BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023607
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SCY5|KINB2_ARATH SNF1-related protein kinase regulatory subunit beta-2
OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1
Length = 289
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/289 (71%), Positives = 239/289 (82%), Gaps = 9/289 (3%)
Query: 1 MGNVNAREDG-SNSPSGVEEGESNNSVQEEGIIVPDG-------LMGQSPPHSPRATHSP 52
MGNVNARE+ SN+ S VE+ ++ +E DG LMGQSPPHSPRAT SP
Sbjct: 1 MGNVNAREEANSNNASAVEDEDAEICSREAMSAASDGNHVAPPELMGQSPPHSPRATQSP 60
Query: 53 LMFTPQVPVVPLQRPDEMQIPNLSWMQT-SSGYEDMGDGVGIPTMITWSHDGCEVAVEGS 111
LMF PQVPV+PLQRPDE+ IPN SWMQ+ SS YE+ + GIPTMITW H G E+AVEGS
Sbjct: 61 LMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASNEQGIPTMITWCHGGKEIAVEGS 120
Query: 112 WDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDL 171
WDNWKTR LQRSGKDFTIMKVLPSGVY+YRF+VDG W++AP+LP +DD GN +NILDL
Sbjct: 121 WDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNILDL 180
Query: 172 QEYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIP 231
Q+YVP+D++SIS FEPPQSPE SY+NL L AED++KEPP+VPPHLQMTLLN+PA+ +IP
Sbjct: 181 QDYVPEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIP 240
Query: 232 PPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 280
PL RPQHV+LNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKS+QR
Sbjct: 241 SPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289
>sp|Q84VQ1|KINB1_ARATH SNF1-related protein kinase regulatory subunit beta-1
OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1
Length = 283
Score = 231 bits (589), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 117/228 (51%), Positives = 156/228 (68%), Gaps = 5/228 (2%)
Query: 53 LMFTPQVPVVPLQRPDEMQIPNLSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSW 112
+F PQVPV PLQR + N+ W Q+ +++ + GIPT+ITW+ G +VAVEGSW
Sbjct: 61 FLFAPQVPVAPLQRANAPPPNNIQWNQSQRVFDNPPEQ-GIPTIITWNQGGNDVAVEGSW 119
Query: 113 DNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ 172
DNW++R LQ+SGKD +I+ VLPSG+Y Y+ +VDG KY PDLP D+ GNV NILD+
Sbjct: 120 DNWRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNILDVH 179
Query: 173 EYVPDDLESISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPP 232
+VP++ ESI FE P SP+ SY AED+AKEP VPP L +TLL E
Sbjct: 180 NFVPENPESIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLGT----TEETA 235
Query: 233 PLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 280
++PQHVVLNH+++++G + S+VALG THRF +KY+TVVLYK + R
Sbjct: 236 IATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283
>sp|O43741|AAKB2_HUMAN 5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens
GN=PRKAB2 PE=1 SV=1
Length = 272
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 87/257 (33%), Positives = 126/257 (49%), Gaps = 37/257 (14%)
Query: 44 HSPRATHSPLMFTPQVPVVPLQRPDEMQIPN----LSWMQTSSGYEDMGDGV-----GIP 94
H+P H ++ + P V PD ++P +SW Q D+ D V P
Sbjct: 27 HAPGKEHKIMVGSTDDPSV-FSLPDS-KLPGDKEFVSWQQ------DLEDSVKPTQQARP 78
Query: 95 TMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPD 154
T+I WS G EV + GS++NW T+I L +S DF + LP G +QY+F VDG W + P
Sbjct: 79 TVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPS 138
Query: 155 LPSTQDDDGNVYNILDLQEYVPDDLESISS--FEPPQSPETSYNNLQ------------- 199
P G + N++ +++ D E + + +S ETS +L
Sbjct: 139 EPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESSETSCRDLSSSPPGPYGQEMYA 195
Query: 200 LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVAL 259
+E+ K PP++PPHL +LN + P L P HV+LNHLY K SV+ L
Sbjct: 196 FRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVL 253
Query: 260 GSTHRFLAKYVTVVLYK 276
+THR+ KYVT +LYK
Sbjct: 254 SATHRYKKKYVTTLLYK 270
>sp|Q9QZH4|AAKB2_RAT 5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 109/212 (51%), Gaps = 25/212 (11%)
Query: 85 EDMGDGV-----GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVY 139
+D+ D V PT+I WS G EV + GS++NW T+I L +S DF + LP G +
Sbjct: 63 QDLDDSVKPTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEH 122
Query: 140 QYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISS--FEPPQSPETSYNN 197
QY+F VDG W + P P G + N++ +++ D E + + +S ETS +
Sbjct: 123 QYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESSETSCRD 179
Query: 198 LQ-------------LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNH 244
L +E+ K PP++PPHL +LN + P L P HV+LNH
Sbjct: 180 LSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH 239
Query: 245 LYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 276
LY K SV+ L +THR+ KYVT +LYK
Sbjct: 240 LYALSTKD--SVMVLSATHRYKKKYVTTLLYK 269
>sp|Q6PAM0|AAKB2_MOUSE 5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus
GN=Prkab2 PE=1 SV=1
Length = 271
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 109/212 (51%), Gaps = 25/212 (11%)
Query: 85 EDMGDGV-----GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVY 139
+D+ D V PT+I WS G EV + GS++NW T+I L +S DF + LP G +
Sbjct: 63 QDLDDSVKPAQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEH 122
Query: 140 QYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLESISS--FEPPQSPETSYNN 197
QY+F VDG W + P P G + N++ +++ D E + + +S ETS +
Sbjct: 123 QYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKK---SDFEVFDALKLDSMESSETSCRD 179
Query: 198 LQ-------------LTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNH 244
L +E+ K PP++PPHL +LN + P L P HV+LNH
Sbjct: 180 LSSSPPGPYGQEMYVFRSEERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNH 239
Query: 245 LYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 276
LY K SV+ L +THR+ KYVT +LYK
Sbjct: 240 LYALSIKD--SVMVLSATHRYKKKYVTTLLYK 269
>sp|Q9R078|AAKB1_MOUSE 5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus
GN=Prkab1 PE=1 SV=2
Length = 270
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 75 LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 134
L+W Q D PT+ W+ G EV + GS++NW +++ L RS +F + L
Sbjct: 61 LAW-QHDLEANDKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDL 118
Query: 135 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSFE 186
P G +QY+F VDG W + P P G V NI+ +++ + D + E
Sbjct: 119 PEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSE 178
Query: 187 PPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNH 244
SP Y+ + E+ K PP++PPHL +LN P L P HV+LNH
Sbjct: 179 LSSSPPGPYHQEPYMSKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNH 238
Query: 245 LYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 276
LY K G V+ L +THR+ KYVT +LYK
Sbjct: 239 LYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|P80386|AAKB1_RAT 5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus
GN=Prkab1 PE=1 SV=4
Length = 270
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 68 DEMQIPN----LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQR 123
+EM+ P L+W Q + PT+ W+ G EV + GS++NW +++ L R
Sbjct: 50 EEMKAPEKEEFLAW-QHDLEVNEKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTR 107
Query: 124 SGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YV 175
S +F + LP G +QY+F VDG W + P P G V NI+ +++ +
Sbjct: 108 SQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALM 167
Query: 176 PDDLESISSFEPPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPP 233
D + E SP Y+ + E+ K PP++PPHL +LN P
Sbjct: 168 VDSQKCSDVSELSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDPAL 227
Query: 234 LSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 276
L P HV+LNHLY K G V+ L +THR+ KYVT +LYK
Sbjct: 228 LPEPNHVMLNHLYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|Q5R801|AAKB1_PONAB 5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 103/212 (48%), Gaps = 14/212 (6%)
Query: 75 LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 134
L+W Q D PT+ W+ G EV + GS++NW +++ L RS +F + L
Sbjct: 61 LAW-QRDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDL 118
Query: 135 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSFE 186
P G +QY+F VDG W + P P G V NI+ +++ + D + E
Sbjct: 119 PEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSE 178
Query: 187 PPQSPETSYNN--LQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNH 244
SP Y+ E+ + PP++PPHL +LN P L P HV+LNH
Sbjct: 179 LSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNH 238
Query: 245 LYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 276
LY K G V+ L +THR+ KYVT +LYK
Sbjct: 239 LYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|Q5BIS9|AAKB1_BOVIN 5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus
GN=PRKAB1 PE=2 SV=3
Length = 270
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 104/212 (49%), Gaps = 14/212 (6%)
Query: 75 LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 134
L+W Q D PT+ W+ G EV + GS++NW +++ L RS +F + L
Sbjct: 61 LAW-QHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDL 118
Query: 135 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSFE 186
P G +QY+F VDG W + P P G V N++ +++ + D + E
Sbjct: 119 PEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNVIQVKKTDFEVFDALMVDSQKCSDVSE 178
Query: 187 PPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNH 244
SP Y+ + E+ K PP++PPHL +LN P L P HV+LNH
Sbjct: 179 LSSSPPGPYHQEPYISKPEERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNH 238
Query: 245 LYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 276
LY K G V+ L +THR+ KYVT +LYK
Sbjct: 239 LYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|Q9Y478|AAKB1_HUMAN 5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens
GN=PRKAB1 PE=1 SV=4
Length = 270
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 103/212 (48%), Gaps = 14/212 (6%)
Query: 75 LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVL 134
L+W Q D PT+ W+ G EV + GS++NW +++ L RS +F + L
Sbjct: 61 LAW-QHDLEVNDKAPAQARPTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDL 118
Query: 135 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE--------YVPDDLESISSFE 186
P G +QY+F VDG W + P P G V NI+ +++ + D + E
Sbjct: 119 PEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFEVFDALMVDSQKCSDVSE 178
Query: 187 PPQSPETSYNNLQLTA--EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNH 244
SP Y+ E+ + PP++PPHL +LN P L P HV+LNH
Sbjct: 179 LSSSPPGPYHQEPYVCKPEERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNH 238
Query: 245 LYMQKGKSGPSVVALGSTHRFLAKYVTVVLYK 276
LY K G V+ L +THR+ KYVT +LYK
Sbjct: 239 LYALSIKDG--VMVLSATHRYKKKYVTTLLYK 268
>sp|P78789|YC63_SCHPO Uncharacterized protein C1919.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC1919.03c PE=1 SV=2
Length = 298
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 34/212 (16%)
Query: 90 GVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLW 149
G +PT+I W G V V GS+ WK +I L +S +D+T++ L G +++FLVDG+W
Sbjct: 96 GPCVPTIIRWRGGGEVVYVTGSFSRWKKKIQLLKS-EDYTVLLQLRPGTQRFKFLVDGIW 154
Query: 150 KYAPDLPSTQDDDGNVYNILDLQ------EYVPDDLESISSFEPPQSPETSYNNLQLTAE 203
+ D P+ D +GN+YN L+++ + + L + + P + S E
Sbjct: 155 CCSSDFPTATDAEGNLYNYLEVEANEKLGASIDERLSQVHTDLPMEEKSES--------E 206
Query: 204 DFAKEPP--LVPPHLQ---------------MTLLNVPASYMEIPPPLSRPQHVVLNHLY 246
++ E P L LQ +LN +Y E L P HV+LNHL
Sbjct: 207 QYSTEIPAFLTSNTLQELKLPKPPSLPPHLEKCILNSNTAYKEDQSVLPNPNHVLLNHLA 266
Query: 247 MQKGKSGPSVVALGSTHRFLAKYVTVVLYKSM 278
+ G V+AL +T R+ KYVT ++K+
Sbjct: 267 AANTQLG--VLALSATTRYHRKYVTTAMFKNF 296
>sp|Q9ZUU8|KINB3_ARATH SNF1-related protein kinase regulatory subunit beta-3
OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1
Length = 114
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 72/107 (67%), Gaps = 6/107 (5%)
Query: 176 PDDLE--SISSFEPPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPASYMEIPPP 233
PDD E ++ FE P SP +SYNN+ + ED ++PP VPPHLQ +LL S ME+
Sbjct: 6 PDDHEDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLGNQGS-MEL--- 61
Query: 234 LSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSMQR 280
PQ+VVLNHLY++ + SVVALG +HRF K+VTVV+YK +QR
Sbjct: 62 AYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQR 108
>sp|P80387|AAKB1_PIG 5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus
scrofa GN=PRKAB1 PE=1 SV=1
Length = 122
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 64 LQRPDEMQIPN----LSWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRI 119
L +E++ P L+W Q D PT+ W+ G EV + GS++NW +++
Sbjct: 11 LYHSEEIKAPEKEEFLAW-QHDLEVNDKASAQARPTVFRWTGGGKEVYLSGSFNNW-SKL 68
Query: 120 ALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQE 173
L RS +F + LP G +QY+FLVDG W + P P G V NI+ +++
Sbjct: 69 PLTRSHNNFVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNIIQVKK 122
>sp|P34164|SIP2_YEAST SNF1 protein kinase subunit beta-2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP2 PE=1 SV=3
Length = 415
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 103/265 (38%), Gaps = 73/265 (27%)
Query: 79 QTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIAL----QRSGKDFTIMKVL 134
+ S G ++ + +P I W G +V V GS+ W+ I L +G +++L
Sbjct: 150 EASGGPSEIKSSLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLL 209
Query: 135 PSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQ--EYVPDDLESISSFE-----P 187
P G +++RF+VD + + LP+ D GN N ++++ E P + E I S E P
Sbjct: 210 P-GTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQPEKNPTN-EKIRSKEADSMRP 267
Query: 188 PQSPETSYNNLQLTA-------------EDFAKEPPL----------------------- 211
P S +S LQ+ ED + PPL
Sbjct: 268 PTSDRSSI-ALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTDIPAVFTDPSVMERYYYTL 326
Query: 212 ----------------VPPHLQMTLLNVPASYMEI-----PPPLSRPQHVVLNHLYMQKG 250
+PP L+ +LN + + L P HVVLNHL
Sbjct: 327 DRQQSNTDTSWLTPPQLPPQLENVILNKYYATQDQFNENNSGALPIPNHVVLNHLVTSSI 386
Query: 251 KSGPSVVALGSTHRFLAKYVTVVLY 275
K VA S R+ KYVT +LY
Sbjct: 387 KHNTLCVA--SIVRYKQKYVTQILY 409
>sp|Q04739|GAL83_YEAST SNF1 protein kinase subunit beta-3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GAL83 PE=1 SV=1
Length = 417
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 88 GDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKV---LPSGVYQYRFL 144
G + P ITW G +V V GS+ W+ I L +M V LP G +++RF+
Sbjct: 157 GRAMMFPVDITWQQGGNKVYVTGSFTGWRKMIGLVPVPGQPGLMHVKLQLPPGTHRFRFI 216
Query: 145 VDGLWKYAPDLPSTQDDDGNVYNILDL 171
VD +++ LP+ D GN N +++
Sbjct: 217 VDNELRFSDYLPTATDQMGNFVNYMEV 243
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 209 PPLVPPHLQMTLLN--VPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVVALGSTHRFL 266
PP +PPHL+ +LN A L P HV+LNHL K VA S R+
Sbjct: 347 PPQLPPHLENVILNSYSNAQTDNTSGALPIPNHVILNHLATSSIKHNTLCVA--SIVRYK 404
Query: 267 AKYVTVVLYKSMQ 279
KYVT +LY +Q
Sbjct: 405 QKYVTQILYTPLQ 417
>sp|F4J117|LSF1_ARATH Phosphoglucan phosphatase LSF1, chloroplastic OS=Arabidopsis
thaliana GN=LSF1 PE=1 SV=1
Length = 591
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 86 DMGDGVGIPT---MITWS-HDGCEVAVEGSWD-NWKTRI-ALQRSGKDFTIMKVLPSGVY 139
D G G PT W+ H+G EV + G + NWK I A + G F L G Y
Sbjct: 445 DDGKHDGTPTHSVTFVWNGHEGEEVLLVGDFTGNWKEPIKATHKGGPRFETEVRLTQGKY 504
Query: 140 QYRFLVDGLWKYAPDLPSTQDDDGNVYNIL 169
Y+++++G W+++ P+ +DD GN NI+
Sbjct: 505 YYKYIINGDWRHSATSPTERDDRGNTNNII 534
>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana
GN=SNF4 PE=1 SV=1
Length = 487
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 76 SWMQTSSGYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKTRIA---LQRSGKDFTIMK 132
S + +S G + PT W + G V + GS+ W + L+ F ++
Sbjct: 4 STLDSSRGNSAASGQLLTPTRFVWPYGGRRVFLSGSFTRWTEHVPMSPLEGCPTVFQVIC 63
Query: 133 VLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNIL 169
L G +QY+F VDG W++ P + G V I
Sbjct: 64 NLTPGYHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIF 100
>sp|E7Q4T7|CRP1_YEASB Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain FostersB) GN=CRP1 PE=3 SV=1
Length = 465
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 97 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP----SGVYQYRFLVDGLWKY 151
+W +V + G++D+W+ + L ++ K +F I + +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLXNKDDTFQFKFIVDGVWCV 70
Query: 152 APDLPSTQDDDGNVYNILDLQEYV 175
+ +G N L + + V
Sbjct: 71 SDSYKKEHVSEGIENNFLQITDLV 94
>sp|E7NIP0|CRP1_YEASO Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain FostersO) GN=CRP1 PE=3 SV=2
Length = 465
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 97 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP----SGVYQYRFLVDGLWKY 151
+W +V + G++D+W+ + L ++ K +F I + +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVWCV 70
Query: 152 APDLPSTQDDDGNVYNILDLQEYV 175
+ +G N L + + V
Sbjct: 71 SDSYKKEHVSEGIENNFLQITDLV 94
>sp|P38845|CRP1_YEAST Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CRP1 PE=1 SV=1
Length = 465
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 97 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP----SGVYQYRFLVDGLWKY 151
+W +V + G++D+W+ + L ++ K +F I + +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVWCV 70
Query: 152 APDLPSTQDDDGNVYNILDLQEYV 175
+ +G N L + + V
Sbjct: 71 SDSYKKEHVSEGIENNFLQITDLV 94
>sp|A6ZT54|CRP1_YEAS7 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=CRP1 PE=3 SV=1
Length = 465
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 97 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP----SGVYQYRFLVDGLWKY 151
+W +V + G++D+W+ + L ++ K +F I + +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVWCV 70
Query: 152 APDLPSTQDDDGNVYNILDLQEYV 175
+ +G N L + + V
Sbjct: 71 SDSYKKEHVSEGIENNFLQITDLV 94
>sp|E7KDM2|CRP1_YEASA Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain AWRI796) GN=CRP1 PE=3 SV=2
Length = 465
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 97 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP----SGVYQYRFLVDGLWKY 151
+W +V + G++D+W+ + L ++ K +F I + +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVWCV 70
Query: 152 APDLPSTQDDDGNVYNILDLQEYV 175
+ +G N L + + V
Sbjct: 71 SDSYKKEHVSEGIENNFLQITDLV 94
>sp|E7LVH4|CRP1_YEASV Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain VIN 13) GN=CRP1 PE=3 SV=2
Length = 465
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 97 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP----SGVYQYRFLVDGLWKY 151
+W +V + G++D+W+ + L ++ K +F I + +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVWCV 70
Query: 152 APDLPSTQDDDGNVYNILDLQEYV 175
+ +G N L + + V
Sbjct: 71 SDSYKKEHVSEGIENNFLQITDLV 94
>sp|C7GJZ2|CRP1_YEAS2 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain JAY291) GN=CRP1 PE=3 SV=1
Length = 465
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 97 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP----SGVYQYRFLVDGLWKY 151
+W +V + G++D+W+ + L ++ K +F I + +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVWCV 70
Query: 152 APDLPSTQDDDGNVYNILDLQEYV 175
+ +G N L + + V
Sbjct: 71 SDSYKKEHVSEGIENNFLQITDLV 94
>sp|B3LSR0|CRP1_YEAS1 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=CRP1 PE=3 SV=1
Length = 465
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 97 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP----SGVYQYRFLVDGLWKY 151
+W +V + G++D+W+ + L ++ K +F I + +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVWCV 70
Query: 152 APDLPSTQDDDGNVYNILDLQEYV 175
+ +G N L + + V
Sbjct: 71 SDSYKKEHVSEGIENNFLQITDLV 94
>sp|E7KPJ0|CRP1_YEASL Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain Lalvin QA23) GN=CRP1 PE=3 SV=2
Length = 465
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 97 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP----SGVYQYRFLVDGLWKY 151
+W +V + G++D+W+ + L ++ K +F I + +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVWCV 70
Query: 152 APDLPSTQDDDGNVYNILDLQEYV 175
+ +G N L + + V
Sbjct: 71 SDSYKKEHVSEGIENNFLQITDLV 94
>sp|C8Z9U3|CRP1_YEAS8 Cruciform DNA-recognizing protein 1 OS=Saccharomyces cerevisiae
(strain Lalvin EC1118 / Prise de mousse) GN=CRP1 PE=3
SV=1
Length = 465
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 97 ITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP----SGVYQYRFLVDGLWKY 151
+W +V + G++D+W+ + L ++ K +F I + +Q++F+VDG+W
Sbjct: 11 FSWPAGPKDVILTGTFDDWRGTLPLVKTAKGNFEITMPVKLANKDDTFQFKFIVDGVWCV 70
Query: 152 APDLPSTQDDDGNVYNILDLQEYV 175
+ +G N L + + V
Sbjct: 71 SDSYKKEHVSEGIENNFLQITDLV 94
>sp|P32578|SIP1_YEAST SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SIP1 PE=1 SV=2
Length = 815
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 134 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYN 167
LP+G+Y+ +F ++G+ ++ LP+ D +GN N
Sbjct: 523 LPAGIYRLQFSINGILTHSNFLPTATDSEGNFVN 556
>sp|A6ZZ19|SIP1_YEAS7 SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain YJM789) GN=SIP1 PE=3 SV=2
Length = 815
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 134 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYN 167
LP+G+Y+ +F ++G+ ++ LP+ D +GN N
Sbjct: 523 LPAGIYRLQFSINGILTHSNFLPTATDSEGNFVN 556
>sp|B3LFN4|SIP1_YEAS1 SNF1 protein kinase subunit beta-1 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=SIP1 PE=3 SV=2
Length = 815
Score = 34.3 bits (77), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 134 LPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYN 167
LP+G+Y+ +F ++G+ ++ LP+ D +GN N
Sbjct: 523 LPAGIYRLQFSINGILTHSNFLPTATDSEGNFVN 556
>sp|P52979|GLGB_RHIRD 1,4-alpha-glucan branching enzyme GlgB OS=Rhizobium radiobacter
GN=glgB PE=3 SV=2
Length = 734
Score = 32.3 bits (72), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 89 DGVGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVY--QYRFLVD 146
+GV W+ +G V+V G ++NW R + R KD I ++ VY Y+F +
Sbjct: 142 EGVEGFHFAVWAPNGRRVSVVGDFNNWDGRRHVMRFRKDTGIWEIFAPDVYACAYKFEIL 201
Query: 147 G 147
G
Sbjct: 202 G 202
>sp|Q08582|RGYR_SULAC Reverse gyrase OS=Sulfolobus acidocaldarius (strain ATCC 33909 /
DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rgy
PE=1 SV=3
Length = 1248
Score = 31.6 bits (70), Expect = 7.1, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 125 GKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYVPDDLES-IS 183
G+ + ++L V D +K DL + GN+ + D+Q V DD ES +S
Sbjct: 20 GRSISTYRLLLGSVCNICLEEDKEYKNIGDLIKDIEKQGNLIKLKDIQR-VLDDYESFVS 78
Query: 184 SFE-----PPQSPETSYNNLQLTAEDFAKEPPLVPPHLQMTLLNVPAS 226
F PP P+ S+ L+ E FA + PP L T + +S
Sbjct: 79 VFRRLLGFPPFGPQKSWIYRLLSGESFAI---IAPPGLGKTTFGLISS 123
>sp|Q9FEB5|DSP4_ARATH Phosphoglucan phosphatase DSP4, chloroplastic OS=Arabidopsis
thaliana GN=DSP4 PE=1 SV=1
Length = 379
Score = 31.2 bits (69), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 105 EVAVEGSWDNWKTRIALQ-RSGKDFTIMKV-LPSGVYQYRFLVDGLWKY 151
V + G W RI L G F I+K LP G ++Y++++DG W +
Sbjct: 268 RVEISGLDIGWGQRIPLTLDKGTGFWILKRELPEGQFEYKYIIDGEWTH 316
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,442,227
Number of Sequences: 539616
Number of extensions: 5688458
Number of successful extensions: 10334
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 10257
Number of HSP's gapped (non-prelim): 58
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)