BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023607
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 94 PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
PT+I WS G EV + GS++NW T+I L +S DF + LP G +QY+F VDG W + P
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDP 70
Query: 154 DLPSTQDDDGNVYNILDLQE 173
P G + N++ +++
Sbjct: 71 SEPVVTSQLGTINNLIHVKK 90
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 94 PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
PT+ W+ G EV + GS++NW +++ L RS +F + LP G +QY+F VDG W + P
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDP 70
Query: 154 DLPSTQDDDGNVYNILDLQE 173
P G V NI+ +++
Sbjct: 71 SEPIVTSQLGTVNNIIQVKK 90
>pdb|4EAI|B Chain B, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|B Chain B, Co-Crystal Of Ampk Core With Amp Soaked With Atp
Length = 85
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 202 AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGS 261
+E+ K PP++PPHL +LN + P L P HV+LNHLY K SV+ L +
Sbjct: 11 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSA 68
Query: 262 THRFLAKYVTVVLYK 276
THR+ KYVT +LYK
Sbjct: 69 THRYKKKYVTTLLYK 83
>pdb|2V8Q|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|B Chain B, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|B Chain B, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|B Chain B, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|B Chain B, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|B Chain B, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
Length = 87
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 202 AEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGS 261
+E+ K PP++PPHL +LN + P L P HV+LNHLY K SV+ L +
Sbjct: 13 SEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSA 70
Query: 262 THRFLAKYVTVVLYK 276
THR+ KYVT +LYK
Sbjct: 71 THRYKKKYVTTLLYK 85
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 94 PTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAP 153
PT+ W+ G EV + GS++NW +++ RS +F + LP G +QY+F VDG W + P
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNW-SKLPXTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDP 70
Query: 154 DLPSTQDDDGNVYNILDLQE 173
P G V NI+ +++
Sbjct: 71 SEPIVTSQLGTVNNIIQVKK 90
>pdb|4EAG|B Chain B, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
Length = 85
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 203 EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGST 262
E+ K PP++PPHL +LN P L P HV+LNHLY K G V+ L +T
Sbjct: 12 EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSAT 69
Query: 263 HRFLAKYVTVVLYK 276
HR+ KYVT +LYK
Sbjct: 70 HRYKKKYVTTLLYK 83
>pdb|4EAK|B Chain B, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|B Chain B, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 72
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 207 KEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFL 266
K PP++PPHL +LN P L P HV+LNHLY K G V+ L +THR+
Sbjct: 3 KAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKDG--VMVLSATHRYK 60
Query: 267 AKYVTVVLYKSM 278
KYVT +LYK +
Sbjct: 61 KKYVTTLLYKPI 72
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 97/251 (38%), Gaps = 73/251 (29%)
Query: 93 IPTMITWSHDGCEVAVEGSWDNWKTRIAL----QRSGKDFTIMKVLPSGVYQYRFLVDGL 148
+P I W G +V V GS+ W+ I L +G +++LP G +++RF+VD
Sbjct: 4 VPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLP-GTHRFRFIVDNE 62
Query: 149 WKYAPDLPSTQDDDGNVYNILDLQ--EYVPDDLESISSFE-----PPQSPETSYNNLQLT 201
+ + LP+ D GN N ++++ E P + E I S E PP S +S LQ+
Sbjct: 63 LRVSDFLPTATDQMGNFVNYIEVRQPEKNPTN-EKIRSKEADSMRPPTSDRSSI-ALQIG 120
Query: 202 A-------------EDFAKEPPL------------------------------------- 211
ED + PPL
Sbjct: 121 KDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTLDRQQSNTDTSWLTP 180
Query: 212 --VPPHLQMTLLNVPASYMEI-----PPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHR 264
+PP L+ +LN + + L P HVVLNHL K VA S R
Sbjct: 181 PQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVA--SIVR 238
Query: 265 FLAKYVTVVLY 275
+ KYVT +LY
Sbjct: 239 YKQKYVTQILY 249
>pdb|2OOX|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|B Chain B, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|D Chain D, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2QR1|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|B Chain B, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|D Chain D, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 97
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 220 LLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM 278
+LN +Y E L P HV+LNHL + G V+AL +T R+ KYVT ++K+
Sbjct: 39 ILNSNTAYKEDQSVLPNPNHVLLNHLAAANTQLG--VLALSATTRYHRKYVTTAMFKNF 95
>pdb|3T4N|B Chain B, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|B Chain B, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|B Chain B, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 113
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 209 PPLVPPHLQMTLLNVPASYMEI-----PPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTH 263
PP +PP L+ +LN + + L P HVVLNHL K VA S
Sbjct: 38 PPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSIKHNTLCVA--SIV 95
Query: 264 RFLAKYVTVVLYKSMQ 279
R+ KYVT +LY ++
Sbjct: 96 RYKQKYVTQILYTPIE 111
>pdb|4AEF|A Chain A, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
pdb|4AEF|B Chain B, The Crystal Structure Of Thermostable Amylase From The
Pyrococcus
Length = 645
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 121 LQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQ 159
+++ GK++ I LP GV+ Y F +DG + PD P +
Sbjct: 46 MEQEGKNWKIKIALPEGVWHYAFSIDGKFVLDPDNPERR 84
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 105 EVAVEGSWDNWKTRIALQR-SGKDFTIMKV-LPSGVYQYRFLVDGLWKY 151
V + G W RI L G F I+K LP G ++Y++++DG W +
Sbjct: 183 RVEISGLDIGWGQRIPLTLGKGTGFWILKRELPEGQFEYKYIIDGEWTH 231
>pdb|3AC0|A Chain A, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|B Chain B, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|C Chain C, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
pdb|3AC0|D Chain D, Crystal Structure Of Beta-Glucosidase From Kluyveromyces
Marxianus In Complex With Glucose
Length = 845
Score = 28.9 bits (63), Expect = 3.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 157 STQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAE 203
+T+D D V +L + ++V D+LE E PE++ NN + T++
Sbjct: 267 TTEDVDDRVRQVLKMIKFVVDNLEKTGIVE--NGPESTSNNTKETSD 311
>pdb|3ABZ|A Chain A, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|B Chain B, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|C Chain C, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
pdb|3ABZ|D Chain D, Crystal Structure Of Se-Met Labeled Beta-Glucosidase From
Kluyveromyces Marxianus
Length = 845
Score = 27.7 bits (60), Expect = 8.0, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 157 STQDDDGNVYNILDLQEYVPDDLESISSFEPPQSPETSYNNLQLTAE 203
+T+D D V +L ++V D+LE E PE++ NN + T++
Sbjct: 267 TTEDVDDRVRQVLKXIKFVVDNLEKTGIVE--NGPESTSNNTKETSD 311
>pdb|2OOX|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|A Chain A, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|C Chain C, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2QR1|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|A Chain A, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|C Chain C, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 137
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 120 ALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEY 174
ALQR+G FT+ K + + + W ++P + + N Y ++LQ Y
Sbjct: 33 ALQRAGAQFTVPKPVNGKYRSDMYTIKSRW----EIPHCKREGKNTYAYIELQLY 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,772,836
Number of Sequences: 62578
Number of extensions: 445469
Number of successful extensions: 582
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 559
Number of HSP's gapped (non-prelim): 20
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)