Query 023607
Match_columns 280
No_of_seqs 240 out of 848
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 05:18:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1616 Protein involved in Sn 100.0 3.6E-52 7.9E-57 388.5 17.9 240 39-280 25-289 (289)
2 PF04739 AMPKBI: 5'-AMP-activa 100.0 7E-35 1.5E-39 234.2 4.0 87 190-278 2-100 (100)
3 cd02859 AMPKbeta_GBD_like AMP- 99.9 8.3E-26 1.8E-30 173.4 9.9 79 92-170 1-79 (79)
4 cd02861 E_set_proteins_like E 99.8 3.7E-18 8E-23 131.1 9.6 76 93-169 2-81 (82)
5 cd02858 Esterase_N_term Estera 99.1 3.5E-10 7.6E-15 87.7 9.5 75 94-169 7-84 (85)
6 cd02688 E_set E or "early" set 98.7 9.4E-08 2E-12 70.7 8.1 69 94-162 5-76 (83)
7 PF02922 CBM_48: Carbohydrate- 98.3 1.2E-06 2.6E-11 66.5 6.3 56 94-149 12-74 (85)
8 cd02854 Glycogen_branching_enz 98.3 2E-06 4.3E-11 68.9 7.4 63 95-157 7-84 (99)
9 PF00686 CBM_20: Starch bindin 97.5 0.0003 6.4E-09 55.2 7.0 53 93-145 2-68 (96)
10 cd05808 CBM20_alpha_amylase Al 97.4 0.00058 1.3E-08 53.0 6.6 52 94-145 2-63 (95)
11 cd05818 CBM20_water_dikinase P 97.3 0.00098 2.1E-08 52.4 7.3 53 93-145 2-61 (92)
12 cd02860 Pullulanase_N_term Pul 97.3 0.0012 2.5E-08 52.1 7.3 62 95-158 10-84 (100)
13 cd02855 Glycogen_branching_enz 97.3 0.0026 5.6E-08 49.8 9.0 62 95-156 23-93 (106)
14 cd05814 CBM20_Prei4 Prei4, N-t 97.2 0.0022 4.8E-08 52.6 8.5 45 102-146 14-67 (120)
15 COG0296 GlgB 1,4-alpha-glucan 97.1 0.0014 2.9E-08 68.0 7.2 61 94-155 37-107 (628)
16 cd05820 CBM20_novamyl Novamyl 97.0 0.006 1.3E-07 48.8 9.0 53 93-145 3-70 (103)
17 cd05809 CBM20_beta_amylase Bet 97.0 0.004 8.6E-08 49.4 7.5 54 92-145 2-68 (99)
18 PRK12568 glycogen branching en 96.9 0.0025 5.4E-08 67.2 7.5 63 94-157 139-210 (730)
19 PRK12313 glycogen branching en 96.9 0.0029 6.2E-08 65.4 7.6 63 94-156 39-109 (633)
20 cd02856 Glycogen_debranching_e 96.7 0.007 1.5E-07 48.1 7.4 52 95-148 11-67 (103)
21 cd02852 Isoamylase_N_term Isoa 96.7 0.0067 1.4E-07 49.2 7.0 56 95-152 9-75 (119)
22 cd05813 CBM20_genethonin_1 Gen 96.7 0.0058 1.2E-07 47.9 6.3 52 94-145 2-62 (95)
23 PRK14705 glycogen branching en 96.6 0.0041 8.9E-08 68.8 7.2 61 94-155 639-709 (1224)
24 cd05811 CBM20_glucoamylase Glu 96.6 0.0079 1.7E-07 47.9 6.9 55 91-145 5-73 (106)
25 PLN02447 1,4-alpha-glucan-bran 96.6 0.0043 9.4E-08 65.6 6.8 61 94-155 115-190 (758)
26 PRK14706 glycogen branching en 96.5 0.0062 1.4E-07 63.3 7.0 62 94-156 39-109 (639)
27 cd05807 CBM20_CGTase CGTase, C 96.4 0.017 3.7E-07 45.8 7.6 54 92-145 2-70 (101)
28 cd05810 CBM20_alpha_MTH Glucan 96.3 0.013 2.9E-07 46.4 6.6 53 93-145 1-64 (97)
29 PRK05402 glycogen branching en 96.2 0.014 2.9E-07 61.5 7.6 62 94-155 132-202 (726)
30 cd05467 CBM20 The family 20 ca 96.1 0.014 3.1E-07 45.0 5.4 45 101-145 11-65 (96)
31 cd05816 CBM20_DPE2_repeat2 Dis 96.0 0.024 5.2E-07 44.9 6.4 44 102-145 13-64 (99)
32 cd05817 CBM20_DSP Dual-specifi 96.0 0.032 6.9E-07 44.3 7.1 45 101-145 11-62 (100)
33 cd02853 MTHase_N_term Maltooli 95.5 0.051 1.1E-06 41.6 6.2 59 95-157 10-71 (85)
34 TIGR01515 branching_enzym alph 95.4 0.039 8.5E-07 57.0 7.2 62 94-156 29-100 (613)
35 TIGR02402 trehalose_TreZ malto 95.3 0.065 1.4E-06 54.7 8.3 59 95-158 1-63 (542)
36 PRK05402 glycogen branching en 95.0 0.065 1.4E-06 56.5 7.5 60 94-154 29-94 (726)
37 PF03423 CBM_25: Carbohydrate 95.0 0.13 2.8E-06 40.2 7.3 54 94-147 3-70 (87)
38 cd05806 CBM20_laforin Laforin 94.4 0.21 4.5E-06 41.2 7.4 48 98-145 10-74 (112)
39 cd05815 CBM20_DPE2_repeat1 Dis 94.2 0.23 4.9E-06 39.2 7.2 44 102-145 12-65 (101)
40 TIGR02104 pulA_typeI pullulana 93.1 0.28 6E-06 50.7 7.4 62 95-157 21-93 (605)
41 PF11806 DUF3327: Domain of un 91.7 1.5 3.2E-05 36.5 8.7 81 94-174 3-115 (122)
42 PLN02960 alpha-amylase 91.5 0.21 4.5E-06 54.0 4.3 53 94-146 129-198 (897)
43 PLN02950 4-alpha-glucanotransf 90.6 1.4 2.9E-05 48.1 9.4 67 88-154 148-231 (909)
44 PLN02950 4-alpha-glucanotransf 89.1 2.1 4.7E-05 46.6 9.5 56 90-145 6-74 (909)
45 PRK10439 enterobactin/ferric e 88.9 2.2 4.8E-05 42.2 8.8 87 90-176 36-166 (411)
46 TIGR02100 glgX_debranch glycog 86.8 1.6 3.5E-05 46.0 6.8 53 95-149 16-75 (688)
47 PF01357 Pollen_allerg_1: Poll 86.6 2.2 4.7E-05 33.0 5.7 60 90-152 11-77 (82)
48 PLN02316 synthase/transferase 86.6 3.6 7.9E-05 45.5 9.4 60 89-148 325-399 (1036)
49 TIGR02102 pullulan_Gpos pullul 85.6 3.5 7.6E-05 46.0 8.8 62 95-156 329-406 (1111)
50 PLN02316 synthase/transferase 85.2 1.7 3.7E-05 48.0 6.1 59 94-152 155-226 (1036)
51 cd02857 CD_pullulan_degrading_ 84.6 6.7 0.00014 30.7 7.8 55 91-145 16-79 (116)
52 PRK03705 glycogen debranching 81.8 4.1 8.8E-05 43.0 7.0 53 95-149 21-78 (658)
53 TIGR02103 pullul_strch alpha-1 78.2 5.9 0.00013 43.3 7.0 77 94-172 136-228 (898)
54 PF02903 Alpha-amylase_N: Alph 75.2 14 0.0003 29.9 6.9 56 90-145 20-87 (120)
55 PLN03244 alpha-amylase; Provis 74.1 2.9 6.3E-05 45.1 3.3 52 95-146 134-201 (872)
56 COG3794 PetE Plastocyanin [Ene 71.8 11 0.00025 31.8 5.8 48 94-143 63-112 (128)
57 PRK14510 putative bifunctional 71.5 8.7 0.00019 43.3 6.4 53 95-149 25-84 (1221)
58 PLN02877 alpha-amylase/limit d 68.7 35 0.00075 37.9 10.0 51 94-146 223-280 (970)
59 PF03370 CBM_21: Putative phos 66.0 25 0.00054 28.4 6.5 63 90-152 18-105 (113)
60 PRK10785 maltodextrin glucosid 49.5 80 0.0017 32.8 8.4 59 90-148 18-87 (598)
61 KOG0045 Cytosolic Ca2+-depende 47.7 15 0.00032 38.6 2.8 26 135-160 115-143 (612)
62 KOG0470 1,4-alpha-glucan branc 46.3 14 0.00031 39.5 2.4 39 95-133 115-157 (757)
63 PF11896 DUF3416: Domain of un 45.9 49 0.0011 29.6 5.5 53 91-152 41-99 (187)
64 TIGR03009 plancto_dom_2 Planct 42.2 29 0.00062 31.7 3.4 17 143-159 66-85 (210)
65 TIGR02657 amicyanin amicyanin. 41.3 53 0.0011 24.8 4.3 48 94-142 20-69 (83)
66 TIGR02375 pseudoazurin pseudoa 38.3 87 0.0019 25.8 5.4 47 94-142 24-71 (116)
67 PF03422 CBM_6: Carbohydrate b 36.4 42 0.00092 26.5 3.3 21 128-148 91-111 (125)
68 COG3397 Uncharacterized protei 31.5 2E+02 0.0043 27.9 7.3 70 94-172 115-206 (308)
69 PF13473 Cupredoxin_1: Cupredo 31.2 94 0.002 24.2 4.4 48 90-142 40-91 (104)
70 PLN00115 pollen allergen group 29.0 1.6E+02 0.0036 24.5 5.6 50 100-151 44-97 (118)
71 smart00230 CysPc Calpain-like 28.6 56 0.0012 31.1 3.2 25 134-158 98-125 (318)
72 smart00606 CBD_IV Cellulose Bi 28.2 59 0.0013 26.0 2.9 18 130-147 101-118 (129)
73 TIGR03503 conserved hypothetic 27.0 1.1E+02 0.0023 30.6 4.8 24 125-148 170-195 (374)
74 PRK00446 cyaY frataxin-like pr 26.9 85 0.0018 25.5 3.5 35 119-154 48-82 (105)
75 TIGR03102 halo_cynanin halocya 26.3 2.2E+02 0.0047 23.4 5.9 47 94-142 51-99 (115)
76 cd00503 Frataxin Frataxin is a 24.9 40 0.00087 27.3 1.3 20 134-154 64-83 (105)
77 PF01491 Frataxin_Cyay: Fratax 24.4 1.3E+02 0.0028 24.3 4.2 34 120-154 52-86 (109)
78 cd00044 CysPc Calpains, domain 23.6 76 0.0017 29.9 3.1 25 134-158 106-133 (315)
79 TIGR03422 mito_frataxin fratax 23.4 51 0.0011 26.5 1.6 18 136-154 66-83 (97)
80 PLN03023 Expansin-like B1; Pro 23.1 1.7E+02 0.0038 27.4 5.3 51 92-146 161-216 (247)
81 COG1477 ApbE Membrane-associat 21.7 1.7E+02 0.0038 28.6 5.2 49 104-152 202-260 (337)
82 PF14347 DUF4399: Domain of un 21.4 1.5E+02 0.0032 23.3 3.8 31 126-157 51-81 (87)
83 PF08308 PEGA: PEGA domain; I 20.6 2.5E+02 0.0053 20.1 4.7 42 96-148 5-46 (71)
No 1
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.6e-52 Score=388.49 Aligned_cols=240 Identities=40% Similarity=0.650 Sum_probs=211.7
Q ss_pred CCCCCCCCCCCCCCCccCCCCcccCCCCCCCCCCCccccccccC-CCCCCCCCcceeEEEEecCCCceEEEEecCCCCcc
Q 023607 39 GQSPPHSPRATHSPLMFTPQVPVVPLQRPDEMQIPNLSWMQTSS-GYEDMGDGVGIPTMITWSHDGCEVAVEGSWDNWKT 117 (280)
Q Consensus 39 ~~~~p~~~~~~~~p~~f~~q~p~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vpv~f~W~~gg~~V~V~GSFnnW~~ 117 (280)
+...+...+.-....+|.|+.+..+..++.+.......|.+... .+........+||+|+|.++++.|||+|+|+||+.
T Consensus 25 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~ 104 (289)
T KOG1616|consen 25 GSHKPGSERKIPSNSGFSPDDPDPPSTRDEKERIDEGSWSQSQTGEDNEKDREQGRPTVIRWSQGGKEVYVDGSFGNWKT 104 (289)
T ss_pred CCCCCCCccccccccccCCcCCCCCcCcccccccccccccccccccccccccccCCceEEEecCCCceEEEecccccccc
Confidence 33333344443334488999999999998888888888887764 46666668899999999999999999999999999
Q ss_pred ceeeeecCCc---EEEEEEcCCceEEEEEEEcCeeccCCCCCceeCCCCceeceEecccCC--CCccccccCC-------
Q 023607 118 RIALQRSGKD---FTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILDLQEYV--PDDLESISSF------- 185 (280)
Q Consensus 118 ~i~L~ks~~~---f~~~l~Lp~G~y~YKFiVDG~W~~dp~~P~~~D~~G~~nNvI~V~~~~--pe~~~s~~~~------- 185 (280)
+++|.++++. |+++++|++|.|+|||+|||+|++|+++|++.|..|++||+|+|.+.+ .+.++.+.++
T Consensus 105 ~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~~v~~~~~~l~~~~~~~~~~ 184 (289)
T KOG1616|consen 105 KIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPDEVFEVFQALEEDLPSSNHS 184 (289)
T ss_pred cccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCccccchhhhhhhhhccccccc
Confidence 9999998776 999999999999999999999999999999999999999999999988 8877777665
Q ss_pred ---CCCCCC-------CCCCccccCCccccCCC--CCCCChhhhhhccCCCCCCCCCCCCCCCCCeeeecceEeecccCC
Q 023607 186 ---EPPQSP-------ETSYNNLQLTAEDFAKE--PPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSG 253 (280)
Q Consensus 186 ---~~p~sp-------~~sY~~~~p~~~~~~k~--PP~LPphL~~~iLN~~~~~~~d~~~Lp~P~HVvLNHLy~~sik~~ 253 (280)
+.+..+ .++|+|+.|..+++.+. ||.|||||.++|||+.+..+|++..|++|+||+|||||+++| +
T Consensus 185 ~s~e~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~p~lpp~l~~v~lnk~~~~~~~~~~~~~p~hv~lnhl~~~si--k 262 (289)
T KOG1616|consen 185 ESSEVPNLPEELEAKPLGSYTQEKPAVEDEEKAMAPPVLPPHLLQVILNKDTQVSCDPALLPEPNHVALNHLYALSI--K 262 (289)
T ss_pred cccccCCCccccccccccccccccchhhcchhcccCCCCCcchheeeccccccccccccccCCccchhhhhhhhhcc--C
Confidence 555555 89999999998887766 999999999999999999999999999999999999999998 5
Q ss_pred CcEEEEeeeeeecceeeEEEEeeecCC
Q 023607 254 PSVVALGSTHRFLAKYVTVVLYKSMQR 280 (280)
Q Consensus 254 ~~vlal~~T~Ryk~KyvTtvlYkp~~~ 280 (280)
+++++|++||||++||||++||||+++
T Consensus 263 ~~~~~~~~~~r~~~k~vt~~lyk~~~~ 289 (289)
T KOG1616|consen 263 DGVMVLSFTHRYKKKYVTTGLYKPLQL 289 (289)
T ss_pred CCeeEecceecccccceeEEeeeeccC
Confidence 799999999999999999999999975
No 2
>PF04739 AMPKBI: 5'-AMP-activated protein kinase beta subunit, interation domain; InterPro: IPR006828 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This interaction domain is found in the beta subunit of the 5-AMP-activated protein kinase complex, and its yeast homologues Sip1, Sip2 and Gal83, which are found in the SNF1 kinase complex []. This region is sufficient for interaction of this subunit with the kinase complex, but is not solely responsible for the interaction, and the interaction partner is not known []. The isoamylase domain (IPR004193 from INTERPRO) is sometimes found associated with proteins that contain this C-terminal domain.; GO: 0005515 protein binding; PDB: 2QRE_D 2OOY_B 2OOX_B 2QRD_D 2QR1_D 2QRC_D 1Z0N_C 4EAK_B 4EAL_B 4EAG_B ....
Probab=100.00 E-value=7e-35 Score=234.19 Aligned_cols=87 Identities=56% Similarity=0.881 Sum_probs=66.1
Q ss_pred CCCCCCccccCCc------------cccCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCCeeeecceEeecccCCCcEE
Q 023607 190 SPETSYNNLQLTA------------EDFAKEPPLVPPHLQMTLLNVPASYMEIPPPLSRPQHVVLNHLYMQKGKSGPSVV 257 (280)
Q Consensus 190 sp~~sY~~~~p~~------------~~~~k~PP~LPphL~~~iLN~~~~~~~d~~~Lp~P~HVvLNHLy~~sik~~~~vl 257 (280)
+|+++|++++|.. ++|+++||.||+||+++|||++....||++.|++|+||||||||+++|| ++||
T Consensus 2 ~p~~~ys~~iP~~~~~~~~~~~~~~~~~~~~PP~lPp~L~~~iLN~~~~~~~~~~~Lp~P~HV~LNHL~~~~ik--~~v~ 79 (100)
T PF04739_consen 2 SPESSYSSEIPENLQDDDEFEEQPEEEFAKEPPSLPPHLQKTILNKPSSSTDDPSVLPIPNHVVLNHLYTSSIK--DGVL 79 (100)
T ss_dssp -----EESS--HCCCSCCCCCHHH--TCCCS--BS-GGGCSEECCSCTCHHSHTTB-----GGGTTBEEEEEEB--TTEE
T ss_pred CCCcCccccCCccccchhhhhhhhcccccCCCCCCChhhCeeccCCCCcccCccccCCCCCEEEecceEEcccC--CCeE
Confidence 5678899888753 5889999999999999999999888899999999999999999999985 7999
Q ss_pred EEeeeeeecceeeEEEEeeec
Q 023607 258 ALGSTHRFLAKYVTVVLYKSM 278 (280)
Q Consensus 258 al~~T~Ryk~KyvTtvlYkp~ 278 (280)
|||+|||||+||||||||||+
T Consensus 80 al~~T~Ryk~KyVT~vlYkP~ 100 (100)
T PF04739_consen 80 ALGTTHRYKSKYVTTVLYKPI 100 (100)
T ss_dssp EEEEEEEETTEEEEEEEEEE-
T ss_pred EEEEEEEecceEEEEEEecCC
Confidence 999999999999999999996
No 3
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.93 E-value=8.3e-26 Score=173.43 Aligned_cols=79 Identities=52% Similarity=1.028 Sum_probs=75.5
Q ss_pred ceeEEEEecCCCceEEEEecCCCCccceeeeecCCcEEEEEEcCCceEEEEEEEcCeeccCCCCCceeCCCCceeceEe
Q 023607 92 GIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNILD 170 (280)
Q Consensus 92 ~vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~ks~~~f~~~l~Lp~G~y~YKFiVDG~W~~dp~~P~~~D~~G~~nNvI~ 170 (280)
++||+|+|.+++++|+|+|||++|+..++|.|+++.|++++.|++|.|+|||+|||+|++|+++|++.|+.|+.||+|+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~~~~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~ 79 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSGKGFSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID 79 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECCCCcEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence 4789999999999999999999999879999988779999999999999999999999999999999999999999985
No 4
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.76 E-value=3.7e-18 Score=131.10 Aligned_cols=76 Identities=28% Similarity=0.643 Sum_probs=68.3
Q ss_pred eeEEEEecCC-CceEEEEecCCCCccceeeeecC-CcEEEEEEcCCceEEEEEEEcCeec-cCCCCCc-eeCCCCceece
Q 023607 93 IPTMITWSHD-GCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPSGVYQYRFLVDGLWK-YAPDLPS-TQDDDGNVYNI 168 (280)
Q Consensus 93 vpv~f~W~~g-g~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l~Lp~G~y~YKFiVDG~W~-~dp~~P~-~~D~~G~~nNv 168 (280)
++++|+|.+. +++|+|+|+|++|+ .++|+|.+ +.|++++.|++|.|+|||+|||.|. .||..+. ..|..|+.||+
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~-~~~m~~~~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v 80 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWN-AIPMEREGDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAV 80 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCC-cccCEECCCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceE
Confidence 5799998875 59999999999998 47899876 6899999999999999999999998 9999986 67889999988
Q ss_pred E
Q 023607 169 L 169 (280)
Q Consensus 169 I 169 (280)
|
T Consensus 81 ~ 81 (82)
T cd02861 81 F 81 (82)
T ss_pred c
Confidence 7
No 5
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.14 E-value=3.5e-10 Score=87.73 Aligned_cols=75 Identities=24% Similarity=0.444 Sum_probs=61.2
Q ss_pred eEEEE-ecCCCceEEEEecCCCCccceeeeecC-CcEEEEE-EcCCceEEEEEEEcCeeccCCCCCceeCCCCceeceE
Q 023607 94 PTMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMK-VLPSGVYQYRFLVDGLWKYAPDLPSTQDDDGNVYNIL 169 (280)
Q Consensus 94 pv~f~-W~~gg~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l-~Lp~G~y~YKFiVDG~W~~dp~~P~~~D~~G~~nNvI 169 (280)
.++|+ |...+++|.|.|+|++|.. .+|.+.+ +.|++++ .|.+|.|+|+|+|||.|+.||..+...-..+...|++
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~~ 84 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKDEAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSGV 84 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeECCCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeecccccceee
Confidence 37785 8889999999999998875 7898865 5799988 4888899999999999999999988664455544443
No 6
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.69 E-value=9.4e-08 Score=70.73 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=56.5
Q ss_pred eEEEE-ecCCCceEEEEecCCCCccceeeeecC-CcEEEEEEcCC-ceEEEEEEEcCeeccCCCCCceeCCC
Q 023607 94 PTMIT-WSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKVLPS-GVYQYRFLVDGLWKYAPDLPSTQDDD 162 (280)
Q Consensus 94 pv~f~-W~~gg~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l~Lp~-G~y~YKFiVDG~W~~dp~~P~~~D~~ 162 (280)
.++|+ |...+++|.|.+.|++|...++|.+.. +.|++.+.+.. +.|.|+|+|||.|.+++.++...+..
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~ 76 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKVEDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGG 76 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEECCCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCC
Confidence 47786 556789999999999976678898764 68999999887 99999999999999988775544433
No 7
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.35 E-value=1.2e-06 Score=66.52 Aligned_cols=56 Identities=20% Similarity=0.460 Sum_probs=44.6
Q ss_pred eEEE-EecCCCceEEEEecCCC-Ccc-ceeeee--cCCcEEEEEE--cCCceEEEEEEEcCee
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDN-WKT-RIALQR--SGKDFTIMKV--LPSGVYQYRFLVDGLW 149 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnn-W~~-~i~L~k--s~~~f~~~l~--Lp~G~y~YKFiVDG~W 149 (280)
-++| .|...+++|.|.+.|++ |.. .++|.+ .++.|++++. +++|.+.|+|+||+..
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 4777 49999999999999999 875 578984 4578999998 8888888888888654
No 8
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.33 E-value=2e-06 Score=68.94 Aligned_cols=63 Identities=21% Similarity=0.433 Sum_probs=47.3
Q ss_pred EEE-EecCCCceEEEEecCCCCcc-ceeeeec-CCcEEEEEEc--------CCc-eEEEEEEE-cCee--ccCCCCCc
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS-GKDFTIMKVL--------PSG-VYQYRFLV-DGLW--KYAPDLPS 157 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~~-~i~L~ks-~~~f~~~l~L--------p~G-~y~YKFiV-DG~W--~~dp~~P~ 157 (280)
++| .|...+++|+|+|+||+|+. ..+|.|. .+.|++.+.. +.| .|+|++.. ||+| +.||-.-.
T Consensus 7 ~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~~ 84 (99)
T cd02854 7 VTYREWAPNAEEVYLIGDFNNWDRNAHPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIKY 84 (99)
T ss_pred EEEEEECCCCCEEEEEccCCCCCCcCcccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCcceeE
Confidence 677 59999999999999999986 4679885 4689998763 455 56666666 7875 56665444
No 9
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.55 E-value=0.0003 Score=55.21 Aligned_cols=53 Identities=23% Similarity=0.495 Sum_probs=43.7
Q ss_pred eeEEEEecC---CCceEEEEecCC---CCcc--ceeeeecC-----CcEEEEEEcCCc-eEEEEEEE
Q 023607 93 IPTMITWSH---DGCEVAVEGSWD---NWKT--RIALQRSG-----KDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 93 vpv~f~W~~---gg~~V~V~GSFn---nW~~--~i~L~ks~-----~~f~~~l~Lp~G-~y~YKFiV 145 (280)
|.|+|+-.. .|+.|+|+||.. +|+. .++|.... ..|++.+.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 567776643 589999999997 8996 67888742 579999999988 69999999
No 10
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.38 E-value=0.00058 Score=53.02 Aligned_cols=52 Identities=23% Similarity=0.388 Sum_probs=39.8
Q ss_pred eEEEEec---CCCceEEEEec---CCCCcc--ceeeeec-CCcEEEEEEcCCc-eEEEEEEE
Q 023607 94 PTMITWS---HDGCEVAVEGS---WDNWKT--RIALQRS-GKDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 94 pv~f~W~---~gg~~V~V~GS---FnnW~~--~i~L~ks-~~~f~~~l~Lp~G-~y~YKFiV 145 (280)
+++|.-. ..|++|+|+|+ +.+|+. .++|... ++.|++.+.||.+ .++|||++
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEEE
Confidence 4555432 35899999995 779986 3578764 4579999999987 79999997
No 11
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.32 E-value=0.00098 Score=52.36 Aligned_cols=53 Identities=23% Similarity=0.495 Sum_probs=43.0
Q ss_pred eeEEEEecC---CCceEEEEecC---CCCccceeeeecCCcEEEEEEcCCc-eEEEEEEE
Q 023607 93 IPTMITWSH---DGCEVAVEGSW---DNWKTRIALQRSGKDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 93 vpv~f~W~~---gg~~V~V~GSF---nnW~~~i~L~ks~~~f~~~l~Lp~G-~y~YKFiV 145 (280)
+.++|+-.. -|+.++|+|+- -+|+...+|.-..+.|++.+.|+.+ ..+|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWTENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccCCCCEEEEEEeCCCCcEEEEEEE
Confidence 456665543 48899999987 4899877787766789999999987 79999999
No 12
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.27 E-value=0.0012 Score=52.11 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=46.9
Q ss_pred EEE-EecCCCceEEEEecCCCCc-----cceeeee-cCCcEEEEEE-cCCceEEEEEEEcCe-----eccCCCCCce
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWK-----TRIALQR-SGKDFTIMKV-LPSGVYQYRFLVDGL-----WKYAPDLPST 158 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~-----~~i~L~k-s~~~f~~~l~-Lp~G~y~YKFiVDG~-----W~~dp~~P~~ 158 (280)
+.| .|...+++|.|.. |++|. ..++|.+ .++.|++.+. +..|. .|+|.|+|. .+.||.....
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g~-~Y~y~i~~~~~~~~~~~DPyA~~~ 84 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKRGENGVWSVTLDGDLEGY-YYLYEVKVYKGETNEVVDPYAKAL 84 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeecCCCCEEEEEeCCccCCc-EEEEEEEEeceEEEEEcCcccEeE
Confidence 678 6999999999998 88886 4578988 4578999886 45565 488888775 6777755543
No 13
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.25 E-value=0.0026 Score=49.77 Aligned_cols=62 Identities=24% Similarity=0.505 Sum_probs=41.7
Q ss_pred EEE-EecCCCceEEEEecCCCCcc-ceeeeec--CCcEEEEEE-cCCc-eEEEEEEEc-Ce--eccCCCCC
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS--GKDFTIMKV-LPSG-VYQYRFLVD-GL--WKYAPDLP 156 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~~-~i~L~ks--~~~f~~~l~-Lp~G-~y~YKFiVD-G~--W~~dp~~P 156 (280)
++| .|..++++|.|.++|++|.. ..+|.+. .+.|.+.+. +..| .|+|++..+ |. .+.||...
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~ 93 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRGDSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAF 93 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECCCCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCce
Confidence 566 59999999999999999964 4578874 457888775 5566 444444443 33 34455443
No 14
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.20 E-value=0.0022 Score=52.60 Aligned_cols=45 Identities=36% Similarity=0.633 Sum_probs=38.2
Q ss_pred CCceEEEEec---CCCCcc--ceeeeec---CCcEEEEEEcCCc-eEEEEEEEc
Q 023607 102 DGCEVAVEGS---WDNWKT--RIALQRS---GKDFTIMKVLPSG-VYQYRFLVD 146 (280)
Q Consensus 102 gg~~V~V~GS---FnnW~~--~i~L~ks---~~~f~~~l~Lp~G-~y~YKFiVD 146 (280)
.|+.|+|+|+ +.+|+. ..+|.+. ++.|++.+.||.+ .++|||++.
T Consensus 14 ~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 14 PGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred CCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 5899999998 889985 4678775 3579999999988 899999994
No 15
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.06 E-value=0.0014 Score=68.01 Aligned_cols=61 Identities=16% Similarity=0.439 Sum_probs=47.4
Q ss_pred eEEE-EecCCCceEEEEecCCCCcc-ceeeee--cCCcEEEEEE-cCCceEEEEEEEcCee-----ccCCCC
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQR--SGKDFTIMKV-LPSGVYQYRFLVDGLW-----KYAPDL 155 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~~-~i~L~k--s~~~f~~~l~-Lp~G~y~YKFiVDG~W-----~~dp~~ 155 (280)
.|.| .|...++.|.|.|+||+|.. +.+|.. ..+.|.+.+. +++| ++|||.|++.. +.||..
T Consensus 37 ~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a 107 (628)
T COG0296 37 GVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDRKESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYA 107 (628)
T ss_pred ceEEEEECCCCCeEEEEeecCCccceecccccCCCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchh
Confidence 5788 59999999999999999997 233432 2357999998 9999 89999997543 666644
No 16
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.00 E-value=0.006 Score=48.85 Aligned_cols=53 Identities=28% Similarity=0.515 Sum_probs=42.3
Q ss_pred eeEEEEecC-----CCceEEEEecCC---CCccce-----eeeec-CCcEEEEEEcCCc-eEEEEEEE
Q 023607 93 IPTMITWSH-----DGCEVAVEGSWD---NWKTRI-----ALQRS-GKDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 93 vpv~f~W~~-----gg~~V~V~GSFn---nW~~~i-----~L~ks-~~~f~~~l~Lp~G-~y~YKFiV 145 (280)
||++|+-.. -|++|+|+|+-. +|+... +|... ...|++.+.||.| ..+|||++
T Consensus 3 ~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 3 IPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred ccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 789999863 478999999765 899732 56543 3579999999998 79999998
No 17
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=96.95 E-value=0.004 Score=49.40 Aligned_cols=54 Identities=22% Similarity=0.432 Sum_probs=41.1
Q ss_pred ceeEEEEecC----CCceEEEEe---cCCCCccce-eeee--c--CCcEEEEEEcCCc-eEEEEEEE
Q 023607 92 GIPTMITWSH----DGCEVAVEG---SWDNWKTRI-ALQR--S--GKDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 92 ~vpv~f~W~~----gg~~V~V~G---SFnnW~~~i-~L~k--s--~~~f~~~l~Lp~G-~y~YKFiV 145 (280)
-|+|+|+-.. .|++|+|+| ++.+|+... +|.. . ...|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4788888632 489999999 567998632 2322 1 3579999999998 79999999
No 18
>PRK12568 glycogen branching enzyme; Provisional
Probab=96.88 E-value=0.0025 Score=67.17 Aligned_cols=63 Identities=22% Similarity=0.497 Sum_probs=47.3
Q ss_pred eEEE-EecCCCceEEEEecCCCCcc-ceeeee-cCCcEEEEEE-cCCceEEEEEEE---cCee--ccCCCCCc
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQR-SGKDFTIMKV-LPSGVYQYRFLV---DGLW--KYAPDLPS 157 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~~-~i~L~k-s~~~f~~~l~-Lp~G~y~YKFiV---DG~W--~~dp~~P~ 157 (280)
-|.| +|...+++|+|+|+||+|.. ..+|.+ .++.|++.+. +..| ..|||.| ||++ +.||....
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~ 210 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQRIGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQ 210 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccCCCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceE
Confidence 4688 69999999999999999986 467876 4568999884 6677 3566666 7865 45765443
No 19
>PRK12313 glycogen branching enzyme; Provisional
Probab=96.86 E-value=0.0029 Score=65.36 Aligned_cols=63 Identities=24% Similarity=0.430 Sum_probs=46.2
Q ss_pred eEEE-EecCCCceEEEEecCCCCcc-ceeeeec-CCcEEEEEE-cCCc-eEEEEEEE-cCee--ccCCCCC
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS-GKDFTIMKV-LPSG-VYQYRFLV-DGLW--KYAPDLP 156 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~~-~i~L~ks-~~~f~~~l~-Lp~G-~y~YKFiV-DG~W--~~dp~~P 156 (280)
-|+| .|...+++|+|+|+|++|.. ..+|.+. ++.|.+.+. +..| .|+|++.+ ||.| +.||...
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~ 109 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRRESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAF 109 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCcccccccccCCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceE
Confidence 4778 58889999999999999986 4678884 468999887 4455 56666654 5665 4555443
No 20
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.74 E-value=0.007 Score=48.06 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=40.5
Q ss_pred EEE-EecCCCceEEEEecCCCCc--cceeeeec-CCcEEEEEE-cCCceEEEEEEEcCe
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWK--TRIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGL 148 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~--~~i~L~ks-~~~f~~~l~-Lp~G~y~YKFiVDG~ 148 (280)
+.| .|...+++|.|.. |++|. ..++|.+. ++.|.+.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEEYGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccccCCEEEEEECCCCCCC-EEEEEECCc
Confidence 567 6998999999998 66664 35789875 468999884 56665 799999994
No 21
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.68 E-value=0.0067 Score=49.24 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=42.9
Q ss_pred EEE-EecCCCceEEEEecCCCCc---c--ceeeeec----CCcEEEEEE-cCCceEEEEEEEcCeeccC
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWK---T--RIALQRS----GKDFTIMKV-LPSGVYQYRFLVDGLWKYA 152 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~---~--~i~L~ks----~~~f~~~l~-Lp~G~y~YKFiVDG~W~~d 152 (280)
+.| .|...+++|.|.. |++|. . +++|.+. ++.|++.+. +..|. .|+|.|||.|.-+
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~ 75 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE 75 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence 677 6999999999999 88886 2 4567653 478998874 66776 7999999975433
No 22
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.66 E-value=0.0058 Score=47.85 Aligned_cols=52 Identities=23% Similarity=0.372 Sum_probs=39.9
Q ss_pred eEEEEe--c--CCCceEEEEecCC---CCccceeeeec-CCcEEEEEEcCCc-eEEEEEEE
Q 023607 94 PTMITW--S--HDGCEVAVEGSWD---NWKTRIALQRS-GKDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 94 pv~f~W--~--~gg~~V~V~GSFn---nW~~~i~L~ks-~~~f~~~l~Lp~G-~y~YKFiV 145 (280)
+++|+- . .+++.|+|+|+-. +|+...+|... ...|++.+.||.+ ..+|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 455544 2 2568899999664 79987888764 4579999999988 59999998
No 23
>PRK14705 glycogen branching enzyme; Provisional
Probab=96.65 E-value=0.0041 Score=68.82 Aligned_cols=61 Identities=21% Similarity=0.516 Sum_probs=46.3
Q ss_pred eEEE-EecCCCceEEEEecCCCCcc-ceeeee--cCCcEEEEEE-cCCceEEEEEEEc---Cee--ccCCCC
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQR--SGKDFTIMKV-LPSGVYQYRFLVD---GLW--KYAPDL 155 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~~-~i~L~k--s~~~f~~~l~-Lp~G~y~YKFiVD---G~W--~~dp~~ 155 (280)
-|.| +|...+++|+|+|+||+|.. ..+|.+ ..+.|++.+. +.+|. .|||.|+ |+| +.||..
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA 709 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSLGSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA 709 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceECCCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence 5678 69999999999999999986 457887 3478999874 77885 6888884 544 455543
No 24
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.61 E-value=0.0079 Score=47.85 Aligned_cols=55 Identities=25% Similarity=0.516 Sum_probs=42.3
Q ss_pred cceeEEEEec---CCCceEEEEecCC---CCcc--ceeeeec-----CCcEEEEEEcCCc-eEEEEEEE
Q 023607 91 VGIPTMITWS---HDGCEVAVEGSWD---NWKT--RIALQRS-----GKDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 91 ~~vpv~f~W~---~gg~~V~V~GSFn---nW~~--~i~L~ks-----~~~f~~~l~Lp~G-~y~YKFiV 145 (280)
..+.++|.-. .-|+.|+|+|+-. +|+. .+.|... +..|++.+.||.+ .++|||+|
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 4567777653 3589999999864 7996 4567642 3679999999988 59999997
No 25
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.60 E-value=0.0043 Score=65.64 Aligned_cols=61 Identities=15% Similarity=0.349 Sum_probs=44.8
Q ss_pred eEEE-EecCCCceEEEEecCCCCcc-ceeeeecC-CcEEEEEE-------cCCceEEEEEEEc---Ce--eccCCCC
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRSG-KDFTIMKV-------LPSGVYQYRFLVD---GL--WKYAPDL 155 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~~-~i~L~ks~-~~f~~~l~-------Lp~G~y~YKFiVD---G~--W~~dp~~ 155 (280)
-|+| +|...+++|+|+|+||+|+. ..+|+|.+ +.|++.|. ++.|. .|||.|. |+ ++.||-.
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~~~GvWe~~ip~~~g~~~~~~G~-~Yky~i~~~~g~~~~r~dpya 190 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKNEFGVWEIFLPDADGSPAIPHGS-RVKIRMETPDGRWVDRIPAWI 190 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeCCCCEEEEEECCccccccCCCCC-EEEEEEEeCCCcEEeecCchH
Confidence 4677 59999999999999999986 45898854 68999875 33443 6777774 54 4566643
No 26
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.48 E-value=0.0062 Score=63.34 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=46.0
Q ss_pred eEEE-EecCCCceEEEEecCCCCcc-ceeeeec-CCcEEEEEE-cCCceEEEEEEEcC---ee--ccCCCCC
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS-GKDFTIMKV-LPSGVYQYRFLVDG---LW--KYAPDLP 156 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~~-~i~L~ks-~~~f~~~l~-Lp~G~y~YKFiVDG---~W--~~dp~~P 156 (280)
-|+| +|...+++|+|+|+||+|.. ..+|.+. .+.|.+.+. +..| ..|||.|++ .+ +.||..-
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~ 109 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRLDFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGS 109 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCcccccccccccCCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceE
Confidence 3778 59999999999999999986 4588875 468998875 3445 468888865 33 5666543
No 27
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.41 E-value=0.017 Score=45.80 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=40.4
Q ss_pred ceeEEEEec-C---CCceEEEEecCC---CCccce--eee-e----cCCcEEEEEEcCCc-eEEEEEEE
Q 023607 92 GIPTMITWS-H---DGCEVAVEGSWD---NWKTRI--ALQ-R----SGKDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 92 ~vpv~f~W~-~---gg~~V~V~GSFn---nW~~~i--~L~-k----s~~~f~~~l~Lp~G-~y~YKFiV 145 (280)
.|+++|+-. . -|++|+|+|+-. +|+... .|. . ....|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 367888764 2 489999999764 899643 222 1 23479999999998 79999998
No 28
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.33 E-value=0.013 Score=46.45 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=39.7
Q ss_pred eeEEEEe----cCCCceEEEEecCC---CCcc--ceeeeecC-CcEEEEEEcCCc-eEEEEEEE
Q 023607 93 IPTMITW----SHDGCEVAVEGSWD---NWKT--RIALQRSG-KDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 93 vpv~f~W----~~gg~~V~V~GSFn---nW~~--~i~L~ks~-~~f~~~l~Lp~G-~y~YKFiV 145 (280)
|+++|.- ..-|+.|+|+|+.. +|+. .++|.... ..|++.+.||.| ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEEE
Confidence 3455552 23588999999875 8996 45675543 569999999998 79999988
No 29
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.19 E-value=0.014 Score=61.50 Aligned_cols=62 Identities=21% Similarity=0.478 Sum_probs=45.3
Q ss_pred eEEE-EecCCCceEEEEecCCCCcc-ceeeeec--CCcEEEEEE-cCCc-eEEEEEEEc-Cee--ccCCCC
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS--GKDFTIMKV-LPSG-VYQYRFLVD-GLW--KYAPDL 155 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~~-~i~L~ks--~~~f~~~l~-Lp~G-~y~YKFiVD-G~W--~~dp~~ 155 (280)
-|+| .|...|++|+|+|+||+|.. ..+|.+. .+.|.+.+. +.+| .|+|++..+ |.| +.||..
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa 202 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLRGESGVWELFIPGLGEGELYKFEILTADGELLLKADPYA 202 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEcCCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCce
Confidence 4778 58889999999999999986 4678885 368998874 6667 666666654 454 445433
No 30
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.07 E-value=0.014 Score=44.98 Aligned_cols=45 Identities=33% Similarity=0.514 Sum_probs=37.3
Q ss_pred CCCceEEEEecCC---CCcc--ceeeeec--CCcEEEEEEcCC--c-eEEEEEEE
Q 023607 101 HDGCEVAVEGSWD---NWKT--RIALQRS--GKDFTIMKVLPS--G-VYQYRFLV 145 (280)
Q Consensus 101 ~gg~~V~V~GSFn---nW~~--~i~L~ks--~~~f~~~l~Lp~--G-~y~YKFiV 145 (280)
..|+.|+|+|+.. +|+. .++|... ++.|++.+.|+. + .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4689999999885 8985 5678765 468999999998 7 79999998
No 31
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=95.99 E-value=0.024 Score=44.87 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=35.8
Q ss_pred CCceEEEEecC---CCCcc--ceeeeec-CCcEEEEEEcCCc--eEEEEEEE
Q 023607 102 DGCEVAVEGSW---DNWKT--RIALQRS-GKDFTIMKVLPSG--VYQYRFLV 145 (280)
Q Consensus 102 gg~~V~V~GSF---nnW~~--~i~L~ks-~~~f~~~l~Lp~G--~y~YKFiV 145 (280)
.|+.|+|+|+. .+|+. .++|... +..|++.+.||.+ .++|||++
T Consensus 13 ~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 13 KGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEE
Confidence 58999999986 48995 4578764 4579999999876 59999998
No 32
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=95.97 E-value=0.032 Score=44.31 Aligned_cols=45 Identities=24% Similarity=0.505 Sum_probs=36.5
Q ss_pred CCCceEEEEecC---CCCcc--ceeeeec-CCcEEEEEEcCCc-eEEEEEEE
Q 023607 101 HDGCEVAVEGSW---DNWKT--RIALQRS-GKDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 101 ~gg~~V~V~GSF---nnW~~--~i~L~ks-~~~f~~~l~Lp~G-~y~YKFiV 145 (280)
.-|+.|+|+|+- -+|+. .++|... +..|++.+.||.+ .++|||+|
T Consensus 11 ~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 11 QFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEECCCCcEEEEEEE
Confidence 358999999984 58996 4567754 4579999999988 69999998
No 33
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=95.45 E-value=0.051 Score=41.60 Aligned_cols=59 Identities=22% Similarity=0.221 Sum_probs=42.6
Q ss_pred EEE-EecCCCceEEEEecCCCCccceeeeec-CCcEEEEEEcCCceEEEEEEEcC-eeccCCCCCc
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWKTRIALQRS-GKDFTIMKVLPSGVYQYRFLVDG-LWKYAPDLPS 157 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~~~i~L~ks-~~~f~~~l~Lp~G~y~YKFiVDG-~W~~dp~~P~ 157 (280)
++| .|...+++|.|.... |. .++|.+. ++.|++.+..-+|. .|+|.|++ ..+.||....
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRDGDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccCCCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 667 599999999999743 54 4788875 46899988633665 57777774 5788876654
No 34
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=95.42 E-value=0.039 Score=57.00 Aligned_cols=62 Identities=21% Similarity=0.419 Sum_probs=45.9
Q ss_pred eEEE-EecCCCceEEEEecCCCCcc-ceeeeec--CCcEEEEEE-cCCceEEEEEEEc---Ce--eccCCCCC
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWKT-RIALQRS--GKDFTIMKV-LPSGVYQYRFLVD---GL--WKYAPDLP 156 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~~-~i~L~ks--~~~f~~~l~-Lp~G~y~YKFiVD---G~--W~~dp~~P 156 (280)
-|+| .|...+++|.|.|+||+|.. ..+|.+. .+.|++.+. +..|. .|||.|+ |. ++.||..-
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~ 100 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRRNDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAF 100 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEecCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEe
Confidence 4678 59999999999999999976 3578775 468998875 34564 5888874 54 46777544
No 35
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.31 E-value=0.065 Score=54.70 Aligned_cols=59 Identities=20% Similarity=0.244 Sum_probs=46.5
Q ss_pred EEE-EecCCCceEEEEecCCCCccceeeeecC-CcEEEEEE-cCCceEEEEEEEcC-eeccCCCCCce
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWKTRIALQRSG-KDFTIMKV-LPSGVYQYRFLVDG-LWKYAPDLPST 158 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~~~i~L~ks~-~~f~~~l~-Lp~G~y~YKFiVDG-~W~~dp~~P~~ 158 (280)
|+| .|...+++|.|.+. ++ .++|.|.+ +.|++++. +.+| +.|+|.||| ..+.||.....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~~-~~~m~k~~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~ 63 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---GA-LHAMQRLGDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQ 63 (542)
T ss_pred CEEEEECCCCCEEEEEeC---CC-EEeCeECCCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccc
Confidence 467 59999999999973 33 57898865 58999986 6677 789999999 67888877654
No 36
>PRK05402 glycogen branching enzyme; Provisional
Probab=95.02 E-value=0.065 Score=56.50 Aligned_cols=60 Identities=17% Similarity=0.003 Sum_probs=43.2
Q ss_pred eEEE-EecCCCceEEEEecCCCCccceeeeec--CCcEEEEEEcCCc-eEEEEEEEcCe--eccCCC
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWKTRIALQRS--GKDFTIMKVLPSG-VYQYRFLVDGL--WKYAPD 154 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~~~i~L~ks--~~~f~~~l~Lp~G-~y~YKFiVDG~--W~~dp~ 154 (280)
=++| +|...|++|+|+|+||+ ....+|++. .+.|++.|.+..| .|+|...-||+ .+.||.
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~~~G~w~~~ip~~~g~~YKy~i~~~g~~~~k~DPy 94 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLHPRGLFAGVLPRKGPFDYRLRVTWGGGEQLIDDPY 94 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEcCCCceEEEEecCCCCCCeEEEEEeCCceeEecccc
Confidence 4677 69999999999999997 445689873 4689998887777 45544333786 444543
No 37
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=94.96 E-value=0.13 Score=40.20 Aligned_cols=54 Identities=17% Similarity=0.447 Sum_probs=35.4
Q ss_pred eEEEEecC------CCceEEEEecCCCCccc--eeeeec-----CCcEEEEEEcCCceEEEEEEE-cC
Q 023607 94 PTMITWSH------DGCEVAVEGSWDNWKTR--IALQRS-----GKDFTIMKVLPSGVYQYRFLV-DG 147 (280)
Q Consensus 94 pv~f~W~~------gg~~V~V~GSFnnW~~~--i~L~ks-----~~~f~~~l~Lp~G~y~YKFiV-DG 147 (280)
+++|.|+. ++.+|++.+.|++|+.. +.|.+. ++.|.++|.+|..-|+..|+. ||
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg 70 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDG 70 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-S
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCC
Confidence 46666633 47899999999999963 557764 367999999999989999988 65
No 38
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=94.37 E-value=0.21 Score=41.23 Aligned_cols=48 Identities=21% Similarity=0.381 Sum_probs=37.0
Q ss_pred EecCCCceEEEEecC---CCCcc--ceeeeec-------C-CcEEEEEEcCCc----eEEEEEEE
Q 023607 98 TWSHDGCEVAVEGSW---DNWKT--RIALQRS-------G-KDFTIMKVLPSG----VYQYRFLV 145 (280)
Q Consensus 98 ~W~~gg~~V~V~GSF---nnW~~--~i~L~ks-------~-~~f~~~l~Lp~G----~y~YKFiV 145 (280)
+..+.|++|+|+|+- -+|+. .++|... . ..|++.+.|+.+ ..+|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 466688999999975 48996 3456543 2 359999999986 69999998
No 39
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=94.23 E-value=0.23 Score=39.20 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=34.5
Q ss_pred CCceEEEEecCC---CCcc--ceeeeec----CCcEEEEEEcCCc-eEEEEEEE
Q 023607 102 DGCEVAVEGSWD---NWKT--RIALQRS----GKDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 102 gg~~V~V~GSFn---nW~~--~i~L~ks----~~~f~~~l~Lp~G-~y~YKFiV 145 (280)
-|++|+|+|+-. +|+. .++|... +..|++.+.++.+ ..+|||+|
T Consensus 12 ~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 12 WGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred CCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 589999999764 7975 4567532 2369999999987 69999999
No 40
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=93.10 E-value=0.28 Score=50.68 Aligned_cols=62 Identities=16% Similarity=0.304 Sum_probs=43.8
Q ss_pred EEE-EecCCCceEEEEecCCCCcc-----ceeeeec-CCcEEEEEE-cCCc-eEEEEEEEcCe--eccCCCCCc
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWKT-----RIALQRS-GKDFTIMKV-LPSG-VYQYRFLVDGL--WKYAPDLPS 157 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~~-----~i~L~ks-~~~f~~~l~-Lp~G-~y~YKFiVDG~--W~~dp~~P~ 157 (280)
|.| .|...+++|.|.+ |++|.. .++|.+. ++.|++.+. +..| .|.|++..+|. ++.||....
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~ 93 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRGENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKA 93 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccCCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCcce
Confidence 788 5999999999998 888853 4678874 568999886 4556 44444444565 478876543
No 41
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=91.71 E-value=1.5 Score=36.46 Aligned_cols=81 Identities=22% Similarity=0.291 Sum_probs=53.0
Q ss_pred eEEEEec----CCCceEEEEecCCCCccc-----eeeeecC--CcEEEEEEcCCc-eEEEEEEEcCe-------------
Q 023607 94 PTMITWS----HDGCEVAVEGSWDNWKTR-----IALQRSG--KDFTIMKVLPSG-VYQYRFLVDGL------------- 148 (280)
Q Consensus 94 pv~f~W~----~gg~~V~V~GSFnnW~~~-----i~L~ks~--~~f~~~l~Lp~G-~y~YKFiVDG~------------- 148 (280)
-|+|-|. +....|.|-++.|++..+ ..|+|-+ +.|+.++.|+.+ +-.|+|+.+-.
T Consensus 3 ~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r~~ 82 (122)
T PF11806_consen 3 LVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPGTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWRAI 82 (122)
T ss_dssp EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TTSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCCCceEEEEEEECcccEEEEEEEecCcccchhHHHHHHHH
Confidence 4899999 456778999999998643 4688854 479999999988 78899997533
Q ss_pred ---eccCCCCCce-eCC---CCceeceEecccC
Q 023607 149 ---WKYAPDLPST-QDD---DGNVYNILDLQEY 174 (280)
Q Consensus 149 ---W~~dp~~P~~-~D~---~G~~nNvI~V~~~ 174 (280)
-+.||-+|.. ... .|...+++++.+.
T Consensus 83 l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A 115 (122)
T PF11806_consen 83 LAQAQADPLNPRPWPNGAQDRGNAASVLELPDA 115 (122)
T ss_dssp GGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred HhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence 3567888874 333 4788888887543
No 42
>PLN02960 alpha-amylase
Probab=91.46 E-value=0.21 Score=53.96 Aligned_cols=53 Identities=17% Similarity=0.390 Sum_probs=38.1
Q ss_pred eEEE-EecCCCceEEEEecCCCCccce-eee-----ecC-CcEEEEEE--cCCce-------EEEEEEEc
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWKTRI-ALQ-----RSG-KDFTIMKV--LPSGV-------YQYRFLVD 146 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~~~i-~L~-----ks~-~~f~~~l~--Lp~G~-------y~YKFiVD 146 (280)
-+.| +|..|++.++|+|+||||+... .|. +++ +.|.|+|+ |..|. -+|.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 3555 7999999999999999999843 444 332 46888874 76662 24777765
No 43
>PLN02950 4-alpha-glucanotransferase
Probab=90.60 E-value=1.4 Score=48.15 Aligned_cols=67 Identities=19% Similarity=0.358 Sum_probs=48.6
Q ss_pred CCCcceeEEEEecC----CCceEEEEecCC---CCcc--ceeeee-cCCcEEEEEEcCCc--eEEEEEEE---cCe--ec
Q 023607 88 GDGVGIPTMITWSH----DGCEVAVEGSWD---NWKT--RIALQR-SGKDFTIMKVLPSG--VYQYRFLV---DGL--WK 150 (280)
Q Consensus 88 ~~~~~vpv~f~W~~----gg~~V~V~GSFn---nW~~--~i~L~k-s~~~f~~~l~Lp~G--~y~YKFiV---DG~--W~ 150 (280)
+....+.++|+-.. .|++|+|+|+-. +|+. .+.|.. ....|.+.+.|+.+ ..+|||++ +|. |-
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE 227 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLE 227 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEe
Confidence 34566788887543 589999999765 8996 345664 34589999999988 59999998 343 65
Q ss_pred cCCC
Q 023607 151 YAPD 154 (280)
Q Consensus 151 ~dp~ 154 (280)
..++
T Consensus 228 ~g~N 231 (909)
T PLN02950 228 LGVN 231 (909)
T ss_pred eCCC
Confidence 4444
No 44
>PLN02950 4-alpha-glucanotransferase
Probab=89.11 E-value=2.1 Score=46.63 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=40.9
Q ss_pred CcceeEEEEec--C-CCceEEEEecCC---CCcc--ceeeeec----CCcEEEEEEcCCc-eEEEEEEE
Q 023607 90 GVGIPTMITWS--H-DGCEVAVEGSWD---NWKT--RIALQRS----GKDFTIMKVLPSG-VYQYRFLV 145 (280)
Q Consensus 90 ~~~vpv~f~W~--~-gg~~V~V~GSFn---nW~~--~i~L~ks----~~~f~~~l~Lp~G-~y~YKFiV 145 (280)
...+.++|.-. . -|++|+|+|+-. +|+. .++|... +..|++.+.|+.| ..+|||++
T Consensus 6 ~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~ 74 (909)
T PLN02950 6 LKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYV 74 (909)
T ss_pred CCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEE
Confidence 34466666543 2 589999999874 7985 4567433 2369999999988 69999995
No 45
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=88.93 E-value=2.2 Score=42.17 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=58.9
Q ss_pred CcceeEEEEecCC-C-------ceEEEEe--cCC--CCccceeeeecC--CcEEEEEEcCCc-eEEEEEEEc---C----
Q 023607 90 GVGIPTMITWSHD-G-------CEVAVEG--SWD--NWKTRIALQRSG--KDFTIMKVLPSG-VYQYRFLVD---G---- 147 (280)
Q Consensus 90 ~~~vpv~f~W~~g-g-------~~V~V~G--SFn--nW~~~i~L~ks~--~~f~~~l~Lp~G-~y~YKFiVD---G---- 147 (280)
+..+-|+|-|.+. + +.|||.+ .-| .+.....|+|-+ +.|+.++.||.. +-.|+|+++ .
T Consensus 36 ~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~~~ 115 (411)
T PRK10439 36 DGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAGTDVWQWSTELSANWRGSYCFIPTERDDIFSA 115 (411)
T ss_pred CCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCCCceEEEEEEECcccEEEEEEEeccccccccc
Confidence 4567899999862 3 3588843 222 233334688854 479999999988 889999993 1
Q ss_pred ---------------------eeccCCCCCce-eCCCCceeceEecccCCC
Q 023607 148 ---------------------LWKYAPDLPST-QDDDGNVYNILDLQEYVP 176 (280)
Q Consensus 148 ---------------------~W~~dp~~P~~-~D~~G~~nNvI~V~~~~p 176 (280)
.-+.||.+|.. .+..|+..++|++.+..+
T Consensus 116 ~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a~~ 166 (411)
T PRK10439 116 FAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQAPL 166 (411)
T ss_pred cccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCCCC
Confidence 11378888774 345566678998876543
No 46
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=86.84 E-value=1.6 Score=46.03 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=39.3
Q ss_pred EEE-EecCCCceEEEEecCCCCcc----ceeeeec-CCcEEEEEE-cCCceEEEEEEEcCee
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWKT----RIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGLW 149 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~~----~i~L~ks-~~~f~~~l~-Lp~G~y~YKFiVDG~W 149 (280)
|.| .|...+++|.|. -|++|.. .++|.+. ++.|.+.+. +..|. .|+|.|+|.|
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPERTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEecccCCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 678 599999999986 5565542 4578764 568999885 66776 5999999854
No 47
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=86.62 E-value=2.2 Score=32.98 Aligned_cols=60 Identities=25% Similarity=0.315 Sum_probs=41.5
Q ss_pred CcceeEEEEecCCC---ceEEEEecC-CCCccceeeeec-CCcEEEEEEcCCceEEEEEEE-c-CeeccC
Q 023607 90 GVGIPTMITWSHDG---CEVAVEGSW-DNWKTRIALQRS-GKDFTIMKVLPSGVYQYRFLV-D-GLWKYA 152 (280)
Q Consensus 90 ~~~vpv~f~W~~gg---~~V~V~GSF-nnW~~~i~L~ks-~~~f~~~l~Lp~G~y~YKFiV-D-G~W~~d 152 (280)
+.-.-++|.+.+|. ..|.|.++= .+|. +|.|+ +..|.+.-.++.|-+.||+.. | |+++..
T Consensus 11 ~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 11 PYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRSWGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp TTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEECTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecCcCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 55667888887764 478898533 4586 49997 668999778888899999988 7 887764
No 48
>PLN02316 synthase/transferase
Probab=86.59 E-value=3.6 Score=45.53 Aligned_cols=60 Identities=18% Similarity=0.388 Sum_probs=45.1
Q ss_pred CCcceeEEEEecC------CCceEEEEecCCCCccce----eeee----cCCcEEEEEEcCCceEEEEEEE-cCe
Q 023607 89 DGVGIPTMITWSH------DGCEVAVEGSWDNWKTRI----ALQR----SGKDFTIMKVLPSGVYQYRFLV-DGL 148 (280)
Q Consensus 89 ~~~~vpv~f~W~~------gg~~V~V~GSFnnW~~~i----~L~k----s~~~f~~~l~Lp~G~y~YKFiV-DG~ 148 (280)
...+-++++-|+. +..+|+|.|.||+|+... .|.+ +++-|.+++.+|..-|-.-|+. ||.
T Consensus 325 ~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~ 399 (1036)
T PLN02316 325 FKAGDTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP 399 (1036)
T ss_pred cCCCCEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence 3455578888873 468999999999999632 2333 2346899999999999999997 663
No 49
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=85.64 E-value=3.5 Score=45.95 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=44.3
Q ss_pred EEE-EecCCCceEEEEe-cCCCCcc---ceeeeec-CCcEEEEEE-cCCc-----eEEEEEEEcC----eeccCCCCC
Q 023607 95 TMI-TWSHDGCEVAVEG-SWDNWKT---RIALQRS-GKDFTIMKV-LPSG-----VYQYRFLVDG----LWKYAPDLP 156 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~G-SFnnW~~---~i~L~ks-~~~f~~~l~-Lp~G-----~y~YKFiVDG----~W~~dp~~P 156 (280)
+.| .|...+++|.|.. ++++|.. .++|.+. ++.|++.+. +.+| -+.|+|.|++ ..+.||...
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 567 5999999999998 5566653 5788875 468999886 3332 3678888876 356776544
No 50
>PLN02316 synthase/transferase
Probab=85.16 E-value=1.7 Score=47.98 Aligned_cols=59 Identities=15% Similarity=0.394 Sum_probs=44.1
Q ss_pred eEEEEecC------CCceEEEEecCCCCccc---eeeeecC---CcEEEEEEcCCceEEEEEEE-cCeeccC
Q 023607 94 PTMITWSH------DGCEVAVEGSWDNWKTR---IALQRSG---KDFTIMKVLPSGVYQYRFLV-DGLWKYA 152 (280)
Q Consensus 94 pv~f~W~~------gg~~V~V~GSFnnW~~~---i~L~ks~---~~f~~~l~Lp~G~y~YKFiV-DG~W~~d 152 (280)
++.+-|+. +..+|.|.|-||+|+-. ..|.|++ +-|++.+.+|+.-|..-|+. ||.-.+|
T Consensus 155 ~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yD 226 (1036)
T PLN02316 155 DIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYD 226 (1036)
T ss_pred eeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccc
Confidence 45555543 24789999999999863 3577753 45899999999999999998 7754444
No 51
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=84.60 E-value=6.7 Score=30.71 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=36.3
Q ss_pred cceeEEEEe-cCCCceEEEEecCCC--Cc-cceeeeecCC-----cEEEEEEcCCceEEEEEEE
Q 023607 91 VGIPTMITW-SHDGCEVAVEGSWDN--WK-TRIALQRSGK-----DFTIMKVLPSGVYQYRFLV 145 (280)
Q Consensus 91 ~~vpv~f~W-~~gg~~V~V~GSFnn--W~-~~i~L~ks~~-----~f~~~l~Lp~G~y~YKFiV 145 (280)
..+.++|+= ....++|.|.-.-+. |. ..++|.+.+. .|++++.++.|.+.|.|+|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 444455543 234678888654332 22 2578887542 4899998888999999999
No 52
>PRK03705 glycogen debranching enzyme; Provisional
Probab=81.77 E-value=4.1 Score=42.95 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=39.8
Q ss_pred EEE-EecCCCceEEEEecCCCCc--cceeeeec-CCcEEEEEE-cCCceEEEEEEEcCee
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWK--TRIALQRS-GKDFTIMKV-LPSGVYQYRFLVDGLW 149 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~--~~i~L~ks-~~~f~~~l~-Lp~G~y~YKFiVDG~W 149 (280)
|.| .|...+++|.|.. |+++. ..++|.+. ++.|++.+. +..|. .|+|.|+|.|
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPARSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeeeccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 778 5999999999997 77653 35678764 568999875 55665 5999999853
No 53
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=78.23 E-value=5.9 Score=43.32 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=48.2
Q ss_pred eEEE-EecCCCceEEEEecCCCCc--cceeeeec--CCcEEEEEE-cCCceEEEEEEEc------Ce----eccCCCCCc
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWK--TRIALQRS--GKDFTIMKV-LPSGVYQYRFLVD------GL----WKYAPDLPS 157 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~--~~i~L~ks--~~~f~~~l~-Lp~G~y~YKFiVD------G~----W~~dp~~P~ 157 (280)
-|+| .|...+++|.|....++|. ..++|.+. .+.|++.+. ...|. .|+|.|+ |+ ++.||..-.
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~a 214 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRDSTSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSVS 214 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccCCCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcce
Confidence 3677 5999999999997666553 24678875 578999885 44554 3666665 53 367775543
Q ss_pred eeCCCCceeceEecc
Q 023607 158 TQDDDGNVYNILDLQ 172 (280)
Q Consensus 158 ~~D~~G~~nNvI~V~ 172 (280)
.. ..|...=+++..
T Consensus 215 ls-~n~~~S~VvDl~ 228 (898)
T TIGR02103 215 LS-ANSEYSQVVDLN 228 (898)
T ss_pred Ec-CCCCCeEEeCCc
Confidence 32 233333344443
No 54
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=75.23 E-value=14 Score=29.90 Aligned_cols=56 Identities=14% Similarity=0.172 Sum_probs=37.5
Q ss_pred CcceeEEEEec-CCCceEEEE-ecCCCC----c-cceeeeecC-----CcEEEEEEcCCceEEEEEEE
Q 023607 90 GVGIPTMITWS-HDGCEVAVE-GSWDNW----K-TRIALQRSG-----KDFTIMKVLPSGVYQYRFLV 145 (280)
Q Consensus 90 ~~~vpv~f~W~-~gg~~V~V~-GSFnnW----~-~~i~L~ks~-----~~f~~~l~Lp~G~y~YKFiV 145 (280)
...+-++|+=. ...++|.|. |+-.+| . ...+|++.. +.|.+++.++..+.+|.|.|
T Consensus 20 ~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l 87 (120)
T PF02903_consen 20 GDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFEL 87 (120)
T ss_dssp TTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEE
T ss_pred CCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEE
Confidence 45566666553 467889885 666666 2 246788742 25899999999988999988
No 55
>PLN03244 alpha-amylase; Provisional
Probab=74.14 E-value=2.9 Score=45.14 Aligned_cols=52 Identities=21% Similarity=0.467 Sum_probs=36.7
Q ss_pred EEEEecCCCceEEEEecCCCCccceeeee------cC-CcEEEEEE--cCCce----E---EEEEEEc
Q 023607 95 TMITWSHDGCEVAVEGSWDNWKTRIALQR------SG-KDFTIMKV--LPSGV----Y---QYRFLVD 146 (280)
Q Consensus 95 v~f~W~~gg~~V~V~GSFnnW~~~i~L~k------s~-~~f~~~l~--Lp~G~----y---~YKFiVD 146 (280)
+--.|..|+.--+|+|+||||++..-..| ++ +.|.|+|+ |..|. | +|.|.-|
T Consensus 134 ~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 134 DFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred eeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 34479999999999999999998543434 22 46888874 76662 2 4666544
No 56
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=71.85 E-value=11 Score=31.83 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=34.3
Q ss_pred eEEEEecCC-CceEEEEecCCCCccceeee-ecCCcEEEEEEcCCceEEEEE
Q 023607 94 PTMITWSHD-GCEVAVEGSWDNWKTRIALQ-RSGKDFTIMKVLPSGVYQYRF 143 (280)
Q Consensus 94 pv~f~W~~g-g~~V~V~GSFnnW~~~i~L~-ks~~~f~~~l~Lp~G~y~YKF 143 (280)
.|+|+|... +.+|...++.+-|... .+. +-+..|+.+++- +|.|.|+=
T Consensus 63 TVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~~~~~s~~~Tfe~-~G~Y~Y~C 112 (128)
T COG3794 63 TVTWVNTDSVGHNVTAVGGMDPEGSG-TLKAGINESFTHTFET-PGEYTYYC 112 (128)
T ss_pred EEEEEECCCCCceEEEeCCCCccccc-ccccCCCcceEEEecc-cceEEEEe
Confidence 489999987 9999999988555542 232 234567777665 89999964
No 57
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=71.49 E-value=8.7 Score=43.33 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=41.0
Q ss_pred EEE-EecCCCceEEEEecCCCCcc----ceeee-ecCCcEEEEEE-cCCceEEEEEEEcCee
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWKT----RIALQ-RSGKDFTIMKV-LPSGVYQYRFLVDGLW 149 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~~----~i~L~-ks~~~f~~~l~-Lp~G~y~YKFiVDG~W 149 (280)
|.| .|...+++|.|+ -|+.|.. .++|. +.++.|++.+. +.+|. .|+|.|+|.|
T Consensus 25 v~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 25 VNLALFSGAAERVEFC-LFDLWGVREEARIKLPGRTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred EEEEEECCCCCEEEEE-EEECCCCCeeEEEECCCCcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 778 588899999997 8888864 35664 45678888764 77887 6999999855
No 58
>PLN02877 alpha-amylase/limit dextrinase
Probab=68.72 E-value=35 Score=37.88 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=35.2
Q ss_pred eEEE-EecCCCceEEEEecCCCCc---c--ceeeeecCCcEEEEEEc-CCceEEEEEEEc
Q 023607 94 PTMI-TWSHDGCEVAVEGSWDNWK---T--RIALQRSGKDFTIMKVL-PSGVYQYRFLVD 146 (280)
Q Consensus 94 pv~f-~W~~gg~~V~V~GSFnnW~---~--~i~L~ks~~~f~~~l~L-p~G~y~YKFiVD 146 (280)
-|+| .|...+++|.|.- |++|. . .++|.+.++.|++.+.- ..| ..|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~~~~GVWsv~v~~~~~G-~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLKESNGVWSVEGPKSWEG-CYYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEecccCCCCEEEEEeccCCCC-CeeEEEEe
Confidence 4677 5999999999985 56553 2 34577667899998763 345 34677775
No 59
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=65.95 E-value=25 Score=28.43 Aligned_cols=63 Identities=24% Similarity=0.388 Sum_probs=38.7
Q ss_pred CcceeEEEEecCC--CceEEEEecCCCCccceeee----e-----cC----CcEEEEEEcCCc--------eEEEEEEEc
Q 023607 90 GVGIPTMITWSHD--GCEVAVEGSWDNWKTRIALQ----R-----SG----KDFTIMKVLPSG--------VYQYRFLVD 146 (280)
Q Consensus 90 ~~~vpv~f~W~~g--g~~V~V~GSFnnW~~~i~L~----k-----s~----~~f~~~l~Lp~G--------~y~YKFiVD 146 (280)
...+..++.-..- .|+|.|.=|||+|+....+. . +. +.|...+.|+.. .+--+|.++
T Consensus 18 ~~~L~G~V~V~NlayeK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~ 97 (113)
T PF03370_consen 18 QQSLSGTVRVRNLAYEKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVN 97 (113)
T ss_dssp SSEEEEEEEEE-SSSSEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEET
T ss_pred CCEEEEEEEEEcCCCCeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeC
Confidence 3445555555443 47899999999998643321 1 11 358888887643 466788888
Q ss_pred Ce--eccC
Q 023607 147 GL--WKYA 152 (280)
Q Consensus 147 G~--W~~d 152 (280)
|+ |-..
T Consensus 98 g~eyWDNN 105 (113)
T PF03370_consen 98 GQEYWDNN 105 (113)
T ss_dssp TEEEEEST
T ss_pred CCEEecCC
Confidence 86 5433
No 60
>PRK10785 maltodextrin glucosidase; Provisional
Probab=49.46 E-value=80 Score=32.81 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=40.1
Q ss_pred CcceeEEEEecCC--CceEEEEecCCCCccceeeeecC-----CcEEEEEEcC--CceEEEEEEE--cCe
Q 023607 90 GVGIPTMITWSHD--GCEVAVEGSWDNWKTRIALQRSG-----KDFTIMKVLP--SGVYQYRFLV--DGL 148 (280)
Q Consensus 90 ~~~vpv~f~W~~g--g~~V~V~GSFnnW~~~i~L~ks~-----~~f~~~l~Lp--~G~y~YKFiV--DG~ 148 (280)
...+.++|+-..+ -++|.|.-.+++-....+|++.+ ..|.+++.++ .+++.|.|.+ +++
T Consensus 18 ~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 18 KDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 4556666654332 46888877667655567888743 2488888885 7789999988 554
No 61
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.69 E-value=15 Score=38.57 Aligned_cols=26 Identities=27% Similarity=0.750 Sum_probs=21.4
Q ss_pred CCceEEEEEEEcCeecc---CCCCCceeC
Q 023607 135 PSGVYQYRFLVDGLWKY---APDLPSTQD 160 (280)
Q Consensus 135 p~G~y~YKFiVDG~W~~---dp~~P~~~D 160 (280)
..|.|+|||.++|+|+. |+.+|+..+
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~ 143 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNG 143 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcC
Confidence 46999999999999964 777888554
No 62
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=46.29 E-value=14 Score=39.49 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=27.6
Q ss_pred EEE-EecCCCceEEEEecCCCCccce-eee-ecC-CcEEEEEE
Q 023607 95 TMI-TWSHDGCEVAVEGSWDNWKTRI-ALQ-RSG-KDFTIMKV 133 (280)
Q Consensus 95 v~f-~W~~gg~~V~V~GSFnnW~~~i-~L~-ks~-~~f~~~l~ 133 (280)
+.+ .|..+++.|.++|+||+|.... .+. |.. +.|++.+.
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPKDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCcccccceeEEecC
Confidence 555 5999999999999999999732 222 322 35777654
No 63
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=45.89 E-value=49 Score=29.58 Aligned_cols=53 Identities=21% Similarity=0.557 Sum_probs=30.4
Q ss_pred cceeEEEEecCCCceEEEEecCCCCccceeeeecCC-cEEEEEEcC-CceEEEEEE--Ec--CeeccC
Q 023607 91 VGIPTMITWSHDGCEVAVEGSWDNWKTRIALQRSGK-DFTIMKVLP-SGVYQYRFL--VD--GLWKYA 152 (280)
Q Consensus 91 ~~vpv~f~W~~gg~~V~V~GSFnnW~~~i~L~ks~~-~f~~~l~Lp-~G~y~YKFi--VD--G~W~~d 152 (280)
..+-..+.|...+. ..|+. .+|...++ .|...+.+. .|.|+|+.. +| +.|+++
T Consensus 41 D~l~A~l~~r~~~~--------~~w~~-vpM~~~gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 41 DALAAELLWRHPGE--------REWQE-VPMTPLGNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp S-EEEEEEEE-TTS---------B-----B-EESTS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred CcEEEEEEEECCCC--------Cccee-eccccCCCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 44556666665443 34886 89988776 599998875 799999986 57 568776
No 64
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=42.19 E-value=29 Score=31.73 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=13.3
Q ss_pred EEE-cCe--eccCCCCCcee
Q 023607 143 FLV-DGL--WKYAPDLPSTQ 159 (280)
Q Consensus 143 FiV-DG~--W~~dp~~P~~~ 159 (280)
.|| ||+ |.+|+++..++
T Consensus 66 ~iVsDGk~lW~YDpdleQVT 85 (210)
T TIGR03009 66 AWICNGTAVYAYNGLAKTVT 85 (210)
T ss_pred EEEECCCEEEEECCChhhEE
Confidence 455 997 99999987754
No 65
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=41.28 E-value=53 Score=24.80 Aligned_cols=48 Identities=13% Similarity=0.219 Sum_probs=26.3
Q ss_pred eEEEEecCC-CceEE-EEecCCCCccceeeeecCCcEEEEEEcCCceEEEE
Q 023607 94 PTMITWSHD-GCEVA-VEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYR 142 (280)
Q Consensus 94 pv~f~W~~g-g~~V~-V~GSFnnW~~~i~L~ks~~~f~~~l~Lp~G~y~YK 142 (280)
.++|++... +.+|. ..|.+.++...-.+...+..|+.++. .+|.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMMKKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCccccccccccCCCCEEEEECC-CCEEEEEE
Confidence 356666543 45664 44555444322234445566776654 47888775
No 66
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=38.28 E-value=87 Score=25.80 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=23.5
Q ss_pred eEEEEecCCCceEEEE-ecCCCCccceeeeecCCcEEEEEEcCCceEEEE
Q 023607 94 PTMITWSHDGCEVAVE-GSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYR 142 (280)
Q Consensus 94 pv~f~W~~gg~~V~V~-GSFnnW~~~i~L~ks~~~f~~~l~Lp~G~y~YK 142 (280)
.|+|+|...+..|... +..- +....-....+..|+.++. .+|.|.|.
T Consensus 24 TV~f~n~d~~Hnv~~~~~~~p-~g~~~~~s~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 24 TVTFVPTDKGHNVETIKGMIP-EGAEAFKSKINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred EEEEEECCCCeeEEEccCCCc-CCcccccCCCCCEEEEEeC-CCEEEEEE
Confidence 5788888777766542 2111 1110000122345666655 46777775
No 67
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=36.36 E-value=42 Score=26.50 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=16.5
Q ss_pred EEEEEEcCCceEEEEEEEcCe
Q 023607 128 FTIMKVLPSGVYQYRFLVDGL 148 (280)
Q Consensus 128 f~~~l~Lp~G~y~YKFiVDG~ 148 (280)
.+..+.|+.|+|..+|...+.
T Consensus 91 ~~~~v~l~~G~h~i~l~~~~~ 111 (125)
T PF03422_consen 91 VSVSVKLPAGKHTIYLVFNGG 111 (125)
T ss_dssp EEEEEEEESEEEEEEEEESSS
T ss_pred EEEEEeeCCCeeEEEEEEECC
Confidence 345678899999999998753
No 68
>COG3397 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.51 E-value=2e+02 Score=27.87 Aligned_cols=70 Identities=19% Similarity=0.443 Sum_probs=43.8
Q ss_pred eEEEEecCCCc------eEEEEecCCCCccceeeeecCCc---EEEE--EEcCCc-eEEEEEEEc----------Ceecc
Q 023607 94 PTMITWSHDGC------EVAVEGSWDNWKTRIALQRSGKD---FTIM--KVLPSG-VYQYRFLVD----------GLWKY 151 (280)
Q Consensus 94 pv~f~W~~gg~------~V~V~GSFnnW~~~i~L~ks~~~---f~~~--l~Lp~G-~y~YKFiVD----------G~W~~ 151 (280)
+.+|+|..-+. ++||+ =.+|++..||.+++=+ |..+ ..+.+| .|.|.-.|= +.|..
T Consensus 115 ~~~f~w~~TapH~t~~w~yYiT--K~~wdpnkPLt~~dlEL~p~~~i~~~g~~p~~~~~~~~~iP~~rtGy~VI~~vWq~ 192 (308)
T COG3397 115 PQTFVWKATAPHNTAYWKYYIT--KPGWDPNKPLTWDDLELAPFCSITGVGLEPGKNYRHECTIPQDRTGYHVIYAVWQR 192 (308)
T ss_pred ceEEEEEeecCCCCcceEEEEC--CCCCCCCCCccHHhcccccceeecccccCCCcceeEEEecCCCCcccEEEEEEEEe
Confidence 67899976532 68884 4789988888876422 3332 345555 455554442 44543
Q ss_pred CCCCCceeCCCCceeceEecc
Q 023607 152 APDLPSTQDDDGNVYNILDLQ 172 (280)
Q Consensus 152 dp~~P~~~D~~G~~nNvI~V~ 172 (280)
.|..+..+|+|+|.
T Consensus 193 -------~Dt~n~Fyn~iDv~ 206 (308)
T COG3397 193 -------ADTGNAFYNCIDVN 206 (308)
T ss_pred -------ccCCCcceEEEEEe
Confidence 34455788999985
No 69
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=31.15 E-value=94 Score=24.18 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=22.3
Q ss_pred CcceeEEEEecCCC---ceEEEEecCCCCccceeeeecCCcEEEEE-EcCCceEEEE
Q 023607 90 GVGIPTMITWSHDG---CEVAVEGSWDNWKTRIALQRSGKDFTIMK-VLPSGVYQYR 142 (280)
Q Consensus 90 ~~~vpv~f~W~~gg---~~V~V~GSFnnW~~~i~L~ks~~~f~~~l-~Lp~G~y~YK 142 (280)
..+.+++|+|...+ .++.+.+ -|.. ..| +.++..++++ .+.+|+|+|.
T Consensus 40 ~~G~~v~l~~~N~~~~~h~~~i~~---~~~~-~~l-~~g~~~~~~f~~~~~G~y~~~ 91 (104)
T PF13473_consen 40 KAGQPVTLTFTNNDSRPHEFVIPD---LGIS-KVL-PPGETATVTFTPLKPGEYEFY 91 (104)
T ss_dssp ETTCEEEEEEEE-SSS-EEEEEGG---GTEE-EEE--TT-EEEEEEEE-S-EEEEEB
T ss_pred cCCCeEEEEEEECCCCcEEEEECC---CceE-EEE-CCCCEEEEEEcCCCCEEEEEE
Confidence 34556778886532 2333322 1211 122 3345566665 7889998873
No 70
>PLN00115 pollen allergen group 3; Provisional
Probab=29.05 E-value=1.6e+02 Score=24.50 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=34.2
Q ss_pred cCCCceEEEEecC-CCCccceeeeec-CCcEEEEEE-cCCceEEEEEEEc-Ceecc
Q 023607 100 SHDGCEVAVEGSW-DNWKTRIALQRS-GKDFTIMKV-LPSGVYQYRFLVD-GLWKY 151 (280)
Q Consensus 100 ~~gg~~V~V~GSF-nnW~~~i~L~ks-~~~f~~~l~-Lp~G~y~YKFiVD-G~W~~ 151 (280)
+.+=..|.|.++= .+|.. +|+|+ +..|.+.-. .+.|-+.+||..+ |.+.+
T Consensus 44 ~~dI~~V~Ik~~g~~~W~~--~M~rswGavW~~~s~~pl~GPlS~R~t~~~G~~~v 97 (118)
T PLN00115 44 NVAISEVEIKEKGAKDWVD--DLKESSTNTWTLKSKAPLKGPFSVRFLVKGGGYRV 97 (118)
T ss_pred eCCEEEEEEeecCCCcccC--ccccCccceeEecCCCCCCCceEEEEEEeCCCEEE
Confidence 4444678888862 46861 49997 678987643 3468999999885 66443
No 71
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=28.63 E-value=56 Score=31.08 Aligned_cols=25 Identities=28% Similarity=0.596 Sum_probs=20.8
Q ss_pred cCCceEEEEEEEcCeecc---CCCCCce
Q 023607 134 LPSGVYQYRFLVDGLWKY---APDLPST 158 (280)
Q Consensus 134 Lp~G~y~YKFiVDG~W~~---dp~~P~~ 158 (280)
-+.|.|.+||.++|.|+. |+.+|+.
T Consensus 98 ~~~G~y~vrl~~~G~w~~V~VDd~lP~~ 125 (318)
T smart00230 98 NYAGIFHFRFWRFGKWVDVVIDDRLPTY 125 (318)
T ss_pred ccCCEEEEEEEECCEEEEEEecCCCeee
Confidence 467999999999999865 7777864
No 72
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=28.24 E-value=59 Score=25.97 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=12.8
Q ss_pred EEEEcCCceEEEEEEEcC
Q 023607 130 IMKVLPSGVYQYRFLVDG 147 (280)
Q Consensus 130 ~~l~Lp~G~y~YKFiVDG 147 (280)
+.+.++.|.|..+|+..|
T Consensus 101 ~~v~~~~G~~~l~~~~~~ 118 (129)
T smart00606 101 ATVTLPAGVHDVYLVFKG 118 (129)
T ss_pred EEEccCCceEEEEEEEEC
Confidence 446677898888777654
No 73
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=27.02 E-value=1.1e+02 Score=30.55 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=19.6
Q ss_pred CCcEEEEE--EcCCceEEEEEEEcCe
Q 023607 125 GKDFTIMK--VLPSGVYQYRFLVDGL 148 (280)
Q Consensus 125 ~~~f~~~l--~Lp~G~y~YKFiVDG~ 148 (280)
++.|+..+ ..++|.|+.++.+||.
T Consensus 170 DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 170 DGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred CceEEEEeeccCCCceEEEEEEEcCc
Confidence 45788875 4579999999999985
No 74
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=26.91 E-value=85 Score=25.51 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=21.9
Q ss_pred eeeeecCCcEEEEEEcCCceEEEEEEEcCeeccCCC
Q 023607 119 IALQRSGKDFTIMKVLPSGVYQYRFLVDGLWKYAPD 154 (280)
Q Consensus 119 i~L~ks~~~f~~~l~Lp~G~y~YKFiVDG~W~~dp~ 154 (280)
+-++|..-.-.|-+-=|.|-|+|.|. ||.|++.-+
T Consensus 48 ~VINkQ~p~~QIWlas~sG~~hf~~~-~~~W~~~r~ 82 (105)
T PRK00446 48 IIINRQEPLHELWLAAKSGGFHFDYK-DGEWICDRS 82 (105)
T ss_pred EEEeCCCchhheeEecCCCCccceec-CCeEEECCC
Confidence 44555433222222236799999996 999998753
No 75
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=26.27 E-value=2.2e+02 Score=23.43 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=25.4
Q ss_pred eEEEEecC--CCceEEEEecCCCCccceeeeecCCcEEEEEEcCCceEEEE
Q 023607 94 PTMITWSH--DGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYR 142 (280)
Q Consensus 94 pv~f~W~~--gg~~V~V~GSFnnW~~~i~L~ks~~~f~~~l~Lp~G~y~YK 142 (280)
.|+|+|+. .+..|...+. ..|.....+...+..|+.++. .+|.|.|.
T Consensus 51 TVtw~~~~d~~~HnV~s~~~-~~f~s~~~~~~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 51 TVVWEWTGEGGGHNVVSDGD-GDLDESERVSEEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred EEEEEECCCCCCEEEEECCC-CCccccccccCCCCEEEEEec-CCcEEEEE
Confidence 46777765 3456654310 234421112234557877774 57888886
No 76
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=24.86 E-value=40 Score=27.30 Aligned_cols=20 Identities=20% Similarity=0.582 Sum_probs=15.8
Q ss_pred cCCceEEEEEEEcCeeccCCC
Q 023607 134 LPSGVYQYRFLVDGLWKYAPD 154 (280)
Q Consensus 134 Lp~G~y~YKFiVDG~W~~dp~ 154 (280)
=|.|-|||.|. ||+|++.-+
T Consensus 64 Sp~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 64 SKVGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred cCCCCccceec-CCEEEECCC
Confidence 35588999995 999998753
No 77
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=24.40 E-value=1.3e+02 Score=24.34 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=23.6
Q ss_pred eeeecCCcEEEEEEcC-CceEEEEEEEcCeeccCCC
Q 023607 120 ALQRSGKDFTIMKVLP-SGVYQYRFLVDGLWKYAPD 154 (280)
Q Consensus 120 ~L~ks~~~f~~~l~Lp-~G~y~YKFiVDG~W~~dp~ 154 (280)
-+.|..-...+-+-=| .|-|||.|. +|+|++.-+
T Consensus 52 VINkQ~p~~QIWlsSpisG~~hf~~~-~~~W~~~r~ 86 (109)
T PF01491_consen 52 VINKQPPNRQIWLSSPISGPFHFDYD-DGKWIDTRD 86 (109)
T ss_dssp EEEEECCCTEEEEEETTTEEEEEEEE-SSSEEETTT
T ss_pred EEeCCCHHHHHHHhcccCCceEEEEc-CCEEEECCC
Confidence 3445444444555557 899999999 999997753
No 78
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=23.59 E-value=76 Score=29.86 Aligned_cols=25 Identities=32% Similarity=0.763 Sum_probs=20.6
Q ss_pred cCCceEEEEEEEcCeecc---CCCCCce
Q 023607 134 LPSGVYQYRFLVDGLWKY---APDLPST 158 (280)
Q Consensus 134 Lp~G~y~YKFiVDG~W~~---dp~~P~~ 158 (280)
.+.|.|..||.++|+|+. |+.+|..
T Consensus 106 ~~~G~y~v~l~~~G~w~~V~VDD~lP~~ 133 (315)
T cd00044 106 NYAGIYHFRFWKNGEWVEVVIDDRLPTS 133 (315)
T ss_pred CcCcEEEEEEEECCEEEEEEecCCCeec
Confidence 567999999999999875 6677764
No 79
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=23.37 E-value=51 Score=26.47 Aligned_cols=18 Identities=44% Similarity=0.942 Sum_probs=14.8
Q ss_pred CceEEEEEEEcCeeccCCC
Q 023607 136 SGVYQYRFLVDGLWKYAPD 154 (280)
Q Consensus 136 ~G~y~YKFiVDG~W~~dp~ 154 (280)
.|-|+|.| ++|+|++.-+
T Consensus 66 sGp~hfd~-~~~~Wi~~r~ 83 (97)
T TIGR03422 66 SGPKRYDY-VNGEWIYLRD 83 (97)
T ss_pred CCCcceee-cCCEEEECCC
Confidence 68899999 4999998654
No 80
>PLN03023 Expansin-like B1; Provisional
Probab=23.08 E-value=1.7e+02 Score=27.37 Aligned_cols=51 Identities=16% Similarity=0.412 Sum_probs=35.1
Q ss_pred ceeEEEEecCC-C--ceEEEEec-CCCCccceeeeec-CCcEEEEEEcCCceEEEEEEEc
Q 023607 92 GIPTMITWSHD-G--CEVAVEGS-WDNWKTRIALQRS-GKDFTIMKVLPSGVYQYRFLVD 146 (280)
Q Consensus 92 ~vpv~f~W~~g-g--~~V~V~GS-FnnW~~~i~L~ks-~~~f~~~l~Lp~G~y~YKFiVD 146 (280)
-.-++|...+| | ..|.|.|+ =.+|. +|.|+ +..|.+... +.|.+.+||.|.
T Consensus 161 yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~---~M~rnwGa~W~~~~~-l~Gp~slrf~v~ 216 (247)
T PLN03023 161 YLAIVMLYQAGQNDILAVEIWQEDCKEWR---GMRKAYGAVWDMPNP-PKGPITLRFQVS 216 (247)
T ss_pred eEEEEEEEcCCCccEEEEEEEecCCCCce---ECccCCcceeEcCCC-CCCceeEEEEEE
Confidence 34566666554 2 56788884 34786 59887 668988644 469999999885
No 81
>COG1477 ApbE Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=21.73 E-value=1.7e+02 Score=28.56 Aligned_cols=49 Identities=27% Similarity=0.266 Sum_probs=31.0
Q ss_pred ceEEEEe---cCCCCccceeeeecC-CcEEEEEEc------CCceEEEEEEEcCeeccC
Q 023607 104 CEVAVEG---SWDNWKTRIALQRSG-KDFTIMKVL------PSGVYQYRFLVDGLWKYA 152 (280)
Q Consensus 104 ~~V~V~G---SFnnW~~~i~L~ks~-~~f~~~l~L------p~G~y~YKFiVDG~W~~d 152 (280)
.++.+.| +=..|+-.+..-... +....++.| .+|.|+-.|.+||++.+-
T Consensus 202 G~i~~~G~~~~g~pW~IgI~~P~~~~~~~~~ii~l~d~aVaTSG~Y~r~~e~dG~ry~H 260 (337)
T COG1477 202 GEIRVIGKNPDGKPWRIGIQNPFAPRGAVQGIVPLKDGAVATSGDYERYFEVDGKRYHH 260 (337)
T ss_pred cceEEeccCCCCCCcEEEEeCCCCCCCceeEEEecCCceEEcccCceeEEEECCEEEee
Confidence 4788888 223587544332222 334444544 589999999999986553
No 82
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=21.37 E-value=1.5e+02 Score=23.34 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCceEEEEEEEcCeeccCCCCCc
Q 023607 126 KDFTIMKVLPSGVYQYRFLVDGLWKYAPDLPS 157 (280)
Q Consensus 126 ~~f~~~l~Lp~G~y~YKFiVDG~W~~dp~~P~ 157 (280)
+.=++.|.|+||+|....+. |.+.+-+..|.
T Consensus 51 Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 51 GQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 34566789999999999887 44555554443
No 83
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=20.57 E-value=2.5e+02 Score=20.10 Aligned_cols=42 Identities=29% Similarity=0.374 Sum_probs=26.6
Q ss_pred EEEecCCCceEEEEecCCCCccceeeeecCCcEEEEEEcCCceEEEEEEEcCe
Q 023607 96 MITWSHDGCEVAVEGSWDNWKTRIALQRSGKDFTIMKVLPSGVYQYRFLVDGL 148 (280)
Q Consensus 96 ~f~W~~gg~~V~V~GSFnnW~~~i~L~ks~~~f~~~l~Lp~G~y~YKFiVDG~ 148 (280)
.|+=...+-+|+|-|.+-+ ..++ ....|++|.|.+++.-+|-
T Consensus 5 ~V~s~p~gA~V~vdg~~~G---~tp~--------~~~~l~~G~~~v~v~~~Gy 46 (71)
T PF08308_consen 5 RVTSNPSGAEVYVDGKYIG---TTPL--------TLKDLPPGEHTVTVEKPGY 46 (71)
T ss_pred EEEEECCCCEEEECCEEec---cCcc--------eeeecCCccEEEEEEECCC
Confidence 3444556778998776655 1222 1123888888888888884
Done!