BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023608
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
+H+ A G E +K L+ GAD + +DS+GRT LH+A G+ E+
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIV 86
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
+H+ A G E +K L+ GAD + +DS+GRT LH+A G+ E+
Sbjct: 74 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIV 119
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
A G+ + +K+ L GAD + DS+GRT LH+A G+ E+
Sbjct: 12 AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIV 53
Score = 30.8 bits (68), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
+H+ A G E +K L+ GAD + DS+GRT L A +G
Sbjct: 107 LHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHG 147
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
+HH A G E +K ++ GAD + +DS+GRT LH A G+ EV
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 86
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
+HH A G E +K ++ GAD + +DS+GRT LH A G+ EV
Sbjct: 74 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV 119
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
+HH A G E +K ++ GAD + DS+GRT L A +G
Sbjct: 107 LHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHG 147
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
G+ + +K+ + GAD + DS+GRT LH A G+ EV
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVV 53
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
+H+ A G E +K ++ GAD + +DS+GRT LH+A G+ E+
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV 86
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
+H+ A G E +K ++ GAD + +DS+GRT LH+A G+ E+
Sbjct: 74 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIV 119
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 240 GDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
G+ + +K+ + GAD + DS+GRT LH+A G+ E+
Sbjct: 15 GNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIV 53
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
+H+ A G E +K ++ GAD + DS+GRT L A +G
Sbjct: 107 LHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHG 147
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 32.7 bits (73), Expect = 0.20, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
AGAD + N + +H A G E +K L AGAD + +D GRT LH A G +
Sbjct: 24 AGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81
Score = 32.3 bits (72), Expect = 0.33, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E +K L AGAD + +D GRT LH A G +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 48
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 14/127 (11%)
Query: 155 DQIEERMAKIKEDPSL--KPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATT 212
D +E M ++ P L +P+ E+ G + + N L + A G +V AT
Sbjct: 48 DNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATG 107
Query: 213 SADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALH----- 267
S + G S A VG E ++ + GAD +DS G T LH
Sbjct: 108 SVFHYRPHNLIYYGEHPLSF---AACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQ 164
Query: 268 ----FAC 270
FAC
Sbjct: 165 PNKTFAC 171
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
+H A G E +K L+ GAD + +DS+G+T LH A G+ EV
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV 86
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
+H A G E +K L+ GAD + +DS+G+T LH A G+ EV
Sbjct: 74 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVV 119
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
A G+ + +K+ L GAD + DS+G+T LH A G+ EV
Sbjct: 12 AENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVV 53
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
+H A G E +K L+ GAD + DS+GRT L A +G
Sbjct: 107 LHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHG 147
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
E+++H + GD ++ L G+D + +D G T LH AC +G +
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHL 56
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E +K L AGAD + +D GRT LH A G +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 48
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E +K L AGAD + +D GRT LH A G +
Sbjct: 39 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 81
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E +K L AGAD + +D GRT LH A G +
Sbjct: 72 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 114
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
E+E +H A++ D + +K L +G D + D +G TAL++A G
Sbjct: 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSG 106
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A+ G E ++ L GAD + D++G T LH A YG +
Sbjct: 84 LHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHL 126
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC--GYGEVC 276
+H+ A G AE +K L+ GAD + +G T LH A G+ E+
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 227 NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+E+ +H A G + ++ + G ++ G TALH AC +G V
Sbjct: 18 DENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCV 66
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E ++ L GAD + DS GRT LH A G +
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHL 93
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274
D++ +H AS G + ++ L AD + + G LH+AC +G+
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274
D++ +H AS G + ++ L AD + + G LH+AC +G+
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A+VG E ++ L GAD + D+ G T LH A G +
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHL 81
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H AS+G E ++ L GAD + +D+ G T L+ A +G +
Sbjct: 72 LHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHL 114
>pdb|2YCN|A Chain A, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCN|B Chain B, Y71f Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|2EZ2|A Chain A, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ2|B Chain B, Apo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLF|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLF|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Alanine
pdb|2VLH|A Chain A, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
pdb|2YCT|A Chain A, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
pdb|2YCT|B Chain B, Tyrosine Phenol-Lyase From Citrobacter Freundii In Complex
With Pyridine N-Oxide And The Quinonoid Intermediate
Formed With L-Alanine
Length = 456
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|2EZ1|A Chain A, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2EZ1|B Chain B, Holo Tyrosine Phenol-Lyase From Citrobacter Freundii At Ph
8.0
pdb|2VLH|B Chain B, Quinonoid Intermediate Of Citrobacter Freundii Tyrosine
Phenol-Lyase Formed With Methionine
Length = 456
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 229 DESI--VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA--CGYGEVC 276
DE I +H+ G E +K + G + + DS+G T LH A C +VC
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC 119
>pdb|2YCP|A Chain A, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|B Chain B, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|C Chain C, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
pdb|2YCP|D Chain D, F448h Mutant Of Tyrosine Phenol-Lyase From Citrobacter
Freundii In Complex With Quinonoid Intermediate Formed
With 3-Fluoro-L-Tyrosine
Length = 456
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDES---IVHHTASVGD 241
+++L EA G+ V DAT +NA + +E G E++S IVH S D
Sbjct: 200 VRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYAD 249
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 229 DESI--VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA--CGYGEVC 276
DE I +H+ G E +K + G + + DS+G T LH A C +VC
Sbjct: 68 DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC 119
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270
++ +H A +G+A ++ AAGA + G TALH AC
Sbjct: 46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC 86
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270
++ +H A +G+A ++ AAGA + G TALH AC
Sbjct: 46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC 86
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270
+D ++ S GD E + L GAD + + +G TALH AC
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC 81
>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5V|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With Glucose-1-Phosphate
pdb|1L5W|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L5W|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltotetraose
pdb|1L6I|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|1L6I|B Chain B, Crystal Structure Of The Maltodextrin Phosphorylase
Complexed With The Products Of The Enzymatic Reaction
Between Glucose-1-Phosphate And Maltopentaose
pdb|2ASV|A Chain A, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2ASV|B Chain B, X-Ray Studies On Protein Complexes: Enzymatic Catalysis In
Crystals Of E. Coli Maltodextrin Phosphorylase (Malp)
pdb|2AV6|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AV6|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AW3|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase Complexes:
Recognition Of Substrates And Cathalitic Mechanism Of
Phosphorylase Family
pdb|2AZD|A Chain A, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
pdb|2AZD|B Chain B, X-Ray Studies On Maltodextrin Phosphorylase (Malp)
Complexes: Recognition Of Substrates And Catalytic
Mechanism Of Phosphorylase Family
Length = 796
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 202 MGLAVGGDATT-SADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD 254
M LA+ G T + D A + AE+VG E+ I HT E +K LA G D
Sbjct: 644 MKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHT-----VEQVKAILAKGYD 692
>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1QM5|B Chain B, Phosphorylase Recognition And Phosphorylysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|A Chain A, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
pdb|1E4O|B Chain B, Phosphorylase Recognition And Phosphorolysis Of Its
Oligosaccharide Substrate: Answers To A Long Outstanding
Question
Length = 796
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 202 MGLAVGGDATT-SADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD 254
M LA+ G T + D A + AE+VG E+ I HT E +K LA G D
Sbjct: 644 MKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHT-----VEQVKAILAKGYD 692
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+++H A G + L+ L AD + ED+EG LH A G +
Sbjct: 72 AVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273
+H A G E ++ L GAD + DS+G T LH A +G
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWG 124
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E ++ L GAD D D G T LH A +G +
Sbjct: 51 LHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHL 93
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E ++ L GAD + D GRT LH A G +
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHL 93
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274
S G + +K LA AD + +D +G TAL AC +G
Sbjct: 191 VSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGH 228
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270
D + +H A+ G+ + + L A + +D+EG T LH AC
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270
D + +H A+ G+ + + L A + +D+EG T LH AC
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 243 EGLKNALAAGADKDEEDSEGRTALHFAC--GYGEV 275
E +K + AGA D +D+EG T LH A G+ EV
Sbjct: 58 EAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV 92
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 17/103 (16%)
Query: 188 YWNDKDVLQKLGEAMGLAVGGDATTSADNA---GADEAEEVGN----EDESIVHHTASVG 240
+ N+K V QK+ + G+ +G D A+ GA +GN +++ ++ H +G
Sbjct: 207 FANEKGVWQKIAQIGGVTIGDDVEIGANTTIDRGALSDTLIGNGVKLDNQIMIAHNVQIG 266
Query: 241 DAEGLKNALAAGADKDEEDSEGRTALHFACGYG-----EVCSN 278
D A+AA GR + A G G E+C N
Sbjct: 267 D----HTAMAACVGISGSAKIGRHCM-LAGGVGLVGHIEICDN 304
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E ++ L GAD + D GRT LH A G +
Sbjct: 51 LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHL 93
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A +G E ++ L GAD + D++G T LH A G +
Sbjct: 51 LHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHL 93
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A +G E ++ L GAD + ED+ G T LH A G +
Sbjct: 51 LHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHL 93
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVCS 277
L AG D + D G T LH AC G + S
Sbjct: 62 LGAGCDPELRDFRGNTPLHLACEQGCLAS 90
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 220 DEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
D + GN +++H A G + L+ L AD + ED+EG LH A G +
Sbjct: 64 DLKDRTGN---AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+++H A G + L+ L AD + ED+EG LH A G +
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
A G + ++ +A GAD + D+ G T LH A YG +
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHL 60
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+++H A G + L+ L AD + ED+EG LH A G +
Sbjct: 72 AVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 249 LAAGADKDEEDSEGRTALHFACGYGEVCS 277
L AG D + D G T LH AC G + S
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLAS 93
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
A G + ++ +A GAD + D+ G T LH A YG +
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHL 60
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 236 TASVGDAEGLKNALAAGADKDEEDSEG-RTALHFACGY 272
A +G + ++ AGAD D D G TALH A GY
Sbjct: 83 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270
+H A+ G+ + + L A + +D+EG T LH AC
Sbjct: 143 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 180
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+++H A G + L+ L AD + ED+EG LH A G +
Sbjct: 72 AVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHL 116
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270
E+ +H A ++ K L A AD + +D+ GRT LH A
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E ++ L AGAD + +D +G T LH A G +
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 81
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E ++ L AGAD + +D +G T LH A G +
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 114
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270
+H A+ G+ + + L A + +D+EG T LH AC
Sbjct: 144 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC 181
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 237 ASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
A G E ++ L GAD + D EG T LH A +G +
Sbjct: 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 230 ESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270
E+ +H A ++ K L A AD + +D+ GRT LH A
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 99
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 60 AMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVM 119
+SGL N L E+ A + +NS+ ++ ++G + +E + Y TM +
Sbjct: 41 ILSGLTNQLFEVGLKEETANN--YNSIRTRVLFRIYGKHVDELYNTISEFEVYKTMSKYK 98
Query: 120 QNPQFMTMAE--RLGNALMQDPSMSHMMESLTNPT 152
PQ + R+ L DP ++ L NPT
Sbjct: 99 IAPQLLNTFNGGRIEEWLYGDPL---RIDDLKNPT 130
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E ++ L GAD + +DS G T LH A G +
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHL 93
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E ++ L AGAD + +D +G T LH A G +
Sbjct: 39 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 81
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 233 VHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275
+H A G E ++ L AGAD + +D +G T LH A G +
Sbjct: 72 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHL 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.306 0.124 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,726,159
Number of Sequences: 62578
Number of extensions: 289199
Number of successful extensions: 988
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 202
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (24.3 bits)