360 FO synthase subunit 2; Reviewed
Probab=30.92 E-value=4.4e+02 Score=24.53 Aligned_cols=24 Identities=8% Similarity=-0.022 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (280)
.+.++..+..+.+.+.|++.|--.
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l~ 114 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCIQ 114 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEc
Confidence 677899999999999999977644
No 279
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=30.80 E-value=2.6e+02 Score=28.20 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=43.7
Q ss_pred HHhCCCcccEEEEe-cCCCCCchhHHHHHHHHHHcCcccEEEec-CccHHHHHHHHHHHHhcCCCEEEEcccCC
Q 023606 156 FRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (280)
Q Consensus 156 ~~Lg~d~iDl~~lH-~pd~~~~~~~~~~L~~lk~~G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (280)
..+|.|++=+++.. .|...+.+.....+.+....-.++.+||- +-+++.+.++.+. ..++++|++-+
T Consensus 20 ~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~-----~~ld~vQLHG~ 88 (610)
T PRK13803 20 VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKK-----NGIDFVQLHGA 88 (610)
T ss_pred HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHh-----cCCCEEEECCC
Confidence 55899999987554 34334455513333332222347889986 6688888888775 57899998864
No 280
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.77 E-value=35 Score=36.57 Aligned_cols=89 Identities=10% Similarity=0.076 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHcCcccE-EEecC-cc--HHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 176 NEGFIDGLGDAVEQGLVKA-VGVSN-YS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 176 ~~~~~~~L~~lk~~G~ir~-iGvS~-~~--~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
...++++|.++++.|+|.. +|=-+ .. ...++.++.. .|-++.|.+.+....-...+.+|++.++|.-.
T Consensus 599 ~~kVl~al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsT--------ac~~LdyiVVdt~e~aq~cI~fl~~~nLgraT 670 (1293)
T KOG0996|consen 599 RNKVLDALMRLKESGRIPGFYGRLGDLGAIDEKYDVAIST--------ACARLDYIVVDTIETAQECINFLKKNNLGRAT 670 (1293)
T ss_pred hhHHHHHHHHHHHcCCCCccccccccccccchHHHHHHHH--------hccccceEEeccHHHHHHHHHHHHHcCCCcee
Confidence 4578999999999998853 33111 11 1333334332 23334444444433334689999999999999
Q ss_pred cccCcCCC-----CCCCCCCCCCccCC
Q 023606 252 YCPIAQGS-----KPRKRNWWFHCLKL 273 (280)
Q Consensus 252 ~spl~~G~-----L~~~~~~~~~~~~~ 273 (280)
+-+|..=. ++. ...+.+.|++
T Consensus 671 Fi~LDki~~~~~~l~~-i~tpenvPRL 696 (1293)
T KOG0996|consen 671 FIILDKIKDHQKKLAP-ITTPENVPRL 696 (1293)
T ss_pred EEehHhhhhhhhccCC-CCCCCCcchH
Confidence 99997655 555 4455555554
No 281
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=30.75 E-value=4.5e+02 Score=24.58 Aligned_cols=24 Identities=8% Similarity=-0.032 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (280)
.+.++..++++.-.+.|+..|+.+
T Consensus 23 ~s~e~k~~ia~~L~~~GV~~IE~G 46 (378)
T PRK11858 23 FTNEEKLAIARMLDEIGVDQIEAG 46 (378)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEe
Confidence 344788888888889999999976
No 282
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.65 E-value=1.1e+02 Score=23.92 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEE-EEecCC-CCCCCCCHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVT-VATKFA-ALPWRLGRQSVLAA 150 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~-I~tK~~-~~~~~~~~~~i~~~ 150 (280)
.-+++.+++..+++.|-+.|= +|+|.| +-.+++...++........++...+ +.+... ....+...+ ..-
T Consensus 20 ~i~~aa~~i~~~~~~gg~i~~----~G~G~S--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~ 91 (138)
T PF13580_consen 20 AIEKAADLIAEALRNGGRIFV----CGNGHS--AAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYD--EGF 91 (138)
T ss_dssp HHHHHHHHHHHHHHTT--EEE----EESTHH--HHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGG--GTH
T ss_pred HHHHHHHHHHHHHHCCCEEEE----EcCchh--hhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchh--hHH
Confidence 346788899999999999876 566644 1134666677765544332111111 111100 000001111 111
Q ss_pred HHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEec
Q 023606 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS 198 (280)
.+..++.+....=|++++-... -....++++++..|+.|. +-||++
T Consensus 92 ~~~~~~~~~~~~gDvli~iS~S-G~s~~vi~a~~~Ak~~G~-~vIalT 137 (138)
T PF13580_consen 92 ARQLLALYDIRPGDVLIVISNS-GNSPNVIEAAEEAKERGM-KVIALT 137 (138)
T ss_dssp HHHHHHHTT--TT-EEEEEESS-S-SHHHHHHHHHHHHTT--EEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEECCC-CCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 2233333345566888887654 235677888888888873 445543
No 283
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=30.62 E-value=4.5e+02 Score=24.50 Aligned_cols=39 Identities=8% Similarity=0.053 Sum_probs=18.3
Q ss_pred CEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCc
Q 023606 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIA 256 (280)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~ 256 (280)
+..++..+-|+.-.-.+..++.+.|+++|+-++.=..+.
T Consensus 138 klV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~ 176 (382)
T TIGR02080 138 KLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFL 176 (382)
T ss_pred eEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCc
Confidence 344444444443322222346666666666555544443
No 284
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=30.62 E-value=3e+02 Score=25.52 Aligned_cols=80 Identities=15% Similarity=0.090 Sum_probs=43.7
Q ss_pred HHHHHHHCCCCeEEcccccC---------CCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 023606 80 AFDTSLDNGITFFDTAEVYG---------SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (280)
Q Consensus 80 ~l~~A~~~Gin~~DTA~~Yg---------~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (280)
.++...++|+|.+.-+-.-+ .+.+ .+.+-++++.....+ -..+-+--=+|. ...+.+.+++.
T Consensus 110 ~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~s------~~~~~~a~~~l~~~g-~~~v~~dli~Gl--Pgqt~~~~~~t 180 (375)
T PRK05628 110 FFAALRAAGFTRVSLGMQSAAPHVLAVLDRTHT------PGRAVAAAREARAAG-FEHVNLDLIYGT--PGESDDDWRAS 180 (375)
T ss_pred HHHHHHHcCCCEEEEecccCCHHHHHHcCCCCC------HHHHHHHHHHHHHcC-CCcEEEEEeccC--CCCCHHHHHHH
Confidence 44444467999887554333 2222 333334444432110 112322222232 46788888888
Q ss_pred HHHHHHHhCCCcccEEEEe
Q 023606 151 LKDSLFRLGLSSVELYQLH 169 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH 169 (280)
++..+ +++.+++.+|.+.
T Consensus 181 l~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 181 LDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred HHHHH-hcCCCEEEeeeee
Confidence 87655 5889999888876
No 285
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.54 E-value=4.3e+02 Score=24.31 Aligned_cols=97 Identities=15% Similarity=0.108 Sum_probs=62.0
Q ss_pred EEEEecCCC------------CCchhHHHHHHHHHHc-Cc---ccEEEecC--ccHHHHHHHHHHHHhcCCCEEEEcccC
Q 023606 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNY 226 (280)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~lk~~-G~---ir~iGvS~--~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (280)
.+.||.++. .+.+++++.++++.+. +. |+++=+.. .+.+.++++.+.+.. ....++-++|
T Consensus 211 aiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~~v~i~yvlI~g~NDs~ed~~~La~llk~--~~~~VnLIpy 288 (343)
T PRK14469 211 ALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGNRVTIEYILIKGFNDEIEDAKKLAELLKG--LKVFVNLIPV 288 (343)
T ss_pred EEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhc--cCcEEEEEec
Confidence 356777664 2356788888877655 32 45555554 456788888877653 3456777899
Q ss_pred CccCCC---cchh---hHHHHHHHcCCeEEEcccCc------CCCCCCC
Q 023606 227 SLIYRK---PEEN---GVKAACDELGITLIAYCPIA------QGSKPRK 263 (280)
Q Consensus 227 n~~~~~---~~~~---~l~~~~~~~gi~i~a~spl~------~G~L~~~ 263 (280)
|+.... +... .+.+..+++|+.+......+ +|.|..+
T Consensus 289 np~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr~~~g~di~aaCGqL~~~ 337 (343)
T PRK14469 289 NPTVPGLEKPSRERIERFKEILLKNGIEAEIRREKGSDIEAACGQLRRR 337 (343)
T ss_pred CCCCccCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcchhhcCccchhh
Confidence 986532 2221 35666778899998886554 4666554
No 286
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=30.50 E-value=3.7e+02 Score=25.47 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcC--cccEEE-e-cCccHHHHHHHHHHHHhcCC
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--LVKAVG-V-SNYSEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G--~ir~iG-v-S~~~~~~i~~~~~~~~~~~~ 217 (280)
++++...+-+...++. .+++++-.|-... -|+.+.+|.+.- .+.-.| = ..++++.+.++++. .
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~---D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~-----~ 327 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDED---DWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEK-----K 327 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCc---CHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHh-----C
Confidence 3444444444444443 4567777664322 266677777662 343333 2 12468888888765 3
Q ss_pred CEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
..+++|+..+-+-.-.+..++...|+++|+.++.
T Consensus 328 a~d~v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 328 AANALLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred CCCEEEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 4666666665543322333688899999999864
No 287
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=30.47 E-value=1.8e+02 Score=25.83 Aligned_cols=46 Identities=15% Similarity=0.042 Sum_probs=36.3
Q ss_pred CcccEEEEecCCC-C---CchhHHHHHHHHHHcCcccEEEecCccHHHHHHH
Q 023606 161 SSVELYQLHWAGI-W---GNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNA 208 (280)
Q Consensus 161 d~iDl~~lH~pd~-~---~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~ 208 (280)
...|+++|..|-. . ...++++-|.+|+++|+ .|=+.+|+...+.+.
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~--tIl~vtHDL~~v~~~ 205 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK--TVLMVTHDLGLVMAY 205 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC--EEEEEeCCcHHhHhh
Confidence 5689999998865 2 35689999999999984 667788888777665
No 288
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=30.45 E-value=2e+02 Score=21.88 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=43.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC---CcccEEEEecCCC--CCchhHHHHHHHHHHc
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL---SSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~---d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~ 189 (280)
|=-+.|+-|++. -..+..+++.+++.++.... ...|++++-.+.. .+..++.+.|..|.+.
T Consensus 39 R~GisVsKKvgk---AV~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 39 RVGISVSKKVGN---AVVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred EEEEEEecccCc---hhhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 667888888863 56677788888888876632 3579999988765 4456677777766554
No 289
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=30.35 E-value=2.5e+02 Score=23.66 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
++++...+.+.|.++|..|+=|+.-|..+.+ -...-+.+.+.++ . +-.+.++-- -.+.+...+.++
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~a--t~~~v~~~~~~~~--~----~v~ik~aGG------ikt~~~~l~~~~ 194 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGA--TVEDVKLMKEAVG--G----RVGVKAAGG------IRTLEDALAMIE 194 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCC--CHHHHHHHHHHhC--C----CceEEEeCC------CCCHHHHHHHHH
Confidence 3578888999999999999999977763222 0011234444443 1 223333321 126777777777
Q ss_pred HHHHHhCCC
Q 023606 153 DSLFRLGLS 161 (280)
Q Consensus 153 ~sl~~Lg~d 161 (280)
.-..|+|++
T Consensus 195 ~g~~riG~s 203 (203)
T cd00959 195 AGATRIGTS 203 (203)
T ss_pred hChhhccCC
Confidence 777777763
No 290
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=30.21 E-value=1.4e+02 Score=27.19 Aligned_cols=126 Identities=20% Similarity=0.121 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHH---CCCCeEE---cccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHH
Q 023606 75 KAAKAAFDTSLD---NGITFFD---TAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVL 148 (280)
Q Consensus 75 ~~~~~~l~~A~~---~Gin~~D---TA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~ 148 (280)
+.+.+++..=+. ....+|. +++.|.+-+. +..+-+.+-....+ .-..+.|+||... +.
T Consensus 66 ~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~------~~~ltR~ilei~~~-~~~~v~I~TKS~l---------v~ 129 (297)
T COG1533 66 ENLLELLERELRKPGPKRTVIAISSVTDPYQPIEK------EYRLTRKILEILLK-YGFPVSIVTKSAL---------VL 129 (297)
T ss_pred hhHHHHHHHHHhhccCCceEEEEecCCCCCCcchH------HHHHHHHHHHHHHH-cCCcEEEEECCcc---------hh
Confidence 446777777665 2233454 4567887333 33333333222211 1267999999864 34
Q ss_pred HHHHHHHHHhCCCcccEEEEe-cCC--------C--CCchhHHHHHHHHHHcCcccEEEecC----ccHHHHHHHHHHHH
Q 023606 149 AALKDSLFRLGLSSVELYQLH-WAG--------I--WGNEGFIDGLGDAVEQGLVKAVGVSN----YSEKRLRNAYEKLK 213 (280)
Q Consensus 149 ~~l~~sl~~Lg~d~iDl~~lH-~pd--------~--~~~~~~~~~L~~lk~~G~ir~iGvS~----~~~~~i~~~~~~~~ 213 (280)
+.++-.++-=..+.+++-+== ..| + .+.++=++++.+|.+.|.=-.+=|+- .+-+.+++.+..+.
T Consensus 130 RDld~l~~~~~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi~~~v~v~PIiP~~~d~e~e~~l~~~~ 209 (297)
T COG1533 130 RDLDLLLELAERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGIPVGLFVAPIIPGLNDEELERILEAAA 209 (297)
T ss_pred hhHHHHHhhhhccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCCeEEEEEecccCCCChHHHHHHHHHHH
Confidence 444433321111223332211 112 1 33667789999999999755555542 12255665555544
Q ss_pred hcC
Q 023606 214 KRG 216 (280)
Q Consensus 214 ~~~ 216 (280)
..+
T Consensus 210 ~ag 212 (297)
T COG1533 210 EAG 212 (297)
T ss_pred HcC
Confidence 443
No 291
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=30.08 E-value=1.6e+02 Score=25.04 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCCeEEc
Q 023606 75 KAAKAAFDTSLDNGITFFDT 94 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DT 94 (280)
|.....++.|++.|...+++
T Consensus 14 ENTl~af~~A~~~Gad~iE~ 33 (226)
T cd08568 14 ENTLEAFKKAIEYGADGVEL 33 (226)
T ss_pred cchHHHHHHHHHcCcCEEEE
Confidence 67778999999999988874
No 292
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=30.05 E-value=3.6e+02 Score=23.27 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=46.3
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecC---ccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhH
Q 023606 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSN---YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGV 238 (280)
Q Consensus 162 ~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~---~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l 238 (280)
...++..|.. +..|.+-..--.+..++++. .++.++.++.+.++..++++.+....++. .-+
T Consensus 150 ~~~~v~~h~~--------~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~-------~~~ 214 (256)
T PF01297_consen 150 GRPVVVYHDA--------FQYFAKRYGLKVIGVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSS-------KLA 214 (256)
T ss_dssp GGEEEEEEST--------THHHHHHTT-EEEEEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-T-------HHH
T ss_pred CCeEEEEChH--------HHHHHHhcCCceeeeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCCh-------HHH
Confidence 3566777753 34443322221223333443 46789999988888888877765444322 123
Q ss_pred HHHHHHcCCeEEEcccCcCC
Q 023606 239 KAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 239 ~~~~~~~gi~i~a~spl~~G 258 (280)
-..+++.|+.++.-.|++.+
T Consensus 215 ~~la~~~g~~vv~ld~l~~~ 234 (256)
T PF01297_consen 215 EALAKETGVKVVYLDPLGGG 234 (256)
T ss_dssp HHHHHCCT-EEEESSTTCST
T ss_pred HHHHHHcCCcEEEeCCCcCC
Confidence 44567889999999999443
No 293
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=30.05 E-value=2.6e+02 Score=24.39 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=39.6
Q ss_pred chhHHHHHHHHHHc-CcccEEEecC----cc-HHHHHHHHHHHHhcCCCEEEEcccCCccCCCcch-----hhHHHHHHH
Q 023606 176 NEGFIDGLGDAVEQ-GLVKAVGVSN----YS-EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-----NGVKAACDE 244 (280)
Q Consensus 176 ~~~~~~~L~~lk~~-G~ir~iGvS~----~~-~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-----~~l~~~~~~ 244 (280)
++.+.++++.+++. |++--+|+.+ |+ .+++..+++.+.+.+++..++..-.-==|..|.. .++.+.|++
T Consensus 13 n~~l~~~~~~~k~~~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~ 92 (223)
T PF06415_consen 13 NPVLLEAIEHAKKNGGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAE 92 (223)
T ss_dssp SHHHHHHHHHHCCTT--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHh
Confidence 45556666666654 4556667654 22 4777777777777776655443322111222211 246677777
Q ss_pred cCCeEEE
Q 023606 245 LGITLIA 251 (280)
Q Consensus 245 ~gi~i~a 251 (280)
.|++-++
T Consensus 93 ~~~g~IA 99 (223)
T PF06415_consen 93 IGIGRIA 99 (223)
T ss_dssp HTCTEEE
T ss_pred hCCceEE
Confidence 7765444
No 294
>KOG3131 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.85 E-value=4e+02 Score=23.70 Aligned_cols=113 Identities=14% Similarity=0.042 Sum_probs=65.3
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcC--------c-ccEEE
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQG--------L-VKAVG 196 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G--------~-ir~iG 196 (280)
|++..=.++........+.+.+..-++.+++.|.-+ +-...+|++|++.- + |..+|
T Consensus 25 rG~~~k~~dt~iD~~~v~~~~fq~klensr~kle~S---------------~Fl~~~lEqLq~~l~~~~~piek~~vclg 89 (281)
T KOG3131|consen 25 RGRHKKESDTLIDCPDVNVEKFQPKLENSRTKLEQS---------------DFLLVALEQLQQQLEGIRKPIEKIIVCLG 89 (281)
T ss_pred cCCCccccccccCcccccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHhHHHhhhccchhheEEEEe
Confidence 344443566654445678889999999999998742 22344555555432 3 48889
Q ss_pred ecCccH-----HHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCC
Q 023606 197 VSNYSE-----KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 197 vS~~~~-----~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G 258 (280)
+.++.. -|+--+++.-+...+.. ...+++|+-... .-.++.+..|--++.--+.+.-
T Consensus 90 lG~f~~~~~a~~Qlal~iei~r~fk~~~----~~~s~fDPvf~k-~E~eyLeslG~cvLs~~e~~~~ 151 (281)
T KOG3131|consen 90 LGPFSRTYHALHQLALVIEIHRHFKIRD----VEASYFDPVFRK-SEKEYLESLGGCVLSKDEAGKH 151 (281)
T ss_pred eccccccccHHHHHHHHHHHHHHhcccc----ceeeeeCcchhh-hHHHHHHhcCCeEeccCccccc
Confidence 988742 33333333333222322 233344432221 3467888888888777666654
No 295
>PRK13130 H/ACA RNA-protein complex component Nop10p; Reviewed
Probab=29.82 E-value=40 Score=22.69 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=13.3
Q ss_pred CCCCCCCCccCCCCCCC
Q 023606 262 RKRNWWFHCLKLSDENQ 278 (280)
Q Consensus 262 ~~~~~~~~~~~~~~~~~ 278 (280)
|......||++||++|-
T Consensus 24 G~~t~~~~P~rfSp~D~ 40 (56)
T PRK13130 24 GGKTKNPHPPRFSPEDK 40 (56)
T ss_pred CCCCCCCCCCCCCCCCc
Confidence 34567789999999973
No 296
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=29.76 E-value=2e+02 Score=21.65 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCc---cHHHHHHHHHHHHhc
Q 023606 149 AALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY---SEKRLRNAYEKLKKR 215 (280)
Q Consensus 149 ~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~---~~~~i~~~~~~~~~~ 215 (280)
..+...|++-|-+-++ +-. ..+.+++.+. ..+-+...||+|.. ....+.++++..++.
T Consensus 17 ~~~~~~l~~~G~~V~~---lg~--~~~~~~l~~~----~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 17 NIVARALRDAGFEVID---LGV--DVPPEEIVEA----AKEEDADAIGLSGLLTTHMTLMKEVIEELKEA 77 (119)
T ss_pred HHHHHHHHHCCCEEEE---CCC--CCCHHHHHHH----HHHcCCCEEEEeccccccHHHHHHHHHHHHHc
Confidence 4566677777754322 221 1233333333 34446677777754 334444444444433
No 297
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=29.63 E-value=2.1e+02 Score=27.49 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
+.+++.+.++.+.+.|+..+..-=+||- ...+.+.+.+.++
T Consensus 186 ~~~~~~~ai~~lr~~G~~~v~~dli~Gl---------------------------------------Pgqt~e~~~~tl~ 226 (453)
T PRK13347 186 PEEMVARAVELLRAAGFESINFDLIYGL---------------------------------------PHQTVESFRETLD 226 (453)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeEEEeC---------------------------------------CCCCHHHHHHHHH
Q ss_pred HHHHHhCCCcccEEEE----------------ecCCC-CCchhHHHHHHHHHHcCcccEEEecCcc
Q 023606 153 DSLFRLGLSSVELYQL----------------HWAGI-WGNEGFIDGLGDAVEQGLVKAVGVSNYS 201 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~l----------------H~pd~-~~~~~~~~~L~~lk~~G~ir~iGvS~~~ 201 (280)
..+ +|+.++|.+|.+ -.|+. ...+....+.+.|.+.|... +++++|.
T Consensus 227 ~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~fa 290 (453)
T PRK13347 227 KVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHFA 290 (453)
T ss_pred HHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-Eecccee
No 298
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=29.58 E-value=5.8e+02 Score=26.01 Aligned_cols=104 Identities=8% Similarity=0.088 Sum_probs=63.5
Q ss_pred CCCCCccchhhHHHHHHHHHHHHH--CCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCC
Q 023606 63 YWNNFQWDDRKMKAAKAAFDTSLD--NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPW 140 (280)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~A~~--~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~ 140 (280)
+++.+..+....-..+++|.+.++ .|++..-....=..+ .+++-+|-+... . | +
T Consensus 70 vYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDid--------DKIi~~A~~~g~------~--~--------~ 125 (651)
T PTZ00399 70 VYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDID--------DKIIKRAREEKL------S--I--------F 125 (651)
T ss_pred ccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcc--------hHHHHHHHHhCC------C--c--------H
Confidence 344444444455678888888887 586644433222222 677777654321 0 0 0
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc
Q 023606 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (280)
Q Consensus 141 ~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir 193 (280)
.--.+...+.+.+-+++|++.+.|++--- ..-.+++.+..+.|++.|.+=
T Consensus 126 ~el~~~~~~~f~~d~~~Lni~~p~~~~r~---tehi~~ii~~i~~Li~~G~aY 175 (651)
T PTZ00399 126 LELARKWEKEFFEDMKALNVRPPDVITRV---SEYVPEIVDFIQKIIDNGFAY 175 (651)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCc---CccHHHHHHHHHHHHHCCCEE
Confidence 11134566778888899998877643222 134678999999999999763
No 299
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=29.47 E-value=1.7e+02 Score=23.60 Aligned_cols=81 Identities=22% Similarity=0.294 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHH--cCcccEEEecCccHHHHHHHHHHHHhcCC
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE--QGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~--~G~ir~iGvS~~~~~~i~~~~~~~~~~~~ 217 (280)
...+.+.+.+.+++.-+.+|+ .++.+|-.. ..++++.+++..+ +|.|-.=|--+|+.-.+..+++. +
T Consensus 22 G~~tl~~i~~~l~~~a~~~g~-~v~~~QSN~-----Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~-----~ 90 (140)
T cd00466 22 GTTTLADIEALLRELAAELGV-EVEFFQSNH-----EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAA-----V 90 (140)
T ss_pred CcCCHHHHHHHHHHHHHHcCC-EEEEEeeCc-----HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHc-----C
Confidence 356788899999999898997 477776642 3678888888865 46777777777877777777776 5
Q ss_pred CEEEEcccCCccCC
Q 023606 218 PLASNQVNYSLIYR 231 (280)
Q Consensus 218 ~~~~~q~~~n~~~~ 231 (280)
...++.+..|-.+.
T Consensus 91 ~~P~VEVHiSNi~a 104 (140)
T cd00466 91 SIPVIEVHISNIHA 104 (140)
T ss_pred CCCEEEEecCCccc
Confidence 66777777766543
No 300
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=29.33 E-value=4e+02 Score=24.45 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALK 152 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~ 152 (280)
+.++..+.++.+.+.|+ .++.|+ +........+.+.+.++
T Consensus 71 s~eeI~e~~~~~~~~G~-------------------------------------~~i~l~---gG~~p~~~~~~~~~i~~ 110 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGA-------------------------------------TEVCIQ---GGIHPDLDGDFYLDILR 110 (343)
T ss_pred CHHHHHHHHHHHHHCCC-------------------------------------CEEEEE---eCCCCCCCHHHHHHHHH
Q ss_pred HHHHHhCCCcccEEE---EecCCCCCchhHHHHHHHHHHcCcccEEEec---------------CccHHHHHHHHHHHHh
Q 023606 153 DSLFRLGLSSVELYQ---LHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS---------------NYSEKRLRNAYEKLKK 214 (280)
Q Consensus 153 ~sl~~Lg~d~iDl~~---lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS---------------~~~~~~i~~~~~~~~~ 214 (280)
...+..--=.+..+. ++..-.....-..+.|++||+.|.-+..+.+ .++.++..+.++.+++
T Consensus 111 ~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~ 190 (343)
T TIGR03551 111 AVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHK 190 (343)
T ss_pred HHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHH
Q ss_pred cCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccC
Q 023606 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPI 255 (280)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl 255 (280)
.|+++.+.-+--.. +...+..+.+.+.++.+.....++++
T Consensus 191 ~Gi~v~s~~i~G~~-Et~ed~~~~l~~lr~l~~~~~~~~~~ 230 (343)
T TIGR03551 191 LGIPTTATIMYGHV-ETPEHWVDHLLILREIQEETGGFTEF 230 (343)
T ss_pred cCCcccceEEEecC-CCHHHHHHHHHHHHHhhHHhCCeeEE
No 301
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=29.32 E-value=5.4e+02 Score=24.97 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHH----HHHhC-CCcccEEEEecCCCCCchhHHHHHHHHHHc-CcccEEEecCccHHHHHHHHHHHHh
Q 023606 141 RLGRQSVLAALKDS----LFRLG-LSSVELYQLHWAGIWGNEGFIDGLGDAVEQ-GLVKAVGVSNYSEKRLRNAYEKLKK 214 (280)
Q Consensus 141 ~~~~~~i~~~l~~s----l~~Lg-~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~-G~ir~iGvS~~~~~~i~~~~~~~~~ 214 (280)
..+.+.+.+.++.. ..+.| .=..|++-|+.... +.+.+...++.+++. +. -+.+.+++++.++++++...
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~-dp~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleaga- 176 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG-DPEKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVA- 176 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC-CHHHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcC-
Confidence 35556666665555 12334 22467777777554 445567777777663 33 47788899999999987642
Q ss_pred cCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 023606 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~sp 254 (280)
+..+.++-... +..+ .+.+.++++|..++...+
T Consensus 177 -d~~plI~Sat~-----dN~~-~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 177 -DRKPLLYAATK-----ENYE-EMAELAKEYNCPLVVKAP 209 (450)
T ss_pred -CCCceEEecCc-----chHH-HHHHHHHHcCCcEEEEch
Confidence 12233332221 1111 467777777877777553
No 302
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=29.31 E-value=3.1e+02 Score=24.86 Aligned_cols=76 Identities=24% Similarity=0.280 Sum_probs=42.8
Q ss_pred HHHHHHHHcCcccEEEecC--c-------------cHHHHHHHHHHHHhcCCC-EEEEcccCCccCCCcchhhHHHHHHH
Q 023606 181 DGLGDAVEQGLVKAVGVSN--Y-------------SEKRLRNAYEKLKKRGIP-LASNQVNYSLIYRKPEENGVKAACDE 244 (280)
Q Consensus 181 ~~L~~lk~~G~ir~iGvS~--~-------------~~~~i~~~~~~~~~~~~~-~~~~q~~~n~~~~~~~~~~l~~~~~~ 244 (280)
+.++.|++.|. ..|.||- . +.+.+.+.++.+.+.+++ +.++-+-..-.+. .+-.++++++++
T Consensus 103 ~~~~~L~~~gl-~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~-~ei~~l~~~~~~ 180 (334)
T TIGR02666 103 RHAKDLKEAGL-KRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVND-DEIVDLAEFAKE 180 (334)
T ss_pred HHHHHHHHcCC-CeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCH-HHHHHHHHHHHh
Confidence 35677888884 5566552 2 234555666666666654 3332111100111 112368999999
Q ss_pred cCCe--EEEcccCcCC
Q 023606 245 LGIT--LIAYCPIAQG 258 (280)
Q Consensus 245 ~gi~--i~a~spl~~G 258 (280)
+|+. ++.+.|++.+
T Consensus 181 ~gv~~~~ie~mp~~~~ 196 (334)
T TIGR02666 181 RGVTLRFIELMPLGEG 196 (334)
T ss_pred cCCeEEEEeccCCCCC
Confidence 9975 5567888766
No 303
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=29.27 E-value=1.7e+02 Score=24.98 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=20.9
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHH---cCcccEEEecCc
Q 023606 162 SVELYQLHWAGIWGNEGFIDGLGDAVE---QGLVKAVGVSNY 200 (280)
Q Consensus 162 ~iDl~~lH~pd~~~~~~~~~~L~~lk~---~G~ir~iGvS~~ 200 (280)
.+|++|||.... .+ .++.|++ -..|+.+.+.+.
T Consensus 77 ~~d~vQLHg~e~---~~---~~~~l~~~~~~~iik~i~v~~~ 112 (210)
T PRK01222 77 PLDLLQLHGDET---PE---FCRQLKRRYGLPVIKALRVRSA 112 (210)
T ss_pred CCCEEEECCCCC---HH---HHHHHHhhcCCcEEEEEecCCH
Confidence 468999998542 23 3444444 356888888753
No 304
>PTZ00413 lipoate synthase; Provisional
Probab=29.23 E-value=5.1e+02 Score=24.68 Aligned_cols=167 Identities=16% Similarity=0.212 Sum_probs=88.8
Q ss_pred chhhHHHHHHHHHHHHHCCCCeEEcccccC----CCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHH
Q 023606 70 DDRKMKAAKAAFDTSLDNGITFFDTAEVYG----SRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQ 145 (280)
Q Consensus 70 ~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg----~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~ 145 (280)
...|+++..++-+++.+.|++|+=.+..-+ ++. =..+.+.++..... ..++-|..-++- ...+.+
T Consensus 175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~g-------a~~~a~~I~~Ir~~--~p~~~IevligD--f~g~~e 243 (398)
T PTZ00413 175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGG-------ASHVARCVELIKES--NPELLLEALVGD--FHGDLK 243 (398)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhh-------HHHHHHHHHHHHcc--CCCCeEEEcCCc--cccCHH
Confidence 346778888888888999998765444333 221 23455566655421 135666666642 111332
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEecCCC------------CCchhHHHHHHHHHHc---Cc-ccE---EEecCccHHHHH
Q 023606 146 SVLAALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ---GL-VKA---VGVSNYSEKRLR 206 (280)
Q Consensus 146 ~i~~~l~~sl~~Lg~d~iDl~~lH~pd~------------~~~~~~~~~L~~lk~~---G~-ir~---iGvS~~~~~~i~ 206 (280)
.++. |..-|+ |.| -|+.+. ..-++.|+.|+..++. |. ++. +|+.. +.+++.
T Consensus 244 ~l~~-----L~eAG~---dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGE-T~eEvi 313 (398)
T PTZ00413 244 SVEK-----LANSPL---SVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGE-TEEEVR 313 (398)
T ss_pred HHHH-----HHhcCC---CEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCC-CHHHHH
Confidence 2222 222343 322 254332 1245778888888874 33 222 44444 456666
Q ss_pred HHHHHHHhcCCCEEEE-ccc----CCc-cCC--Ccch-hhHHHHHHHcCCeEEEcccCcC
Q 023606 207 NAYEKLKKRGIPLASN-QVN----YSL-IYR--KPEE-NGVKAACDELGITLIAYCPIAQ 257 (280)
Q Consensus 207 ~~~~~~~~~~~~~~~~-q~~----~n~-~~~--~~~~-~~l~~~~~~~gi~i~a~spl~~ 257 (280)
+++..+...++.+..+ |.- -|+ ..+ .+++ ..+-+.+.+.|...++.+||-+
T Consensus 314 e~m~dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 314 QTLRDLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHHHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 6666666666554333 310 011 111 1111 2467778889999999999865
No 305
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=29.18 E-value=4.6e+02 Score=24.15 Aligned_cols=191 Identities=17% Similarity=0.086 Sum_probs=100.1
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhccc--CCCCCcE-----EEEecC
Q 023606 63 YWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQ--RDPEVEV-----TVATKF 135 (280)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~--~~~R~~~-----~I~tK~ 135 (280)
.|+....-. .++...++-+.++++|.+.+-|...+..-.+...+.+++..-+..+.... +..|+++ +|+--+
T Consensus 42 lWs~~~~~s-~Pe~V~~~H~efL~aGadIi~T~Tyqas~~~~~~~~~~~~~~el~~~s~~~a~~Are~~~~~~~~v~gsi 120 (317)
T KOG1579|consen 42 LWSAEALAS-NPEAVEQVHKEFLRAGADIISTNTYQASSDGFEEYVEEEELIELYEKSVELADLARERLGEETGYVAGSI 120 (317)
T ss_pred CCCchhhcc-ChHHHHHHHHHHHHccCcEEEEeeeeecchHHhhhhhhHHHHHHHHHHHHHHHHHHHHhccccceeeeec
Confidence 365544433 26888899999999999999998766542222122223333333322210 0012232 455455
Q ss_pred CCC--------------CCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHc--CcccEEEecC
Q 023606 136 AAL--------------PWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSN 199 (280)
Q Consensus 136 ~~~--------------~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~--G~ir~iGvS~ 199 (280)
|+. ....+.+.+.+-.++-|+.+.-.-+|++.+.-.. ...++-.+++-|.+. .+=-.|+++-
T Consensus 121 Gp~~A~l~~g~eytg~Y~~~~~~~el~~~~k~qle~~~~~gvD~L~fETip--~~~EA~a~l~~l~~~~~~~p~~is~t~ 198 (317)
T KOG1579|consen 121 GPYGATLADGSEYTGIYGDNVEFEELYDFFKQQLEVFLEAGVDLLAFETIP--NVAEAKAALELLQELGPSKPFWISFTI 198 (317)
T ss_pred ccccceecCCcccccccccccCHHHHHHHHHHHHHHHHhCCCCEEEEeecC--CHHHHHHHHHHHHhcCCCCcEEEEEEe
Confidence 431 0134556788888888888766669999997642 223333334434442 1223455543
Q ss_pred c------cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHH-HHcCCeEEEcccCcCCCC
Q 023606 200 Y------SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC-DELGITLIAYCPIAQGSK 260 (280)
Q Consensus 200 ~------~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~-~~~gi~i~a~spl~~G~L 260 (280)
. +.+.+++++.... ++.++..+=+++ ......+..+.++. +-.++.++.| |.++...
T Consensus 199 ~d~g~l~~G~t~e~~~~~~~-~~~~~~~IGvNC--~~~~~~~~~~~~L~~~~~~~~llvY-PNsGe~y 262 (317)
T KOG1579|consen 199 KDEGRLRSGETGEEAAQLLK-DGINLLGIGVNC--VSPNFVEPLLKELMAKLTKIPLLVY-PNSGEVY 262 (317)
T ss_pred cCCCcccCCCcHHHHHHHhc-cCCceEEEEecc--CCchhccHHHHHHhhccCCCeEEEe-cCCCCCC
Confidence 2 3466777766533 222344443333 33333332344444 5568888888 4444443
No 306
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=29.17 E-value=4.1e+02 Score=23.55 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=65.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEecCC-C---CCchhHHHHHHHHHH--cCcc-cEEEecCccHHHHHHHHHHHH
Q 023606 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAG-I---WGNEGFIDGLGDAVE--QGLV-KAVGVSNYSEKRLRNAYEKLK 213 (280)
Q Consensus 141 ~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd-~---~~~~~~~~~L~~lk~--~G~i-r~iGvS~~~~~~i~~~~~~~~ 213 (280)
..+.+.+++.++..++. | +|-+++-... + ...+|-.+.++..++ .|++ -..|++..+.+...+..+.++
T Consensus 18 ~id~~~~~~~i~~l~~~-G---v~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 18 SIDEDALKRLIDFLIEA-G---VDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQ 93 (289)
T ss_dssp SB-HHHHHHHHHHHHHT-T---SSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHc-C---CCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHh
Confidence 46677777777766644 4 5777775432 2 344555555554444 3555 778999999988888888888
Q ss_pred hcCCCEEEEcccCCccCCCcchhhHHHHH----HHcCCeEEEcc
Q 023606 214 KRGIPLASNQVNYSLIYRKPEENGVKAAC----DELGITLIAYC 253 (280)
Q Consensus 214 ~~~~~~~~~q~~~n~~~~~~~~~~l~~~~----~~~gi~i~a~s 253 (280)
..+..-..+..+|..-. ...++++++ ..-+++++.|.
T Consensus 94 ~~Gad~v~v~~P~~~~~---s~~~l~~y~~~ia~~~~~pi~iYn 134 (289)
T PF00701_consen 94 DAGADAVLVIPPYYFKP---SQEELIDYFRAIADATDLPIIIYN 134 (289)
T ss_dssp HTT-SEEEEEESTSSSC---CHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred hcCceEEEEeccccccc---hhhHHHHHHHHHHhhcCCCEEEEE
Confidence 88877555555543321 122455554 45689999885
No 307
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=29.04 E-value=4.3e+02 Score=23.82 Aligned_cols=65 Identities=22% Similarity=0.222 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHcCcccEEEecCcc------------HHHHHHHHHHHHhcCCCEEE-EcccCCccCCCcchhhHHHHHHH
Q 023606 178 GFIDGLGDAVEQGLVKAVGVSNYS------------EKRLRNAYEKLKKRGIPLAS-NQVNYSLIYRKPEENGVKAACDE 244 (280)
Q Consensus 178 ~~~~~L~~lk~~G~ir~iGvS~~~------------~~~i~~~~~~~~~~~~~~~~-~q~~~n~~~~~~~~~~l~~~~~~ 244 (280)
..++...+|.++|++-.||=+.+. .+.++.+++.+. ..+| +|++---.+..... .+-+++++
T Consensus 108 ~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~----dvdc~vqLHtes~~~~~~~-~i~~~ak~ 182 (285)
T COG1831 108 HALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAK----DVDCAVQLHTESLDEETYE-EIAEMAKE 182 (285)
T ss_pred HHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhh----cCCCcEEEecCCCChHHHH-HHHHHHHH
Confidence 345566778889988888766532 144455555543 2222 23332112221122 47777888
Q ss_pred cCC
Q 023606 245 LGI 247 (280)
Q Consensus 245 ~gi 247 (280)
.|+
T Consensus 183 ~G~ 185 (285)
T COG1831 183 AGI 185 (285)
T ss_pred hCC
Confidence 886
No 308
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=29.01 E-value=2.7e+02 Score=27.28 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=74.0
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAV 187 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk 187 (280)
-+-+|.+|+.. .+++|+--+.. .++....+..-+.+.+++-++.. .-+.+.--+. .+..-....+.+++
T Consensus 341 ~~dlG~~L~~~------~~l~VsINl~a--~Dl~s~rli~~~~~~l~~~~v~p-qQI~lElTER~f~D~~~~~~iI~r~R 411 (524)
T COG4943 341 FRDLGDLLRQH------RDLHVSINLSA--SDLASPRLIDRLNRKLAQYQVRP-QQIALELTERTFADPKKMTPIILRLR 411 (524)
T ss_pred HHHhHHHHHhC------cceEEEEeeee--hhhcCchHHHHHHHHHHhcCcCh-HHheeehhhhhhcCchhhhHHHHHHH
Confidence 34567777765 57888877754 45555567777777777766521 1111111111 34555677788888
Q ss_pred HcCcccEEEecCcc--HHHHHHHHHHHHhcCCCEEEEcccCCccCC--------CcchhhHHHHHHHcCCeEEEc-----
Q 023606 188 EQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYR--------KPEENGVKAACDELGITLIAY----- 252 (280)
Q Consensus 188 ~~G~ir~iGvS~~~--~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~--------~~~~~~l~~~~~~~gi~i~a~----- 252 (280)
+.|.--+| -+|. ...+.-+.+ .++++..+.=+..+. --.. .+++.+|+.|+.+++=
T Consensus 412 eaG~~IyI--DDFGTGYSnL~YLq~------L~VDaLKIDKsFvdtlg~~~a~~~I~~-hII~MAk~L~L~iVaEGVEte 482 (524)
T COG4943 412 EAGHEIYI--DDFGTGYSNLHYLQS------LPVDALKIDKSFVDTLGTDSASHLIAP-HIIEMAKSLGLKIVAEGVETE 482 (524)
T ss_pred hcCCeEEE--ccCcCcchhHHHHhh------CCccceeccHHHHHhhccCcccchhHH-HHHHHHHHcCCcEEeecccHH
Confidence 88863332 2221 122222211 244444333332221 0111 3777777777777763
Q ss_pred ----------ccCcCCCCCCCCC
Q 023606 253 ----------CPIAQGSKPRKRN 265 (280)
Q Consensus 253 ----------spl~~G~L~~~~~ 265 (280)
.++++|.|-+|..
T Consensus 483 eQ~~~LR~~Gv~~gQGW~fskaL 505 (524)
T COG4943 483 EQVDWLRKRGVHYGQGWLFSKAL 505 (524)
T ss_pred HHHHHHHHcCCccccccccCCCC
Confidence 3678888888764
No 309
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=28.95 E-value=1.4e+02 Score=29.03 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=41.7
Q ss_pred HHHhCCCcccEEEEe-cCCCCCchhHHHHHHHHHHcCcccEEEec-CccHHHHHHHHHHHHhcCCCEEEEcccCC
Q 023606 155 LFRLGLSSVELYQLH-WAGIWGNEGFIDGLGDAVEQGLVKAVGVS-NYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH-~pd~~~~~~~~~~L~~lk~~G~ir~iGvS-~~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (280)
...+|.|++=+++.. .|...+.+.+-+....+. ++.+||- +-+++.+.++++. ..++++|++-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~-----~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQ-----LSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHH-----cCCCEEEeCCC
Confidence 345788888876432 343344443333333332 8899987 5588888888776 57899999874
No 310
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=28.87 E-value=4.5e+02 Score=24.00 Aligned_cols=128 Identities=12% Similarity=0.066 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 023606 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (280)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (280)
+.+.++..++++.+.+.|+..+.- .| |+..-+..-.+++ +.+++.+ -.+.|+|-. ...+.+.+
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~---~G-GEPll~~~~~~ii-~~~~~~g-----~~~~l~TNG----~ll~~e~~--- 98 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHF---SG-GEPLARPDLVELV-AHARRLG-----LYTNLITSG----VGLTEARL--- 98 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEE---eC-ccccccccHHHHH-HHHHHcC-----CeEEEEeCC----ccCCHHHH---
Confidence 456788999999999999877663 23 4332111112222 2223222 245666665 22333322
Q ss_pred HHHHHHHhCCCcccEEEEecCCC------C----CchhHHHHHHHHHHcCcc--cEEEecCccHHHHHHHHHHHHhcCCC
Q 023606 151 LKDSLFRLGLSSVELYQLHWAGI------W----GNEGFIDGLGDAVEQGLV--KAVGVSNYSEKRLRNAYEKLKKRGIP 218 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH~pd~------~----~~~~~~~~L~~lk~~G~i--r~iGvS~~~~~~i~~~~~~~~~~~~~ 218 (280)
+.|...|++.|. +.|+.+++ . ..+.+++.++.|++.|.- -.+-++..+.+++.++++.+...+++
T Consensus 99 --~~L~~~g~~~v~-iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~ 175 (358)
T TIGR02109 99 --DALADAGLDHVQ-LSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGAD 175 (358)
T ss_pred --HHHHhCCCCEEE-EeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCC
Confidence 234445655443 33444432 1 134677888888888742 12344667889999999988877754
No 311
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=28.87 E-value=4e+02 Score=23.70 Aligned_cols=90 Identities=10% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCcccEEEEecCCC---CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcc
Q 023606 148 LAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQV 224 (280)
Q Consensus 148 ~~~l~~sl~~Lg~d~iDl~~lH~pd~---~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~ 224 (280)
.+...+.++.|--.-+|++-|--|-. .+-.-+.++-++..+.| .+.+.+-++++..++..-.|.+...
T Consensus 28 ~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g---------~~~~~~~~~~~~~r~~~~~p~vlm~ 98 (263)
T CHL00200 28 IVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQG---------INLNKILSILSEVNGEIKAPIVIFT 98 (263)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcC---------CCHHHHHHHHHHHhcCCCCCEEEEe
Q ss_pred cCCccCCCcchhhHHHHHHHcCC
Q 023606 225 NYSLIYRKPEENGVKAACDELGI 247 (280)
Q Consensus 225 ~~n~~~~~~~~~~l~~~~~~~gi 247 (280)
.||++.+.-.+. .++.|++.|+
T Consensus 99 Y~N~i~~~G~e~-F~~~~~~aGv 120 (263)
T CHL00200 99 YYNPVLHYGINK-FIKKISQAGV 120 (263)
T ss_pred cccHHHHhCHHH-HHHHHHHcCC
No 312
>PRK05926 hypothetical protein; Provisional
Probab=28.82 E-value=3.5e+02 Score=25.39 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCcccEEEe---------------cCccHHHHHHHHHHHHhcCCCEEEEcccCCccC
Q 023606 180 IDGLGDAVEQGLVKAVGV---------------SNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (280)
Q Consensus 180 ~~~L~~lk~~G~ir~iGv---------------S~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (280)
-+.|++|++.|.-++.|- ...+.++..+.++.+++.|++..+- +-|-+.+
T Consensus 169 ~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi~~~sg-mi~G~gE 233 (370)
T PRK05926 169 KEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGIPSNAT-MLCYHRE 233 (370)
T ss_pred HHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCcccCc-eEEeCCC
Confidence 455777777777666642 1123344555556666666554443 3343333
No 313
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=28.72 E-value=4.1e+02 Score=23.43 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEec-CCC---CCchhHHHHHHHHHHc--C-cccEEEecCccHHHHHHHHHHH
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHW-AGI---WGNEGFIDGLGDAVEQ--G-LVKAVGVSNYSEKRLRNAYEKL 212 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~-pd~---~~~~~~~~~L~~lk~~--G-~ir~iGvS~~~~~~i~~~~~~~ 212 (280)
...+.+.+++.++..++ .| +|-+++.. -.+ ...+|-.+.++...+. | ..-..|++..+.+...+..+.+
T Consensus 16 g~iD~~~~~~~i~~l~~-~G---v~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a 91 (284)
T cd00950 16 GSVDFDALERLIEFQIE-NG---TDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRA 91 (284)
T ss_pred CCcCHHHHHHHHHHHHH-cC---CCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHH
Confidence 35777778887776665 44 56665543 222 3455555555555544 3 3456899998888888888888
Q ss_pred HhcCCCEEEEcccCCccCCCcchhhHHHHH----HHcCCeEEEccc
Q 023606 213 KKRGIPLASNQVNYSLIYRKPEENGVKAAC----DELGITLIAYCP 254 (280)
Q Consensus 213 ~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~----~~~gi~i~a~sp 254 (280)
+..+.+-.++..++..- ....++++++ +..+++++.|..
T Consensus 92 ~~~G~d~v~~~~P~~~~---~~~~~l~~~~~~ia~~~~~pi~lYn~ 134 (284)
T cd00950 92 EKAGADAALVVTPYYNK---PSQEGLYAHFKAIAEATDLPVILYNV 134 (284)
T ss_pred HHcCCCEEEEcccccCC---CCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 88887766665554321 1122566654 345899998843
No 314
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=28.55 E-value=4e+02 Score=24.51 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhcCCCEEEE
Q 023606 203 KRLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~ 222 (280)
..++++.+.+++.++.+.+.
T Consensus 153 ~dl~~I~~la~~~g~~lIvD 172 (366)
T PRK08247 153 TDIAAIAKIAKKHGLLLIVD 172 (366)
T ss_pred HHHHHHHHHHHHcCCEEEEE
Confidence 45556666565555444443
No 315
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=28.50 E-value=2.8e+02 Score=28.01 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccE
Q 023606 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKA 194 (280)
Q Consensus 145 ~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~ 194 (280)
+.+.+.+++.+++||++ .|.+. .--+......+.+.+.+|.+.|.|-.
T Consensus 73 d~~~~~fk~~l~~lgI~-~D~f~-rTt~~~h~~~v~~~~~~L~~kG~IY~ 120 (648)
T PRK12267 73 DEISAGFKELWKKLDIS-YDKFI-RTTDERHKKVVQKIFEKLYEQGDIYK 120 (648)
T ss_pred HHHHHHHHHHHHHcCCC-CCCCe-eCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 56778889999999996 47432 21122234567888899999999853
No 316
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=28.49 E-value=3.8e+02 Score=27.70 Aligned_cols=152 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
|.+.+++++|-+.|++.+- .|. |+--..-=+... ++-|++.|. +.+-.-.-.+++.
T Consensus 43 EIaIRvFRa~tEL~~~tvA---iYs----------eqD~~sMHRqKA-----DEaY~iGk~------l~PV~AYL~idei 98 (1176)
T KOG0369|consen 43 EIAIRVFRAATELSMRTVA---IYS----------EQDRLSMHRQKA-----DEAYLIGKG------LPPVGAYLAIDEI 98 (1176)
T ss_pred cchhHHHHHHhhhcceEEE---EEe----------ccchhhhhhhcc-----ccceecccC------CCchhhhhhHHHH
Q ss_pred HHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcc
Q 023606 155 LFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPE 234 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~ 234 (280)
.+--....+|.+ .|..-=..|--+.-+...+.| |++||=|. +.++.+-....-..+.+.+. ++.-+-.+.+-
T Consensus 99 i~iak~~~vdav---HPGYGFLSErsdFA~av~~AG-i~fiGPsp---eVi~~mGDKv~AR~~Ai~ag-VpvVPGTpgPi 170 (1176)
T KOG0369|consen 99 ISIAKKHNVDAV---HPGYGFLSERSDFAQAVQDAG-IRFIGPSP---EVIDSMGDKVAARAIAIEAG-VPVVPGTPGPI 170 (1176)
T ss_pred HHHHHHcCCCee---cCCccccccchHHHHHHHhcC-ceEeCCCH---HHHHHhhhHHHHHHHHHHcC-CCccCCCCCCc
Q ss_pred hh--hHHHHHHHcCCeEEEcccCcCC
Q 023606 235 EN--GVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 235 ~~--~l~~~~~~~gi~i~a~spl~~G 258 (280)
+. +.++||+++|.+||--..+++|
T Consensus 171 tt~~EA~eF~k~yG~PvI~KAAyGGG 196 (1176)
T KOG0369|consen 171 TTVEEALEFVKEYGLPVIIKAAYGGG 196 (1176)
T ss_pred ccHHHHHHHHHhcCCcEEEeecccCC
No 317
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=28.47 E-value=2.5e+02 Score=21.55 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=41.2
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHHhC--CCcccEEEEecCCC--CCchhHHHHHHHHHHc
Q 023606 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (280)
Q Consensus 126 R~~~~I~tK-~~~~~~~~~~~~i~~~l~~sl~~Lg--~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~ 189 (280)
|--+.|+-| ++ .-..+..+++.++++++.+. +...|++++-.+.. .+..++.+.|.+|.+.
T Consensus 46 R~G~~VsKK~~g---~AV~RNriKR~lRe~~R~~~~~l~~~diVviar~~~~~~~~~~l~~~l~~ll~k 111 (114)
T PRK01732 46 RLGLTVAKKNVK---RAHERNRIKRLTRESFRLHQHELPAMDFVVIAKKGVADLDNRELFELLEKLWRR 111 (114)
T ss_pred EEEEEEEcccCc---chhHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 556677777 44 24556678888888877653 34579999988765 4566777777776543
No 318
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=28.44 E-value=4.4e+02 Score=24.46 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhCC
Q 023606 147 VLAALKDSLFRLGL 160 (280)
Q Consensus 147 i~~~l~~sl~~Lg~ 160 (280)
....++..+++.|.
T Consensus 98 ~~~~~~~~~~~~G~ 111 (378)
T TIGR01329 98 TDRLLTQVVPRSGV 111 (378)
T ss_pred HHHHHHHHHHHcCc
Confidence 33444555566664
No 319
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.26 E-value=1.4e+02 Score=22.83 Aligned_cols=77 Identities=25% Similarity=0.177 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCC---------------
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA--------------- 137 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~--------------- 137 (280)
|.......---++++|.-|+-|-..|.-|+ |..+---|-+. .+++++.+|+.-
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG~-------evfl~l~lld~-----pekl~vagkVaWitP~gt~sr~~GiGv 85 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIGE-------EVFLLLELLDF-----PEKLPVAGKVAWITPVGTQSRPAGIGV 85 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccch-------hhhhhhhhcCc-----hhhccccceEEEEccCCCCCCCCceee
Confidence 344555556667899999999999997652 44444333333 378899988741
Q ss_pred -CCCCCCHHHHHHHHHHHHHH-hCCC
Q 023606 138 -LPWRLGRQSVLAALKDSLFR-LGLS 161 (280)
Q Consensus 138 -~~~~~~~~~i~~~l~~sl~~-Lg~d 161 (280)
+..+-.-..+++++|..|-. +|-|
T Consensus 86 ~f~d~e~g~~vr~~IE~~Lg~~igss 111 (117)
T COG3215 86 QFTDGENGLKVRNQIETLLGGTIGSS 111 (117)
T ss_pred eccCCCchhhHHHHHHHHHHhhccCC
Confidence 11223344688888888743 3433
No 320
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=28.17 E-value=3.7e+02 Score=22.79 Aligned_cols=52 Identities=19% Similarity=0.132 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHh---CCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCc
Q 023606 145 QSVLAALKDSLFRL---GLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY 200 (280)
Q Consensus 145 ~~i~~~l~~sl~~L---g~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~ 200 (280)
..+.+.+++.++++ |. .+++++.... .+.+...+.++.+..+ ++..|=+...
T Consensus 15 ~~~~~~i~~~~~~~~~~g~-~~~l~i~~~~--~~~~~~~~~~~~~~~~-~vdgiIi~~~ 69 (272)
T cd06300 15 AQMLDEFKAQAKELKKAGL-ISEFIVTSAD--GDVAQQIADIRNLIAQ-GVDAIIINPA 69 (272)
T ss_pred HHHHHHHHHHHHhhhccCC-eeEEEEecCC--CCHHHHHHHHHHHHHc-CCCEEEEeCC
Confidence 34555555555555 42 1344443322 1223344555555554 4444444333
No 321
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=28.11 E-value=4.9e+02 Score=24.11 Aligned_cols=71 Identities=13% Similarity=-0.048 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~ 211 (280)
.-++.++-.+-.+-+.+.+++++|-|=.+-.+.. .+..+.+++.++|.++|..-.+ +|+-++...+++.+.
T Consensus 145 g~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~-yc~~d~~~a~~l~~~ 217 (326)
T PRK11840 145 GCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMV-YCSDDPIAAKRLEDA 217 (326)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEE-EeCCCHHHHHHHHhc
Confidence 3577777777778888888999888877765443 4578999999999999976533 455577777777654
No 322
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=27.93 E-value=4.3e+02 Score=23.41 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=54.2
Q ss_pred HHHHHHHHC--CCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEec--CCCCCCCCCHHHHHHHHHH-
Q 023606 79 AAFDTSLDN--GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATK--FAALPWRLGRQSVLAALKD- 153 (280)
Q Consensus 79 ~~l~~A~~~--Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK--~~~~~~~~~~~~i~~~l~~- 153 (280)
+++++|++. |...|.....-. .+. + .+-..+++++ -.+++..- -+ ...+.+...+.+++
T Consensus 80 ~v~eaaL~~~~G~~iINsIs~~~-~~~------~-~~~~l~~~~g-----~~vv~m~~~~~g---~P~t~~~~~~~l~~~ 143 (261)
T PRK07535 80 AAIEAGLKVAKGPPLINSVSAEG-EKL------E-VVLPLVKKYN-----APVVALTMDDTG---IPKDAEDRLAVAKEL 143 (261)
T ss_pred HHHHHHHHhCCCCCEEEeCCCCC-ccC------H-HHHHHHHHhC-----CCEEEEecCCCC---CCCCHHHHHHHHHHH
Confidence 356666666 777766543221 011 3 3445666664 34554432 11 12233333333333
Q ss_pred --HHHHhCCCcccEEEEecCCC-----CCchhHHHHHHHHHHc--CcccEEEecCcc
Q 023606 154 --SLFRLGLSSVELYQLHWAGI-----WGNEGFIDGLGDAVEQ--GLVKAVGVSNYS 201 (280)
Q Consensus 154 --sl~~Lg~d~iDl~~lH~pd~-----~~~~~~~~~L~~lk~~--G~ir~iGvS~~~ 201 (280)
.+.+.|++.=|+++==...+ ....++++.++.+++. |.=--+|+||.+
T Consensus 144 v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 144 VEKADEYGIPPEDIYIDPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHcCCCHhHEEEeCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 33456775333332111111 1245668888888887 888889999864
No 323
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=27.86 E-value=2.9e+02 Score=23.01 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEecCCC---CCchhHHHHHHHHHHcCcccEEEecCcc--HHHHHHHHHHHHhcCCC
Q 023606 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIP 218 (280)
Q Consensus 144 ~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~---~~~~~~~~~L~~lk~~G~ir~iGvS~~~--~~~i~~~~~~~~~~~~~ 218 (280)
.+.....+...++..+... +.+.+--++. .....+.+.+..|++.|. .+++.++. ...++.+.+ ++
T Consensus 97 ~~~~~~~~~~~l~~~~~~~-~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~~------~~ 167 (240)
T cd01948 97 DPDFLDRLLELLAETGLPP-RRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLKR------LP 167 (240)
T ss_pred CcHHHHHHHHHHHHcCCCH-HHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHHh------CC
Confidence 3445677778888888764 2233322222 334458899999999995 46666653 344444433 46
Q ss_pred EEEEcccCCccCCCcc-------hhhHHHHHHHcCCeEEEcc
Q 023606 219 LASNQVNYSLIYRKPE-------ENGVKAACDELGITLIAYC 253 (280)
Q Consensus 219 ~~~~q~~~n~~~~~~~-------~~~l~~~~~~~gi~i~a~s 253 (280)
|+++-+..+.+..-.. -..++..|+..|+.+++-.
T Consensus 168 ~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~g 209 (240)
T cd01948 168 VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEG 209 (240)
T ss_pred CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEe
Confidence 7777766655433111 1257888999999988754
No 324
>PF04135 Nop10p: Nucleolar RNA-binding protein, Nop10p family; InterPro: IPR007264 H/ACA ribonucleoprotein particles (RNPs) are a family of RNA pseudouridine synthases that specify modification sites through guide RNAs. More than 100 mammalian H/ACA RNAs form an equal number of ribonucleoproteins (RNPs) by associating with the same four core proteins: Cbf5, Gar1, Nhp2 and Nop10. The function of these H/ACA RNPs is essential for biogenesis of the ribosome, splicing of precursor mRNAs (pre-mRNAs), maintenance of telomeres and probably for additional cellular processes []. Recent crystal structures of archaeal H/ACA protein complexes show how the same four proteins accommodate >100 distinct but related H/ACA RNAs []. The complex contains a stable core composed of Cbf5 and Nop10, to which Gar1 and Nhp2 subsequently bind, the complex interacts with snoRNAs []. In eukaryotes Nop10 is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10 is probably necessary for the stability of these RNPs [].; PDB: 2RFK_B 3LWR_B 2HVY_C 3HAX_C 3MQK_B 3LWO_B 3LWV_B 3HAY_C 3HJY_B 2EY4_E ....
Probab=27.86 E-value=32 Score=22.88 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=12.4
Q ss_pred CCCCCCCCccCCCCCCC
Q 023606 262 RKRNWWFHCLKLSDENQ 278 (280)
Q Consensus 262 ~~~~~~~~~~~~~~~~~ 278 (280)
|......||++||++|-
T Consensus 24 G~~T~~ahPaRFSPdDk 40 (53)
T PF04135_consen 24 GGPTESAHPARFSPDDK 40 (53)
T ss_dssp SSBSEESSSSSS-TTTT
T ss_pred CCCCcCCcCCCCCCCCc
Confidence 44566789999999974
No 325
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=27.82 E-value=3e+02 Score=26.62 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=49.2
Q ss_pred HHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcC--CC-EEEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 023606 181 DGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG--IP-LASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 181 ~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~--~~-~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~sp 254 (280)
+-...+-+.|-...+|....+++++++.++.++... .+ |-+|-+ .+.-+... +.++++.|.++++.++..+-
T Consensus 34 eLVaAVs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~-e~~~v~l~l~~~V~~veasa 108 (444)
T TIGR02814 34 ELVIAMGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPAL-EWGLVDLLLRHGVRIVEASA 108 (444)
T ss_pred HHHHHHHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCccc-HHHHHHHHHHcCCCEEEecc
Confidence 334455688999999999999999999988877532 24 655543 22212211 23589999999999876653
No 326
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=27.63 E-value=5.9e+02 Score=24.90 Aligned_cols=118 Identities=9% Similarity=0.043 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcCcccEEEecCc----cHHHHHHHHHHHHhc
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQGLVKAVGVSNY----SEKRLRNAYEKLKKR 215 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G~ir~iGvS~~----~~~~i~~~~~~~~~~ 215 (280)
.+++.+.+.+.++.+...- +-.-+.+...|. .+.+.+++.++.+.+.| +..|.+++- .|+++.++++...+.
T Consensus 110 ~s~~e~l~~~~~~v~~a~~-~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G-a~~i~l~DTvG~~~P~~~~~~i~~l~~~ 187 (494)
T TIGR00973 110 MTRDEVLERAVGMVKYAKN-FTDDVEFSCEDAGRTEIPFLARIVEAAINAG-ATTINIPDTVGYALPAEYGNLIKGLREN 187 (494)
T ss_pred CCHHHHHHHHHHHHHHHHH-cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 3445555544444443321 111233443333 44566666677777766 566776653 466666666654332
Q ss_pred CCC-EEEEcccCCccCCCcchhh--HHHHHHHcCCeEEEcccCcCCCCCCCC
Q 023606 216 GIP-LASNQVNYSLIYRKPEENG--VKAACDELGITLIAYCPIAQGSKPRKR 264 (280)
Q Consensus 216 ~~~-~~~~q~~~n~~~~~~~~~~--l~~~~~~~gi~i~a~spl~~G~L~~~~ 264 (280)
++ +.-+.+.+|.=+ ..... -.-.+-+.|...+--+..|.|--+|+-
T Consensus 188 -~~~~~~v~l~~H~HN--D~GlAvANalaAv~aGa~~vd~tv~GlGERaGNa 236 (494)
T TIGR00973 188 -VPNIDKAILSVHCHN--DLGLAVANSLAAVQNGARQVECTINGIGERAGNA 236 (494)
T ss_pred -hccccCceEEEEeCC--CCChHHHHHHHHHHhCCCEEEEEeecccccccCc
Confidence 11 111112222211 11101 112334578888877777888666665
No 327
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=27.61 E-value=4.3e+02 Score=23.29 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHcC-cccEEEecCccH---HHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEE-E
Q 023606 177 EGFIDGLGDAVEQG-LVKAVGVSNYSE---KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLI-A 251 (280)
Q Consensus 177 ~~~~~~L~~lk~~G-~ir~iGvS~~~~---~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~-a 251 (280)
+.+++.+++++++. .+.-+-++-+++ .=++++++.+.+.++.-.+ ++.=+. .+..++++.|+++|+..+ .
T Consensus 72 ~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgvi--ipDlp~---ee~~~~~~~~~~~gl~~i~l 146 (256)
T TIGR00262 72 EKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVL--VADLPL---EESGDLVEAAKKHGVKPIFL 146 (256)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEE--ECCCCh---HHHHHHHHHHHHCCCcEEEE
Confidence 45666777777652 333344444443 1112333333333332211 221111 122368899999998744 4
Q ss_pred ccc
Q 023606 252 YCP 254 (280)
Q Consensus 252 ~sp 254 (280)
.+|
T Consensus 147 v~P 149 (256)
T TIGR00262 147 VAP 149 (256)
T ss_pred ECC
Confidence 444
No 328
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=27.58 E-value=2.3e+02 Score=26.35 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=8.5
Q ss_pred hHHHHHHHcC--CeEEE
Q 023606 237 GVKAACDELG--ITLIA 251 (280)
Q Consensus 237 ~l~~~~~~~g--i~i~a 251 (280)
+++.++++.+ +++.+
T Consensus 102 g~i~l~~e~~p~l~ih~ 118 (347)
T COG0826 102 GLIMLARERGPDLPIHV 118 (347)
T ss_pred HHHHHHHHhCCCCcEEE
Confidence 3566666665 55543
No 329
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=27.53 E-value=4e+02 Score=22.94 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=26.3
Q ss_pred CEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 023606 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
.+.+.==+||++|..... ++.+..++.|+.++..
T Consensus 185 ~Ivl~GrpY~~~D~~in~-~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 185 AIVLLGRPYNIYDPFINM-GIPDKLRSLGVPVITE 218 (221)
T ss_pred eEEEEcCCCcCCCcccCC-chHHHHHHCCCeeeCc
Confidence 455555688888876544 6999999999999864
No 330
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=27.36 E-value=4.6e+02 Score=23.55 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTA 95 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA 95 (280)
.+.++..++++.-.+.|+..|+..
T Consensus 23 ~s~e~k~~ia~~L~~~Gv~~IEvg 46 (287)
T PRK05692 23 IPTADKIALIDRLSAAGLSYIEVA 46 (287)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeC
Confidence 445778888888889999999987
No 331
>PRK00396 rnpA ribonuclease P; Reviewed
Probab=27.34 E-value=2.5e+02 Score=22.16 Aligned_cols=61 Identities=11% Similarity=0.217 Sum_probs=40.8
Q ss_pred CCcEEEEec-CCCCCCCCCHHHHHHHHHHHHHHhC--CCcccEEEEecCCC--CCchhHHHHHHHHHHc
Q 023606 126 EVEVTVATK-FAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (280)
Q Consensus 126 R~~~~I~tK-~~~~~~~~~~~~i~~~l~~sl~~Lg--~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~ 189 (280)
|=-+.|+-| ++ .-..+..+++.++++++... +.-.|++++..+.. .+..++.+.|.+|.+.
T Consensus 47 RiG~~VsKK~~g---~AV~RNRiKR~lRE~fR~~~~~l~g~DiVviaR~~~~~~~~~~l~~~l~~ll~k 112 (130)
T PRK00396 47 RLGLVIGKKSVK---LAVDRNRLKRLIRESFRLNQHSLAGWDIVVVARKGLGELENPELHQQFGKLWKR 112 (130)
T ss_pred cEEEEEecccCc---cHhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 555677777 54 24566778888888887643 34689999998765 4455666666666443
No 332
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=27.26 E-value=2.6e+02 Score=28.39 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcc
Q 023606 145 QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV 192 (280)
Q Consensus 145 ~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~i 192 (280)
+...+.+++.+++||++ .|.+.-. .++.-...+.+.+.+|.++|.|
T Consensus 71 ~~~~~~~~~~~~~l~i~-~d~f~rt-t~~~h~~~v~~~~~~L~~~G~i 116 (673)
T PRK00133 71 ARYHAEHKRDFAGFGIS-FDNYGST-HSEENRELAQEIYLKLKENGYI 116 (673)
T ss_pred HHHHHHHHHHHHHhCCC-CCCCccC-CcHHHHHHHHHHHHHHHHCCCE
Confidence 45677888999999997 4743211 1112356788889999999987
No 333
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=27.23 E-value=3.7e+02 Score=22.46 Aligned_cols=70 Identities=16% Similarity=0.095 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
++..+.+..+-+.|+..+=.++ .+ |+.++.+.+..+.. =++=+-|- +.+.+++.
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSN--n~---------e~RV~~~~~~l~v~----fi~~A~KP-----------~~~~fr~A 102 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSN--NK---------ESRVARAAEKLGVP----FIYRAKKP-----------FGRAFRRA 102 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeC--CC---------HHHHHhhhhhcCCc----eeecccCc-----------cHHHHHHH
Confidence 5677889999999999887664 22 99999999887642 12222221 56889999
Q ss_pred HHHhCCCcccEEEEec
Q 023606 155 LFRLGLSSVELYQLHW 170 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH~ 170 (280)
|+.++.+.-+++++-+
T Consensus 103 l~~m~l~~~~vvmVGD 118 (175)
T COG2179 103 LKEMNLPPEEVVMVGD 118 (175)
T ss_pred HHHcCCChhHEEEEcc
Confidence 9999998888888864
No 334
>PLN02449 ferrochelatase
Probab=27.19 E-value=4.5e+02 Score=25.80 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHhCCCc----ccEEEEec--CCCCCchhHHHHHHHHHHcCc----ccEEEecCccHHHHHH----HH
Q 023606 144 RQSVLAALKDSLFRLGLSS----VELYQLHW--AGIWGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRN----AY 209 (280)
Q Consensus 144 ~~~i~~~l~~sl~~Lg~d~----iDl~~lH~--pd~~~~~~~~~~L~~lk~~G~----ir~iGvS~~~~~~i~~----~~ 209 (280)
.+.+++..+...++|+.+. ..+.+--+ |..+-...+-+.|++|.++|. |-.|||..-..|.+.+ +.
T Consensus 299 ~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~r 378 (485)
T PLN02449 299 KAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYR 378 (485)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHH
Confidence 5678888888889998742 23332222 222445677789999999984 3445655544555443 33
Q ss_pred HHHHhcCC
Q 023606 210 EKLKKRGI 217 (280)
Q Consensus 210 ~~~~~~~~ 217 (280)
+.+.+.|+
T Consensus 379 e~a~e~G~ 386 (485)
T PLN02449 379 ELALESGI 386 (485)
T ss_pred HHHHHcCC
Confidence 34555554
No 335
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=27.17 E-value=5e+02 Score=24.14 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCC----CCchhHHHHHHHHHHcCc-ccEEEecCc------cHHHHHHHHH
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGL-VKAVGVSNY------SEKRLRNAYE 210 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~----~~~~~~~~~L~~lk~~G~-ir~iGvS~~------~~~~i~~~~~ 210 (280)
..++.|+.+++...+. |.=-.+++..-+. .....++.-+++|+++|. |-.||+-+| +.+.+..+..
T Consensus 168 ~gpd~I~~aF~~Area---dP~AkL~~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~~~~~~~~~~a~~ 244 (345)
T COG3693 168 TGPDYIKLAFHIAREA---DPDAKLVINDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGDGPSIEKMRAALL 244 (345)
T ss_pred CccHHHHHHHHHHHhh---CCCceEEeecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCCCCCHHHHHHHHH
Confidence 4567777777777772 3223344443322 124567889999999999 999998764 3566666666
Q ss_pred HHHhcCCCEEEEcccCCccC
Q 023606 211 KLKKRGIPLASNQVNYSLIY 230 (280)
Q Consensus 211 ~~~~~~~~~~~~q~~~n~~~ 230 (280)
...+.++++.+-.+..+...
T Consensus 245 ~~~k~Gl~i~VTELD~~~~~ 264 (345)
T COG3693 245 KFSKLGLPIYVTELDMSDYT 264 (345)
T ss_pred HHhhcCCCceEEEeeeeccC
Confidence 65566788887766666543
No 336
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=27.10 E-value=4.6e+02 Score=23.46 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHH
Q 023606 141 RLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (280)
Q Consensus 141 ~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~ 210 (280)
..+.+.+..-+++..+. ++.+.+++-|.|......--.+.+.+|.+...|..|=-|+-+..++.++.+
T Consensus 109 ~~~~~~i~~yf~~v~~~--~~~lpv~lYn~P~~tg~~l~~~~i~~L~~~pnv~giK~s~~d~~~~~~~~~ 176 (290)
T TIGR00683 109 KFSFPEIKHYYDTIIAE--TGGLNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKK 176 (290)
T ss_pred CCCHHHHHHHHHHHHhh--CCCCCEEEEeCccccccCcCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHH
Confidence 34556676666666654 335788888888764444345566666666655555555556666666544
No 337
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=27.09 E-value=4.8e+02 Score=23.73 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHH----
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV---- 147 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i---- 147 (280)
.+.++..+.++.+.+.|++.|--.....+... ...+-+.++...... -++- + ..+++..+
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~------~~~~~~li~~Ik~~~--~~i~----~----~~~s~~ei~~~~ 135 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILLQGGVNPDLG------LDYYEDLFRAIKARF--PHIH----I----HSFSPVEIVYIA 135 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEecCCCCCCC------HHHHHHHHHHHHHHC--CCcC----C----CCCCHHHHHHHh
Confidence 56788888999999999987765322111111 223333333322100 0111 1 11222221
Q ss_pred ------HHHHHHHHHHhCCCcccEE--E-E-----ec--CCCCCchhHHHHHHHHHHcCcccE----EEecCccHHHHHH
Q 023606 148 ------LAALKDSLFRLGLSSVELY--Q-L-----HW--AGIWGNEGFIDGLGDAVEQGLVKA----VGVSNYSEKRLRN 207 (280)
Q Consensus 148 ------~~~l~~sl~~Lg~d~iDl~--~-l-----H~--pd~~~~~~~~~~L~~lk~~G~ir~----iGvS~~~~~~i~~ 207 (280)
.+..=+.|++.|+++++.. . + +. |...+.++.++.++.+++.|.--. +|. ..+.+.+.+
T Consensus 136 ~~~g~~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGl-gEt~ed~~~ 214 (340)
T TIGR03699 136 KKEGLSLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGH-VETLEDRIE 214 (340)
T ss_pred ccCCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeC-CCCHHHHHH
Confidence 1334445666788877621 1 1 00 111245678999999999986322 343 456666666
Q ss_pred HHHHHHhcC
Q 023606 208 AYEKLKKRG 216 (280)
Q Consensus 208 ~~~~~~~~~ 216 (280)
.+..++..+
T Consensus 215 ~l~~l~~l~ 223 (340)
T TIGR03699 215 HLERIRELQ 223 (340)
T ss_pred HHHHHHHhc
Confidence 666655443
No 338
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=27.09 E-value=4.1e+02 Score=24.06 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeE
Q 023606 176 NEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITL 249 (280)
Q Consensus 176 ~~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i 249 (280)
+.++++.| .++..+|-+|=+-.| +.+.+..+++.+.+.++++-+ ++++.... -.++.|.+.+|..
T Consensus 135 IKE~vR~~--I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYi------LLD~~~~~-~Fl~Mc~~~~v~~ 200 (284)
T PF07894_consen 135 IKEVVRRM--IQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYI------LLDEQNLP-HFLEMCEKLGVNL 200 (284)
T ss_pred HHHHHHHH--HHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEE------EechhcCh-HHHHHHHHCCCCh
Confidence 34444443 356678888888888 689999999998777775433 34443333 2677887776654
No 339
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=27.06 E-value=4.4e+02 Score=23.28 Aligned_cols=52 Identities=23% Similarity=0.183 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCC
Q 023606 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G 258 (280)
-++.+|.++.+.++..+++..+.+..++. .-+-..+++.|+.++...||+.+
T Consensus 204 ps~~~l~~l~~~ik~~~v~~if~e~~~~~-------~~~~~la~~~g~~v~~ld~l~~~ 255 (282)
T cd01017 204 PSPKQLAELVEFVKKSDVKYIFFEENASS-------KIAETLAKETGAKLLVLNPLETL 255 (282)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCh-------HHHHHHHHHcCCcEEEecccccc
Confidence 46899999999998888888887776643 12344667889999888888765
No 340
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=27.05 E-value=68 Score=24.51 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCC
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGS 100 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~ 100 (280)
+.+.+.++...+++.|++.||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 3467888888999999999999999854
No 341
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=27.01 E-value=3.6e+02 Score=22.26 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccEE
Q 023606 144 RQSVLAALKDSLFRLGLSSVELY 166 (280)
Q Consensus 144 ~~~i~~~l~~sl~~Lg~d~iDl~ 166 (280)
++.+.+.++. +.+.|.|+|.+-
T Consensus 10 ~~~~~~~~~~-~~~~g~d~i~~~ 31 (210)
T TIGR01163 10 FARLGEEVKA-VEEAGADWIHVD 31 (210)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEc
Confidence 3344444433 234455555554
No 342
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.86 E-value=1.5e+02 Score=26.91 Aligned_cols=53 Identities=15% Similarity=0.311 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcccCCc------------c--C--CCcchhhHHHHHHHcCCeEEEcc
Q 023606 201 SEKRLRNAYEKLKKRGIPLASNQVNYSL------------I--Y--RKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~------------~--~--~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
+.++++++++..++.+++++++.+...- + + +-++-.++++..+++|+.++.+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v 90 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVIT 90 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEE
Confidence 5677778877778888888887665321 1 1 11122379999999999998873
No 343
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=26.85 E-value=2.6e+02 Score=26.87 Aligned_cols=61 Identities=13% Similarity=0.213 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEE-ecCCC-----------CC-chhH----HHHHHHHHHcCcccEEEecCccH
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQL-HWAGI-----------WG-NEGF----IDGLGDAVEQGLVKAVGVSNYSE 202 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~l-H~pd~-----------~~-~~~~----~~~L~~lk~~G~ir~iGvS~~~~ 202 (280)
...+.+.+.+.++..++ |+.++|.++.+ +.|.. .+ .++. -.+.+.|.+.|. ..+++++|..
T Consensus 213 Pgqt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 213 PKQTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 45788888888886655 89999999977 22210 11 1222 223455666775 6799999853
No 344
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=26.65 E-value=2e+02 Score=26.15 Aligned_cols=47 Identities=17% Similarity=0.030 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhCCCcccEEEEec-CCCCCchhHHHHHHHHHHcCcc
Q 023606 145 QSVLAALKDSLFRLGLSSVELYQLHW-AGIWGNEGFIDGLGDAVEQGLV 192 (280)
Q Consensus 145 ~~i~~~l~~sl~~Lg~d~iDl~~lH~-pd~~~~~~~~~~L~~lk~~G~i 192 (280)
+...+.+++.+++||++ +|....-. .++.-.+-+.+.+.+|.++|.|
T Consensus 69 ~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~i 116 (314)
T cd00812 69 EYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLA 116 (314)
T ss_pred HHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 45677889999999984 57321111 1111134455677899999987
No 345
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=26.64 E-value=2.5e+02 Score=22.78 Aligned_cols=81 Identities=23% Similarity=0.216 Sum_probs=58.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHH--cCcccEEEecCccHHHHHHHHHHHHhcCC
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE--QGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~--~G~ir~iGvS~~~~~~i~~~~~~~~~~~~ 217 (280)
...+.+.+.+.+++-.+.+|+ .++.+|-.. ..++++.+++..+ +|.|-.=|--+|..-.+..+++. +
T Consensus 24 G~~tl~~i~~~~~~~a~~~g~-~~~~~QSN~-----EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~-----~ 92 (146)
T PRK13015 24 GHETLADVEALCRAAAEALGL-EVEFRQSNH-----EGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAA-----L 92 (146)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-EEEEEeeCc-----HHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHc-----C
Confidence 346788899999999999997 466666542 3678888888865 46777777777877777777766 5
Q ss_pred CEEEEcccCCccCC
Q 023606 218 PLASNQVNYSLIYR 231 (280)
Q Consensus 218 ~~~~~q~~~n~~~~ 231 (280)
...++.+..+-.+.
T Consensus 93 ~~P~VEVHiSNi~a 106 (146)
T PRK13015 93 ELPVIEVHISNVHA 106 (146)
T ss_pred CCCEEEEEcCCccc
Confidence 66677777766543
No 346
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=26.55 E-value=3.9e+02 Score=22.68 Aligned_cols=88 Identities=10% Similarity=0.157 Sum_probs=53.4
Q ss_pred hCCCcccEEEEe-cCCC--CCch----hHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccC
Q 023606 158 LGLSSVELYQLH-WAGI--WGNE----GFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIY 230 (280)
Q Consensus 158 Lg~d~iDl~~lH-~pd~--~~~~----~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~ 230 (280)
-|.++||+=--- +|.. .+.+ .+...++.+++..-=--|.+-+++++.++.+++. +.++..+...+..
T Consensus 31 ~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~----g~~~ind~~~~~~-- 104 (210)
T PF00809_consen 31 AGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKA----GADIINDISGFED-- 104 (210)
T ss_dssp TT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHH----TSSEEEETTTTSS--
T ss_pred hcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHc----CcceEEecccccc--
Confidence 477888854221 2322 1222 2334444444311124677888999999999875 4566665555433
Q ss_pred CCcchhhHHHHHHHcCCeEEEcccC
Q 023606 231 RKPEENGVKAACDELGITLIAYCPI 255 (280)
Q Consensus 231 ~~~~~~~l~~~~~~~gi~i~a~spl 255 (280)
.. ++++.+++++.+++++..-
T Consensus 105 ---~~-~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 105 ---DP-EMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp ---ST-THHHHHHHHTSEEEEESES
T ss_pred ---cc-hhhhhhhcCCCEEEEEecc
Confidence 11 5999999999999998665
No 347
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=26.47 E-value=4.3e+02 Score=25.54 Aligned_cols=103 Identities=17% Similarity=0.146 Sum_probs=55.1
Q ss_pred hHHHHHHHHhcccCCCC-CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC------chhHHHH
Q 023606 110 ETLLGRFIKERKQRDPE-VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG------NEGFIDG 182 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R-~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~------~~~~~~~ 182 (280)
|+.|-++|++.....+. +-++|.|=+.. ..-.+.+..-+++.-++++ ++++.+|.|.... .....++
T Consensus 116 e~kL~~aI~e~~~~~~P~~~I~V~tTC~~---~lIGDDi~av~~~~~~~~~---~pVi~v~t~gf~G~s~~~G~~~a~~a 189 (466)
T TIGR01282 116 DKKLKKAIDEIEELFPLNKGISIQSECPV---GLIGDDIEAVAKKASKELG---KPVVPVRCEGFRGVSQSLGHHIANDA 189 (466)
T ss_pred HHHHHHHHHHHHHhCCcccEEEEeCCChH---HHhccCHHHHHHHHhhhcC---CcEEEEeCCCcCCchhhHHHHHHHHH
Confidence 88888888876654323 55777776632 2222333333444333443 6889999988632 1122333
Q ss_pred HH-HHHH----------cCcccEEEecCc--cHHHHHHHHHHHHhcCCCEEE
Q 023606 183 LG-DAVE----------QGLVKAVGVSNY--SEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 183 L~-~lk~----------~G~ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~ 221 (280)
+. .+.. .+.|--||-.++ +.+.|++++ +..++++..
T Consensus 190 i~~~l~~~~~~~~~~~~~~~VNiiG~~~~~gd~~eik~lL---~~~Gi~v~~ 238 (466)
T TIGR01282 190 VRDWVLGKGDKEKFEPTPYDVAIIGDYNIGGDAWESRILL---EEIGLRVVA 238 (466)
T ss_pred HHHHhhccccccccCCCCCeEEEEecCCCcccHHHHHHHH---HHcCCeEEE
Confidence 22 2221 356888885554 345555554 445665543
No 348
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=26.46 E-value=51 Score=26.10 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.1
Q ss_pred hHHHHHHHcCCeEEEcccCc
Q 023606 237 GVKAACDELGITLIAYCPIA 256 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~spl~ 256 (280)
++++.|++.||.+++|-.+.
T Consensus 48 e~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 48 EQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHCCCEEEEEEeee
Confidence 69999999999999997765
No 349
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=26.40 E-value=4.8e+02 Score=23.48 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCcccEEEec---------------CccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHH
Q 023606 180 IDGLGDAVEQGLVKAVGVS---------------NYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDE 244 (280)
Q Consensus 180 ~~~L~~lk~~G~ir~iGvS---------------~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~ 244 (280)
-+.|++|++.|.-+..|++ ..+.++..++++.+.+.++++.+-. -+-+-+...+..+.+..+++
T Consensus 107 ~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~-iiG~~Et~ed~~~~l~~lr~ 185 (309)
T TIGR00423 107 EEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATM-MFGHVENPEHRVEHLLRIRK 185 (309)
T ss_pred HHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeE-EecCCCCHHHHHHHHHHHHh
Confidence 5778999999976654321 1245666677777777776554321 22222222222245666666
Q ss_pred cCC
Q 023606 245 LGI 247 (280)
Q Consensus 245 ~gi 247 (280)
.+.
T Consensus 186 l~~ 188 (309)
T TIGR00423 186 IQE 188 (309)
T ss_pred hch
Confidence 554
No 350
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=26.32 E-value=1.2e+02 Score=23.28 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCcccEEEEecCCC--CCchhHHHHHHHHHHcC
Q 023606 150 ALKDSLFRLGLSSVELYQLHWAGI--WGNEGFIDGLGDAVEQG 190 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~G 190 (280)
.+++.|+.+.....|.+++..++. -...++...++.|.+.|
T Consensus 53 ~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (137)
T cd00338 53 GLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG 95 (137)
T ss_pred HHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC
Confidence 344444444334555555555554 12334444444444443
No 351
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=26.20 E-value=75 Score=21.36 Aligned_cols=44 Identities=14% Similarity=0.157 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 204 RLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 204 ~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
.++++++.+.+.+++...+ ...+-+.. ...+.+.+++.||.++.
T Consensus 16 ~~~~~~~~a~~~g~~~v~i-TDh~~~~~---~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI-TDHGNLFG---AVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE-eeCCcccC---HHHHHHHHHHcCCeEEE
Confidence 3445555566666654443 22221111 11467778888887754
No 352
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=26.13 E-value=4.3e+02 Score=23.87 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCcccEEEEecCCC-------CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCC-E
Q 023606 148 LAALKDSLFRLGLSSVELYQLHWAGI-------WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP-L 219 (280)
Q Consensus 148 ~~~l~~sl~~Lg~d~iDl~~lH~pd~-------~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~-~ 219 (280)
.+.+++.++.|=-.-+|=+++-.-.- ....++++...+..+...--.+|++..+.+...++.+.++..+.. +
T Consensus 28 ~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~v 107 (309)
T cd00952 28 LDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGT 107 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEE
Q ss_pred EEEcccCCccCCCcchhhHHHHHHHc-CCeEEEc
Q 023606 220 ASNQVNYSLIYRKPEENGVKAACDEL-GITLIAY 252 (280)
Q Consensus 220 ~~~q~~~n~~~~~~~~~~l~~~~~~~-gi~i~a~ 252 (280)
.+....|.....+.-..-.-+.|+.. +++++.|
T Consensus 108 lv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iY 141 (309)
T cd00952 108 MLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIY 141 (309)
T ss_pred EECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEE
No 353
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=26.12 E-value=5e+02 Score=23.59 Aligned_cols=95 Identities=15% Similarity=0.160 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEecCCC-----CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCC
Q 023606 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI-----WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP 218 (280)
Q Consensus 144 ~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-----~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~ 218 (280)
.+.+++.+.+.+++.++|++=++..-.-+. .+..+.+++|++..+++.- ..++.++-..... ..+.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~------~~~aS~~YA~AAl--~~g~- 201 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDP------EISASMLYAYAAL--EAGV- 201 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-T------THHHHHHHHHHHH--HTTE-
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCC------cCChHHHHHHHHH--HCCC-
Confidence 456789999999999998666666655443 2345689999999887632 1223333222222 1222
Q ss_pred EEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 219 LASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 219 ~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
+-+|=.+=+..+ .+ ++.+.++++|+.+..
T Consensus 202 ~fvN~tP~~~a~-~P---~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 202 PFVNGTPSNIAD-DP---ALVELAEEKGVPIAG 230 (295)
T ss_dssp EEEE-SSSTTTT-SH---HHHHHHHHHTEEEEE
T ss_pred CeEeccCccccC-CH---HHHHHHHHcCCCeec
Confidence 222222222221 11 589999999999875
No 354
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=26.11 E-value=3.8e+02 Score=23.87 Aligned_cols=143 Identities=12% Similarity=0.037 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHH--CCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHH
Q 023606 72 RKMKAAKAAFDTSLD--NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLA 149 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~--~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~ 149 (280)
.++++..++++.|.+ .|+.-+-..+.| -....+.|+... -.++-|+|=++.+....+.+.-..
T Consensus 23 ~T~~~I~~lc~eA~~~~~~faaVcV~P~~-----------v~~a~~~L~~~~----~~~vkv~tVigFP~G~~~t~~K~~ 87 (257)
T PRK05283 23 DTDEKVIALCHQAKTPVGNTAAICIYPRF-----------IPIARKTLREQG----TPEIRIATVTNFPHGNDDIDIALA 87 (257)
T ss_pred CCHHHHHHHHHHHHhcCCCeeEEEECHHH-----------HHHHHHHhcccC----CCCCeEEEEecCCCCCCcHHHHHH
Confidence 567899999999999 577766665555 444555554321 015777777775444455555556
Q ss_pred HHHHHHHHhCCCcccEEEEecC-CCCCchhHHHHHHHHHHc---Cc-ccEEEec-CccHH-HHHHHHHHHHhcCCCEEEE
Q 023606 150 ALKDSLFRLGLSSVELYQLHWA-GIWGNEGFIDGLGDAVEQ---GL-VKAVGVS-NYSEK-RLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 150 ~l~~sl~~Lg~d~iDl~~lH~p-d~~~~~~~~~~L~~lk~~---G~-ir~iGvS-~~~~~-~i~~~~~~~~~~~~~~~~~ 222 (280)
..+..++. |.|-||+++==.. -..+.+.+.+.+.++++. |. +|-|==+ -.+.+ .+.++.+.+...+..|.=-
T Consensus 88 Ea~~Ai~~-GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKT 166 (257)
T PRK05283 88 ETRAAIAY-GADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKT 166 (257)
T ss_pred HHHHHHHc-CCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEc
Confidence 66666664 9999998753211 112234455555655553 33 3333222 23555 4777877776666566555
Q ss_pred cccCCccC
Q 023606 223 QVNYSLIY 230 (280)
Q Consensus 223 q~~~n~~~ 230 (280)
-..|..-.
T Consensus 167 STGf~~~g 174 (257)
T PRK05283 167 STGKVPVN 174 (257)
T ss_pred CCCCCCCC
Confidence 55665433
No 355
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=26.05 E-value=5.5e+02 Score=24.07 Aligned_cols=152 Identities=14% Similarity=0.002 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (280)
.++..+.+..+++.|++.|=.-- |...- ..+...=+++++... .++-|..=.. ..++.+.-. +
T Consensus 161 ~~~~~~~a~~~~~~Gf~~~Kikv--g~~~~----~~di~~v~avRe~~G----~~~~l~vDaN---~~w~~~~A~----~ 223 (385)
T cd03326 161 LGRLRDEMRRYLDRGYTVVKIKI--GGAPL----DEDLRRIEAALDVLG----DGARLAVDAN---GRFDLETAI----A 223 (385)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC--CCCCH----HHHHHHHHHHHHhcC----CCCeEEEECC---CCCCHHHHH----H
Confidence 35566677777899999765421 11000 002222344444321 2333333331 234443322 2
Q ss_pred HHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcc-cEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCC
Q 023606 154 SLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLV-KAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRK 232 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~i-r~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~ 232 (280)
.++.|. .+++.++-.|-+ .+-++.+.+|++...+ -..|=|-++...+.++++.-.. .-.++++|+...-+---
T Consensus 224 ~~~~l~--~~~~~~iEeP~~---~~d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~-~~~~div~~d~~~~GGi 297 (385)
T cd03326 224 YAKALA--PYGLRWYEEPGD---PLDYALQAELADHYDGPIATGENLFSLQDARNLLRYGGM-RPDRDVLQFDPGLSYGL 297 (385)
T ss_pred HHHHhh--CcCCCEEECCCC---ccCHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCc-cccCCEEEeCchhhCCH
Confidence 333332 346666666543 2347778888877655 3666777788888888764100 00137777776544322
Q ss_pred cchhhHHHHHHHcCCe
Q 023606 233 PEENGVKAACDELGIT 248 (280)
Q Consensus 233 ~~~~~l~~~~~~~gi~ 248 (280)
.+...+.+.|+.+|+.
T Consensus 298 t~~~kia~lA~a~gi~ 313 (385)
T cd03326 298 PEYLRMLDVLEAHGWS 313 (385)
T ss_pred HHHHHHHHHHHHcCCC
Confidence 2223588899999997
No 356
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.00 E-value=5.4e+02 Score=23.91 Aligned_cols=91 Identities=8% Similarity=0.093 Sum_probs=59.3
Q ss_pred EEEEecCCC------------CCchhHHHHHHHHHHc-Cc---ccEEEecCc--cHHHHHHHHHHHHhcCCCEEEEcccC
Q 023606 165 LYQLHWAGI------------WGNEGFIDGLGDAVEQ-GL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNY 226 (280)
Q Consensus 165 l~~lH~pd~------------~~~~~~~~~L~~lk~~-G~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (280)
.+.||.|+. ++.+++++++.++.++ |+ ++++=+.++ +.+.++++.+.++.. +..++-++|
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l--~~kVnLIPy 292 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSL--DCKINVIPL 292 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhC--CCcEEEEcc
Confidence 467788764 3357888888877644 22 345545444 678888888887654 356677888
Q ss_pred CccCC---Ccch---hhHHHHHHHcCCeEEEcccCcC
Q 023606 227 SLIYR---KPEE---NGVKAACDELGITLIAYCPIAQ 257 (280)
Q Consensus 227 n~~~~---~~~~---~~l~~~~~~~gi~i~a~spl~~ 257 (280)
|.... .+.. ....+..+++||.+......|.
T Consensus 293 N~~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 293 NTEFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 87431 1111 1356677888999999877653
No 357
>COG2260 Predicted Zn-ribbon RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=25.99 E-value=47 Score=22.53 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=11.4
Q ss_pred CCCCCCccCCCCCC
Q 023606 264 RNWWFHCLKLSDEN 277 (280)
Q Consensus 264 ~~~~~~~~~~~~~~ 277 (280)
.....|||+||+||
T Consensus 26 ~t~~~~PprFSPeD 39 (59)
T COG2260 26 DTKVPHPPRFSPED 39 (59)
T ss_pred ccccCCCCCCCccc
Confidence 35568999999997
No 358
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=25.82 E-value=1.1e+02 Score=24.04 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHCCCCeEE
Q 023606 75 KAAKAAFDTSLDNGITFFD 93 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~D 93 (280)
.|...+-..|-+.|+...+
T Consensus 22 ~Q~~~l~~~a~~~g~~i~~ 40 (140)
T cd03770 22 NQKAILEEYAKENGLENIR 40 (140)
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 3444455556677776544
No 359
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=25.65 E-value=2.1e+02 Score=25.77 Aligned_cols=53 Identities=15% Similarity=0.390 Sum_probs=36.2
Q ss_pred ccHHHHHHHHHHHHhcCCCEEEEcccCCccCC--------C----cchhhHHHHHHHcCCeEEEc
Q 023606 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYR--------K----PEENGVKAACDELGITLIAY 252 (280)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~--------~----~~~~~l~~~~~~~gi~i~a~ 252 (280)
.+.+.++++++..++.+++++++++...-... + ++..++++..+++|+.++.+
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~ 85 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLW 85 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEE
Confidence 46677788777778888888876665322111 1 12236899999999999886
No 360
>PRK08123 histidinol-phosphatase; Reviewed
Probab=25.38 E-value=2.6e+02 Score=24.67 Aligned_cols=48 Identities=23% Similarity=0.319 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCc--c-CCCcchhhHHHHHHHcCCeEEE
Q 023606 203 KRLRNAYEKLKKRGIPLASNQVNYSL--I-YRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n~--~-~~~~~~~~l~~~~~~~gi~i~a 251 (280)
+.++++++.+.+.+..+.+|-..+.- . ...+. ..+++.|++.|+.++.
T Consensus 197 ~~~~~il~~~~~~g~~lEINtsgl~~~~~~~~yP~-~~il~~~~e~g~~itl 247 (270)
T PRK08123 197 ELIEDILALIKKRGYELDFNTAGLRKPYCGEPYPP-GEIITLAKKLGIPLVY 247 (270)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCc-HHHHHHHHHcCCCEEE
Confidence 46788888888888777777544321 1 12222 2599999999998764
No 361
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=25.35 E-value=3.8e+02 Score=25.45 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=43.2
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHH
Q 023606 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAA 241 (280)
Q Consensus 162 ~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~ 241 (280)
.+|++.++.....+.+++.+..++..+.=. ..+=+.+.+++.++++++.+... +|-+.- ...+..+ ++.+.
T Consensus 69 ~~D~Ialr~~S~DPae~fa~~vk~V~~a~~-~PLIL~~~D~evl~aale~~~~~--kpLL~a-----At~eNyk-~m~~l 139 (386)
T PF03599_consen 69 GADMIALRLESGDPAEEFAKAVKKVAEAVD-VPLILCGCDPEVLKAALEACAGK--KPLLYA-----ATEENYK-AMAAL 139 (386)
T ss_dssp E-SEEEEE-GGGSTHHHHHHHHHHHHHC-S-SEEEEESSHHHHHHHHHHHTTTS----EEEE-----EBTTTHH-HHHHH
T ss_pred cccEEEEEecCCChHHHHHHHHHHHHHhcC-CCEEEEeCCHHHHHHHHHHhCcC--CcEEeE-----cCHHHHH-HHHHH
Confidence 567777776543223566666666655432 23334444777777777765422 222211 1111112 47777
Q ss_pred HHHcCCeEEEcccCc
Q 023606 242 CDELGITLIAYCPIA 256 (280)
Q Consensus 242 ~~~~gi~i~a~spl~ 256 (280)
|+++|.++++.+|..
T Consensus 140 A~~y~~pl~v~sp~D 154 (386)
T PF03599_consen 140 AKEYGHPLIVSSPID 154 (386)
T ss_dssp HHHCT-EEEEE-SSC
T ss_pred HHHcCCeEEEEeccc
Confidence 788888888777653
No 362
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=25.19 E-value=81 Score=30.13 Aligned_cols=52 Identities=17% Similarity=0.300 Sum_probs=31.5
Q ss_pred CCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCC--eEEcccc
Q 023606 44 SDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGIT--FFDTAEV 97 (280)
Q Consensus 44 tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin--~~DTA~~ 97 (280)
-|+...+|-||.-.+|.. .|...+. +.--+.+.+++...+++|++ |+||+=.
T Consensus 78 ~g~~~~~iiLGGDHLGP~-~w~~lpa-eeAM~~A~~li~ayv~AGF~KIHLD~Sm~ 131 (424)
T PF08013_consen 78 VGFPRDRIILGGDHLGPN-PWQHLPA-EEAMAKAKELIRAYVEAGFTKIHLDCSMD 131 (424)
T ss_dssp CT--GGGEEEEEEEESSC-CCTTSBH-HHHHHHHHHHHHHHHCTT--EEEE---C-
T ss_pred cCCchhhEEecCCCCCcc-cccCCCH-HHHHHHHHHHHHHHHHcCCceEeecCCCC
Confidence 356667899998888763 4655432 23445688999999999999 8888743
No 363
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=24.98 E-value=19 Score=33.64 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=0.0
Q ss_pred ceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhh---HHHHHHHHhcccCCCC
Q 023606 50 KLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSE---TLLGRFIKERKQRDPE 126 (280)
Q Consensus 50 ~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE---~~lG~aL~~~~~~~~R 126 (280)
.+|+..+ .+..+.++..+.|+.|-+.|++.+-|+=+...... + ..+.+.++... .
T Consensus 1 mlGiSvY------------~~~~~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~------~~~~~~~~~l~~~a~----~ 58 (357)
T PF05913_consen 1 MLGISVY------------PGQSSFEENKAYIEKAAKYGFKRIFTSLHIPEDDP------EDYLERLKELLKLAK----E 58 (357)
T ss_dssp EEEEEE-------------CCCS-HHHHHHHHHHHHCTTEEEEEEEE---------------HHHHHHHHHHHHH----H
T ss_pred CcEEEEe------------CCCCCHHHHHHHHHHHHHCCCCEEECCCCcCCCCH------HHHHHHHHHHHHHHH----H
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC----CCchhHHHHHHHHHHcCcccEEEecCccH
Q 023606 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI----WGNEGFIDGLGDAVEQGLVKAVGVSNYSE 202 (280)
Q Consensus 127 ~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~----~~~~~~~~~L~~lk~~G~ir~iGvS~~~~ 202 (280)
..+.|..-+.+ .+|+.||.++-|+-.++.... .+..-..+.+.+|-++|.--.+=.|+.+.
T Consensus 59 ~~~~v~~Disp---------------~~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~~~~ia~ls~ng~~I~LNASti~~ 123 (357)
T PF05913_consen 59 LGMEVIADISP---------------KVLKKLGISYDDLSFFKELGIDGLRLDYGFSGEEIAKLSKNGIKIELNASTITE 123 (357)
T ss_dssp CT-EEEEEE-C---------------CHHHTTT-BTTBTHHHHHHT-SEEEESSS-SCHHHHHHTTT-SEEEEETTT--C
T ss_pred CCCEEEEECCH---------------HHHHHcCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHhCCCEEEEECCCCCh
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCccCCCcch-------hhHHHHHHHcCCeEEEccc
Q 023606 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE-------NGVKAACDELGITLIAYCP 254 (280)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~-------~~l~~~~~~~gi~i~a~sp 254 (280)
+.++++.+. ..=--.-.-+|-+++++++ .+.=++.++.||.+.|+-|
T Consensus 124 ~~l~~L~~~-----~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~ 177 (357)
T PF05913_consen 124 EELDELIKY-----GANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIP 177 (357)
T ss_dssp CHHHHHCCT-----T--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHHHh-----cCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEec
No 364
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.97 E-value=2e+02 Score=26.47 Aligned_cols=52 Identities=17% Similarity=0.411 Sum_probs=34.5
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEccc---------------C-----------CccC-----CCcchhhHHHHHHHcCCeE
Q 023606 201 SEKRLRNAYEKLKKRGIPLASNQVN---------------Y-----------SLIY-----RKPEENGVKAACDELGITL 249 (280)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~---------------~-----------n~~~-----~~~~~~~l~~~~~~~gi~i 249 (280)
+.+.++++++..++.+++++++.+. | +-.. +-++-.++++..+++|+.+
T Consensus 22 ~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv 101 (340)
T cd06597 22 TQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKV 101 (340)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEE
Confidence 5677777777777778888886553 1 1110 1122247999999999999
Q ss_pred EEc
Q 023606 250 IAY 252 (280)
Q Consensus 250 ~a~ 252 (280)
+.|
T Consensus 102 ~l~ 104 (340)
T cd06597 102 LLW 104 (340)
T ss_pred EEE
Confidence 765
No 365
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=24.95 E-value=4.9e+02 Score=23.12 Aligned_cols=18 Identities=6% Similarity=-0.086 Sum_probs=13.6
Q ss_pred hHHHHHHHcCCeEEEccc
Q 023606 237 GVKAACDELGITLIAYCP 254 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~sp 254 (280)
+...++++.|.+|+....
T Consensus 214 g~a~LA~k~~apvvpv~~ 231 (298)
T PRK08419 214 IASILARRYNALIIPVFI 231 (298)
T ss_pred hHHHHHHHHCCCEEEEEE
Confidence 456788888998887665
No 366
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=24.92 E-value=5.5e+02 Score=23.68 Aligned_cols=125 Identities=21% Similarity=0.234 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCC---CCCcEEEEecCCCCCCCCCHHHH
Q 023606 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD---PEVEVTVATKFAALPWRLGRQSV 147 (280)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~---~R~~~~I~tK~~~~~~~~~~~~i 147 (280)
..+.++...+++.|.+.|++=+=-+ |. |..+-+-|......- .-+++-++|-. .+
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlT---GG---------EPllR~dl~eIi~~l~~~~~~~islTTNG----------~~ 99 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLT---GG---------EPLLRKDLDEIIARLARLGIRDLSLTTNG----------VL 99 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEe---CC---------CchhhcCHHHHHHHHhhcccceEEEecch----------hh
Confidence 3567999999999999999855422 22 333333222221100 02567777665 25
Q ss_pred HHHHHHHHHHhCCCcccEEEEecCCC---------CCchhHHHHHHHHHHcCc----ccEEEecCccHHHHHHHHHHHHh
Q 023606 148 LAALKDSLFRLGLSSVELYQLHWAGI---------WGNEGFIDGLGDAVEQGL----VKAVGVSNYSEKRLRNAYEKLKK 214 (280)
Q Consensus 148 ~~~l~~sl~~Lg~d~iDl~~lH~pd~---------~~~~~~~~~L~~lk~~G~----ir~iGvS~~~~~~i~~~~~~~~~ 214 (280)
......-|+.-|++.|. +.+|..|+ ...+.+++.++++++.|. |-.+=+.+.+-++|..+++++..
T Consensus 100 L~~~a~~Lk~AGl~rVN-VSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~ 178 (322)
T COG2896 100 LARRAADLKEAGLDRVN-VSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKE 178 (322)
T ss_pred HHHHHHHHHHcCCcEEE-eecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhh
Confidence 56667778888887776 35555554 125788899999999886 34555666778888888888776
Q ss_pred cCCC
Q 023606 215 RGIP 218 (280)
Q Consensus 215 ~~~~ 218 (280)
.+..
T Consensus 179 ~~~~ 182 (322)
T COG2896 179 RGAQ 182 (322)
T ss_pred cCCc
Confidence 6543
No 367
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.88 E-value=5.8e+02 Score=23.86 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=64.3
Q ss_pred EEecCCC------------CCchhHHHHHHHHH-HcCc---ccEEEecCc--cHHHHHHHHHHHHhcCCCEEEEcccCCc
Q 023606 167 QLHWAGI------------WGNEGFIDGLGDAV-EQGL---VKAVGVSNY--SEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (280)
Q Consensus 167 ~lH~pd~------------~~~~~~~~~L~~lk-~~G~---ir~iGvS~~--~~~~i~~~~~~~~~~~~~~~~~q~~~n~ 228 (280)
-||.++. ++.+++++++.++. +.|+ |+++=+.++ +.+.++++.+.++. .+..++-++||+
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~--l~~~VnLIPyn~ 302 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNG--IKAKVNLILFNP 302 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhh--cCcEEEEEeCCC
Confidence 4888875 22356888887554 4443 577767665 68999999888764 457888899998
Q ss_pred cCCC----cchh---hHHHHHHHcCCeEEEcccCc------CCCCCCCC
Q 023606 229 IYRK----PEEN---GVKAACDELGITLIAYCPIA------QGSKPRKR 264 (280)
Q Consensus 229 ~~~~----~~~~---~l~~~~~~~gi~i~a~spl~------~G~L~~~~ 264 (280)
+... +... ...+..+++|+.+......| +|.|..+.
T Consensus 303 ~~~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI~aACGQL~~~~ 351 (356)
T PRK14462 303 HEGSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDISAACGQLREKK 351 (356)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchhhcCccchhhh
Confidence 7632 2211 24556678899999887764 46665544
No 368
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=24.85 E-value=3.3e+02 Score=25.38 Aligned_cols=156 Identities=12% Similarity=0.102 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCC---CCCCCHHHHHH
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL---PWRLGRQSVLA 149 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~---~~~~~~~~i~~ 149 (280)
+.++-.+.|+.+.+.|+..+-|+=.++.+.+ |..+-.+-+ .....++..+.+..-+.+. +-+.|.+.
T Consensus 14 ~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~------~~~~~~~~e-ll~~Anklg~~vivDvnPsil~~l~~S~~~--- 83 (360)
T COG3589 14 PKEKDIAYIDRMHKYGFKRIFTSLLIPEEDA------ELYFHRFKE-LLKEANKLGLRVIVDVNPSILKELNISLDN--- 83 (360)
T ss_pred cchhHHHHHHHHHHcCccceeeecccCCchH------HHHHHHHHH-HHHHHHhcCcEEEEEcCHHHHhhcCCChHH---
Confidence 3466678999999999999999999998765 444433221 1100013455555444320 00111111
Q ss_pred HHHHHHHHhCCC--cccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEc-ccC
Q 023606 150 ALKDSLFRLGLS--SVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQ-VNY 226 (280)
Q Consensus 150 ~l~~sl~~Lg~d--~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q-~~~ 226 (280)
...+..+|++ ++| ..-.-++..++-++++--.+-.|+.+. .+..++.. .....+ .-|
T Consensus 84 --l~~f~e~G~~glRlD-----------~gfS~eei~~ms~~~lkieLN~S~it~-~l~~l~~~------~an~~nl~~c 143 (360)
T COG3589 84 --LSRFQELGVDGLRLD-----------YGFSGEEIAEMSKNPLKIELNASTITE-LLDSLLAY------KANLENLEGC 143 (360)
T ss_pred --HHHHHHhhhhheeec-----------ccCCHHHHHHHhcCCeEEEEchhhhHH-HHHHHHHh------ccchhhhhhc
Confidence 1222333332 112 111234444555666444455555544 55555543 222211 223
Q ss_pred CccCCCcchh-------hHHHHHHHcCCeEEEcccCcCC
Q 023606 227 SLIYRKPEEN-------GVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 227 n~~~~~~~~~-------~l~~~~~~~gi~i~a~spl~~G 258 (280)
|-+.+.++.- ..=++.+++++.+.|+-+-.+.
T Consensus 144 HNyYPr~yTGLS~e~f~~kn~~fk~~~i~t~AFis~~~~ 182 (360)
T COG3589 144 HNYYPRPYTGLSREHFKRKNEIFKEYNIKTAAFISSDGA 182 (360)
T ss_pred ccccCCcccCccHHHHHHHHHHHHhcCCceEEEEecCCc
Confidence 4444444331 2356788999999988655433
No 369
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=24.60 E-value=5.3e+02 Score=23.38 Aligned_cols=51 Identities=10% Similarity=0.231 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHHcCcccEEEe---cCccHHHHHHHHHHHHhcCCCEEEEcccC
Q 023606 176 NEGFIDGLGDAVEQGLVKAVGV---SNYSEKRLRNAYEKLKKRGIPLASNQVNY 226 (280)
Q Consensus 176 ~~~~~~~L~~lk~~G~ir~iGv---S~~~~~~i~~~~~~~~~~~~~~~~~q~~~ 226 (280)
.+.++++++.|++.|.--.+-+ .+.+.+++.++++.+...+++...++..|
T Consensus 148 f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~ 201 (318)
T TIGR03470 148 FDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGY 201 (318)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 4578999999999986333322 34678999999999888777544444433
No 370
>TIGR00188 rnpA ribonuclease P protein component, eubacterial. The yeast mitochondrial RNase P protein component gene RPM2 has no obvious sequence similarity to rnpA, but resembles eukaryotic nuclear RNase P instead.
Probab=24.50 E-value=3e+02 Score=20.55 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=40.6
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCcccEEEEecCCC--CCchhHHHHHHHH
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDA 186 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg--~d~iDl~~lH~pd~--~~~~~~~~~L~~l 186 (280)
|=-+.|+-|++ .-..+..+++.++++++... ....|++++-.+.. .+..++.+.|++|
T Consensus 42 RlGi~vsKK~g---~AV~RNriKR~lRe~~R~~~~~l~~~d~v~i~r~~~~~~~~~~l~~~l~~l 103 (105)
T TIGR00188 42 RVGLSVSKKVK---NAVERNRIKRLIREVFRERQELLKALDVVVIVRKGFSELTYEAFLKLLLQL 103 (105)
T ss_pred EEEEEEecccC---chhHHHHHHHHHHHHHHHhhcccCCccEEEEECCCcCcCCHHHHHHHHHHH
Confidence 56677888876 35667778888888887653 33689999988765 4456666666665
No 371
>PF13289 SIR2_2: SIR2-like domain
Probab=24.39 E-value=2.4e+02 Score=21.56 Aligned_cols=68 Identities=13% Similarity=0.152 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCC--EEEEcccCCccCCCcchhhHHHHHHHcCCeEE
Q 023606 177 EGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIP--LASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (280)
Q Consensus 177 ~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~--~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~ 250 (280)
..+++.+..+.....+-.||.|--++ .+..+++.+...... ....- +.+........++.+++||.+|
T Consensus 74 ~~~~~~l~~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGKSRPRHYI-----VIPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccCCCccEEE-----EEcCCchHHHHHHHHHcCCEEC
Confidence 55778888888888999999996554 555555444333211 11111 1111111246778889998774
No 372
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.31 E-value=4.8e+02 Score=22.76 Aligned_cols=87 Identities=9% Similarity=-0.052 Sum_probs=50.8
Q ss_pred ccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHH
Q 023606 163 VELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAAC 242 (280)
Q Consensus 163 iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~ 242 (280)
.++.++-.|-+ .+-++.+.++. -+.=-..|=|-++...+.++++. ..++++|+....+.--.+...+.+.|
T Consensus 153 ~~i~~iEqP~~---~~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~-----~~~d~v~~k~~~~GGit~~~~i~~~a 223 (263)
T cd03320 153 GRIEYIEQPLP---PDDLAELRRLA-AGVPIALDESLRRLDDPLALAAA-----GALGALVLKPALLGGPRALLELAEEA 223 (263)
T ss_pred cCCceEECCCC---hHHHHHHHHhh-cCCCeeeCCccccccCHHHHHhc-----CCCCEEEECchhcCCHHHHHHHHHHH
Confidence 45555655532 23456666665 33334556566666667666554 34666666655433212223589999
Q ss_pred HHcCCeEEEcccCcCC
Q 023606 243 DELGITLIAYCPIAQG 258 (280)
Q Consensus 243 ~~~gi~i~a~spl~~G 258 (280)
+++|+.++..+-+..+
T Consensus 224 ~~~gi~~~~~~~~es~ 239 (263)
T cd03320 224 RARGIPAVVSSALESS 239 (263)
T ss_pred HHcCCCEEEEcchhhH
Confidence 9999999886554433
No 373
>PRK10508 hypothetical protein; Provisional
Probab=24.21 E-value=93 Score=28.70 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHH
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE 188 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~ 188 (280)
.+++.+.+.|++..+++|+|.+ +++.+. .+.+..++.++-|.+
T Consensus 286 Gtpe~V~~kl~~l~~~~g~del---~~~~~~-~~~e~~~~S~~lla~ 328 (333)
T PRK10508 286 GDKAKVRHGLQSILRETQADEI---MVNGQI-FDHQARLHSFELAMD 328 (333)
T ss_pred eCHHHHHHHHHHHHHHHCcCEE---EEECCC-CCHHHHHHHHHHHHH
Confidence 6788888888888888888776 233322 355555665554443
No 374
>PRK07360 FO synthase subunit 2; Reviewed
Probab=24.07 E-value=4.6e+02 Score=24.40 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=25.8
Q ss_pred HHHHHHHHHcCcccEEEecC---------------ccHHHHHHHHHHHHhcCCCE
Q 023606 180 IDGLGDAVEQGLVKAVGVSN---------------YSEKRLRNAYEKLKKRGIPL 219 (280)
Q Consensus 180 ~~~L~~lk~~G~ir~iGvS~---------------~~~~~i~~~~~~~~~~~~~~ 219 (280)
-+.+++|++.|.-++.|.+. .+.+...+.++.+.+.|+++
T Consensus 163 ~e~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~ 217 (371)
T PRK07360 163 EEVLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPT 217 (371)
T ss_pred HHHHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCc
Confidence 46788888888877765431 24455566667677767654
No 375
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=24.01 E-value=6.5e+02 Score=26.79 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=60.5
Q ss_pred EcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCC
Q 023606 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAG 172 (280)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd 172 (280)
+..-.||. |+.|-++|++.....+.+-++|.|=+.. ..-.+.+..-+++.-++++ +.++.++.|+
T Consensus 89 E~diVfGG---------~~kL~~aI~~~~~~~~P~~I~V~tTC~~---elIGDDi~~v~~~~~~~~~---~pvi~v~tpG 153 (917)
T PRK14477 89 ENDVIFGG---------EKKLYRAILELAERYQPKAVFVYATCVT---ALTGDDVEAVCKAAAEKVG---IPVIPVNTPG 153 (917)
T ss_pred cCceeeCc---------HHHHHHHHHHHHHhcCCCEEEEECCchH---HHhccCHHHHHHHHHHhhC---CcEEEEECCC
Confidence 34457886 8888888887654333456667766531 2222333333443333333 5788999988
Q ss_pred CCC--ch---hHHHH-HHHHHH--------cCcccEEEecCccHHHHHHHHHHHHhcCCCEE
Q 023606 173 IWG--NE---GFIDG-LGDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLA 220 (280)
Q Consensus 173 ~~~--~~---~~~~~-L~~lk~--------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~ 220 (280)
... .. ..+++ ++++.. .+.|--||-.++. ..+.++.+..+..++++.
T Consensus 154 F~gs~~~G~~~a~~al~~~l~~~~~p~~~~~~~VNliG~~~~~-gd~~elk~lL~~~Gi~v~ 214 (917)
T PRK14477 154 FIGDKNIGNRLAGEALLKHVIGTAEPEVTTPYDINLIGEYNIA-GDLWGMLPLFDRLGIRVL 214 (917)
T ss_pred ccCchhhHHHHHHHHHHHHHHhhcCCCCCCCCcEEEECCCCCc-chHHHHHHHHHHcCCeEE
Confidence 732 11 22222 233331 3668888866653 233444444555666643
No 376
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=23.92 E-value=5.3e+02 Score=23.28 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHHHhCC--------------------------CcccEEEEecCCC----CCchhHHHHHHHHHHcC
Q 023606 141 RLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLHWAGI----WGNEGFIDGLGDAVEQG 190 (280)
Q Consensus 141 ~~~~~~i~~~l~~sl~~Lg~--------------------------d~iDl~~lH~pd~----~~~~~~~~~L~~lk~~G 190 (280)
......+++.++.-|+|+++ -..|++.|..|-. ...+-.-++..+++++|
T Consensus 101 Gm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~G 180 (300)
T COG4152 101 GMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEG 180 (300)
T ss_pred CCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcC
Confidence 35566677777777777743 2345555555543 11344566778899999
Q ss_pred cccEEEecCccHHHHHHHHHH
Q 023606 191 LVKAVGVSNYSEKRLRNAYEK 211 (280)
Q Consensus 191 ~ir~iGvS~~~~~~i~~~~~~ 211 (280)
..|=+|+|..++++++.+.
T Consensus 181 --atIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 181 --ATIIFSSHRMEHVEELCDR 199 (300)
T ss_pred --CEEEEecchHHHHHHHhhh
Confidence 4788999999999998664
No 377
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.89 E-value=2.2e+02 Score=25.60 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHHHhcCCCEEEEccc--CCc-------------cC----CCcchhhHHHHHHHcCCeEEEcc
Q 023606 200 YSEKRLRNAYEKLKKRGIPLASNQVN--YSL-------------IY----RKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~q~~--~n~-------------~~----~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
.+.+.++++++..++.++|++++.+. |+- +. +-++-.++++.++++|+.++.+.
T Consensus 22 ~s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 22 YSDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEe
Confidence 46788888888888888998887664 221 11 11222379999999999998874
No 378
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.83 E-value=5.4e+02 Score=23.20 Aligned_cols=144 Identities=12% Similarity=0.106 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCC-CCCCCCHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAA-LPWRLGRQSVLAALKD 153 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~-~~~~~~~~~i~~~l~~ 153 (280)
.-..++-....++|+|..|...+ .. . . .+.+|....+-. .+...+.+.+++.++.
T Consensus 21 GIVA~Vs~~Lae~g~NI~disq~-~d--~----------------~-----~~~ffm~i~~~~~~~~~~~~~~l~~~l~~ 76 (289)
T PRK13010 21 GIVAAVSGFLAEKGCYIVELTQF-DD--D----------------E-----SGRFFMRVSFHAQSAEAASVDTFRQEFQP 76 (289)
T ss_pred CcHHHHHHHHHHCCCCEEecccc-cc--c----------------c-----cCcEEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 45666777778999999997765 21 0 0 245665433321 1135678889999999
Q ss_pred HHHHhCCCcccEEEEecCCC--------CCchhHHHHHHHHHHcCcc--cEEE-ecCccHHHHHHHHHHHHhcCCCEEEE
Q 023606 154 SLFRLGLSSVELYQLHWAGI--------WGNEGFIDGLGDAVEQGLV--KAVG-VSNYSEKRLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH~pd~--------~~~~~~~~~L~~lk~~G~i--r~iG-vS~~~~~~i~~~~~~~~~~~~~~~~~ 222 (280)
.-+.||++ +.++..+. -....-+++|-...++|.+ .-.+ +||++ +. .+.+++.++++.++
T Consensus 77 l~~~l~l~----~~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~~l~~~i~~visn~~-~~----~~~A~~~gIp~~~~ 147 (289)
T PRK13010 77 VAEKFDMQ----WAIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMGELDMDIVGIISNHP-DL----QPLAVQHDIPFHHL 147 (289)
T ss_pred HHHHhCCe----EEEecCCCCeEEEEEEeCCCccHHHHHHHHHCCCCCcEEEEEEECCh-hH----HHHHHHcCCCEEEe
Confidence 99999975 34444332 1244568888888888864 4444 35543 32 24456667776554
Q ss_pred cccCCccCCCcchhhHHHHHHHcCCeEEEcc
Q 023606 223 QVNYSLIYRKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 223 q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
. ....+....+..+++.+++.++-++.-.
T Consensus 148 ~--~~~~~~~~~~~~~~~~l~~~~~Dlivla 176 (289)
T PRK13010 148 P--VTPDTKAQQEAQILDLIETSGAELVVLA 176 (289)
T ss_pred C--CCcccccchHHHHHHHHHHhCCCEEEEe
Confidence 3 2222332223358889999887765543
No 379
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=23.80 E-value=3.4e+02 Score=21.88 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=42.7
Q ss_pred CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCcccEEEEecCCC--CCchhHHHHHHHHHHc
Q 023606 126 EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQLHWAGI--WGNEGFIDGLGDAVEQ 189 (280)
Q Consensus 126 R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg--~d~iDl~~lH~pd~--~~~~~~~~~L~~lk~~ 189 (280)
|=-+.|+-|++. .-..+..+++.++++++.+. +...|++++-.+.. .+..++.+.|.+|.+.
T Consensus 49 RlG~sVSKKvg~--~AV~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 49 RLGLAVSRKVDT--RAVGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred EEEEEEeccccC--cchhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 566778878743 24567778888888887652 33459999987764 4566777777777655
No 380
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=23.72 E-value=4.5e+02 Score=22.26 Aligned_cols=112 Identities=11% Similarity=0.031 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
.++++-.++++.+++.|..++|---... ++.+...+.... .+.+++++..-.. ...+.+.+...+
T Consensus 72 ~~~~~~~~ll~~~~~~~~d~iDiE~~~~----------~~~~~~~~~~~~---~~~~iI~S~H~f~--~tp~~~~l~~~~ 136 (224)
T PF01487_consen 72 GSEEEYLELLERAIRLGPDYIDIELDLF----------PDDLKSRLAARK---GGTKIILSYHDFE--KTPSWEELIELL 136 (224)
T ss_dssp S-HHHHHHHHHHHHHHTSSEEEEEGGCC----------HHHHHHHHHHHH---TTSEEEEEEEESS-----THHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEcccc----------hhHHHHHHHHhh---CCCeEEEEeccCC--CCCCHHHHHHHH
Confidence 5678999999999999999999754422 333322222222 1467888777421 334444555555
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHc--CcccEEEecCc
Q 023606 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQ--GLVKAVGVSNY 200 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~--G~ir~iGvS~~ 200 (280)
++.. .+|.|.+=+.....-. .+...+++...++++. ..+-.+++...
T Consensus 137 ~~~~-~~gadivKia~~~~~~-~D~~~l~~~~~~~~~~~~~p~i~~~MG~~ 185 (224)
T PF01487_consen 137 EEMQ-ELGADIVKIAVMANSP-EDVLRLLRFTKEFREEPDIPVIAISMGEL 185 (224)
T ss_dssp HHHH-HTT-SEEEEEEE-SSH-HHHHHHHHHHHHHHHHTSSEEEEEEETGG
T ss_pred HHHH-hcCCCeEEEEeccCCH-HHHHHHHHHHHHHhhccCCcEEEEEcCCC
Confidence 5544 6777655555543211 2344566666666654 34555555554
No 381
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=23.69 E-value=4.9e+02 Score=22.66 Aligned_cols=74 Identities=24% Similarity=0.236 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 144 ~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
...+.+.+++.++++| |.++++. .+...+.....+.++.+.+++ +..|-++..+.+.+...++.+...++++.+
T Consensus 13 ~~~~~~gi~~~a~~~g--~~~~i~~-~~~~~d~~~q~~~i~~l~~~~-vdgiIi~~~~~~~~~~~l~~~~~~giPvV~ 86 (302)
T TIGR02637 13 FEAANKGAEEAAKELG--SVYIIYT-GPTGTTAEGQIEVVNSLIAQK-VDAIAISANDPDALVPALKKAMKRGIKVVT 86 (302)
T ss_pred HHHHHHHHHHHHHHhC--CeeEEEE-CCCCCCHHHHHHHHHHHHHcC-CCEEEEeCCChHHHHHHHHHHHHCCCEEEE
Confidence 4567888888888888 3333332 222234455567777777764 777777776666655555555555565444
No 382
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=23.66 E-value=65 Score=29.99 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=48.1
Q ss_pred CceeeeccCCccCcccccccccccccccccceeecCCCCccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHH
Q 023606 7 GACFSVFSGSRVGNIRAVASEGFATVKTAEDKVKLGGSDLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLD 86 (280)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~r~lg~tg~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~ 86 (280)
|++.|=+-.++|+.+|-+-..+.-..+..-++..-.+ |--|--|.|+|- ...+.++...+
T Consensus 206 tgl~Sram~Sp~G~vrlplN~s~~~~sqi~efl~~y~-G~GIQHIA~~T~-------------------dI~~tv~~lr~ 265 (363)
T COG3185 206 TGLRSRAMVSPCGKVRLPLNESADDKSQIGEFLREYR-GEGIQHIAFGTD-------------------DIYATVAALRE 265 (363)
T ss_pred ccEEEeeEecCCCcEEeecccCCCchhHHHHHHHHhC-CCcceEEEeccc-------------------HHHHHHHHHHH
Confidence 3445555566676776665555544444444444444 555667888776 45668888899
Q ss_pred CCCCeEEccccc
Q 023606 87 NGITFFDTAEVY 98 (280)
Q Consensus 87 ~Gin~~DTA~~Y 98 (280)
+|++++++...|
T Consensus 266 rG~~fl~ip~tY 277 (363)
T COG3185 266 RGVKFLPIPETY 277 (363)
T ss_pred cCCccCCCchhH
Confidence 999999999887
No 383
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=23.66 E-value=4.8e+02 Score=22.51 Aligned_cols=136 Identities=15% Similarity=0.157 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
.++++..++++.|.+.|+.-+-..+.|- ....+.|+. ..+-|+|=++.+......+.-....
T Consensus 19 ~t~~~i~~~~~~A~~~~~~avcv~p~~v-----------~~a~~~l~~-------~~v~v~tVigFP~G~~~~~~K~~e~ 80 (221)
T PRK00507 19 ATEEDIDKLCDEAKEYGFASVCVNPSYV-----------KLAAELLKG-------SDVKVCTVIGFPLGANTTAVKAFEA 80 (221)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEECHHHH-----------HHHHHHhCC-------CCCeEEEEecccCCCChHHHHHHHH
Confidence 5678999999999998888777665552 333344432 3566777665422222222222333
Q ss_pred HHHHHHhCCCcccEEEEecCC--CCCchhHHHHHHHHHHc--Cc-ccEE-EecCccHHHHHHHHHHHHhcCCCEEEEccc
Q 023606 152 KDSLFRLGLSSVELYQLHWAG--IWGNEGFIDGLGDAVEQ--GL-VKAV-GVSNYSEKRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd--~~~~~~~~~~L~~lk~~--G~-ir~i-GvS~~~~~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
++++ ..|.+-||++ +..-. ..+.+.+.+.+.++++. |. +|-| =.+..+.+++.++.+.+...+..|.---..
T Consensus 81 ~~Ai-~~GA~EiD~V-in~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG 158 (221)
T PRK00507 81 KDAI-ANGADEIDMV-INIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTG 158 (221)
T ss_pred HHHH-HcCCceEeee-ccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCC
Confidence 3333 4788999954 43322 13456777777777774 43 2221 122347788888888877766665554455
Q ss_pred CC
Q 023606 226 YS 227 (280)
Q Consensus 226 ~n 227 (280)
|.
T Consensus 159 ~~ 160 (221)
T PRK00507 159 FS 160 (221)
T ss_pred CC
Confidence 54
No 384
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=23.62 E-value=2.1e+02 Score=26.81 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=54.4
Q ss_pred EEEEecCCCCC-chhHHHHHHHHHHc------CcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhh
Q 023606 165 LYQLHWAGIWG-NEGFIDGLGDAVEQ------GLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENG 237 (280)
Q Consensus 165 l~~lH~pd~~~-~~~~~~~L~~lk~~------G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~ 237 (280)
++++-.|-+.. .++-++.+.+|++. +.=-..|-+.++.+.+.++++. -..+++|+..+-+---.+...
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~-----~a~div~~kl~k~GGIt~a~k 303 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADA-----GAAHMVQIKTPDLGGIDNTID 303 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHh-----CCCCEEEecchhcCCHHHHHH
Confidence 34666554311 11347777778766 3335556666788888888665 347777777665433223346
Q ss_pred HHHHHHHcCCeEEEccc
Q 023606 238 VKAACDELGITLIAYCP 254 (280)
Q Consensus 238 l~~~~~~~gi~i~a~sp 254 (280)
+.++|+++||.++..+.
T Consensus 304 ia~lA~a~Gi~~~~h~~ 320 (369)
T cd03314 304 AVLYCKEHGVGAYLGGS 320 (369)
T ss_pred HHHHHHHcCCcEEEeCC
Confidence 89999999999998653
No 385
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.58 E-value=4.7e+02 Score=22.41 Aligned_cols=88 Identities=17% Similarity=0.158 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEE
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLA 220 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~ 220 (280)
.+.+...+-.+ .|...|++.|.+= + ..++.++.+++|+++--=..||..+. +.++.+++++. |-.|.
T Consensus 24 ~~~~~a~~i~~-al~~~Gi~~iEit---l----~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~a----GA~Fi 91 (212)
T PRK05718 24 NKLEDAVPLAK-ALVAGGLPVLEVT---L----RTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEA----GAQFI 91 (212)
T ss_pred CCHHHHHHHHH-HHHHcCCCEEEEe---c----CCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHc----CCCEE
Confidence 34544444333 3444565555544 1 23467788888877643366888876 67777777654 44565
Q ss_pred EEcccCCccCCCcchhhHHHHHHHcCCeEE
Q 023606 221 SNQVNYSLIYRKPEENGVKAACDELGITLI 250 (280)
Q Consensus 221 ~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~ 250 (280)
+. + .... ++++.|++++|.++
T Consensus 92 vs-----P---~~~~-~vi~~a~~~~i~~i 112 (212)
T PRK05718 92 VS-----P---GLTP-PLLKAAQEGPIPLI 112 (212)
T ss_pred EC-----C---CCCH-HHHHHHHHcCCCEe
Confidence 52 1 1122 58888888888877
No 386
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=23.56 E-value=1.6e+02 Score=24.39 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcC
Q 023606 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELG 246 (280)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~g 246 (280)
+.++++++++..+..++.-.++-.-|+..++..|. .+.+.+++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~-~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQ-RVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHH-HHHHHHHhcC
Confidence 44555555555554445544444555555554443 3555555543
No 387
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=23.53 E-value=4e+02 Score=23.21 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEccc
Q 023606 176 NEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCP 254 (280)
Q Consensus 176 ~~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~sp 254 (280)
.++..++|.+|+ +..|..... +..|..++-..|++.+++. |.++.....+ ++++..-+.|..++.-+.
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~------~~PLWg~d~~-ell~e~~~~Gf~~~Iv~V 143 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKV------YAPLWGRDPE-ELLEEMVEAGFEAIIVAV 143 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEE------eecccCCCHH-HHHHHHHHcCCeEEEEEE
Confidence 445555566555 667776665 5667777766677766532 3454433333 588888888888888777
Q ss_pred CcCCCC
Q 023606 255 IAQGSK 260 (280)
Q Consensus 255 l~~G~L 260 (280)
-+.|+-
T Consensus 144 sa~gL~ 149 (223)
T COG2102 144 SAEGLD 149 (223)
T ss_pred eccCCC
Confidence 777763
No 388
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=23.48 E-value=74 Score=32.14 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCccc
Q 023606 152 KDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVK 193 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir 193 (280)
--.|+.||++ |++-+|+.|+.+.+.+..+|++|...|-+.
T Consensus 412 vL~Lkalgi~--d~l~F~f~d~P~~~~l~~AL~~L~~lgald 451 (674)
T KOG0922|consen 412 VLQLKALGIN--DPLRFPFIDPPPPEALEEALEELYSLGALD 451 (674)
T ss_pred HHHHHhcCCC--CcccCCCCCCCChHHHHHHHHHHHhcCccc
Confidence 3457889988 999999999988899999999998765443
No 389
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=23.42 E-value=1.2e+02 Score=22.85 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHH
Q 023606 147 VLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEK 211 (280)
Q Consensus 147 i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~ 211 (280)
+-...+..+...++-++|+=.+-+.|.....-..+.++..|++|+ ++-++. -++++..+.+.
T Consensus 28 lw~~r~~~~~~~~~~~idLs~v~rvDSaglALL~~~~~~~k~~g~--~~~L~~-~p~~L~tLa~L 89 (99)
T COG3113 28 LWSQREAQLKQLDTVRIDLSGVSRVDSAGLALLLHLIRLAKKQGN--AVTLTG-VPEQLRTLAEL 89 (99)
T ss_pred HHHHHHHHccccCeEEEehhhcceechHHHHHHHHHHHHHHHcCC--eeEEec-CcHHHHHHHHH
Confidence 344555666666788999999888887777788999999999997 555555 34777777654
No 390
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.35 E-value=3.2e+02 Score=22.42 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=28.2
Q ss_pred HHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEe
Q 023606 80 AFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVAT 133 (280)
Q Consensus 80 ~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~t 133 (280)
+-....+.|++.......-.+ +..+-++|+.... +.+++|+|
T Consensus 24 l~~~L~~~G~~v~~~~~v~Dd---------~~~I~~~l~~~~~---~~dlVItt 65 (170)
T cd00885 24 LAKELAELGIEVYRVTVVGDD---------EDRIAEALRRASE---RADLVITT 65 (170)
T ss_pred HHHHHHHCCCEEEEEEEeCCC---------HHHHHHHHHHHHh---CCCEEEEC
Confidence 334444679987665444333 7778888887652 57899988
No 391
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=23.34 E-value=3e+02 Score=29.04 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=54.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCC--------------------------CcccEEEEecCCC----CCchhHHHHHHHHHHc
Q 023606 140 WRLGRQSVLAALKDSLFRLGL--------------------------SSVELYQLHWAGI----WGNEGFIDGLGDAVEQ 189 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~--------------------------d~iDl~~lH~pd~----~~~~~~~~~L~~lk~~ 189 (280)
.+.....+.+.++..|+.+++ ....+++|..|.. .....+|+.+.++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 345666788888888887653 3567888888764 2256899999999999
Q ss_pred CcccEEEecCccHHHHHHHHHH
Q 023606 190 GLVKAVGVSNYSEKRLRNAYEK 211 (280)
Q Consensus 190 G~ir~iGvS~~~~~~i~~~~~~ 211 (280)
|+ +|=+.+|+.++++.+...
T Consensus 748 g~--aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCTR 767 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhhh
Confidence 98 888999999999988654
No 392
>PRK08508 biotin synthase; Provisional
Probab=23.24 E-value=5.3e+02 Score=22.88 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHCCCCeEE
Q 023606 72 RKMKAAKAAFDTSLDNGITFFD 93 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~D 93 (280)
.++++..+.++.+.+.|++-|-
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~ 61 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFC 61 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE
Confidence 5678888899999999997654
No 393
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=23.22 E-value=5.8e+02 Score=23.35 Aligned_cols=25 Identities=12% Similarity=0.200 Sum_probs=18.5
Q ss_pred hHHHHHHHcCCeEEEcccCcCCCCC
Q 023606 237 GVKAACDELGITLIAYCPIAQGSKP 261 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~spl~~G~L~ 261 (280)
..++.+++.|+.+...++|-.|.-.
T Consensus 241 ~ai~~L~~aGi~v~~qtvLl~gvnD 265 (331)
T TIGR00238 241 EAMKKLRTVNVTLLNQSVLLRGVND 265 (331)
T ss_pred HHHHHHHHcCCEEEeecceECCcCC
Confidence 4566777888888888888877543
No 394
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=23.02 E-value=3.6e+02 Score=21.74 Aligned_cols=32 Identities=22% Similarity=0.154 Sum_probs=26.0
Q ss_pred CcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC
Q 023606 127 VEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL 160 (280)
Q Consensus 127 ~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~ 160 (280)
.+++|..|-+. ...+.+.+.+++...|++++.
T Consensus 86 ~DiVviar~~~--~~~~~~~l~~~l~~LL~k~~~ 117 (145)
T PRK04820 86 GDYVVVARSAA--AKASNPQLRDAFLRLLRRAGA 117 (145)
T ss_pred CCEEEEEeCCc--ccCCHHHHHHHHHHHHHHhCc
Confidence 46777777754 578899999999999999875
No 395
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=22.99 E-value=2e+02 Score=26.13 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=36.1
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcccCCcc----------CC--CcchhhHHHHHHHcCCeEEEcc-cC
Q 023606 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLI----------YR--KPEENGVKAACDELGITLIAYC-PI 255 (280)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~----------~~--~~~~~~l~~~~~~~gi~i~a~s-pl 255 (280)
+.+.+++.++..++.+++++++.+...-+ +. -++-.++++.++++|+.++.+. |.
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~ 89 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPT 89 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCC
Confidence 56777777777777778877776663211 11 1122369999999999988763 54
No 396
>TIGR00930 2a30 K-Cl cotransporter.
Probab=22.83 E-value=5.7e+02 Score=27.36 Aligned_cols=90 Identities=8% Similarity=0.054 Sum_probs=65.9
Q ss_pred CCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEE
Q 023606 88 GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQ 167 (280)
Q Consensus 88 Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~ 167 (280)
+-.+||.=+.|.+|.= --++.-.|+.+..++ +.++.|-+... .+.+.+..++.++..|+++++++-|+..
T Consensus 759 ~~~~IDvwW~~~dggL------~lll~~ll~~~~~W~-~~kiRvf~~~~---~~~~~~~~~~~~~~lL~~~RI~a~~~~v 828 (953)
T TIGR00930 759 GKGTIDVWWLVDDGGL------TLLLPYLLTTKKVWK-KCKIRIFVGAQ---KDDRSEQEKKDMATLLYKFRIDAEVIVV 828 (953)
T ss_pred CCceEEEEEecCCCcH------HHHHHHHHhcCcccc-CceEEEEEEec---CCchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4458998888887766 788888888877653 45666666542 3456888999999999999999999888
Q ss_pred EecCCCCCchhHHHHHHHHH
Q 023606 168 LHWAGIWGNEGFIDGLGDAV 187 (280)
Q Consensus 168 lH~pd~~~~~~~~~~L~~lk 187 (280)
.-+.+..+..+.++..+++.
T Consensus 829 ~~di~~~p~~~~~~~~~~~~ 848 (953)
T TIGR00930 829 LMDINAKPQTESMEAFEEMI 848 (953)
T ss_pred eccCCCCcchhHHHHHHHHH
Confidence 76554456666666666655
No 397
>PRK12435 ferrochelatase; Provisional
Probab=22.78 E-value=5.2e+02 Score=23.54 Aligned_cols=76 Identities=12% Similarity=-0.014 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHHHhCCCcccEEEEec---CCCCCchhHHHHHHHHHHc-Cc----ccEEEecCccHHHHHHHH----H
Q 023606 143 GRQSVLAALKDSLFRLGLSSVELYQLHW---AGIWGNEGFIDGLGDAVEQ-GL----VKAVGVSNYSEKRLRNAY----E 210 (280)
Q Consensus 143 ~~~~i~~~l~~sl~~Lg~d~iDl~~lH~---pd~~~~~~~~~~L~~lk~~-G~----ir~iGvS~~~~~~i~~~~----~ 210 (280)
-...+++..+...++|+....++.+--. +..+-...+-+.|++|.++ |. |-.+||..-..|.+.++- +
T Consensus 195 Y~~q~~~t~~~v~~~l~~~~~~l~yQSr~~g~~~WL~P~t~d~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e 274 (311)
T PRK12435 195 YPDQLEETADLIAEQANVEHYAIGWQSEGNTPDPWLGPDVQDLTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKV 274 (311)
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEeeecCCCCCCCCCCCCHHHHHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHH
Confidence 3556777777777888876444444322 2334456778899999887 73 233455444444444332 3
Q ss_pred HHHhcCCC
Q 023606 211 KLKKRGIP 218 (280)
Q Consensus 211 ~~~~~~~~ 218 (280)
.+...|+.
T Consensus 275 ~a~~~G~~ 282 (311)
T PRK12435 275 VTDEIGAK 282 (311)
T ss_pred HHHHcCCc
Confidence 34444544
No 398
>PLN02428 lipoic acid synthase
Probab=22.72 E-value=6.3e+02 Score=23.56 Aligned_cols=165 Identities=15% Similarity=0.195 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcc-c---ccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTA-E---VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA-~---~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i 147 (280)
.+.++..++.+.+.+.|++++=-. . .|.++. -..+.+.++...... -.+.|..=.. ....+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~g-------a~~~~elir~Ir~~~--P~i~Ie~L~p--df~~d---- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGG-------SGHFAETVRRLKQLK--PEILVEALVP--DFRGD---- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCccc-------HHHHHHHHHHHHHhC--CCcEEEEeCc--cccCC----
Confidence 345666678888888898865422 1 233322 224444454443211 1333333221 01112
Q ss_pred HHHHHHHHHHhCCCcccEEEEecCCC------------CCchhHHHHHHHHHHc--Cccc-E---EEecCccHHHHHHHH
Q 023606 148 LAALKDSLFRLGLSSVELYQLHWAGI------------WGNEGFIDGLGDAVEQ--GLVK-A---VGVSNYSEKRLRNAY 209 (280)
Q Consensus 148 ~~~l~~sl~~Lg~d~iDl~~lH~pd~------------~~~~~~~~~L~~lk~~--G~ir-~---iGvS~~~~~~i~~~~ 209 (280)
++.|+.|.-.-+|.+ -|+++. ..-++.++.|+.+++. |..- . +|+ +=+.+.+.+.+
T Consensus 195 ----~elL~~L~eAG~d~i-~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l 268 (349)
T PLN02428 195 ----LGAVETVATSGLDVF-AHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTM 268 (349)
T ss_pred ----HHHHHHHHHcCCCEE-ccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHH
Confidence 223333322225553 365553 1246788999999988 7653 3 345 33678888888
Q ss_pred HHHHhcCCCEEEE-cc--------cCCccCCCcchhhHHHHHHHcCCeEEEcccCcC
Q 023606 210 EKLKKRGIPLASN-QV--------NYSLIYRKPEENGVKAACDELGITLIAYCPIAQ 257 (280)
Q Consensus 210 ~~~~~~~~~~~~~-q~--------~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~ 257 (280)
+.+...++.+..+ |. +.+-+....+-..+-+++.+.|...++.+||-+
T Consensus 269 ~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 269 EDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 8777666443322 21 222222222222577788899999999999864
No 399
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=22.71 E-value=5.5e+02 Score=22.83 Aligned_cols=132 Identities=21% Similarity=0.164 Sum_probs=67.9
Q ss_pred CCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEE
Q 023606 87 NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELY 166 (280)
Q Consensus 87 ~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~ 166 (280)
.|+..||-...... -+.-..++++...+ +-.=+||.||- .-.+.+++.-++.|.-|+.
T Consensus 36 ngihIIDL~kT~~~---------l~~A~~~v~~~~~~-~g~ILfVgTK~----------~a~~~V~~~A~r~g~~yV~-- 93 (252)
T COG0052 36 NGIHIIDLQKTLER---------LREAYKFLRRIAAN-GGKILFVGTKK----------QAQEPVKEFAERTGAYYVN-- 93 (252)
T ss_pred CCcEEEEHHHHHHH---------HHHHHHHHHHHHcC-CCEEEEEechH----------HHHHHHHHHHHHhCCceec--
Confidence 78888884433322 22233444444322 13568899995 2467788888888877666
Q ss_pred EEecCCC--CCc----hhHHHHH---HHHHHcCcccEEEecCccHHHHHHHHHHHHh-----cCCC-----EEEEcccCC
Q 023606 167 QLHWAGI--WGN----EGFIDGL---GDAVEQGLVKAVGVSNYSEKRLRNAYEKLKK-----RGIP-----LASNQVNYS 227 (280)
Q Consensus 167 ~lH~pd~--~~~----~~~~~~L---~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~-----~~~~-----~~~~q~~~n 227 (280)
|+.-. ..+ ...++-| +.+-++| ++..+-.....+.+-..+ .|++ |+++-
T Consensus 94 --~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~------~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~---- 161 (252)
T COG0052 94 --GRWLGGMLTNFKTIRKSIKRLKELEKMEEDG------FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLF---- 161 (252)
T ss_pred --CcccCccccCchhHHHHHHHHHHHHHHhhcc------cccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEE----
Confidence 33221 222 2223333 3344444 333333222222111111 1232 55431
Q ss_pred ccCCCcchhhHHHHHHHcCCeEEEcc
Q 023606 228 LIYRKPEENGVKAACDELGITLIAYC 253 (280)
Q Consensus 228 ~~~~~~~~~~l~~~~~~~gi~i~a~s 253 (280)
+.|+..+. ..+..|++.||+|+|..
T Consensus 162 ViDp~~e~-iAv~EA~klgIPVvAlv 186 (252)
T COG0052 162 VIDPRKEK-IAVKEANKLGIPVVALV 186 (252)
T ss_pred EeCCcHhH-HHHHHHHHcCCCEEEEe
Confidence 24555554 57889999999999864
No 400
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.71 E-value=3e+02 Score=23.70 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=16.4
Q ss_pred hHHHHHHHcCCeEEEccc
Q 023606 237 GVKAACDELGITLIAYCP 254 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~sp 254 (280)
++++.++++|+.+.+|..
T Consensus 203 ~~v~~~~~~G~~v~vWTV 220 (249)
T cd08561 203 RFVRAAHAAGLEVHVWTV 220 (249)
T ss_pred HHHHHHHHCCCEEEEEec
Confidence 689999999999999974
No 401
>PRK10060 RNase II stability modulator; Provisional
Probab=22.64 E-value=5.3e+02 Score=25.98 Aligned_cols=114 Identities=18% Similarity=0.276 Sum_probs=70.4
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC---CCchhHHHHHHHHHHcCcccEEEecCcc--H
Q 023606 128 EVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYS--E 202 (280)
Q Consensus 128 ~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~---~~~~~~~~~L~~lk~~G~ir~iGvS~~~--~ 202 (280)
.+.|+.-+.. ..+....+...+...+++.++. ...+.+--.+. .+.+.+.+.+.+|++.|- .|.+.+|. .
T Consensus 492 ~~~i~vNls~--~~l~~~~~~~~l~~~l~~~~~~-~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ 566 (663)
T PRK10060 492 NLRVAVNVSA--RQLADQTIFTALKQALQELNFE-YCPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGY 566 (663)
T ss_pred CeEEEEEcCH--HHhCCCcHHHHHHHHHHHHCcC-cceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCch
Confidence 4445555543 2333345777888888888764 34444443333 345678889999999995 56666663 3
Q ss_pred HHHHHHHHHHHhcCCCEEEEcccCCccCC---Ccch----hhHHHHHHHcCCeEEEc
Q 023606 203 KRLRNAYEKLKKRGIPLASNQVNYSLIYR---KPEE----NGVKAACDELGITLIAY 252 (280)
Q Consensus 203 ~~i~~~~~~~~~~~~~~~~~q~~~n~~~~---~~~~----~~l~~~~~~~gi~i~a~ 252 (280)
..+..+.. ++++.+.+.-+++.. +... ..++..|++.|+.+++=
T Consensus 567 ssl~~L~~------l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe 617 (663)
T PRK10060 567 SSLSQLAR------FPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE 617 (663)
T ss_pred hhHHHHHh------CCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe
Confidence 44444433 477777776655432 1111 24788999999999875
No 402
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=22.61 E-value=4.7e+02 Score=21.99 Aligned_cols=67 Identities=4% Similarity=0.061 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhC---C----CcccEEEEecCCCCCchhHHHHHHHHHHcCc-ccEEEecCc--cHHHHHHHHHHHH
Q 023606 146 SVLAALKDSLFRLG---L----SSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVSNY--SEKRLRNAYEKLK 213 (280)
Q Consensus 146 ~i~~~l~~sl~~Lg---~----d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~-ir~iGvS~~--~~~~i~~~~~~~~ 213 (280)
.+.++++.++..|. . ..| ++++-.+...+..++.+..++|+++|. |.-||+.+. +.+.++.+.+...
T Consensus 86 ~l~~AL~~A~~~L~~~~~~~~~~ri-vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~ 162 (187)
T cd01452 86 NFITGIQIAQLALKHRQNKNQKQRI-VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN 162 (187)
T ss_pred hHHHHHHHHHHHHhcCCCcCCcceE-EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc
Confidence 36667777776662 1 122 556665544455667788889998886 567777654 6788888877754
No 403
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=22.54 E-value=1.9e+02 Score=26.48 Aligned_cols=52 Identities=17% Similarity=0.366 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcccCCc------c--C--CCcchhhHHHHHHHcCCeEEEc
Q 023606 201 SEKRLRNAYEKLKKRGIPLASNQVNYSL------I--Y--RKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~------~--~--~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
+.+.++++++..++.+++++++.+...- + + +-++-.++++.++++|+.++.+
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~ 83 (339)
T cd06604 22 PEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTI 83 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEE
Confidence 4455666666666666666665554221 1 1 1112236888888888888765
No 404
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=22.53 E-value=3.5e+02 Score=22.94 Aligned_cols=106 Identities=13% Similarity=0.138 Sum_probs=53.3
Q ss_pred HHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCC-CCCCCH-------HHHHHHH
Q 023606 80 AFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAAL-PWRLGR-------QSVLAAL 151 (280)
Q Consensus 80 ~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~-~~~~~~-------~~i~~~l 151 (280)
++++|++.|...+--....-. ...+...++++. -.+++..--+.. ....+. +.+.+.+
T Consensus 84 v~~~aL~~g~~~ind~~~~~~---------~~~~~~l~a~~~-----~~vV~m~~~~~~~~~~~~~~~~~~~~~~i~~~~ 149 (210)
T PF00809_consen 84 VAEAALKAGADIINDISGFED---------DPEMLPLAAEYG-----APVVLMHSDGNPKGMPETADYRLDIAEEIIEFL 149 (210)
T ss_dssp HHHHHHHHTSSEEEETTTTSS---------STTHHHHHHHHT-----SEEEEESESSETTTTTSSHHHSHSHHHHHHHHH
T ss_pred HHHHHHHcCcceEEecccccc---------cchhhhhhhcCC-----CEEEEEecccccccccccchhhhhHHHHHHHHH
Confidence 556677778876554333221 233446666665 344444443211 111112 2233333
Q ss_pred HH---HHHHhCCCcccEEEEecCCC-C---CchhHHHHHHHHHHc-CcccEEEecC
Q 023606 152 KD---SLFRLGLSSVELYQLHWAGI-W---GNEGFIDGLGDAVEQ-GLVKAVGVSN 199 (280)
Q Consensus 152 ~~---sl~~Lg~d~iDl~~lH~pd~-~---~~~~~~~~L~~lk~~-G~ir~iGvS~ 199 (280)
++ .|++.|++.=|+++==...+ . ...++++.++.+++. |...-+|.|.
T Consensus 150 ~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~~~~~~~~~p~l~~~sr 205 (210)
T PF00809_consen 150 EERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIEELKELFGYPILVGGSR 205 (210)
T ss_dssp HHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHHHHHTTSSSEBEEEETT
T ss_pred HHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 33 23346886656554211121 1 134677888888888 8888898886
No 405
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=22.35 E-value=2.2e+02 Score=22.08 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHCCCCeEE
Q 023606 75 KAAKAAFDTSLDNGITFFD 93 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~D 93 (280)
.|...+-+.|.+.|+...+
T Consensus 19 ~Q~~~~~~~a~~~g~~i~~ 37 (148)
T smart00857 19 RQLEALRAYAKANGWEVVR 37 (148)
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 5666677778888887554
No 406
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=22.33 E-value=3.6e+02 Score=25.94 Aligned_cols=52 Identities=13% Similarity=-0.029 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 200 YSEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 200 ~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
++.+++.++++.+++.++.+.+.-+---+.+...+-.+.++++.+.++..+.
T Consensus 320 ~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~ 371 (472)
T TIGR03471 320 LTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQ 371 (472)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3456777778888877765444322211222222223578888888755433
No 407
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=22.24 E-value=2.3e+02 Score=24.84 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=16.0
Q ss_pred hHHHHHHHcCCeEEEccc
Q 023606 237 GVKAACDELGITLIAYCP 254 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~sp 254 (280)
.+++.++++|+.+.+|..
T Consensus 219 ~~v~~~~~~G~~v~vWTV 236 (258)
T cd08573 219 AYVRYWRARGIRVIAWTV 236 (258)
T ss_pred HHHHHHHHCCCEEEEEec
Confidence 589999999999999965
No 408
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=22.21 E-value=1.8e+02 Score=27.53 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHcC-cccEEEecCc---cHHHHHHHHHHHHhcCC--CEEEEcccCCccCCCcchhhHHHHHHHcCCeEE
Q 023606 177 EGFIDGLGDAVEQG-LVKAVGVSNY---SEKRLRNAYEKLKKRGI--PLASNQVNYSLIYRKPEENGVKAACDELGITLI 250 (280)
Q Consensus 177 ~~~~~~L~~lk~~G-~ir~iGvS~~---~~~~i~~~~~~~~~~~~--~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~ 250 (280)
..+++.+..|..+| .|.++.|-.. +.++++++++- +.+ .+..+.++.-.+. +-. ++-+.|+++|+.+.
T Consensus 102 ~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~---~T~LVSim~aNnE~G~IQ--pI~-ei~~i~k~~~i~fH 175 (386)
T COG1104 102 PAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRP---DTILVSIMHANNETGTIQ--PIA-EIGEICKERGILFH 175 (386)
T ss_pred HHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCC---CceEEEEEecccCeeecc--cHH-HHHHHHHHcCCeEE
Confidence 34555555554555 3556655543 44555555431 111 1111112211111 111 46666777766665
Q ss_pred EcccCcCCCC
Q 023606 251 AYCPIAQGSK 260 (280)
Q Consensus 251 a~spl~~G~L 260 (280)
.=..-+-|++
T Consensus 176 vDAvQa~Gki 185 (386)
T COG1104 176 VDAVQAVGKI 185 (386)
T ss_pred EehhhhcCce
Confidence 5555555544
No 409
>PLN02231 alanine transaminase
Probab=22.16 E-value=7.6e+02 Score=24.30 Aligned_cols=82 Identities=24% Similarity=0.368 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHcC-cccEEEecC--------ccHHHHHHHHHHHHhcCCCEEEEcccCCccC-CCcchhhHHHHHHH---
Q 023606 178 GFIDGLGDAVEQG-LVKAVGVSN--------YSEKRLRNAYEKLKKRGIPLASNQVNYSLIY-RKPEENGVKAACDE--- 244 (280)
Q Consensus 178 ~~~~~L~~lk~~G-~ir~iGvS~--------~~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~-~~~~~~~l~~~~~~--- 244 (280)
++-+.+++.+.+| ++|.|=++| ++.+.++++++.+++.++-+....+...+.. .......+.+...+
T Consensus 257 ~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~ 336 (534)
T PLN02231 257 ELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGY 336 (534)
T ss_pred HHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhcc
Confidence 3333333334444 566655554 3558888888888777765555544443322 11111124444432
Q ss_pred --cCCeEEEcccCcCCC
Q 023606 245 --LGITLIAYCPIAQGS 259 (280)
Q Consensus 245 --~gi~i~a~spl~~G~ 259 (280)
.++.++....|..++
T Consensus 337 ~~~~~~vi~l~S~SK~~ 353 (534)
T PLN02231 337 GEKDISLVSFQSVSKGY 353 (534)
T ss_pred ccCCceEEEEeccCccc
Confidence 244566666666654
No 410
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=22.15 E-value=5.8e+02 Score=22.92 Aligned_cols=87 Identities=11% Similarity=-0.013 Sum_probs=57.2
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCC-------------CCc
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGI-------------WGN 176 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~-------------~~~ 176 (280)
-..+-+..+.++. ++=+|+..-...+....+.+.|++-..+.+..|-..+++++.+.+-.. .|.
T Consensus 18 LsVlrei~~~LP~---e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~~~iPV 94 (269)
T COG0796 18 LSVLREIRRQLPD---EDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASAVALEDLREKFDIPV 94 (269)
T ss_pred HHHHHHHHHHCCC---CcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCE
Confidence 5667666677763 355666665544445688899999999999999888899999987432 233
Q ss_pred hhHHHHHHHHHHcCcccEEEecC
Q 023606 177 EGFIDGLGDAVEQGLVKAVGVSN 199 (280)
Q Consensus 177 ~~~~~~L~~lk~~G~ir~iGvS~ 199 (280)
-++.-+.....+..+=+.|||-.
T Consensus 95 vGviPaik~A~~~t~~~~IgVia 117 (269)
T COG0796 95 VGVIPAIKPAVALTRNGRIGVIA 117 (269)
T ss_pred EEeccchHHHHHhccCCeEEEEe
Confidence 34444445555554445666543
No 411
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=22.14 E-value=1.2e+02 Score=26.21 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=23.7
Q ss_pred cccEEEEecCCCCCchhHHHHHHHHHHc---CcccEEEecCc
Q 023606 162 SVELYQLHWAGIWGNEGFIDGLGDAVEQ---GLVKAVGVSNY 200 (280)
Q Consensus 162 ~iDl~~lH~pd~~~~~~~~~~L~~lk~~---G~ir~iGvS~~ 200 (280)
.+|++|||..+ -.+.+++|+++ ..++.+.++.-
T Consensus 75 ~ld~VQlHG~e------~~~~~~~l~~~~~~~v~kai~v~~~ 110 (208)
T COG0135 75 GLDAVQLHGDE------DPEYIDQLKEELGVPVIKAISVSEE 110 (208)
T ss_pred CCCEEEECCCC------CHHHHHHHHhhcCCceEEEEEeCCc
Confidence 47999999864 34555556654 57899998864
No 412
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.11 E-value=6.9e+02 Score=23.78 Aligned_cols=27 Identities=11% Similarity=-0.054 Sum_probs=15.5
Q ss_pred CCCcchhhHHHHHHHcCCeEEEcccCc
Q 023606 230 YRKPEENGVKAACDELGITLIAYCPIA 256 (280)
Q Consensus 230 ~~~~~~~~l~~~~~~~gi~i~a~spl~ 256 (280)
+...+...+++++++.++.-+.-.|+.
T Consensus 180 ND~eel~~ti~~L~~lg~~~V~L~~y~ 206 (404)
T TIGR03278 180 NDGDVLWKTCADLESWGAKALILMRFA 206 (404)
T ss_pred cCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 333444567788888776544444443
No 413
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=22.08 E-value=6.1e+02 Score=23.14 Aligned_cols=137 Identities=16% Similarity=0.094 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHC-CCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 73 KMKAAKAAFDTSLDN-GITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
+.++..++++..-+. |++.+--+- |.... .++..+-+.+.....-..=+.+-|.||+. ...+..+.+.+
T Consensus 126 ~~~~~~~~i~~i~~~~~i~~VvltG--GEPL~----~~d~~L~~ll~~l~~i~~~~~iri~tr~~----~~~p~rit~el 195 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPEINEVILSG--GDPLM----AKDHRLDWLLNLLEQIPHLKRLRIHTRLP----VVIPDRITSGL 195 (321)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeC--ccccc----CCchHHHHHHHHHHhCCCCcEEEEecCcc----eeeHHHhhHHH
Confidence 345666666655533 787554322 32211 11333444443322110124677888763 34444565555
Q ss_pred HHHHHHhCCCcccEEEEecCCC-CCchhHHHHHHHHHHcCcccEEE-ec----CccHHHHHHHHHHHHhcCCCEEE
Q 023606 152 KDSLFRLGLSSVELYQLHWAGI-WGNEGFIDGLGDAVEQGLVKAVG-VS----NYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~-~~~~~~~~~L~~lk~~G~ir~iG-vS----~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
-+.|++.|.+.+ +.+|-..+ .-.+++.++++.|++.|..-.+= +- |.+.+.+.++.+.+...++.+-+
T Consensus 196 ~~~L~~~~~~~~--~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyy 269 (321)
T TIGR03821 196 CDLLANSRLQTV--LVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYY 269 (321)
T ss_pred HHHHHhcCCcEE--EEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCc
Confidence 556666664332 23465322 33577999999999999632111 11 23778899998887777765433
No 414
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=22.08 E-value=5.9e+02 Score=22.99 Aligned_cols=128 Identities=14% Similarity=0.163 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHCCCCeEEcc--c-------ccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCC
Q 023606 73 KMKAAKAAFDTSLDNGITFFDTA--E-------VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLG 143 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~Gin~~DTA--~-------~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~ 143 (280)
++++..+..+.+.+.|+..||-- . .|+ |.. ...--+.+.+.++.... +-++-|+.|+... ++.+
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~-Gs~--l~~~~~~~~ei~~~vr~---~~~~pv~vKir~g-~~~~ 145 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA-GSA--LLRDPDLIGKIVKAVVD---AVDIPVTVKIRIG-WDDA 145 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc-cch--HhCCHHHHHHHHHHHHh---hcCCCEEEEEEcc-cCCC
Confidence 44777788888888999988852 1 121 100 00013455555555431 1235677776321 1111
Q ss_pred HHHHHHHHHHHHHHhCCCcccEEEEecCCC---CCchhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHH
Q 023606 144 RQSVLAALKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (280)
Q Consensus 144 ~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~---~~~~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~ 211 (280)
...+ ..+-+.|+..|+ |.+.+|.... ......|+.+.++++.=.|.-|+..+. +++.++++++.
T Consensus 146 ~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~ 213 (319)
T TIGR00737 146 HINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLET 213 (319)
T ss_pred cchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHh
Confidence 1112 233344566675 5556675322 222345888888888766888888887 68888888754
No 415
>PRK11059 regulatory protein CsrD; Provisional
Probab=22.07 E-value=2.6e+02 Score=28.05 Aligned_cols=70 Identities=14% Similarity=0.099 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHcCcccEEEecCcc--HHHHHHHHHHHHhcCCCEEEEcccCCccC---CCcch----hhHHHHHHHcC
Q 023606 176 NEGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIY---RKPEE----NGVKAACDELG 246 (280)
Q Consensus 176 ~~~~~~~L~~lk~~G~ir~iGvS~~~--~~~i~~~~~~~~~~~~~~~~~q~~~n~~~---~~~~~----~~l~~~~~~~g 246 (280)
.+.+...++.|++.|- .+++.+|. ...+..+.+ ++++++.+.-+++. .+.+. ..+++.|+..|
T Consensus 532 ~~~~~~~l~~L~~~G~--~iaiddfG~g~~s~~~L~~------l~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~ 603 (640)
T PRK11059 532 ISRLRPVLRMLRGLGC--RLAVDQAGLTVVSTSYIKE------LNVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTE 603 (640)
T ss_pred HHHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHHh------CCCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCC
Confidence 3456677777777775 34444432 122222211 36666666555432 12221 25789999999
Q ss_pred CeEEEcc
Q 023606 247 ITLIAYC 253 (280)
Q Consensus 247 i~i~a~s 253 (280)
+.++|-.
T Consensus 604 i~viAeg 610 (640)
T PRK11059 604 TQVFATG 610 (640)
T ss_pred CeEEEEE
Confidence 9999853
No 416
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=22.01 E-value=6.5e+02 Score=23.43 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=21.9
Q ss_pred CEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEcccCcCC
Q 023606 218 PLASNQVNYSLIYRKPEENGVKAACDELGITLIAYCPIAQG 258 (280)
Q Consensus 218 ~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~spl~~G 258 (280)
+..++..+.|+.-...+-..+.+.|+++|+.++.=...+.+
T Consensus 148 klV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~ 188 (388)
T PRK07811 148 KLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASP 188 (388)
T ss_pred eEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 44545555555332223335666777777766655555444
No 417
>PLN02591 tryptophan synthase
Probab=22.00 E-value=5.5e+02 Score=22.62 Aligned_cols=128 Identities=11% Similarity=0.079 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCC---chhhHHHH---------HHHHhcccCCCCCcEEEEecCCCCC
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGA---INSETLLG---------RFIKERKQRDPEVEVTVATKFAALP 139 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~---~~sE~~lG---------~aL~~~~~~~~R~~~~I~tK~~~~~ 139 (280)
.+.+...++++.-.+.|++.++-.-.|.++-+-|+ ..+++.+. +.+++...+ ..-.+++.|=.
T Consensus 13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~ilm~Y~---- 87 (250)
T PLN02591 13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIVLFTYY---- 87 (250)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEecc----
Confidence 35578888999999999999998777766544333 13333333 222222100 00112222211
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHH
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~ 211 (280)
++ -+...+++-++++.---+|=+++-+ .+.++.-+..+.+++.|.-.-.=++.. +.++++++.+.
T Consensus 88 ---N~-i~~~G~~~F~~~~~~aGv~GviipD---LP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~ 153 (250)
T PLN02591 88 ---NP-ILKRGIDKFMATIKEAGVHGLVVPD---LPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEA 153 (250)
T ss_pred ---cH-HHHhHHHHHHHHHHHcCCCEEEeCC---CCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHh
Confidence 11 0122344444333222245555553 345677777777788876544444333 45677777665
No 418
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=21.86 E-value=6.1e+02 Score=24.95 Aligned_cols=116 Identities=12% Similarity=0.086 Sum_probs=62.4
Q ss_pred EcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCC-CcccEEEEecC
Q 023606 93 DTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGL-SSVELYQLHWA 171 (280)
Q Consensus 93 DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~-d~iDl~~lH~p 171 (280)
+.+..||. ++.|-++|++.....+.+=++|+|=+- ...-.|.+..-+++..+.... +-+++..+|.|
T Consensus 119 E~~aVfGG---------~~~L~e~I~~~~~~y~P~~I~V~tTC~---~evIGDDi~a~i~~~~~~~~~p~~~pVi~v~Tp 186 (515)
T TIGR01286 119 EDAAVFGG---------LKNMVDGLQNCYALYKPKMIAVSTTCM---AEVIGDDLNAFIGNAKKEGFIPDDFPVPFAHTP 186 (515)
T ss_pred CCceeeCc---------HHHHHHHHHHHHHhcCCCEEEEeCCcH---HHHhhccHHHHHHHHHHhcCCCCCCceEEeeCC
Confidence 34457776 888888888765432345566766653 123333444444444444332 24689999999
Q ss_pred CCCC-----chhHHHHHH-HHH----------HcCcccEEE-ecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 172 GIWG-----NEGFIDGLG-DAV----------EQGLVKAVG-VSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 172 d~~~-----~~~~~~~L~-~lk----------~~G~ir~iG-vS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
+... -+.+++++- .+. ..++|--|| +..+ +..++++.+..+..|+++.+
T Consensus 187 gF~Gs~~~Gyd~a~~ail~~l~~~~~~~~~~~~~~~VNii~g~~~~-~gd~~eikrlL~~~Gi~~~~ 252 (515)
T TIGR01286 187 SFVGSHITGYDNMFKGILEYFTKGSMDDKVVGSNGKINIIPGFETY-IGNFREIKRILSLMGVGYTL 252 (515)
T ss_pred CCcccHHHHHHHHHHHHHHHHhhcccccccCCCCCeEEEECCCCCC-chhHHHHHHHHHHcCCCeEE
Confidence 8733 122333322 222 135677774 4333 44455555555566666554
No 419
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=21.81 E-value=5.8e+02 Score=22.82 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHCC-----CCeEEcccccCC
Q 023606 73 KMKAAKAAFDTSLDNG-----ITFFDTAEVYGS 100 (280)
Q Consensus 73 ~~~~~~~~l~~A~~~G-----in~~DTA~~Yg~ 100 (280)
+.++..++++.-.+.| ++.|+.. .+.+
T Consensus 19 ~~~~Kv~i~~~L~~~G~~~~~v~~IE~~-s~~~ 50 (279)
T cd07947 19 TVEQIVKIYDYLHELGGGSGVIRQTEFF-LYTE 50 (279)
T ss_pred CHHHHHHHHHHHHHcCCCCCccceEEec-CcCh
Confidence 3467778999989999 9999974 4444
No 420
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=21.80 E-value=4.3e+02 Score=21.24 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=8.0
Q ss_pred CCchhHHHHHHHHHHc
Q 023606 174 WGNEGFIDGLGDAVEQ 189 (280)
Q Consensus 174 ~~~~~~~~~L~~lk~~ 189 (280)
...+++++.|.++.++
T Consensus 180 ~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 180 QGIDELRAAIAKWLAE 195 (196)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3445555555555444
No 421
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=21.67 E-value=4e+02 Score=20.91 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=40.9
Q ss_pred CCcEEEEecCCCC----CCCCCHHHHHHHHHHHHHHhC--CCcccEEEEec--CCCCCchhHHHHHHHHHHcC
Q 023606 126 EVEVTVATKFAAL----PWRLGRQSVLAALKDSLFRLG--LSSVELYQLHW--AGIWGNEGFIDGLGDAVEQG 190 (280)
Q Consensus 126 R~~~~I~tK~~~~----~~~~~~~~i~~~l~~sl~~Lg--~d~iDl~~lH~--pd~~~~~~~~~~L~~lk~~G 190 (280)
...++++...-+. ..+.-.+.+.+..+...++|+ .+.+.+.+.-. |..+-...+-++|++|.++|
T Consensus 18 ~~~llfsaHgiP~~~~~~gd~Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G 90 (135)
T cd00419 18 KDRLLFSAHGLPVRDIKKGDPYPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEG 90 (135)
T ss_pred CCEEEEEcCCCHHHHhhCCCCHHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 3556666665331 112335678888888888998 44455555532 33344567889999999998
No 422
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=21.63 E-value=1.4e+02 Score=26.84 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccH-----HHHHHHHHHHHh
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSE-----KRLRNAYEKLKK 214 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~-----~~i~~~~~~~~~ 214 (280)
+...-+-+.+..++.|-...- ..=+.=+.--| |....-..|++||+.| +-||.||+. -++++.++.
T Consensus 61 ygnaN~iv~em~~eiLp~v~~-tPViaGv~atD--P~~~~~~fl~~lk~~G---f~GV~NfPTvgliDG~fR~~LEe--- 131 (268)
T PF09370_consen 61 YGNANEIVMEMAREILPVVKD-TPVIAGVCATD--PFRDMDRFLDELKELG---FSGVQNFPTVGLIDGQFRQNLEE--- 131 (268)
T ss_dssp EEEHHHHHHHHHHHHGGG-SS-S-EEEEE-TT---TT--HHHHHHHHHHHT----SEEEE-S-GGG--HHHHHHHHH---
T ss_pred ccCHhHHHHHHHHhhhhhccC-CCEEEEecCcC--CCCcHHHHHHHHHHhC---CceEEECCcceeeccHHHHHHHh---
Confidence 333344455555666666541 11122222222 3457778889999988 779999864 334444332
Q ss_pred cCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEEc
Q 023606 215 RGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 215 ~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a~ 252 (280)
.+.-+ . .+.+++..|+++|+-.++|
T Consensus 132 ~Gmgy------------~-~EVemi~~A~~~gl~T~~y 156 (268)
T PF09370_consen 132 TGMGY------------D-REVEMIRKAHEKGLFTTAY 156 (268)
T ss_dssp TT--H------------H-HHHHHHHHHHHTT-EE--E
T ss_pred cCCCH------------H-HHHHHHHHHHHCCCeeeee
Confidence 11100 0 1225777777777766655
No 423
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=21.56 E-value=4.2e+02 Score=22.91 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.9
Q ss_pred hHHHHHHHcCCeEEEcccCcCCC
Q 023606 237 GVKAACDELGITLIAYCPIAQGS 259 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~spl~~G~ 259 (280)
.|-.+|++++|+|++-+.|.+..
T Consensus 161 ~Lk~lA~~~~i~vi~~sQlnr~~ 183 (259)
T PF03796_consen 161 ELKALAKELNIPVIALSQLNREA 183 (259)
T ss_dssp HHHHHHHHHTSEEEEEEEBSGGG
T ss_pred HHHHHHHHcCCeEEEccccChhh
Confidence 47789999999999999998764
No 424
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=21.55 E-value=5.4e+02 Score=23.08 Aligned_cols=103 Identities=16% Similarity=0.043 Sum_probs=52.3
Q ss_pred HHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCc-ccEEEec-----CccHHHHHHHHHHHHhcCC--CEEEE
Q 023606 151 LKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL-VKAVGVS-----NYSEKRLRNAYEKLKKRGI--PLASN 222 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~-ir~iGvS-----~~~~~~i~~~~~~~~~~~~--~~~~~ 222 (280)
+...+.-+..+.-|.+++..|.. ..+.+. ++..|. +..+-+. ..+.+.+++.++.....+. ++.++
T Consensus 81 ~~~~~~~~~~~~~~~vlv~~P~y---~~~~~~---~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~ 154 (363)
T PF00155_consen 81 LFLLLRLLKINPGDTVLVPDPCY---PSYIEA---ARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLI 154 (363)
T ss_dssp HHHHHHHHHSSTTSEEEEEESSS---THHHHH---HHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEE
T ss_pred hhhhhhcccccccccceecCCcc---cccccc---ccccCceeeeccccccccccccccccccccccccccccccceeee
Confidence 33333333234457788877754 222222 223332 4444443 4577888877665322222 34455
Q ss_pred cccCCccCCCc---chhhHHHHHHHcCCeEEEcccCcCCC
Q 023606 223 QVNYSLIYRKP---EENGVKAACDELGITLIAYCPIAQGS 259 (280)
Q Consensus 223 q~~~n~~~~~~---~~~~l~~~~~~~gi~i~a~spl~~G~ 259 (280)
-.++|+--.-. +..+++++|+++++-++.=.......
T Consensus 155 ~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~ 194 (363)
T PF00155_consen 155 CNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLI 194 (363)
T ss_dssp ESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGB
T ss_pred cccccccccccccccccchhhhhcccccceeeeeceeccc
Confidence 55555533221 12356777888888887654444333
No 425
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.54 E-value=2.9e+02 Score=26.53 Aligned_cols=73 Identities=15% Similarity=0.194 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCccc-----EEEecCccH------HHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCe
Q 023606 180 IDGLGDAVEQGLVK-----AVGVSNYSE------KRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGIT 248 (280)
Q Consensus 180 ~~~L~~lk~~G~ir-----~iGvS~~~~------~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~ 248 (280)
++.|.+|.++|+|. ++++.+... ..-.++.+.++..++.-.+.-..+-.+++-... +.....+.||+
T Consensus 289 lD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~--m~keiE~~GiP 366 (431)
T TIGR01918 289 VDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGAT--MVKEIERAGIP 366 (431)
T ss_pred HHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHH--HHHHHHHcCCC
Confidence 78899999999995 556544321 333355555555666554444455555554432 67788889999
Q ss_pred EEEccc
Q 023606 249 LIAYCP 254 (280)
Q Consensus 249 i~a~sp 254 (280)
++-+..
T Consensus 367 vv~~~~ 372 (431)
T TIGR01918 367 VVHMCT 372 (431)
T ss_pred EEEEee
Confidence 988765
No 426
>TIGR00035 asp_race aspartate racemase.
Probab=21.53 E-value=4e+02 Score=22.80 Aligned_cols=62 Identities=6% Similarity=-0.092 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC-------------chhHHHHHHHHHHcCcccEEEecCccHHH
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG-------------NEGFIDGLGDAVEQGLVKAVGVSNYSEKR 204 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~-------------~~~~~~~L~~lk~~G~ir~iGvS~~~~~~ 204 (280)
-+.+.+++-++..-.+.+-++++++.+++|+..+ ...+.+.++.|.+.| +..|-++..+...
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 4455666666676677888999999999886411 224555666666655 7888888776544
No 427
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=21.51 E-value=7.4e+02 Score=23.89 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=64.3
Q ss_pred cccccCCCCCCCCchhhHHHHHHHHhcccCCC-CCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC---C--CcccEEE
Q 023606 94 TAEVYGSRASFGAINSETLLGRFIKERKQRDP-EVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG---L--SSVELYQ 167 (280)
Q Consensus 94 TA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~-R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg---~--d~iDl~~ 167 (280)
..-.||. |+.|-++|++.....+ .+-++|.|=+. ...-.|.+...+++.-++++ . ..+.++.
T Consensus 70 ~d~VfGg---------~~~L~~ai~~~~~~~~~p~~i~v~ttc~---~eiiGDDi~~v~~~~~~~~~~~~~p~~~~~ii~ 137 (461)
T TIGR02931 70 DGAVFGA---------LDRVEEAVDVLLTRYPDVKVVPIITTCS---TEIIGDDVDGLISKLNEELLKEKFPDREVHLIP 137 (461)
T ss_pred CceEECc---------HHHHHHHHHHHHHhcCCCCEEEEECCch---HHhhhcCHHHHHHHHHhhhcccccCCCCCeEEE
Confidence 3356776 8888899887654332 24455666553 23334445555555544442 1 1367899
Q ss_pred EecCCCCC--chhHHHHHHHHHH--------cCcccEEEecCccHHHHHHHHHHHHhcCCCEEE
Q 023606 168 LHWAGIWG--NEGFIDGLGDAVE--------QGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLAS 221 (280)
Q Consensus 168 lH~pd~~~--~~~~~~~L~~lk~--------~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~ 221 (280)
+|.|+... ..+...+++.+.+ +++|--||.. .++..++++.+..+..++++.+
T Consensus 138 v~tpgF~gs~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~-~~~~D~~elk~lL~~~Gl~v~~ 200 (461)
T TIGR02931 138 IHTPSFVGSMITGYDVAVHDFVKHFAKKDKPNDKINLITGW-VNPGDVKELKHLLEEMDIEANV 200 (461)
T ss_pred eeCCCCCCcHHHHHHHHHHHHHHHHccCCCCCCcEEEECCC-CChhhHHHHHHHHHHcCCceEE
Confidence 99888732 2333344433332 3667778754 3455555555556666666554
No 428
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=21.36 E-value=7.1e+02 Score=23.61 Aligned_cols=106 Identities=21% Similarity=0.114 Sum_probs=55.9
Q ss_pred hHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCC--chhHHHHHHHHH
Q 023606 110 ETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWG--NEGFIDGLGDAV 187 (280)
Q Consensus 110 E~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~--~~~~~~~L~~lk 187 (280)
|+.|-++|++.....+.+-++|.|=+.. ..-.+.+..-+++. +++ .++++.++.|+... ..+...+++.+.
T Consensus 71 ~~kL~~~I~~~~~~~~p~~I~V~ttC~~---~~IGdDi~~v~~~~-~~~---~~~vi~v~t~gf~g~~~~G~~~a~~al~ 143 (427)
T cd01971 71 EDRLRELIKSTLSIIDADLFVVLTGCIA---EIIGDDVGAVVSEF-QEG---GAPIVYLETGGFKGNNYAGHEIVLKAII 143 (427)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEcCCcH---HHhhcCHHHHHHHh-hhc---CCCEEEEECCCcCcccccHHHHHHHHHH
Confidence 8888888887543322455666666532 22223344444433 333 36899999988722 234333333332
Q ss_pred ----------HcCcccEEEecC-cc---HHHHHHHHHHHHhcCCCEEEE
Q 023606 188 ----------EQGLVKAVGVSN-YS---EKRLRNAYEKLKKRGIPLASN 222 (280)
Q Consensus 188 ----------~~G~ir~iGvS~-~~---~~~i~~~~~~~~~~~~~~~~~ 222 (280)
+.+.|--||..+ .+ ...++++.+..+..|+++.++
T Consensus 144 ~~~~~~~~~~~~~~VNiiG~~~~~~~~~~~d~~elk~lL~~~Gl~v~~~ 192 (427)
T cd01971 144 DQYVGQSEEKEPGLVNLWGPVPYQDPFWRGDLEEIKRVLEGIGLKVNIL 192 (427)
T ss_pred HHhccCCCCCCCCeEEEEeccCCccccccccHHHHHHHHHHCCCeEEEE
Confidence 234577888642 12 233444444455566666555
No 429
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=21.33 E-value=6.8e+02 Score=23.44 Aligned_cols=122 Identities=14% Similarity=0.078 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCC--CCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGS--RASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAAL 151 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~--g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l 151 (280)
-++..++++.|+++|+.-|=+...|.. ... +..+-+.++... +-+..|.+..-.. .....+.+.+.+
T Consensus 166 ~~~~~~l~~~al~~Ga~g~~~~~~y~~~~~~~------~~~l~~~~~~a~----~~g~~v~~H~e~~-~~~e~~av~~~~ 234 (415)
T cd01297 166 LAKMRELLREALEAGALGISTGLAYAPRLYAG------TAELVALARVAA----RYGGVYQTHVRYE-GDSILEALDELL 234 (415)
T ss_pred HHHHHHHHHHHHHCCCeEEEcccccCCcccCC------HHHHHHHHHHHH----HcCCEEEEEECcc-cccHHHHHHHHH
Confidence 356677888999999987766555643 333 777777777654 3456677666210 011223344444
Q ss_pred HHHHHHhCCCcccEEEEecCCC-----CCchhHHHHHHHHHHcCcccEEEecCcc---HHHHHHHHH
Q 023606 152 KDSLFRLGLSSVELYQLHWAGI-----WGNEGFIDGLGDAVEQGLVKAVGVSNYS---EKRLRNAYE 210 (280)
Q Consensus 152 ~~sl~~Lg~d~iDl~~lH~pd~-----~~~~~~~~~L~~lk~~G~ir~iGvS~~~---~~~i~~~~~ 210 (280)
+.+. +.|. -+.+.|--.. ....++++.+++++++|.=-...++.+. ...+.++++
T Consensus 235 ~~a~-~~g~---r~~i~H~ss~~~~~~~~~~~~l~~i~~a~~~G~~v~~e~~p~~~~~~~~~~~l~~ 297 (415)
T cd01297 235 RLGR-ETGR---PVHISHLKSAGAPNWGKIDRLLALIEAARAEGLQVTADVYPYGAGSEDDVRRIMA 297 (415)
T ss_pred HHHH-HhCC---CEEEEEEecCCCcccchHHHHHHHHHHHHHhCCcEEEEeCCCCCCcHHHHHHHHc
Confidence 3332 2343 3566675322 2245567777788888754444445442 344444443
No 430
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=21.25 E-value=4.8e+02 Score=21.59 Aligned_cols=107 Identities=10% Similarity=0.113 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCC--CCCC-CchhhHHHHHHHHhcccCC----CCCcEEEEecCCCCCCCCCHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSR--ASFG-AINSETLLGRFIKERKQRD----PEVEVTVATKFAALPWRLGRQS 146 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g--~~~~-~~~sE~~lG~aL~~~~~~~----~R~~~~I~tK~~~~~~~~~~~~ 146 (280)
+|....+++.+-+.-+..+-|++.+++- +.-+ .+..-..++..|+.-...+ ---+++|.+=. .-+
T Consensus 49 ee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~g~yDlviflG~--------~~y 120 (170)
T COG1880 49 EELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDGNGNYDLVIFLGS--------IYY 120 (170)
T ss_pred HHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCCCCCcceEEEEec--------cHH
Confidence 3455555555545569999999999841 1001 0122445556665532211 02244444332 223
Q ss_pred HHHHHHHHHHHh---CCCcccEEEEecCCC----CCchhHHHHHHHHHH
Q 023606 147 VLAALKDSLFRL---GLSSVELYQLHWAGI----WGNEGFIDGLGDAVE 188 (280)
Q Consensus 147 i~~~l~~sl~~L---g~d~iDl~~lH~pd~----~~~~~~~~~L~~lk~ 188 (280)
...++-.+|+.. .+=.||=++.-+.+. ...++.++.|++|.+
T Consensus 121 y~sq~Ls~lKhFs~i~tiaId~~Y~pnAd~SFpNl~kde~~~~L~ell~ 169 (170)
T COG1880 121 YLSQVLSGLKHFSNIKTIAIDRYYQPNADYSFPNLSKDEYLAYLDELLD 169 (170)
T ss_pred HHHHHHHHhhhhhcceEEEeccccCcCccccCCCcCHHHHHHHHHHHhc
Confidence 444555555544 333455555544443 346788888888864
No 431
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=21.22 E-value=3.8e+02 Score=25.44 Aligned_cols=85 Identities=19% Similarity=0.104 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCccchhhHHHHHHHHHHHHHCC-CCeEEccc-ccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEE
Q 023606 55 AWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNG-ITFFDTAE-VYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVA 132 (280)
Q Consensus 55 t~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~G-in~~DTA~-~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~ 132 (280)
|....+. +.+.++..++++...+.| +-+||.|+ -|++| -+.=..+|+...... .+++|+
T Consensus 181 cHNPTG~---------D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G--------leeDa~~lR~~a~~~--~~~lva 241 (396)
T COG1448 181 CHNPTGI---------DPTEEQWQELADLIKERGLIPFFDIAYQGFADG--------LEEDAYALRLFAEVG--PELLVA 241 (396)
T ss_pred CCCCCCC---------CCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc--------hHHHHHHHHHHHHhC--CcEEEE
Q ss_pred ecCCC---------------CCCCCCHHHHHHHHHHHHHHh
Q 023606 133 TKFAA---------------LPWRLGRQSVLAALKDSLFRL 158 (280)
Q Consensus 133 tK~~~---------------~~~~~~~~~i~~~l~~sl~~L 158 (280)
+-++. .......+.++.+++.+.|.+
T Consensus 242 ~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ 282 (396)
T COG1448 242 SSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTN 282 (396)
T ss_pred ehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhc
No 432
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=21.17 E-value=2e+02 Score=27.21 Aligned_cols=104 Identities=12% Similarity=0.012 Sum_probs=52.6
Q ss_pred eEEcccccCCCCCCCC-chhhHHHHHHHHhcccCCCCCcEEEEecCCCC---------CCCCCHH----HHHHHHHHHHH
Q 023606 91 FFDTAEVYGSRASFGA-INSETLLGRFIKERKQRDPEVEVTVATKFAAL---------PWRLGRQ----SVLAALKDSLF 156 (280)
Q Consensus 91 ~~DTA~~Yg~g~~~~~-~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~---------~~~~~~~----~i~~~l~~sl~ 156 (280)
+|=|+..|.||.- |. |.+.-+.+..+++...-. -.+++..|=.-.. ....++. .....+++.++
T Consensus 2 ~ITt~~pY~Ng~l-HlGH~~~~l~ADv~aR~~r~~-G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~ 79 (391)
T PF09334_consen 2 YITTPIPYPNGDL-HLGHLYPYLAADVLARYLRLR-GHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLE 79 (391)
T ss_dssp EEEEEEEETSSS--BHHHHHHHHHHHHHHHHHHHT-T-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCCCC-CCChhHHHHHHHHHHHHHhhc-ccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3456667777653 22 344555555554332110 2556555544210 0123343 46678899999
Q ss_pred HhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEec
Q 023606 157 RLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVS 198 (280)
Q Consensus 157 ~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS 198 (280)
++++++ |.|. .-.+..-.+-+-+.+++|.++|.|-.--..
T Consensus 80 ~~~I~~-D~F~-rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~ 119 (391)
T PF09334_consen 80 ALNISY-DRFI-RTTDDRHKEFVQEIFKRLYDNGYIYKREYE 119 (391)
T ss_dssp HTT----SEEE-ETTSHHHHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HcCCCC-ccee-CCCCHHHHHHHHHHHHHHHhcCceeecccc
Confidence 999976 6543 222212234556778899999988544333
No 433
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=21.17 E-value=1.9e+02 Score=24.84 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=20.4
Q ss_pred cccEEEEecCCC-----CCchhHHHHHHHHHHcCcc
Q 023606 162 SVELYQLHWAGI-----WGNEGFIDGLGDAVEQGLV 192 (280)
Q Consensus 162 ~iDl~~lH~pd~-----~~~~~~~~~L~~lk~~G~i 192 (280)
.+|.+++.-..- ...+++.+.|++|+++|+-
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~ 42 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKP 42 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHCCCE
Confidence 456666643221 3467888888888888853
No 434
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=21.17 E-value=5.7e+02 Score=24.68 Aligned_cols=62 Identities=26% Similarity=0.335 Sum_probs=32.1
Q ss_pred ccEEEEecCCCC----CchhHHHHHHHHHHcCc-ccEEEecC--------ccHHHHHHHHHHHHhcCCCEEEEcc
Q 023606 163 VELYQLHWAGIW----GNEGFIDGLGDAVEQGL-VKAVGVSN--------YSEKRLRNAYEKLKKRGIPLASNQV 224 (280)
Q Consensus 163 iDl~~lH~pd~~----~~~~~~~~L~~lk~~G~-ir~iGvS~--------~~~~~i~~~~~~~~~~~~~~~~~q~ 224 (280)
+++.-+|..+.. +.+..=+++++.++.|+ |+.+=++| ++++++..++..+.+.++...+..+
T Consensus 193 veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEI 267 (471)
T KOG0256|consen 193 VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEI 267 (471)
T ss_pred ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehh
Confidence 466666655442 23334444555555543 55555554 3456666666665555555444433
No 435
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=21.16 E-value=2.4e+02 Score=25.99 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEcccCCcc--------C--CCcch--hhHHHHHHHcCCeEEEcc
Q 023606 201 SEKRLRNAYEKLKKRGIPLASNQVNYSLI--------Y--RKPEE--NGVKAACDELGITLIAYC 253 (280)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~~n~~--------~--~~~~~--~~l~~~~~~~gi~i~a~s 253 (280)
+.+.+++.++..++.+++++++.+...-. + .-++- .++++..+++|+.++.+.
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 56777777777777778877765543211 1 11222 468999999999988774
No 436
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=21.04 E-value=2e+02 Score=25.49 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=16.2
Q ss_pred hHHHHHHHcCCeEEEccc
Q 023606 237 GVKAACDELGITLIAYCP 254 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~sp 254 (280)
++++.|+++|+.+.+|..
T Consensus 241 ~~v~~~~~~Gl~v~vWTv 258 (282)
T cd08605 241 TAVSLVKASGLELGTYGK 258 (282)
T ss_pred HHHHHHHHcCcEEEEeCC
Confidence 589999999999999975
No 437
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.01 E-value=6.6e+02 Score=23.17 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=59.9
Q ss_pred EEEecCCC------------CCchhHHHHHHHHHHcCc---ccEEEecC--ccHHHHHHHHHHHHhcCCCEEEEcccCCc
Q 023606 166 YQLHWAGI------------WGNEGFIDGLGDAVEQGL---VKAVGVSN--YSEKRLRNAYEKLKKRGIPLASNQVNYSL 228 (280)
Q Consensus 166 ~~lH~pd~------------~~~~~~~~~L~~lk~~G~---ir~iGvS~--~~~~~i~~~~~~~~~~~~~~~~~q~~~n~ 228 (280)
+.||.++. .+.+++++++.++.+.++ +.++=+.+ .+.+.++++.+.++ +++..++-++||+
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk--~l~~~vnlI~~N~ 285 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLA--GIPVRLNPIAVND 285 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHh--cCCCeEEEeccCC
Confidence 55687664 246788888888887653 23433333 46788888888765 3456888899998
Q ss_pred cCCC---cchh---hHHHHH--HHcCCeEEEcccCc------CCCCCC
Q 023606 229 IYRK---PEEN---GVKAAC--DELGITLIAYCPIA------QGSKPR 262 (280)
Q Consensus 229 ~~~~---~~~~---~l~~~~--~~~gi~i~a~spl~------~G~L~~ 262 (280)
...+ +... ...+.. +++|+.+......| +|.|..
T Consensus 286 ~~~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~di~aaCGqL~~ 333 (336)
T PRK14470 286 ATGRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDEHAACGMLAS 333 (336)
T ss_pred CCCCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCCChHhccCcccc
Confidence 5431 1111 234455 35688888877664 466654
No 438
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=20.99 E-value=2.6e+02 Score=22.69 Aligned_cols=82 Identities=21% Similarity=0.312 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHH--cCcccEEEecCccHHHHHHHHHHHHhcCC
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVE--QGLVKAVGVSNYSEKRLRNAYEKLKKRGI 217 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~--~G~ir~iGvS~~~~~~i~~~~~~~~~~~~ 217 (280)
...+.+.+.+.+++--+.+|+ .++.+|-. ...++++.+++..+ +|.|-.=|--+|..-.+..+++. +
T Consensus 24 G~~tl~~i~~~~~~~a~~~g~-~v~~~QSN-----~EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~-----~ 92 (146)
T PRK05395 24 GSTTLADIEALLEEEAAELGV-ELEFFQSN-----HEGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAA-----V 92 (146)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-EEEEEeeC-----cHHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHc-----C
Confidence 346788899999998888997 36766654 23678888888864 46666666667777777777776 5
Q ss_pred CEEEEcccCCccCCC
Q 023606 218 PLASNQVNYSLIYRK 232 (280)
Q Consensus 218 ~~~~~q~~~n~~~~~ 232 (280)
...++.+..|-.+.+
T Consensus 93 ~~P~VEVHiSNi~aR 107 (146)
T PRK05395 93 SIPVIEVHLSNIHAR 107 (146)
T ss_pred CCCEEEEecCCcccc
Confidence 666777877666543
No 439
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=20.80 E-value=4.5e+02 Score=23.64 Aligned_cols=104 Identities=18% Similarity=0.129 Sum_probs=49.8
Q ss_pred HHHHHHCCCCeEEcccccCCCC----------------CCCC--chhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCC-
Q 023606 81 FDTSLDNGITFFDTAEVYGSRA----------------SFGA--INSETLLGRFIKERKQRDPEVEVTVATKFAALPWR- 141 (280)
Q Consensus 81 l~~A~~~Gin~~DTA~~Yg~g~----------------~~~~--~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~- 141 (280)
+..=++.|+|+||-=..|..+. ..+. ..--..+-+||.+.+ .|-|++.-|-.....+
T Consensus 36 i~~QL~~GiRyfDlRv~~~~~~~~~~~~~~~~~~~Hg~~~~~~l~~~L~~i~~FL~~~p----~EvVil~~~~~~~~~d~ 111 (281)
T cd08620 36 VSTQLALGARYFDFRPGYLWPQTRVLVLLNDLYHQHNMIPGQGFDTFLQDVVTFLKANP----TEIVVVHITWDGFDNDC 111 (281)
T ss_pred HHHHHhcCcEEEEEEeeeccCccccccccCcEEEEeeccCCCcHHHHHHHHHHHHHHCC----CcEEEEEEEcCCccccc
Confidence 4455689999999644333211 0000 011233445666654 4556666664322111
Q ss_pred CCH--HHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCc--ccEEE
Q 023606 142 LGR--QSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGL--VKAVG 196 (280)
Q Consensus 142 ~~~--~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~--ir~iG 196 (280)
.++ +.+.+.+.+.+...+.... .+ ......+..|++|++.|+ |-.+.
T Consensus 112 ~~p~~~~l~~~l~~~f~~~~~~~~----~~----~~~~~~~~TL~~L~~~gkrvIv~y~ 162 (281)
T cd08620 112 ARPSAQEVVEALAQALASAKVGYV----TS----GTVSDLAASYAQLRQTGKRLIVLFG 162 (281)
T ss_pred cChhHHHHHHHHHHHhhccCcccc----CC----CccccccCcHHHHHhCCCEEEEEEc
Confidence 233 3444555555544333211 01 112334668888888765 44444
No 440
>PRK13561 putative diguanylate cyclase; Provisional
Probab=20.78 E-value=1.8e+02 Score=29.08 Aligned_cols=72 Identities=15% Similarity=0.278 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHcCcccEEEecCcc--HHHHHHHHHHHHhcCCCEEEEcccCCccCCCcch----hhHHHHHHHcCCeEE
Q 023606 177 EGFIDGLGDAVEQGLVKAVGVSNYS--EKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEE----NGVKAACDELGITLI 250 (280)
Q Consensus 177 ~~~~~~L~~lk~~G~ir~iGvS~~~--~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~----~~l~~~~~~~gi~i~ 250 (280)
+.+...+++|++.|- .|++.+|. ...+..+.+. ..++++++.+.-+++..-... ..++..|+..|+.++
T Consensus 534 ~~~~~~~~~l~~~G~--~i~lddfG~g~ssl~~L~~l---~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~vi 608 (651)
T PRK13561 534 HAAVAILRPLRNAGV--RVALDDFGMGYAGLRQLQHM---KSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVI 608 (651)
T ss_pred HHHHHHHHHHHHCCC--EEEEECCCCCcccHHHHhhc---CCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEE
Confidence 466777888888885 55555553 1233333211 014666766655443321111 247889999999998
Q ss_pred Ecc
Q 023606 251 AYC 253 (280)
Q Consensus 251 a~s 253 (280)
+=.
T Consensus 609 Aeg 611 (651)
T PRK13561 609 AEG 611 (651)
T ss_pred Eec
Confidence 753
No 441
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=20.78 E-value=5e+02 Score=21.62 Aligned_cols=160 Identities=15% Similarity=0.169 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCC---CCHHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWR---LGRQSVLAA 150 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~---~~~~~i~~~ 150 (280)
.......+..+++.|++.+-....++.... ...+-+.+-++.++.+ .-.+++.......+.. ...+.+.+.
T Consensus 34 ~~~~~~~~~~~~~~Gvttv~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (275)
T cd01292 34 YEDTLRALEALLAGGVTTVVDMGSTPPPTT--TKAAIEAVAEAARASA----GIRVVLGLGIPGVPAAVDEDAEALLLEL 107 (275)
T ss_pred HHHHHHHHHHHHhcCceEEEeeEeecCccc--cchHHHHHHHHHHHhc----CeeeEEeccCCCCccccchhHHHHHHHH
Confidence 456778888999999986554444433211 0011334444444431 0133333333211100 012223333
Q ss_pred HHHHHHHhCCCcccEEEEecCCC---CCchhHHHHHHHHHHcCcccEEEecCccH--HHHHHHHHHHHhcCCCEEEEccc
Q 023606 151 LKDSLFRLGLSSVELYQLHWAGI---WGNEGFIDGLGDAVEQGLVKAVGVSNYSE--KRLRNAYEKLKKRGIPLASNQVN 225 (280)
Q Consensus 151 l~~sl~~Lg~d~iDl~~lH~pd~---~~~~~~~~~L~~lk~~G~ir~iGvS~~~~--~~i~~~~~~~~~~~~~~~~~q~~ 225 (280)
++.... .+...++ +|.+.. .+.+.+.+.++.+++.|..-.+=+..... ..+.++++.... +.+..+....
T Consensus 108 i~~~~~-~~~~gi~---~~~~~~~~~~~~~~~~~~~~~a~~~~~~i~~H~~~~~~~~~~~~~~~~~~~~-~~~~~~~H~~ 182 (275)
T cd01292 108 LRRGLE-LGAVGLK---LAGPYTATGLSDESLRRVLEEARKLGLPVVIHAGELPDPTRALEDLVALLRL-GGRVVIGHVS 182 (275)
T ss_pred HHHHHh-cCCeeEe---eCCCCCCCCCCcHHHHHHHHHHHHcCCeEEEeeCCcccCccCHHHHHHHHhc-CCCEEEECCc
Confidence 333222 2444444 443333 25677778888888888876665554432 234455444321 2234443333
Q ss_pred CCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 226 YSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 226 ~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
+. ..+.++..++.|+.+..
T Consensus 183 ~~-------~~~~~~~~~~~g~~~~~ 201 (275)
T cd01292 183 HL-------DPELLELLKEAGVSLEV 201 (275)
T ss_pred cC-------CHHHHHHHHHcCCeEEE
Confidence 21 11467777777776543
No 442
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=20.76 E-value=4e+02 Score=22.33 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhCCCc--ccEEEEecCCCCC-
Q 023606 99 GSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLGLSS--VELYQLHWAGIWG- 175 (280)
Q Consensus 99 g~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg~d~--iDl~~lH~pd~~~- 175 (280)
|++.- |..+.+.|++.+ .++|+..=. .+.+++.+++.+...++.+.-.+ .-++++-......
T Consensus 43 G~~~l------e~~~a~~ia~~~-----a~~~~ld~~----~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~ 107 (178)
T PF14606_consen 43 GNGKL------EPEVADLIAEID-----ADLIVLDCG----PNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAG 107 (178)
T ss_dssp CCCS--------HHHHHHHHHS-------SEEEEEES----HHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTT
T ss_pred Ccccc------CHHHHHHHhcCC-----CCEEEEEee----cCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcccc
Q ss_pred -------------chhHHHHHHHHHHcC
Q 023606 176 -------------NEGFIDGLGDAVEQG 190 (280)
Q Consensus 176 -------------~~~~~~~L~~lk~~G 190 (280)
.+.+-+++++|+++|
T Consensus 108 ~~~~~~~~~~~~~~~~~r~~v~~l~~~g 135 (178)
T PF14606_consen 108 YFDNSRGETVEEFREALREAVEQLRKEG 135 (178)
T ss_dssp TS--TTS--HHHHHHHHHHHHHHHHHTT
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHcC
No 443
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=20.75 E-value=4.3e+02 Score=20.87 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=52.5
Q ss_pred ccCCCCCCCCchhhHHHHHHHHhcccCC-CCCcEEEEecCCCCCCCCCHHHHHHHHHHHHHHhC--CCcccEEE--EecC
Q 023606 97 VYGSRASFGAINSETLLGRFIKERKQRD-PEVEVTVATKFAALPWRLGRQSVLAALKDSLFRLG--LSSVELYQ--LHWA 171 (280)
Q Consensus 97 ~Yg~g~~~~~~~sE~~lG~aL~~~~~~~-~R~~~~I~tK~~~~~~~~~~~~i~~~l~~sl~~Lg--~d~iDl~~--lH~p 171 (280)
.||.-.+ .+.+-++|+..-... |++.++++=..+ .......+-+.+-+.|=+-| -+++-.|. .|.|
T Consensus 27 l~GQhla------~~~v~~ai~~~l~~~~p~KpLVlSfHG~---tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP 97 (127)
T PF06309_consen 27 LFGQHLA------VEVVVNAIKGHLANPNPRKPLVLSFHGW---TGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFP 97 (127)
T ss_pred ccCcHHH------HHHHHHHHHHHHcCCCCCCCEEEEeecC---CCCcHHHHHHHHHHHHHhcccCCCceeeecccccCC
Confidence 3776444 788888888765443 688899888875 35666677788888875544 45666554 3666
Q ss_pred CCCCchhHHHHHHHHH
Q 023606 172 GIWGNEGFIDGLGDAV 187 (280)
Q Consensus 172 d~~~~~~~~~~L~~lk 187 (280)
.....++.-+.|.+.+
T Consensus 98 ~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 98 HNSNVDEYKEQLKSWI 113 (127)
T ss_pred CchHHHHHHHHHHHHH
Confidence 6544445444454443
No 444
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.71 E-value=5.9e+02 Score=22.47 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEccc
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTAE 96 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA~ 96 (280)
.+.++..++.+.--+.||..|+...
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG~ 41 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIGY 41 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEeec
Confidence 3457888888888899999999863
No 445
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=20.67 E-value=3e+02 Score=26.42 Aligned_cols=69 Identities=26% Similarity=0.388 Sum_probs=42.4
Q ss_pred CccccceeeeccccCCCCCCCCCccchhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCC
Q 023606 45 DLKVTKLGVGAWSWGDTSYWNNFQWDDRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRD 124 (280)
Q Consensus 45 g~~vs~lglGt~~~g~~~~~~~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~ 124 (280)
|. ||.+|+.-...|.. .-.+...+-|+..-+.|-.+-=---.||.| -..+-++++...
T Consensus 16 Gv-VP~~Gl~~~~VGr~----------~e~~~l~~~l~~v~~G~s~~kfi~G~YGsG--------KTf~l~~i~~~A--- 73 (416)
T PF10923_consen 16 GV-VPRIGLDHIAVGRE----------REIEALDRDLDRVADGGSSFKFIRGEYGSG--------KTFFLRLIRERA--- 73 (416)
T ss_pred CC-CCcccCcceeechH----------HHHHHHHHHHHHHhCCCCeEEEEEeCCCCc--------HHHHHHHHHHHH---
Confidence 54 99999998888764 112333334444334444444455689999 457778887766
Q ss_pred CCCcEEEEecCC
Q 023606 125 PEVEVTVATKFA 136 (280)
Q Consensus 125 ~R~~~~I~tK~~ 136 (280)
+++=|+++.+-
T Consensus 74 -~~~~fvvs~v~ 84 (416)
T PF10923_consen 74 -LEKGFVVSEVD 84 (416)
T ss_pred -HHcCCEEEEEe
Confidence 45555666653
No 446
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=20.57 E-value=1.1e+02 Score=28.52 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=11.6
Q ss_pred hHHHHHHHcCCeEEE
Q 023606 237 GVKAACDELGITLIA 251 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a 251 (280)
.+.+.|+++||.+-.
T Consensus 214 ~i~~~c~~rgI~lAS 228 (377)
T COG3454 214 AIAALCRERGIALAS 228 (377)
T ss_pred HHHHHHHHcCCceec
Confidence 588889988887743
No 447
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=20.57 E-value=6.7e+02 Score=23.53 Aligned_cols=60 Identities=20% Similarity=0.109 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCcccEEEEe-cCCC------------CCc-hhH----HHHHHHHHHcCcccEEEecCcc
Q 023606 140 WRLGRQSVLAALKDSLFRLGLSSVELYQLH-WAGI------------WGN-EGF----IDGLGDAVEQGLVKAVGVSNYS 201 (280)
Q Consensus 140 ~~~~~~~i~~~l~~sl~~Lg~d~iDl~~lH-~pd~------------~~~-~~~----~~~L~~lk~~G~ir~iGvS~~~ 201 (280)
...+.+.+++.++..++ |+.++|.+|.+. .|+. .+. ++. -.+.+.|.+.|. .++++|+|.
T Consensus 172 Pgqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 249 (390)
T PRK06582 172 SGQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKY-FRYEISNYA 249 (390)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCC-ceeeceeee
Confidence 46788888898988886 789999999886 3321 111 121 223355666776 457888885
No 448
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=20.55 E-value=94 Score=23.55 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=16.5
Q ss_pred hHHHHHHHcCCeEEEcccCcCCCCCCCCCCCCCc
Q 023606 237 GVKAACDELGITLIAYCPIAQGSKPRKRNWWFHC 270 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~spl~~G~L~~~~~~~~~~ 270 (280)
+.+.||+++|+.+..-.|-....-.+.|..+|.-
T Consensus 60 ~Ai~yaer~G~~Y~V~~p~~r~~~~ksY~dNF~~ 93 (101)
T PF04800_consen 60 DAIAYAERNGWDYEVEEPKKRKRRPKSYADNFSW 93 (101)
T ss_dssp HHHHHHHHCT-EEEEE-STT--------------
T ss_pred HHHHHHHHcCCeEEEeCCCCCcCCcccHHHhCCc
Confidence 6899999999999999888776655566554443
No 449
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=3.9e+02 Score=22.06 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHH
Q 023606 71 DRKMKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAA 150 (280)
Q Consensus 71 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~ 150 (280)
+-+++...-.+++|-+.||.+|=.|+.||. ..+ +++.-... .=+++++|.-..+ ...+...+.+.
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~----------tA~-k~lemveg---~lkvVvVthh~Gf-~e~g~~e~~~E 74 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGY----------TAL-KALEMVEG---DLKVVVVTHHAGF-EEKGTQEMDEE 74 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccH----------HHH-HHHHhccc---CceEEEEEeeccc-ccCCceecCHH
Confidence 456677778888999999999999999995 111 12222211 1235655554221 22333456677
Q ss_pred HHHHHHHhCCC
Q 023606 151 LKDSLFRLGLS 161 (280)
Q Consensus 151 l~~sl~~Lg~d 161 (280)
++.-|+..|.+
T Consensus 75 ~~~~L~erGa~ 85 (186)
T COG1751 75 VRKELKERGAK 85 (186)
T ss_pred HHHHHHHcCce
Confidence 88888888853
No 450
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=20.51 E-value=3e+02 Score=25.07 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=16.7
Q ss_pred hHHHHHHHcCCeEEEcccC
Q 023606 237 GVKAACDELGITLIAYCPI 255 (280)
Q Consensus 237 ~l~~~~~~~gi~i~a~spl 255 (280)
.+++.|+++||.|.||-.+
T Consensus 74 ~~I~eaHkrGlevHAW~~~ 92 (311)
T PF02638_consen 74 FMIEEAHKRGLEVHAWFRV 92 (311)
T ss_pred HHHHHHHHcCCEEEEEEEe
Confidence 4899999999999999743
No 451
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=20.40 E-value=2.6e+02 Score=25.47 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHhcCCCEEEEccc-CC-------------cc--CC--CcchhhHHHHHHHcCCeEEEc
Q 023606 201 SEKRLRNAYEKLKKRGIPLASNQVN-YS-------------LI--YR--KPEENGVKAACDELGITLIAY 252 (280)
Q Consensus 201 ~~~~i~~~~~~~~~~~~~~~~~q~~-~n-------------~~--~~--~~~~~~l~~~~~~~gi~i~a~ 252 (280)
+.+.++++++..++.++|++++.+. ++ -+ +. -++-.++++..+++|+.++.+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~ 90 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTY 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEE
Confidence 7788888888888888998887663 10 01 11 122237999999999998876
No 452
>PRK07094 biotin synthase; Provisional
Probab=20.39 E-value=6.3e+02 Score=22.67 Aligned_cols=123 Identities=18% Similarity=0.151 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHCCCCeEEcc----cccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHH
Q 023606 72 RKMKAAKAAFDTSLDNGITFFDTA----EVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSV 147 (280)
Q Consensus 72 ~~~~~~~~~l~~A~~~Gin~~DTA----~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i 147 (280)
.+.++..+.++.+.+.|++.|--. ..|. .+.+-+.++.... +.++.+..-.+ ..+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~----------~~~l~~l~~~i~~---~~~l~i~~~~g----~~~~e-- 130 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYT----------DEKIADIIKEIKK---ELDVAITLSLG----ERSYE-- 130 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC----------HHHHHHHHHHHHc---cCCceEEEecC----CCCHH--
Confidence 366788888999999999876532 1121 3445555555431 12333332222 12222
Q ss_pred HHHHHHHHHHhCCCcccEEEEecCC---------CCCchhHHHHHHHHHHcCccc----EEEecCccHHHHHHHHHHHHh
Q 023606 148 LAALKDSLFRLGLSSVELYQLHWAG---------IWGNEGFIDGLGDAVEQGLVK----AVGVSNYSEKRLRNAYEKLKK 214 (280)
Q Consensus 148 ~~~l~~sl~~Lg~d~iDl~~lH~pd---------~~~~~~~~~~L~~lk~~G~ir----~iGvS~~~~~~i~~~~~~~~~ 214 (280)
.+ ..|+..|++.+-+ -+...+ ....++.+++++.+++.|.-- -+|+...+.+.+.+.++.+++
T Consensus 131 --~l-~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~ 206 (323)
T PRK07094 131 --EY-KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKE 206 (323)
T ss_pred --HH-HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHh
Confidence 22 2455667655431 111111 134678899999999999622 255556688888888888776
Q ss_pred cCC
Q 023606 215 RGI 217 (280)
Q Consensus 215 ~~~ 217 (280)
.+.
T Consensus 207 l~~ 209 (323)
T PRK07094 207 LDL 209 (323)
T ss_pred CCC
Confidence 553
No 453
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=20.38 E-value=4.3e+02 Score=20.72 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHH-CCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLD-NGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (280)
Q Consensus 75 ~~~~~~l~~A~~-~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (280)
+...+++..+++ +|+..+|+...-.. |+.+-.+.+.. -+++..+=. .-+.....+.+-+
T Consensus 16 d~g~~iv~~~l~~~GfeVi~lg~~~s~---------e~~v~aa~e~~------adii~iSsl-----~~~~~~~~~~~~~ 75 (132)
T TIGR00640 16 DRGAKVIATAYADLGFDVDVGPLFQTP---------EEIARQAVEAD------VHVVGVSSL-----AGGHLTLVPALRK 75 (132)
T ss_pred HHHHHHHHHHHHhCCcEEEECCCCCCH---------HHHHHHHHHcC------CCEEEEcCc-----hhhhHHHHHHHHH
Confidence 456678888875 69999998755443 77666665543 345444333 1223333445555
Q ss_pred HHHHhCCCcccE-EEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHH
Q 023606 154 SLFRLGLSSVEL-YQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (280)
Q Consensus 154 sl~~Lg~d~iDl-~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~ 210 (280)
.|+..+.+ |+ +++...- +. +..++|++.|.-+.|+..+--.+.+..+.+
T Consensus 76 ~L~~~g~~--~i~vivGG~~--~~----~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 76 ELDKLGRP--DILVVVGGVI--PP----QDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred HHHhcCCC--CCEEEEeCCC--Ch----HhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 56666654 43 4444211 11 234669999999999998844444444433
No 454
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.38 E-value=6e+02 Score=22.37 Aligned_cols=66 Identities=9% Similarity=-0.013 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCcccEEEEecCCCCCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHH
Q 023606 142 LGRQSVLAALKDSLFRLGLSSVELYQLHWAGIWGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYE 210 (280)
Q Consensus 142 ~~~~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~ 210 (280)
.+.+.+.+-+++..+..+ +.+++-|.|......-..+.+++|.+...|..|=-|+.+...+.++.+
T Consensus 109 ~~~~~l~~~~~~ia~~~~---~pi~lYn~P~~~g~~ls~~~~~~L~~~p~v~giK~s~~~~~~~~~~~~ 174 (284)
T cd00950 109 PSQEGLYAHFKAIAEATD---LPVILYNVPGRTGVNIEPETVLRLAEHPNIVGIKEATGDLDRVSELIA 174 (284)
T ss_pred CCHHHHHHHHHHHHhcCC---CCEEEEEChhHhCCCCCHHHHHHHhcCCCEEEEEECCCCHHHHHHHHH
Confidence 456777777777777633 677777777653333345666666666666665556656666665543
No 455
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.36 E-value=2.9e+02 Score=18.73 Aligned_cols=63 Identities=11% Similarity=0.132 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHHH
Q 023606 75 KAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKDS 154 (280)
Q Consensus 75 ~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~s 154 (280)
....++-+...++|+|..|.......+ ...+++.-.+..+..+.+.+.+++.++..
T Consensus 11 Giv~~it~~l~~~g~nI~~~~~~~~~~------------------------~~~f~~~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 11 GIVAAVSGFLAEHGGNIVESDQFVDPD------------------------SGRFFMRVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred CHHHHHHHHHHHcCCCEEeeeeeecCC------------------------CCeEEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 567778888889999999986654221 12344444443211125688888888888
Q ss_pred HHHhCCC
Q 023606 155 LFRLGLS 161 (280)
Q Consensus 155 l~~Lg~d 161 (280)
.+.++..
T Consensus 67 ~~~l~~~ 73 (74)
T cd04875 67 AAEFDMD 73 (74)
T ss_pred HHHcCCc
Confidence 8887764
No 456
>PLN02540 methylenetetrahydrofolate reductase
Probab=20.31 E-value=8.8e+02 Score=24.31 Aligned_cols=158 Identities=17% Similarity=0.173 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHCCCCeEEcccccCCCCCCCCchhhHHHHHHHHhcccCCCCCcEEEEecCCCCCCCCCHHHHHHHHHH
Q 023606 74 MKAAKAAFDTSLDNGITFFDTAEVYGSRASFGAINSETLLGRFIKERKQRDPEVEVTVATKFAALPWRLGRQSVLAALKD 153 (280)
Q Consensus 74 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~~~~~~~sE~~lG~aL~~~~~~~~R~~~~I~tK~~~~~~~~~~~~i~~~l~~ 153 (280)
.+...+.++.-.+.+-.|+|.+..-|... ++..+.-+..-... -.+-.+-.+.. .+.+...+...|+.
T Consensus 14 ~~nL~~~~~rl~~~~P~FisVT~gAgGst------~~~Tl~la~~lq~~----~Gie~i~HLTC--rd~n~~~L~~~L~~ 81 (565)
T PLN02540 14 VDNLFERMDRMVAHGPLFCDITWGAGGST------ADLTLDIANRMQNM----ICVETMMHLTC--TNMPVEKIDHALET 81 (565)
T ss_pred HHHHHHHHHHHhccCCCEEEeCCCCCCCc------HHHHHHHHHHHHHh----cCCCeeEEeee--cCCCHHHHHHHHHH
Confidence 34555666666778999999764443322 25544433321110 01112222211 45667777777776
Q ss_pred HHHHhCCCcccEEEEecCCCC----------CchhHHHHHHHHHHc-CcccEEEecCccH------------------HH
Q 023606 154 SLFRLGLSSVELYQLHWAGIW----------GNEGFIDGLGDAVEQ-GLVKAVGVSNYSE------------------KR 204 (280)
Q Consensus 154 sl~~Lg~d~iDl~~lH~pd~~----------~~~~~~~~L~~lk~~-G~ir~iGvS~~~~------------------~~ 204 (280)
. ..+|+. +++.|-...+. ....+.+-++.++++ |....||+..+.. ..
T Consensus 82 a-~~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~d 158 (565)
T PLN02540 82 I-KSNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKD 158 (565)
T ss_pred H-HHCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHH
Confidence 6 777865 45555542221 012355555666654 5567899986531 24
Q ss_pred HHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcC--CeEEE
Q 023606 205 LRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELG--ITLIA 251 (280)
Q Consensus 205 i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~g--i~i~a 251 (280)
+..+.+..+ .|..+.+-|.-|+.- ... ..++.|++.| ++|++
T Consensus 159 l~~Lk~Kvd-AGAdFiITQlfFD~d---~f~-~f~~~~r~~Gi~vPIip 202 (565)
T PLN02540 159 LAYLKEKVD-AGADLIITQLFYDTD---IFL-KFVNDCRQIGITCPIVP 202 (565)
T ss_pred HHHHHHHHH-cCCCEEeeccccCHH---HHH-HHHHHHHhcCCCCCEEe
Confidence 555544432 356788888888652 111 4788899998 44443
No 457
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.30 E-value=2.8e+02 Score=24.90 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=40.2
Q ss_pred CCchhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcCCCEEEEcccCC
Q 023606 174 WGNEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRGIPLASNQVNYS 227 (280)
Q Consensus 174 ~~~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~~~~~~~q~~~n 227 (280)
..++..++-++.+.+.|+.-=||...|+.++++++.+.+++ + +.+.-.+|+
T Consensus 77 T~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v-~vv~a~NfS 127 (266)
T COG0289 77 TTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAEK--V-PVVIAPNFS 127 (266)
T ss_pred CCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHhh--C-CEEEeccch
Confidence 44678899999999999999999999999999998888764 2 334444554
No 458
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=20.20 E-value=4.5e+02 Score=22.71 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHHHHhcCCCEEEEcccCCccCCCcchhhHHHHHHHcCCeEEE
Q 023606 177 EGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEKLKKRGIPLASNQVNYSLIYRKPEENGVKAACDELGITLIA 251 (280)
Q Consensus 177 ~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~~~~~~~~~~~~q~~~n~~~~~~~~~~l~~~~~~~gi~i~a 251 (280)
+...+.+..++++=-=--||..+. ++++++++.+. +-+|.+ .+.... ++++.|..++|+++.
T Consensus 49 p~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~a----Ga~fiV--------sP~~~~-ev~~~a~~~~ip~~P 111 (211)
T COG0800 49 PAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAA----GAQFIV--------SPGLNP-EVAKAANRYGIPYIP 111 (211)
T ss_pred CCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHc----CCCEEE--------CCCCCH-HHHHHHHhCCCcccC
Confidence 344555555554422356888887 89999999775 344544 222222 699999999998765
No 459
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=20.17 E-value=1.4e+02 Score=22.42 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=29.7
Q ss_pred chhHHHHHHHHHHcCcccEEEecCccHHHHHHHHHHHHhcC
Q 023606 176 NEGFIDGLGDAVEQGLVKAVGVSNYSEKRLRNAYEKLKKRG 216 (280)
Q Consensus 176 ~~~~~~~L~~lk~~G~ir~iGvS~~~~~~i~~~~~~~~~~~ 216 (280)
..+.++.|-+|.++|+++-.=-..|+.+++.++++..+...
T Consensus 80 ~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~ 120 (127)
T PF13602_consen 80 RAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGH 120 (127)
T ss_dssp HHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCC
Confidence 35678899999999999877666788899999988765443
No 460
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=20.13 E-value=2.7e+02 Score=26.29 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=37.6
Q ss_pred hhHHHHHHHHhcccCCCCCcEEEEecCCC--------CCCCCCH----HHHHHHHHHHHHHhCCCcccEEEEecCCC
Q 023606 109 SETLLGRFIKERKQRDPEVEVTVATKFAA--------LPWRLGR----QSVLAALKDSLFRLGLSSVELYQLHWAGI 173 (280)
Q Consensus 109 sE~~lG~aL~~~~~~~~R~~~~I~tK~~~--------~~~~~~~----~~i~~~l~~sl~~Lg~d~iDl~~lH~pd~ 173 (280)
++..+.+.+++.+ ..=+||-||+-. .+..++. +.|++.+.+.|++-|+....+|++-+.+.
T Consensus 129 ndv~La~~i~~~g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl 201 (376)
T PF05049_consen 129 NDVQLAKEIQRMG----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDL 201 (376)
T ss_dssp HHHHHHHHHHHTT-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTT
T ss_pred hhHHHHHHHHHcC----CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCc
Confidence 3888899999886 355778999852 1223443 45777788888888999999999987654
No 461
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=20.08 E-value=5.6e+02 Score=21.94 Aligned_cols=54 Identities=9% Similarity=-0.009 Sum_probs=31.2
Q ss_pred HHHhCCCcccEEEEecCCCC--CchhHHHHHHHHHHcCcccEEEecCc-cHHHHHHHHHH
Q 023606 155 LFRLGLSSVELYQLHWAGIW--GNEGFIDGLGDAVEQGLVKAVGVSNY-SEKRLRNAYEK 211 (280)
Q Consensus 155 l~~Lg~d~iDl~~lH~pd~~--~~~~~~~~L~~lk~~G~ir~iGvS~~-~~~~i~~~~~~ 211 (280)
++.+|. |.+.+|..+.. ...--|+.+.++++.-.+.-|..... +++.++++++.
T Consensus 158 l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~ 214 (243)
T cd04731 158 VEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEE 214 (243)
T ss_pred HHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHh
Confidence 345554 56667664431 11123566666766656666666665 57777777653
Done!