Query 023608
Match_columns 280
No_of_seqs 333 out of 1923
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:18:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13857 Ank_5: Ankyrin repeat 99.6 3.9E-15 8.5E-20 105.0 4.7 55 215-269 1-56 (56)
2 KOG4412 26S proteasome regulat 99.5 8.8E-14 1.9E-18 119.6 8.8 82 190-276 105-186 (226)
3 KOG4412 26S proteasome regulat 99.4 2.8E-13 6E-18 116.6 7.6 83 189-276 70-153 (226)
4 PF12796 Ank_2: Ankyrin repeat 99.4 5.5E-13 1.2E-17 100.9 7.5 69 204-276 5-73 (89)
5 PHA02743 Viral ankyrin protein 99.4 1.2E-12 2.6E-17 111.5 9.7 100 172-276 38-142 (166)
6 KOG0509 Ankyrin repeat and DHH 99.3 2.3E-12 5.1E-17 127.4 8.7 70 205-274 121-190 (600)
7 PHA02791 ankyrin-like protein; 99.3 5.1E-12 1.1E-16 117.0 10.5 72 205-276 70-142 (284)
8 PHA02743 Viral ankyrin protein 99.3 2.5E-12 5.3E-17 109.5 7.5 84 188-276 17-108 (166)
9 PHA02795 ankyrin-like protein; 99.3 5.1E-12 1.1E-16 122.9 10.5 71 205-275 197-267 (437)
10 PF13637 Ank_4: Ankyrin repeat 99.3 2.6E-12 5.6E-17 89.4 4.5 48 229-276 1-48 (54)
11 PHA02741 hypothetical protein; 99.3 1.9E-11 4.1E-16 104.1 10.6 68 209-276 77-146 (169)
12 PHA02791 ankyrin-like protein; 99.3 1.4E-11 3.1E-16 114.0 10.5 81 189-276 28-108 (284)
13 PHA02874 ankyrin repeat protei 99.3 1.4E-11 3.1E-16 119.2 10.7 72 205-276 133-204 (434)
14 PHA02946 ankyin-like protein; 99.3 1E-11 2.3E-16 121.4 9.8 68 206-273 49-116 (446)
15 PLN03192 Voltage-dependent pot 99.3 3.6E-11 7.9E-16 125.6 14.1 100 172-276 539-669 (823)
16 PHA02875 ankyrin repeat protei 99.3 1.5E-11 3.3E-16 117.8 10.4 72 205-276 111-182 (413)
17 PHA02878 ankyrin repeat protei 99.3 1.7E-11 3.6E-16 120.1 10.6 95 173-272 149-244 (477)
18 PHA02741 hypothetical protein; 99.3 1.2E-11 2.5E-16 105.4 7.9 83 189-276 19-112 (169)
19 PHA03095 ankyrin-like protein; 99.3 2.2E-11 4.8E-16 118.0 10.5 99 173-276 204-304 (471)
20 PHA02884 ankyrin repeat protei 99.3 3.5E-11 7.7E-16 112.2 11.2 99 172-275 47-150 (300)
21 PHA02736 Viral ankyrin protein 99.3 1.3E-11 2.9E-16 102.9 7.6 67 210-276 72-140 (154)
22 KOG0512 Fetal globin-inducing 99.3 2.1E-11 4.4E-16 104.6 8.6 94 175-273 80-174 (228)
23 KOG0508 Ankyrin repeat protein 99.2 6.4E-12 1.4E-16 120.9 5.8 72 205-276 126-197 (615)
24 PHA02798 ankyrin-like protein; 99.2 3.1E-11 6.7E-16 118.8 10.8 106 169-274 49-157 (489)
25 PHA02859 ankyrin repeat protei 99.2 6.1E-11 1.3E-15 104.6 11.0 98 172-272 104-202 (209)
26 KOG0195 Integrin-linked kinase 99.2 8.9E-12 1.9E-16 114.0 5.7 70 205-274 43-112 (448)
27 PHA02884 ankyrin repeat protei 99.2 2.9E-11 6.2E-16 112.8 9.1 72 205-276 42-118 (300)
28 PHA02859 ankyrin repeat protei 99.2 6.1E-11 1.3E-15 104.6 10.5 103 171-275 66-172 (209)
29 PHA03095 ankyrin-like protein; 99.2 5.4E-11 1.2E-15 115.4 10.7 63 208-270 62-125 (471)
30 KOG0514 Ankyrin repeat protein 99.2 4E-11 8.7E-16 112.4 9.2 124 147-276 297-421 (452)
31 KOG4177 Ankyrin [Cell wall/mem 99.2 3E-11 6.6E-16 127.6 9.1 82 198-279 542-623 (1143)
32 PHA03100 ankyrin repeat protei 99.2 5.6E-11 1.2E-15 115.6 10.3 72 205-276 224-297 (480)
33 PLN03192 Voltage-dependent pot 99.2 3.5E-11 7.6E-16 125.7 9.1 72 205-276 534-605 (823)
34 PTZ00322 6-phosphofructo-2-kin 99.2 3.9E-11 8.4E-16 122.8 9.1 73 204-276 90-162 (664)
35 PHA02875 ankyrin repeat protei 99.2 9.9E-11 2.1E-15 112.2 11.1 100 172-276 116-216 (413)
36 PHA02989 ankyrin repeat protei 99.2 8.8E-11 1.9E-15 115.7 10.3 68 208-276 236-303 (494)
37 PHA02917 ankyrin-like protein; 99.2 1.1E-10 2.4E-15 119.4 11.3 103 171-276 116-243 (661)
38 KOG0509 Ankyrin repeat and DHH 99.2 7.6E-11 1.7E-15 116.8 9.3 72 204-275 86-158 (600)
39 PHA02716 CPXV016; CPX019; EVM0 99.2 3.8E-10 8.2E-15 116.5 13.6 97 172-271 156-256 (764)
40 PHA02946 ankyin-like protein; 99.2 1.8E-10 3.9E-15 112.7 10.7 97 172-274 53-152 (446)
41 KOG0515 p53-interacting protei 99.1 5.7E-11 1.2E-15 115.6 6.7 71 205-275 559-629 (752)
42 KOG0512 Fetal globin-inducing 99.1 1.3E-10 2.7E-15 99.8 7.8 72 205-276 72-144 (228)
43 PHA02874 ankyrin repeat protei 99.1 2.9E-10 6.2E-15 110.1 11.3 96 173-273 139-234 (434)
44 KOG4177 Ankyrin [Cell wall/mem 99.1 7.4E-11 1.6E-15 124.7 7.5 72 205-276 516-587 (1143)
45 PHA03100 ankyrin repeat protei 99.1 2.9E-10 6.2E-15 110.7 9.9 72 205-276 117-190 (480)
46 PHA02798 ankyrin-like protein; 99.1 3.9E-10 8.4E-15 111.1 10.2 69 207-276 237-305 (489)
47 PHA02878 ankyrin repeat protei 99.1 5.1E-10 1.1E-14 109.7 10.3 62 208-271 247-309 (477)
48 PF12796 Ank_2: Ankyrin repeat 99.1 7.9E-10 1.7E-14 83.5 8.9 63 192-259 27-89 (89)
49 PHA02716 CPXV016; CPX019; EVM0 99.1 7.2E-10 1.6E-14 114.4 10.7 65 207-271 295-361 (764)
50 PHA02876 ankyrin repeat protei 99.1 6.7E-10 1.4E-14 113.5 10.4 72 205-276 154-225 (682)
51 KOG0508 Ankyrin repeat protein 99.1 8.6E-11 1.9E-15 113.3 3.5 79 198-276 86-164 (615)
52 PHA02989 ankyrin repeat protei 99.0 8.6E-10 1.9E-14 108.7 9.8 61 210-270 89-153 (494)
53 KOG4214 Myotrophin and similar 99.0 3.6E-10 7.8E-15 87.9 4.9 75 188-267 31-105 (117)
54 PHA02876 ankyrin repeat protei 99.0 2.5E-09 5.5E-14 109.3 11.0 64 210-273 423-487 (682)
55 PHA02917 ankyrin-like protein; 99.0 2.6E-09 5.5E-14 109.4 10.5 67 208-274 431-498 (661)
56 PHA02792 ankyrin-like protein; 98.9 3.3E-09 7.2E-14 107.2 10.0 62 210-271 391-452 (631)
57 COG0666 Arp FOG: Ankyrin repea 98.9 4.1E-09 8.9E-14 89.3 8.0 66 209-274 124-192 (235)
58 COG0666 Arp FOG: Ankyrin repea 98.9 7.3E-09 1.6E-13 87.8 8.6 72 205-276 82-161 (235)
59 KOG0502 Integral membrane anky 98.9 8.4E-10 1.8E-14 97.8 2.3 73 202-274 199-271 (296)
60 PHA02730 ankyrin-like protein; 98.9 8.9E-09 1.9E-13 104.9 10.0 63 210-272 443-506 (672)
61 PHA02736 Viral ankyrin protein 98.9 1.4E-09 3E-14 90.7 3.4 55 222-276 48-106 (154)
62 PHA02730 ankyrin-like protein; 98.9 1.3E-08 2.8E-13 103.7 11.0 106 169-276 357-476 (672)
63 PHA02795 ankyrin-like protein; 98.8 9.8E-09 2.1E-13 100.1 9.1 72 205-276 158-235 (437)
64 KOG4214 Myotrophin and similar 98.8 1.4E-08 3E-13 79.1 7.9 72 204-276 10-81 (117)
65 KOG0510 Ankyrin repeat protein 98.8 6.5E-09 1.4E-13 105.7 7.8 97 174-275 289-390 (929)
66 KOG0502 Integral membrane anky 98.8 7.9E-09 1.7E-13 91.7 6.8 80 197-276 161-240 (296)
67 KOG0195 Integrin-linked kinase 98.8 7.4E-09 1.6E-13 95.1 6.4 94 171-269 47-140 (448)
68 PF13637 Ank_4: Ankyrin repeat 98.8 1.2E-08 2.7E-13 70.7 5.8 45 205-249 10-54 (54)
69 cd00204 ANK ankyrin repeats; 98.8 6.5E-08 1.4E-12 74.8 10.6 97 174-275 23-119 (126)
70 cd00204 ANK ankyrin repeats; 98.8 3.5E-08 7.6E-13 76.3 8.9 72 205-276 16-87 (126)
71 PHA02792 ankyrin-like protein; 98.8 2E-08 4.3E-13 101.6 9.2 72 205-276 348-424 (631)
72 KOG0510 Ankyrin repeat protein 98.8 1.9E-08 4.1E-13 102.4 8.9 78 193-275 275-354 (929)
73 KOG0505 Myosin phosphatase, re 98.8 8.7E-09 1.9E-13 100.6 5.8 72 205-276 49-120 (527)
74 PF13606 Ank_3: Ankyrin repeat 98.8 1.1E-08 2.4E-13 63.3 4.0 30 228-257 1-30 (30)
75 PF00023 Ank: Ankyrin repeat H 98.7 2E-08 4.3E-13 63.0 4.4 33 228-260 1-33 (33)
76 KOG0514 Ankyrin repeat protein 98.7 2.8E-08 6.1E-13 93.6 7.2 124 152-276 237-387 (452)
77 TIGR00870 trp transient-recept 98.7 2.1E-08 4.5E-13 103.7 6.8 78 191-273 128-219 (743)
78 KOG0505 Myosin phosphatase, re 98.6 5.8E-08 1.2E-12 95.0 6.3 63 214-276 183-245 (527)
79 KOG0507 CASK-interacting adapt 98.6 3.3E-08 7.1E-13 100.0 3.1 82 190-276 48-129 (854)
80 KOG3676 Ca2+-permeable cation 98.5 4E-07 8.7E-12 92.9 9.6 80 193-272 181-283 (782)
81 KOG1710 MYND Zn-finger and ank 98.5 3.1E-07 6.7E-12 84.5 6.6 101 171-276 14-126 (396)
82 KOG1710 MYND Zn-finger and ank 98.4 8.4E-07 1.8E-11 81.6 8.7 70 207-276 23-93 (396)
83 KOG0515 p53-interacting protei 98.4 3.4E-07 7.4E-12 89.7 6.4 63 205-267 592-655 (752)
84 PTZ00322 6-phosphofructo-2-kin 98.4 8.5E-07 1.8E-11 91.1 9.4 92 174-270 98-196 (664)
85 KOG0783 Uncharacterized conser 98.3 5.4E-07 1.2E-11 92.1 4.9 77 195-271 51-128 (1267)
86 KOG0818 GTPase-activating prot 98.3 1.5E-06 3.3E-11 84.6 7.7 73 204-276 141-214 (669)
87 TIGR00870 trp transient-recept 98.3 9.5E-07 2.1E-11 91.4 6.5 72 205-276 184-271 (743)
88 KOG0506 Glutaminase (contains 98.3 4.1E-07 9E-12 88.1 3.0 72 205-276 515-587 (622)
89 KOG0507 CASK-interacting adapt 98.2 1.7E-06 3.8E-11 87.8 5.8 72 205-276 91-162 (854)
90 KOG0522 Ankyrin repeat protein 98.2 2.2E-06 4.9E-11 84.0 6.2 59 217-275 43-101 (560)
91 KOG0783 Uncharacterized conser 98.0 2E-06 4.3E-11 88.1 0.4 56 221-276 44-100 (1267)
92 KOG3676 Ca2+-permeable cation 97.9 1.3E-05 2.8E-10 82.1 6.1 73 204-276 248-322 (782)
93 KOG0705 GTPase-activating prot 97.9 1.6E-05 3.4E-10 78.9 5.2 66 209-274 637-706 (749)
94 PF13857 Ank_5: Ankyrin repeat 97.8 2.5E-05 5.4E-10 54.7 4.0 43 189-236 14-56 (56)
95 KOG4369 RTK signaling protein 97.7 1.2E-05 2.6E-10 84.7 1.4 80 197-276 758-838 (2131)
96 KOG0782 Predicted diacylglycer 97.7 8.4E-05 1.8E-09 73.8 6.3 93 178-275 886-980 (1004)
97 KOG0511 Ankyrin repeat protein 97.5 0.00017 3.7E-09 68.7 6.5 61 205-265 45-105 (516)
98 KOG0521 Putative GTPase activa 97.4 0.00016 3.4E-09 75.6 4.1 72 203-274 663-734 (785)
99 KOG2384 Major histocompatibili 97.3 0.00021 4.6E-09 62.4 4.2 55 220-274 3-58 (223)
100 KOG0511 Ankyrin repeat protein 97.2 0.00043 9.2E-09 66.1 4.5 46 231-276 38-83 (516)
101 KOG4369 RTK signaling protein 97.2 0.00023 5E-09 75.4 2.7 45 210-254 838-882 (2131)
102 smart00248 ANK ankyrin repeats 97.0 0.0014 3E-08 36.8 4.0 29 228-256 1-29 (30)
103 smart00727 STI1 Heat shock cha 97.0 0.00093 2E-08 43.8 3.4 19 63-81 6-24 (41)
104 KOG0520 Uncharacterized conser 96.9 0.00037 8.1E-09 73.3 1.2 65 210-275 588-654 (975)
105 KOG2505 Ankyrin repeat protein 96.7 0.0041 8.9E-08 61.3 6.6 62 209-270 404-471 (591)
106 KOG0782 Predicted diacylglycer 96.4 0.0028 6E-08 63.3 3.8 57 217-273 887-945 (1004)
107 KOG0521 Putative GTPase activa 96.4 0.002 4.4E-08 67.5 3.0 61 217-277 642-704 (785)
108 KOG0553 TPR repeat-containing 96.3 0.0063 1.4E-07 56.7 5.4 62 55-132 219-292 (304)
109 PF13606 Ank_3: Ankyrin repeat 96.3 0.0018 4E-08 39.7 1.2 16 261-276 1-16 (30)
110 smart00727 STI1 Heat shock cha 96.3 0.0014 3.1E-08 42.9 0.5 33 50-85 6-39 (41)
111 KOG0705 GTPase-activating prot 96.1 0.017 3.8E-07 57.9 7.3 51 205-255 670-720 (749)
112 KOG0506 Glutaminase (contains 95.9 0.0048 1E-07 60.5 2.6 52 226-277 503-554 (622)
113 KOG0520 Uncharacterized conser 95.8 0.0079 1.7E-07 63.6 3.9 61 215-275 627-693 (975)
114 KOG0522 Ankyrin repeat protein 95.0 0.046 1E-06 54.4 5.7 48 204-251 63-110 (560)
115 KOG2384 Major histocompatibili 94.8 0.072 1.6E-06 46.9 5.9 69 197-265 13-82 (223)
116 PF06757 Ins_allergen_rp: Inse 94.0 0.42 9.2E-06 41.2 9.0 128 53-195 30-159 (179)
117 KOG0011 Nucleotide excision re 93.4 0.41 8.8E-06 45.3 8.3 29 64-92 219-248 (340)
118 PF00023 Ank: Ankyrin repeat H 92.7 0.2 4.4E-06 30.7 3.7 23 205-227 11-33 (33)
119 KOG0010 Ubiquitin-like protein 91.8 1 2.2E-05 44.8 9.0 58 60-141 148-207 (493)
120 KOG0818 GTPase-activating prot 89.9 2 4.2E-05 43.0 9.0 47 205-251 176-222 (669)
121 KOG3609 Receptor-activated Ca2 89.0 0.8 1.7E-05 48.1 5.9 55 204-258 96-160 (822)
122 KOG0010 Ubiquitin-like protein 84.2 3.9 8.4E-05 40.8 7.5 19 62-81 348-366 (493)
123 KOG3609 Receptor-activated Ca2 83.8 2.2 4.9E-05 44.9 5.9 79 191-276 57-145 (822)
124 PF09280 XPC-binding: XPC-bind 82.3 4.5 9.7E-05 28.8 5.3 29 63-91 3-32 (59)
125 PF07319 DnaI_N: Primosomal pr 79.7 2.6 5.6E-05 32.6 3.7 51 114-164 7-57 (94)
126 KOG2857 Predicted MYND Zn-fing 77.8 13 0.00027 31.3 7.3 54 76-144 92-145 (157)
127 KOG2857 Predicted MYND Zn-fing 72.7 2.9 6.2E-05 35.1 2.3 35 58-92 87-134 (157)
128 TIGR00601 rad23 UV excision re 70.5 13 0.00028 36.1 6.6 46 115-169 248-294 (378)
129 KOG0548 Molecular co-chaperone 66.1 15 0.00033 37.0 6.2 50 62-134 484-533 (539)
130 KOG0553 TPR repeat-containing 65.7 8.7 0.00019 36.1 4.2 29 64-92 214-244 (304)
131 PF05974 DUF892: Domain of unk 56.5 48 0.001 27.9 6.9 97 139-250 34-134 (159)
132 PF11212 DUF2999: Protein of u 56.1 28 0.00062 25.9 4.6 48 65-125 13-60 (82)
133 PF07319 DnaI_N: Primosomal pr 55.7 9.2 0.0002 29.5 2.1 36 70-129 4-39 (94)
134 PF06757 Ins_allergen_rp: Inse 54.9 81 0.0018 27.0 8.1 114 52-183 41-171 (179)
135 KOG2505 Ankyrin repeat protein 54.8 37 0.00081 34.2 6.6 51 191-249 430-480 (591)
136 cd07909 YciF YciF bacterial st 51.1 79 0.0017 26.5 7.2 101 134-250 27-131 (147)
137 TIGR00601 rad23 UV excision re 49.3 28 0.0006 33.8 4.8 31 62-92 249-280 (378)
138 TIGR02302 aProt_lowcomp conser 46.3 23 0.0005 38.0 4.0 10 83-92 596-605 (851)
139 KOG1308 Hsp70-interacting prot 44.8 60 0.0013 31.4 6.1 17 61-81 321-337 (377)
140 KOG1308 Hsp70-interacting prot 44.1 36 0.00078 32.8 4.5 8 74-81 321-328 (377)
141 COG3685 Uncharacterized protei 41.2 1.7E+02 0.0036 25.3 7.7 96 138-249 37-136 (167)
142 PRK08939 primosomal protein Dn 40.2 52 0.0011 30.8 5.0 49 113-161 6-54 (306)
143 KOG3836 HLH transcription fact 40.1 10 0.00023 38.7 0.3 53 211-263 411-463 (605)
144 PF13779 DUF4175: Domain of un 39.1 41 0.00089 36.0 4.5 17 106-122 538-554 (820)
145 PF06128 Shigella_OspC: Shigel 37.3 79 0.0017 29.0 5.3 45 210-254 231-279 (284)
146 PF03672 UPF0154: Uncharacteri 37.2 58 0.0013 23.6 3.7 20 73-92 22-46 (64)
147 PF09280 XPC-binding: XPC-bind 32.9 41 0.00088 23.9 2.3 40 50-89 3-44 (59)
148 PF14181 YqfQ: YqfQ-like prote 31.0 1.1E+02 0.0024 26.2 5.1 6 122-127 86-91 (161)
149 PF06133 DUF964: Protein of un 29.4 2.6E+02 0.0056 21.3 7.5 15 117-131 28-42 (108)
150 cd00454 Trunc_globin Truncated 26.5 79 0.0017 24.4 3.3 28 121-148 9-36 (116)
151 PF13234 rRNA_proc-arch: rRNA- 25.4 1.7E+02 0.0038 26.4 5.8 58 100-165 197-262 (268)
152 PF03158 DUF249: Multigene fam 24.1 93 0.002 27.4 3.4 37 232-274 146-182 (192)
153 PF01152 Bac_globin: Bacterial 22.2 1.2E+02 0.0027 23.6 3.7 26 121-146 9-34 (120)
154 PF05524 PEP-utilisers_N: PEP- 22.2 1.6E+02 0.0035 23.2 4.4 23 56-78 68-90 (123)
155 PF03713 DUF305: Domain of unk 21.1 2.2E+02 0.0047 23.3 5.0 27 66-92 27-55 (151)
156 PF07511 DUF1525: Protein of u 21.1 2E+02 0.0043 23.2 4.6 30 102-132 38-67 (114)
157 TIGR02302 aProt_lowcomp conser 20.2 1.7E+02 0.0037 31.6 5.1 14 108-121 570-583 (851)
No 1
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.55 E-value=3.9e-15 Score=104.97 Aligned_cols=55 Identities=25% Similarity=0.398 Sum_probs=33.7
Q ss_pred HHhCC-CCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608 215 DNAGA-DEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA 269 (280)
Q Consensus 215 Ll~~g-advn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A 269 (280)
|++.| ++++.+|..|.||||+||.+|+.++|++|++.|++++.+|.+|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 46666 89999999999999999999999999999999999999999999999997
No 2
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=8.8e-14 Score=119.62 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=72.5
Q ss_pred CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608 190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA 269 (280)
Q Consensus 190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A 269 (280)
...+.+|..+ .-+..+++.+|+++|+.|+.+|+.|.||||.|+..|.++++++||..|+.+|.+|+.|+||||+|
T Consensus 105 ~G~T~LHyAa-----gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~a 179 (226)
T KOG4412|consen 105 GGQTCLHYAA-----GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHA 179 (226)
T ss_pred CCcceehhhh-----cCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHH
Confidence 3344556555 66788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCC
Q 023608 270 CGYGEVC 276 (280)
Q Consensus 270 a~~G~~e 276 (280)
...||.+
T Consensus 180 l~e~~~d 186 (226)
T KOG4412|consen 180 LAEGHPD 186 (226)
T ss_pred HhccCch
Confidence 7777765
No 3
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.8e-13 Score=116.60 Aligned_cols=83 Identities=22% Similarity=0.194 Sum_probs=74.4
Q ss_pred cCchhHHHHhHHhhhhccCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 023608 189 WNDKDVLQKLGEAMGLAVGGDATTSADNAG-ADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALH 267 (280)
Q Consensus 189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~-gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH 267 (280)
...+..+|..+ +.|..++|+.|+.+ |+|+|.....|+|+||||+.+|+.+|+++|+++|+.|+.+|+.|.||||
T Consensus 70 daGWtPlhia~-----s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplH 144 (226)
T KOG4412|consen 70 DAGWTPLHIAA-----SNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLH 144 (226)
T ss_pred ccCCchhhhhh-----hcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhH
Confidence 33445566666 88899999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCC
Q 023608 268 FACGYGEVC 276 (280)
Q Consensus 268 ~Aa~~G~~e 276 (280)
-|+..|.++
T Consensus 145 RAAavGklk 153 (226)
T KOG4412|consen 145 RAAAVGKLK 153 (226)
T ss_pred HHHhccchh
Confidence 999988765
No 4
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.42 E-value=5.5e-13 Score=100.92 Aligned_cols=69 Identities=26% Similarity=0.302 Sum_probs=63.1
Q ss_pred hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
+..++.++++.|++.+.+++. |+||||+||.+|+.+++++|+++|++++.+|.+|+||||+|+.+|+++
T Consensus 5 ~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 73 (89)
T PF12796_consen 5 AQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE 73 (89)
T ss_dssp HHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred HHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence 467888999999999998887 899999999999999999999999999999999999999999998765
No 5
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.41 E-value=1.2e-12 Score=111.48 Aligned_cols=100 Identities=11% Similarity=0.009 Sum_probs=76.1
Q ss_pred HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCC---HHHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHH
Q 023608 172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGG---DATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKN 247 (280)
Q Consensus 172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~---~~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~ 247 (280)
.+++.+.+.+.....+.......+|..+ ..+. ..++++|++.|+++|.+| ..|.||||+|+.+|+.+++++
T Consensus 38 ~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa-----~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~ 112 (166)
T PHA02743 38 EVAPFISGDGHLLHRYDHHGRQCTHMVA-----WYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEW 112 (166)
T ss_pred HHHHHHhhcchhhhccCCCCCcHHHHHH-----HhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHH
Confidence 3444444444333333344445555544 3333 245899999999999998 589999999999999999999
Q ss_pred HHH-cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 248 ALA-AGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 248 LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
|+. .|++++.+|..|+||||+|+..++.+
T Consensus 113 Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~ 142 (166)
T PHA02743 113 LCRQLGVNLGAINYQHETAYHIAYKMRDRR 142 (166)
T ss_pred HHhccCCCccCcCCCCCCHHHHHHHcCCHH
Confidence 995 79999999999999999999988754
No 6
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.34 E-value=2.3e-12 Score=127.39 Aligned_cols=70 Identities=23% Similarity=0.211 Sum_probs=38.2
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~ 274 (280)
..|+..+|++|+++|+|++.+|.+|.|+||+|+..|+.-+|-+||.+|+|+|.+|.+|+||||||+.+|+
T Consensus 121 r~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~ 190 (600)
T KOG0509|consen 121 RNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGF 190 (600)
T ss_pred HcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcc
Confidence 4444455555555555555555555555555555555555555555555555555555555555555544
No 7
>PHA02791 ankyrin-like protein; Provisional
Probab=99.34 E-value=5.1e-12 Score=116.99 Aligned_cols=72 Identities=8% Similarity=0.021 Sum_probs=62.0
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGR-TALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~-TPLH~Aa~~G~~e 276 (280)
..++.++++.|++.|++++.+|..|+||||+||..|+.++|++|+++|++++.++..|+ ||||+|+.+|+.+
T Consensus 70 ~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~e 142 (284)
T PHA02791 70 TLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS 142 (284)
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHH
Confidence 56778888999999999998888999999999999999999999999998888888875 7888888888764
No 8
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.34 E-value=2.5e-12 Score=109.52 Aligned_cols=84 Identities=14% Similarity=0.171 Sum_probs=69.4
Q ss_pred hcCchhHHHHhHHhhhhccCCH----HHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHH---HHHHHHcCCCCCCCC-
Q 023608 188 YWNDKDVLQKLGEAMGLAVGGD----ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEG---LKNALAAGADKDEED- 259 (280)
Q Consensus 188 ~~~d~~~l~~~~~~~g~~~g~~----~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~ei---vk~LL~~GAdvn~~D- 259 (280)
...+..++++++ ..++. ++++.|++.|++++.+|..|+||||+||.+|+.++ +++|+++|+++|.+|
T Consensus 17 ~~~~~~~l~~a~-----~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~ 91 (166)
T PHA02743 17 DEDEQNTFLRIC-----RTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINAREL 91 (166)
T ss_pred ccCCCcHHHHHH-----HcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCC
Confidence 344556666666 44554 56667889999999999999999999999988654 899999999999998
Q ss_pred CCCCcHHHHHHHcCCCC
Q 023608 260 SEGRTALHFACGYGEVC 276 (280)
Q Consensus 260 ~~G~TPLH~Aa~~G~~e 276 (280)
..|+||||+|+.+|+.+
T Consensus 92 ~~g~TpLh~A~~~g~~~ 108 (166)
T PHA02743 92 GTGNTLLHIAASTKNYE 108 (166)
T ss_pred CCCCcHHHHHHHhCCHH
Confidence 58999999999998754
No 9
>PHA02795 ankyrin-like protein; Provisional
Probab=99.34 E-value=5.1e-12 Score=122.87 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=67.1
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~ 275 (280)
..+..++++.|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|++
T Consensus 197 ~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~ 267 (437)
T PHA02795 197 EPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSV 267 (437)
T ss_pred hcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999863
No 10
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.30 E-value=2.6e-12 Score=89.43 Aligned_cols=48 Identities=35% Similarity=0.549 Sum_probs=40.0
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 229 DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 229 g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
|+||||+||..|+.+++++|+++|++++.+|.+|+||||+||.+|+++
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~ 48 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNID 48 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHH
Confidence 689999999999999999999999999999999999999999999864
No 11
>PHA02741 hypothetical protein; Provisional
Probab=99.30 E-value=1.9e-11 Score=104.10 Aligned_cols=68 Identities=12% Similarity=0.091 Sum_probs=63.2
Q ss_pred HHHHHHHHhCCCCccccCC-CCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 209 DATTSADNAGADEAEEVGN-EDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 209 ~~~v~~Ll~~gadvn~~D~-~g~TpLh~Aa~~G~~eivk~LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
.++++.|++.|+++|.++. .|+||||+|+..++.+++++|+. .|++++.+|..|+||||+|+..++.+
T Consensus 77 ~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~ 146 (169)
T PHA02741 77 AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVA 146 (169)
T ss_pred HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHH
Confidence 4789999999999999985 99999999999999999999998 59999999999999999999988753
No 12
>PHA02791 ankyrin-like protein; Provisional
Probab=99.29 E-value=1.4e-11 Score=114.02 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=71.5
Q ss_pred cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 023608 189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHF 268 (280)
Q Consensus 189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~ 268 (280)
....+.+|..+ ..++.++++.|++.|++++..+ ++||||+|+..|+.++|++|+.+|++++.+|..|+||||+
T Consensus 28 ~~G~TpLh~Aa-----~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~ 100 (284)
T PHA02791 28 VHGHSALYYAI-----ADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYY 100 (284)
T ss_pred CCCCcHHHHHH-----HcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 33445566555 6788899999999999998865 6899999999999999999999999999999999999999
Q ss_pred HHHcCCCC
Q 023608 269 ACGYGEVC 276 (280)
Q Consensus 269 Aa~~G~~e 276 (280)
||.+|+.+
T Consensus 101 Aa~~g~~e 108 (284)
T PHA02791 101 AVDSGNMQ 108 (284)
T ss_pred HHHcCCHH
Confidence 99999865
No 13
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.29 E-value=1.4e-11 Score=119.20 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=50.0
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+++
T Consensus 133 ~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~ 204 (434)
T PHA02874 133 KKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYA 204 (434)
T ss_pred HCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 455666777777777777777777777777777777777777777777777777777777777777666543
No 14
>PHA02946 ankyin-like protein; Provisional
Probab=99.29 E-value=1e-11 Score=121.42 Aligned_cols=68 Identities=15% Similarity=0.158 Sum_probs=50.6
Q ss_pred cCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 023608 206 VGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273 (280)
Q Consensus 206 ~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G 273 (280)
..+.++++.|++.|+++|.+|.+|+||||+||..|+.++|++||++|+++|.+|..|+||||+|+..+
T Consensus 49 ~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~ 116 (446)
T PHA02946 49 GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTD 116 (446)
T ss_pred CCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence 34556777777777777777777777777777777777777777777777777777777777776654
No 15
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.28 E-value=3.6e-11 Score=125.64 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=78.2
Q ss_pred HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHh-------------
Q 023608 172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTAS------------- 238 (280)
Q Consensus 172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~------------- 238 (280)
.+++.+.+.|.+.-.......+.+|.++ ..|+.++++.|+++|+++|.+|.+|+||||+|+.
T Consensus 539 ~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa-----~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~ 613 (823)
T PLN03192 539 ALLEELLKAKLDPDIGDSKGRTPLHIAA-----SKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHF 613 (823)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHH-----HcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhc
Confidence 4455556666555555555666777666 6688899999999999999999999999885554
Q ss_pred ------------------cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 239 ------------------VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 239 ------------------~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
.|+.+++++|+++|+++|.+|.+|+||||+|+..||.+
T Consensus 614 ~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~ 669 (823)
T PLN03192 614 ASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVD 669 (823)
T ss_pred CcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence 45556667788899999999999999999999998865
No 16
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.28 E-value=1.5e-11 Score=117.78 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=49.8
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..++.++++.|++.|++++.++..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+.+|+++
T Consensus 111 ~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~e 182 (413)
T PHA02875 111 ILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIA 182 (413)
T ss_pred HhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 445666777777777777777777777777777777777777777777777777777777777777666644
No 17
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.28 E-value=1.7e-11 Score=120.14 Aligned_cols=95 Identities=22% Similarity=0.205 Sum_probs=77.0
Q ss_pred HHHHHHcCChhhhhhhcC-chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608 173 ILDEIESGGPSAMMKYWN-DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA 251 (280)
Q Consensus 173 i~e~i~~~g~~al~~~~~-d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~ 251 (280)
+++.+.+.|...-..... ..+.+|.++ ..++.++++.|++.|++++..|..|+||||+|+..|+.+++++|++.
T Consensus 149 iv~~Ll~~gadin~~~~~~g~tpLh~A~-----~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ 223 (477)
T PHA02878 149 ITKLLLSYGADINMKDRHKGNTALHYAT-----ENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN 223 (477)
T ss_pred HHHHHHHcCCCCCccCCCCCCCHHHHHH-----hCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 555666666554444444 556666655 66788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHc
Q 023608 252 GADKDEEDSEGRTALHFACGY 272 (280)
Q Consensus 252 GAdvn~~D~~G~TPLH~Aa~~ 272 (280)
|++++.+|..|+||||+|+.+
T Consensus 224 ga~in~~d~~g~TpLh~A~~~ 244 (477)
T PHA02878 224 GASTDARDKCGNTPLHISVGY 244 (477)
T ss_pred CCCCCCCCCCCCCHHHHHHHh
Confidence 999999999999999999865
No 18
>PHA02741 hypothetical protein; Provisional
Probab=99.27 E-value=1.2e-11 Score=105.41 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=71.1
Q ss_pred cCchhHHHHhHHhhhhccCCHHHHHHHH------hCCCCccccCCCCCcHHHHHHhcCC----HHHHHHHHHcCCCCCCC
Q 023608 189 WNDKDVLQKLGEAMGLAVGGDATTSADN------AGADEAEEVGNEDESIVHHTASVGD----AEGLKNALAAGADKDEE 258 (280)
Q Consensus 189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll------~~gadvn~~D~~g~TpLh~Aa~~G~----~eivk~LL~~GAdvn~~ 258 (280)
....+.+|.++ ..|+.++++.|+ ..|++++.+|..|+||||+||..|+ .+++++|+.+|++++.+
T Consensus 19 ~~g~t~Lh~Aa-----~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~ 93 (169)
T PHA02741 19 SEGENFFHEAA-----RCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ 93 (169)
T ss_pred cCCCCHHHHHH-----HcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence 44556777666 678888888874 3468899999999999999999999 58999999999999999
Q ss_pred CC-CCCcHHHHHHHcCCCC
Q 023608 259 DS-EGRTALHFACGYGEVC 276 (280)
Q Consensus 259 D~-~G~TPLH~Aa~~G~~e 276 (280)
|. +|+||||+|+..++.+
T Consensus 94 ~~~~g~TpLh~A~~~~~~~ 112 (169)
T PHA02741 94 EMLEGDTALHLAAHRRDHD 112 (169)
T ss_pred CcCCCCCHHHHHHHcCCHH
Confidence 85 9999999999988764
No 19
>PHA03095 ankyrin-like protein; Provisional
Probab=99.26 E-value=2.2e-11 Score=118.02 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=78.2
Q ss_pred HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCC--HHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 023608 173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGG--DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA 250 (280)
Q Consensus 173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~--~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~ 250 (280)
+++.+...|.....+.....+.+|.++ ..+. ...++.|+..|+++|.+|..|+||||+|+..|+.++|++||+
T Consensus 204 i~~~Ll~~g~~~~~~d~~g~tpLh~Aa-----~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~ 278 (471)
T PHA03095 204 IVRELIRAGCDPAATDMLGNTPLHSMA-----TGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA 278 (471)
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHH-----hcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 344444444444444444555555554 2232 357888999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 251 AGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 251 ~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
+|++++.+|..|+||||+|+..|+.+
T Consensus 279 ~gad~n~~~~~g~tpl~~A~~~~~~~ 304 (471)
T PHA03095 279 LGADINAVSSDGNTPLSLMVRNNNGR 304 (471)
T ss_pred cCCCCcccCCCCCCHHHHHHHhCCHH
Confidence 99999999999999999999998864
No 20
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.26 E-value=3.5e-11 Score=112.18 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=78.0
Q ss_pred HHHHHHHcCChhhhhhh----cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCcccc-CCCCCcHHHHHHhcCCHHHHH
Q 023608 172 PILDEIESGGPSAMMKY----WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEV-GNEDESIVHHTASVGDAEGLK 246 (280)
Q Consensus 172 ~i~e~i~~~g~~al~~~----~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~-D~~g~TpLh~Aa~~G~~eivk 246 (280)
++++.+.+.|...-... ....+.+|.++ ..+..+++++|+++|+|+|.. +..|.||||+|+..++.++++
T Consensus 47 eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa-----~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivk 121 (300)
T PHA02884 47 DIIDAILKLGADPEAPFPLSENSKTNPLIYAI-----DCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLE 121 (300)
T ss_pred HHHHHHHHCCCCccccCcccCCCCCCHHHHHH-----HcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHH
Confidence 34455555555443321 12334555544 667889999999999999986 468999999999999999999
Q ss_pred HHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608 247 NALAAGADKDEEDSEGRTALHFACGYGEV 275 (280)
Q Consensus 247 ~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~ 275 (280)
+|+.+|++++.+|..|+||||+|+..++.
T Consensus 122 lLL~~GAdin~kd~~G~TpL~~A~~~~~~ 150 (300)
T PHA02884 122 ILLSYGADINIQTNDMVTPIELALMICNN 150 (300)
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHhCCh
Confidence 99999999999999999999999986543
No 21
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.26 E-value=1.3e-11 Score=102.92 Aligned_cols=67 Identities=9% Similarity=-0.050 Sum_probs=62.2
Q ss_pred HHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 210 ATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 210 ~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
+.++.|++.|++++.+| ..|+||||+|+..++.+++++|+. .|++++.+|..|+||||+|+..|+.+
T Consensus 72 e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~ 140 (154)
T PHA02736 72 EKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAK 140 (154)
T ss_pred HHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHH
Confidence 56889999999999998 599999999999999999999998 59999999999999999999988754
No 22
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.26 E-value=2.1e-11 Score=104.55 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=76.9
Q ss_pred HHHHcCChhhhhhhcCch-hHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 023608 175 DEIESGGPSAMMKYWNDK-DVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA 253 (280)
Q Consensus 175 e~i~~~g~~al~~~~~d~-~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GA 253 (280)
..|.+..+..+.....|+ +.+|..+ -.++.++|+.|+..|++++.+...|+||||-||.+.+.+|+.+||.+|+
T Consensus 80 ~~lL~e~an~vNtrD~D~YTpLHRAa-----Yn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhga 154 (228)
T KOG0512|consen 80 QRLLSEKANHVNTRDEDEYTPLHRAA-----YNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGA 154 (228)
T ss_pred HHHHHhccccccccccccccHHHHHH-----hcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccC
Confidence 344444444443333333 4566666 6688899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHcC
Q 023608 254 DKDEEDSEGRTALHFACGYG 273 (280)
Q Consensus 254 dvn~~D~~G~TPLH~Aa~~G 273 (280)
|||+....-+||||.||...
T Consensus 155 DVnA~t~g~ltpLhlaa~~r 174 (228)
T KOG0512|consen 155 DVNAQTKGLLTPLHLAAGNR 174 (228)
T ss_pred cccccccccchhhHHhhccc
Confidence 99999999999999999654
No 23
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.25 E-value=6.4e-12 Score=120.94 Aligned_cols=72 Identities=19% Similarity=0.152 Sum_probs=68.9
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
-.|+.++|++|+++|+|++..|..|+|.||+||++|+++|+++|++.|+|+|.++..|+|+||.++..||+|
T Consensus 126 fDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vd 197 (615)
T KOG0508|consen 126 FDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVD 197 (615)
T ss_pred hcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHH
Confidence 557889999999999999999999999999999999999999999999999999999999999999999986
No 24
>PHA02798 ankyrin-like protein; Provisional
Probab=99.25 E-value=3.1e-11 Score=118.80 Aligned_cols=106 Identities=14% Similarity=-0.012 Sum_probs=83.2
Q ss_pred ChHHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcC---CHHHH
Q 023608 169 SLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVG---DAEGL 245 (280)
Q Consensus 169 ~~~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G---~~eiv 245 (280)
.-.++++.+.+.|...-.+.....+.++.+...+....+..++++.|++.|+|+|.+|..|+||||+|+..+ +.+++
T Consensus 49 ~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv 128 (489)
T PHA02798 49 PSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEIL 128 (489)
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHH
Confidence 344566777777776555555555666654432221223468999999999999999999999999999875 78999
Q ss_pred HHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608 246 KNALAAGADKDEEDSEGRTALHFACGYGE 274 (280)
Q Consensus 246 k~LL~~GAdvn~~D~~G~TPLH~Aa~~G~ 274 (280)
++|+++|++++.+|..|+||||+|+..++
T Consensus 129 ~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~ 157 (489)
T PHA02798 129 LFMIENGADTTLLDKDGFTMLQVYLQSNH 157 (489)
T ss_pred HHHHHcCCCccccCCCCCcHHHHHHHcCC
Confidence 99999999999999999999999999886
No 25
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.24 E-value=6.1e-11 Score=104.62 Aligned_cols=98 Identities=12% Similarity=-0.010 Sum_probs=65.4
Q ss_pred HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHH-HHhcCCHHHHHHHHH
Q 023608 172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHH-TASVGDAEGLKNALA 250 (280)
Q Consensus 172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~-Aa~~G~~eivk~LL~ 250 (280)
++++.+.+.|...-.+.....+.+|..... ..+..+++++|++.|++++.+|..|.||||. ++..++.+++++|++
T Consensus 104 eiv~~Ll~~gadin~~d~~G~TpLh~a~~~---~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~ 180 (209)
T PHA02859 104 EILKILIDSGSSITEEDEDGKNLLHMYMCN---FNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTS 180 (209)
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHh---ccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHH
Confidence 444444555544433333334444443211 2345678888888888888888888888884 456778888888888
Q ss_pred cCCCCCCCCCCCCcHHHHHHHc
Q 023608 251 AGADKDEEDSEGRTALHFACGY 272 (280)
Q Consensus 251 ~GAdvn~~D~~G~TPLH~Aa~~ 272 (280)
+|++++.+|..|+||||+|...
T Consensus 181 ~Gadi~~~d~~g~tpl~la~~~ 202 (209)
T PHA02859 181 LGIDINETNKSGYNCYDLIKFR 202 (209)
T ss_pred cCCCCCCCCCCCCCHHHHHhhh
Confidence 8888888888888888888754
No 26
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.24 E-value=8.9e-12 Score=114.02 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=67.6
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~ 274 (280)
..|+..+++.|+..|+-||..+.-..||||+|+.+||.++|+.||+..+|||+.+..|+|||||||..|+
T Consensus 43 kegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgy 112 (448)
T KOG0195|consen 43 KEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGY 112 (448)
T ss_pred hcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcH
Confidence 7788899999999999999999999999999999999999999999999999999999999999999875
No 27
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.23 E-value=2.9e-11 Score=112.79 Aligned_cols=72 Identities=14% Similarity=0.009 Sum_probs=65.8
Q ss_pred ccCCHHHHHHHHhCCCCccccC----CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVG----NEDESIVHHTASVGDAEGLKNALAAGADKDEE-DSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D----~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~-D~~G~TPLH~Aa~~G~~e 276 (280)
..++.++++.|+++|+|+|.++ ..|.||||+|+..++.+++++|+++|+++|.+ +..|+||||+|+.+|+++
T Consensus 42 ~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~e 118 (300)
T PHA02884 42 KFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLK 118 (300)
T ss_pred HcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHH
Confidence 5577899999999999999974 68999999999999999999999999999996 468999999999998865
No 28
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.23 E-value=6.1e-11 Score=104.63 Aligned_cols=103 Identities=12% Similarity=-0.001 Sum_probs=78.2
Q ss_pred HHHHHHHHcCChhhhhhh-cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHh--cCCHHHHHH
Q 023608 171 KPILDEIESGGPSAMMKY-WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTAS--VGDAEGLKN 247 (280)
Q Consensus 171 ~~i~e~i~~~g~~al~~~-~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~--~G~~eivk~ 247 (280)
.++++.+.+.|....... ....+.+|..+.. ...+..++++.|+++|+++|.+|..|+||||+|+. .++.+++++
T Consensus 66 ~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~--~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~ 143 (209)
T PHA02859 66 VEILKFLIENGADVNFKTRDNNLSALHHYLSF--NKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKL 143 (209)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCCHHHHHHHh--CccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHH
Confidence 455666666666554443 2344566654421 11245789999999999999999999999999875 468999999
Q ss_pred HHHcCCCCCCCCCCCCcHHHH-HHHcCCC
Q 023608 248 ALAAGADKDEEDSEGRTALHF-ACGYGEV 275 (280)
Q Consensus 248 LL~~GAdvn~~D~~G~TPLH~-Aa~~G~~ 275 (280)
|+++|++++.+|..|+||||. |+..++.
T Consensus 144 Li~~gadin~~d~~g~t~Lh~~a~~~~~~ 172 (209)
T PHA02859 144 LIDSGVSFLNKDFDNNNILYSYILFHSDK 172 (209)
T ss_pred HHHcCCCcccccCCCCcHHHHHHHhcCCH
Confidence 999999999999999999995 4555553
No 29
>PHA03095 ankyrin-like protein; Provisional
Probab=99.22 E-value=5.4e-11 Score=115.36 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=41.2
Q ss_pred CHHHHHHHHhCCCCccccCCCCCcHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608 208 GDATTSADNAGADEAEEVGNEDESIVHHTASVG-DAEGLKNALAAGADKDEEDSEGRTALHFAC 270 (280)
Q Consensus 208 ~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G-~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa 270 (280)
..++++.|++.|+++|.+|..|+||||+|+..| +.+++++|+++|++++.+|..|+||||+|+
T Consensus 62 ~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~ 125 (471)
T PHA03095 62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL 125 (471)
T ss_pred hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 556666666666666666666666666666666 366666666666666666666666666666
No 30
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.22 E-value=4e-11 Score=112.45 Aligned_cols=124 Identities=18% Similarity=0.132 Sum_probs=100.3
Q ss_pred hhcCcChHHHHHHHHHHhhcCCChHHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccC
Q 023608 147 SLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVG 226 (280)
Q Consensus 147 ~l~n~~~~~~~~~~l~~lk~dp~~~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D 226 (280)
..++-++..-|...|++||.+.....+.+.+.-++-.+..... ..+++.+.++.|..++|+.||+.|+|||+.|
T Consensus 297 ~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~------gQTALMLAVSHGr~d~vk~LLacgAdVNiQD 370 (452)
T KOG0514|consen 297 QQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQH------GQTALMLAVSHGRVDMVKALLACGADVNIQD 370 (452)
T ss_pred ccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhh------cchhhhhhhhcCcHHHHHHHHHccCCCcccc
Confidence 3445566777888999999887766665555544433222111 3355667789999999999999999999999
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 227 NEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 227 ~~g~TpLh~Aa~~G~~eivk~LL~~-GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
.+|.|+|.+||.+||++||++||.. ++|+...|.+|.|+|.+|-..||-|
T Consensus 371 dDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~e 421 (452)
T KOG0514|consen 371 DDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHRE 421 (452)
T ss_pred CCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchH
Confidence 9999999999999999999999985 6999999999999999999999865
No 31
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.21 E-value=3e-11 Score=127.60 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=75.7
Q ss_pred hHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCC
Q 023608 198 LGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVCS 277 (280)
Q Consensus 198 ~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e~ 277 (280)
+....++..|+..+|++|+++|+|++.+|+.|+||||.||..|+.+|+.+|+++|+++|+.|.+|.||||+|+.+|+++.
T Consensus 542 TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~ 621 (1143)
T KOG4177|consen 542 TPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSV 621 (1143)
T ss_pred chHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccch
Confidence 44445558899999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q 023608 278 NP 279 (280)
Q Consensus 278 ~~ 279 (280)
..
T Consensus 622 ~k 623 (1143)
T KOG4177|consen 622 VK 623 (1143)
T ss_pred hh
Confidence 53
No 32
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.21 E-value=5.6e-11 Score=115.64 Aligned_cols=72 Identities=15% Similarity=-0.020 Sum_probs=68.0
Q ss_pred ccCC--HHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGG--DATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~--~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..+. .++++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+
T Consensus 224 ~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~ 297 (480)
T PHA03100 224 CYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE 297 (480)
T ss_pred HhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHH
Confidence 5566 89999999999999999999999999999999999999999999999999999999999999888754
No 33
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.21 E-value=3.5e-11 Score=125.73 Aligned_cols=72 Identities=18% Similarity=0.107 Sum_probs=69.3
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..|+.++++.|++.|+|+|.+|..|+||||+||.+|+.++|++|+++|+++|.+|.+|+||||+|+..||.+
T Consensus 534 ~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~ 605 (823)
T PLN03192 534 STGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK 605 (823)
T ss_pred HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence 668889999999999999999999999999999999999999999999999999999999999999999865
No 34
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.20 E-value=3.9e-11 Score=122.82 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=69.8
Q ss_pred hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
+..|+.+.++.|++.|+++|.+|..|+||||+||.+|+.++|++|+++|++++.+|..|+||||+|+.+|+.+
T Consensus 90 a~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~ 162 (664)
T PTZ00322 90 AASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE 162 (664)
T ss_pred HHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence 3678899999999999999999999999999999999999999999999999999999999999999998864
No 35
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.20 E-value=9.9e-11 Score=112.16 Aligned_cols=100 Identities=15% Similarity=0.033 Sum_probs=82.3
Q ss_pred HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608 172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA 251 (280)
Q Consensus 172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~ 251 (280)
++++.+.+.|...........+.+|.++ ..++.++++.|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus 116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~-----~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ 190 (413)
T PHA02875 116 DIMKLLIARGADPDIPNTDKFSPLHLAV-----MMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190 (413)
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHH-----HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 4455555555554444444556666555 66888999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC-cHHHHHHHcCCCC
Q 023608 252 GADKDEEDSEGR-TALHFACGYGEVC 276 (280)
Q Consensus 252 GAdvn~~D~~G~-TPLH~Aa~~G~~e 276 (280)
|++++..+..|. ||||+|+..|+.+
T Consensus 191 ga~~n~~~~~~~~t~l~~A~~~~~~~ 216 (413)
T PHA02875 191 GANIDYFGKNGCVAALCYAIENNKID 216 (413)
T ss_pred CCCCCcCCCCCCchHHHHHHHcCCHH
Confidence 999999998874 8999999998865
No 36
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.18 E-value=8.8e-11 Score=115.75 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=61.6
Q ss_pred CHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 208 GDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 208 ~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..+++++|+. ++++|.+|..|+||||+|+..|+.++|++|++.|++++.+|..|+||||+|+..|+.+
T Consensus 236 ~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~ 303 (494)
T PHA02989 236 EFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNID 303 (494)
T ss_pred chHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence 3456666655 5999999999999999999999999999999999999999999999999999998864
No 37
>PHA02917 ankyrin-like protein; Provisional
Probab=99.18 E-value=1.1e-10 Score=119.41 Aligned_cols=103 Identities=12% Similarity=0.004 Sum_probs=80.4
Q ss_pred HHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCC---CC-----------CcHHHHH
Q 023608 171 KPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGN---ED-----------ESIVHHT 236 (280)
Q Consensus 171 ~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~---~g-----------~TpLh~A 236 (280)
.++++.+.+.|...-.+.....+.++.... ...+..+++++|+++|++++.+|. .| .||||+|
T Consensus 116 ~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a---~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a 192 (661)
T PHA02917 116 VDLIKVLVEHGFDLSVKCENHRSVIENYVM---TDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLY 192 (661)
T ss_pred HHHHHHHHHcCCCCCccCCCCccHHHHHHH---ccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHH
Confidence 345556666666655555555666664331 245788999999999999986653 34 5999999
Q ss_pred Hh-----------cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 237 AS-----------VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 237 a~-----------~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
+. +++.++|++|+++|++||.+|.+|+||||+|+..||++
T Consensus 193 ~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~ 243 (661)
T PHA02917 193 IISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHID 243 (661)
T ss_pred HhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCc
Confidence 86 56899999999999999999999999999999999864
No 38
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.18 E-value=7.6e-11 Score=116.79 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=66.0
Q ss_pred hccCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608 204 LAVGGDATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275 (280)
Q Consensus 204 ~~~g~~~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~ 275 (280)
+..+..+++++|+++|+|||..+ .-+.|||||||++|++.+|.+|+++|||++.+|.+|.||||+|+.+||+
T Consensus 86 AiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~ 158 (600)
T KOG0509|consen 86 AINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHT 158 (600)
T ss_pred HHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCch
Confidence 36778899999999999999988 7789999999999999999999999999999999999999999999885
No 39
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.15 E-value=3.8e-10 Score=116.46 Aligned_cols=97 Identities=12% Similarity=0.004 Sum_probs=75.0
Q ss_pred HHHHHHHcCC-hhhhhh-hcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCC--HHHHHH
Q 023608 172 PILDEIESGG-PSAMMK-YWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGD--AEGLKN 247 (280)
Q Consensus 172 ~i~e~i~~~g-~~al~~-~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~--~eivk~ 247 (280)
++++.+.+.| ...-.+ .....+.+|... +...++.+++++|++.|+++|.+|..|+||||+|+..|+ .++|++
T Consensus 156 eiVk~LLe~G~ADIN~~~d~~G~TpLH~A~---~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVkl 232 (764)
T PHA02716 156 DLIKYMVDVGIVNLNYVCKKTGYGILHAYL---GNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKK 232 (764)
T ss_pred HHHHHHHHCCCCCcccccCCCCCcHHHHHH---HhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence 4455555555 443322 233445566422 334456789999999999999999999999999999995 599999
Q ss_pred HHHcCCCCCCCCCCCCcHHHHHHH
Q 023608 248 ALAAGADKDEEDSEGRTALHFACG 271 (280)
Q Consensus 248 LL~~GAdvn~~D~~G~TPLH~Aa~ 271 (280)
||++||++|.+|..|+||||+|+.
T Consensus 233 LLe~GADVN~kD~~G~TPLh~Ai~ 256 (764)
T PHA02716 233 IIELGGDMDMKCVNGMSPIMTYII 256 (764)
T ss_pred HHHcCCCCCCCCCCCCCHHHHHHH
Confidence 999999999999999999998853
No 40
>PHA02946 ankyin-like protein; Provisional
Probab=99.15 E-value=1.8e-10 Score=112.72 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=67.5
Q ss_pred HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcC--CHHHHHHHH
Q 023608 172 PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVG--DAEGLKNAL 249 (280)
Q Consensus 172 ~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G--~~eivk~LL 249 (280)
.+++.+.+.|...-.+.....+.+|..+ ..++.++|+.|+++|+++|.+|..|+||||+|+..+ ..+++++|+
T Consensus 53 ~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa-----~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl 127 (446)
T PHA02946 53 RFVEELLHRGYSPNETDDDGNYPLHIAS-----KINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV 127 (446)
T ss_pred HHHHHHHHCcCCCCccCCCCCCHHHHHH-----HcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH
Confidence 4455666666655444445556666555 567778888888888888888888888888887655 367788888
Q ss_pred HcCCCCCC-CCCCCCcHHHHHHHcCC
Q 023608 250 AAGADKDE-EDSEGRTALHFACGYGE 274 (280)
Q Consensus 250 ~~GAdvn~-~D~~G~TPLH~Aa~~G~ 274 (280)
++|++++. .|..|+|||| ||..|+
T Consensus 128 ~~Gadin~~~d~~g~tpL~-aa~~~~ 152 (446)
T PHA02946 128 QYGAKINNSVDEEGCGPLL-ACTDPS 152 (446)
T ss_pred HcCCCcccccCCCCCcHHH-HHHCCC
Confidence 88888774 5777777776 444444
No 41
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=5.7e-11 Score=115.59 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=66.3
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~ 275 (280)
..|-.++|+..+..-.|+-..+.+|.|+||-|.+.||.+||+|||+.|++||+.|.+||||||.|+.++.+
T Consensus 559 LeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv 629 (752)
T KOG0515|consen 559 LEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV 629 (752)
T ss_pred hcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence 55777899999999899999999999999999999999999999999999999999999999999988765
No 42
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.14 E-value=1.3e-10 Score=99.77 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=61.4
Q ss_pred ccCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNA-GADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~-~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..+....|+.|++ ...-||.+|.+|.||||.|+++|+++||+.|+..||+++++...||||||-||.+...+
T Consensus 72 e~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~ 144 (228)
T KOG0512|consen 72 EKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE 144 (228)
T ss_pred hhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence 3444455666665 55569999999999999999999999999999999999999999999999999776543
No 43
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.14 E-value=2.9e-10 Score=110.08 Aligned_cols=96 Identities=18% Similarity=0.011 Sum_probs=72.2
Q ss_pred HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC
Q 023608 173 ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAG 252 (280)
Q Consensus 173 i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G 252 (280)
+++.+.+.|...-.+.....+.+|..+ ..+..+++++|++.|++++..|..|+||||+|+..|+.++|++|++.|
T Consensus 139 ~v~~Ll~~gad~n~~d~~g~tpLh~A~-----~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g 213 (434)
T PHA02874 139 SIKMLFEYGADVNIEDDNGCYPIHIAI-----KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHG 213 (434)
T ss_pred HHHHHHhCCCCCCCcCCCCCCHHHHHH-----HCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 344444444443333334445565544 567788999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHcC
Q 023608 253 ADKDEEDSEGRTALHFACGYG 273 (280)
Q Consensus 253 Advn~~D~~G~TPLH~Aa~~G 273 (280)
++++.++..|+||||+|+.++
T Consensus 214 ~~i~~~~~~g~TpL~~A~~~~ 234 (434)
T PHA02874 214 NHIMNKCKNGFTPLHNAIIHN 234 (434)
T ss_pred CCCcCCCCCCCCHHHHHHHCC
Confidence 888888778888888777654
No 44
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.13 E-value=7.4e-11 Score=124.72 Aligned_cols=72 Identities=19% Similarity=0.144 Sum_probs=67.2
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..+...+++.++++|++++.++.++.||||+||.+|++++|++||++|++++.+|+.|+||||.||.+||.+
T Consensus 516 ~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~ 587 (1143)
T KOG4177|consen 516 DEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHND 587 (1143)
T ss_pred hhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHH
Confidence 445557889999999999999999999999999999999999999999999999999999999999999754
No 45
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.11 E-value=2.9e-10 Score=110.68 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=60.8
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVG--DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G--~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..++.++++.|++.|++++..+..|.||||+|+..| +.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~ 190 (480)
T PHA03100 117 KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID 190 (480)
T ss_pred ccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH
Confidence 456778888888888888888888888888888888 888888888888888888888888888888887654
No 46
>PHA02798 ankyrin-like protein; Provisional
Probab=99.09 E-value=3.9e-10 Score=111.06 Aligned_cols=69 Identities=13% Similarity=-0.036 Sum_probs=61.9
Q ss_pred CCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 207 GGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 207 g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
....++.+|++ ++|+|.+|..|+||||+|+.+|+.+++++||++|+|++.+|..|+||||+|+..++.+
T Consensus 237 ~~~~i~~~l~~-~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~ 305 (489)
T PHA02798 237 FKKNILDFIFS-YIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKF 305 (489)
T ss_pred chHHHHHHHHh-cCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHH
Confidence 34566777666 5899999999999999999999999999999999999999999999999999888653
No 47
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.08 E-value=5.1e-10 Score=109.71 Aligned_cols=62 Identities=18% Similarity=0.055 Sum_probs=32.5
Q ss_pred CHHHHHHHHhCCCCccccCC-CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608 208 GDATTSADNAGADEAEEVGN-EDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG 271 (280)
Q Consensus 208 ~~~~v~~Ll~~gadvn~~D~-~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~ 271 (280)
+.++++.|++.|+++|.++. .|.||||+| .++.+++++|+++|+++|.+|..|+||||+|+.
T Consensus 247 ~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~ 309 (477)
T PHA02878 247 DYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVK 309 (477)
T ss_pred CHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 34455555555555555443 455555555 234455555555555555555555555555554
No 48
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.07 E-value=7.9e-10 Score=83.50 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=54.7
Q ss_pred hhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Q 023608 192 KDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEED 259 (280)
Q Consensus 192 ~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D 259 (280)
.+.++.++ ..++.+++++|++.|++++.+|..|+||||+|+.+|+.+++++|+++|++++.+|
T Consensus 27 ~~~l~~A~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 27 NTALHYAA-----ENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp SBHHHHHH-----HTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred CCHHHHHH-----HcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 34666555 6788999999999999999999999999999999999999999999999999876
No 49
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.06 E-value=7.2e-10 Score=114.42 Aligned_cols=65 Identities=15% Similarity=0.022 Sum_probs=37.2
Q ss_pred CCHHHHHHHHhCCCCccccCCCCCcHHHHHHh--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608 207 GGDATTSADNAGADEAEEVGNEDESIVHHTAS--VGDAEGLKNALAAGADKDEEDSEGRTALHFACG 271 (280)
Q Consensus 207 g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~--~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~ 271 (280)
++.++++.|++.|++++.+|..|+||||+|+. .++.+++++|+++|++++.+|..|+||||+|+.
T Consensus 295 g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~ 361 (764)
T PHA02716 295 IDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLS 361 (764)
T ss_pred CCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence 44455555666666666666666666665442 345556666666666666666666666665543
No 50
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.06 E-value=6.7e-10 Score=113.53 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=68.7
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..++.+++++|++.|+++|.+|..|+||||+||..|+.++|++|+++|++++..+.+|.||||+|+..|+.+
T Consensus 154 ~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ 225 (682)
T PHA02876 154 QQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNID 225 (682)
T ss_pred HCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHH
Confidence 567889999999999999999999999999999999999999999999999999999999999999988864
No 51
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.06 E-value=8.6e-11 Score=113.30 Aligned_cols=79 Identities=19% Similarity=0.152 Sum_probs=73.0
Q ss_pred hHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 198 LGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 198 ~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
...+.....|+.++|+.|+..|++||.......|||.-||.-|+.++|++|+++|+|++..|+.|+|.||.||.+||++
T Consensus 86 ppLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~ 164 (615)
T KOG0508|consen 86 PPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVD 164 (615)
T ss_pred chhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchH
Confidence 3344445678999999999999999999999999999999999999999999999999999999999999999999986
No 52
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.03 E-value=8.6e-10 Score=108.73 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCCccccCCCCCcHHHHHHhc---CCHHHHHHHHHcCCCC-CCCCCCCCcHHHHHH
Q 023608 210 ATTSADNAGADEAEEVGNEDESIVHHTASV---GDAEGLKNALAAGADK-DEEDSEGRTALHFAC 270 (280)
Q Consensus 210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~---G~~eivk~LL~~GAdv-n~~D~~G~TPLH~Aa 270 (280)
++++.|++.|+|+|.+|..|.||||.|+.. ++.++|++|+++|+++ +.+|..|+||||+|+
T Consensus 89 ~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~ 153 (494)
T PHA02989 89 KIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYL 153 (494)
T ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHH
Confidence 455555555555555555555555544432 3455555555555555 455555555555554
No 53
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.02 E-value=3.6e-10 Score=87.90 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=56.9
Q ss_pred hcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 023608 188 YWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALH 267 (280)
Q Consensus 188 ~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH 267 (280)
.......+|..+ ..|...++++|+..|++|+.+|++|.|||.-|.+.||.+||++||..|++-..+--+|.+.+.
T Consensus 31 ~~ggR~plhyAA-----D~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~e 105 (117)
T KOG4214|consen 31 IYGGRTPLHYAA-----DYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIE 105 (117)
T ss_pred HhCCcccchHhh-----hcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHh
Confidence 345555566666 667778888888888888888888888888888888888888888888887666666766554
No 54
>PHA02876 ankyrin repeat protein; Provisional
Probab=98.98 E-value=2.5e-09 Score=109.30 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=48.9
Q ss_pred HHHHHHHhCCCCccccCCCCCcHHHHHHhcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 023608 210 ATTSADNAGADEAEEVGNEDESIVHHTASVG-DAEGLKNALAAGADKDEEDSEGRTALHFACGYG 273 (280)
Q Consensus 210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G-~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G 273 (280)
.+++.|++.|+++|.+|..|+||||+|+..+ +.+++++|+++|++++.+|..|+||||+|+.++
T Consensus 423 ~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~~ 487 (682)
T PHA02876 423 MSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYH 487 (682)
T ss_pred HHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhC
Confidence 4577777777777778888888888887765 577788888888888888888888888777654
No 55
>PHA02917 ankyrin-like protein; Provisional
Probab=98.97 E-value=2.6e-09 Score=109.45 Aligned_cols=67 Identities=13% Similarity=0.140 Sum_probs=62.7
Q ss_pred CHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH-cCC
Q 023608 208 GDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG-YGE 274 (280)
Q Consensus 208 ~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~-~G~ 274 (280)
..++++.|++.|+|+|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+. .++
T Consensus 431 ~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~ 498 (661)
T PHA02917 431 ILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRN 498 (661)
T ss_pred hHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCC
Confidence 4567899999999999999999999999999999999999999999999999999999999996 444
No 56
>PHA02792 ankyrin-like protein; Provisional
Probab=98.94 E-value=3.3e-09 Score=107.15 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=58.4
Q ss_pred HHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608 210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG 271 (280)
Q Consensus 210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~ 271 (280)
.+++.|++.|+|+|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+.
T Consensus 391 ~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 391 SILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI 452 (631)
T ss_pred HHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999975
No 57
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.91 E-value=4.1e-09 Score=89.33 Aligned_cols=66 Identities=26% Similarity=0.228 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCC---CccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608 209 DATTSADNAGAD---EAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274 (280)
Q Consensus 209 ~~~v~~Ll~~ga---dvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~ 274 (280)
.++++.|++.|+ +.+.+|..|+||||+|+..|+.+++++|++.|++++.++..|.|+||+|+..++
T Consensus 124 ~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~ 192 (235)
T COG0666 124 IEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR 192 (235)
T ss_pred HHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccch
Confidence 455555555555 333335555555555555555555555555555555555555555555555444
No 58
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=98.88 E-value=7.3e-09 Score=87.78 Aligned_cols=72 Identities=26% Similarity=0.321 Sum_probs=65.4
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCC-----HHHHHHHHHcCC---CCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGD-----AEGLKNALAAGA---DKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~-----~eivk~LL~~GA---dvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..+....+..++..|++++.+|..|.||||+|+..++ .+++++||+.|+ ..+.+|..|+||||+|+..|+.+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~ 161 (235)
T COG0666 82 SKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDAD 161 (235)
T ss_pred HcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchH
Confidence 4456677899999999999999999999999999999 999999999999 56667999999999999999864
No 59
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.87 E-value=8.4e-10 Score=97.82 Aligned_cols=73 Identities=14% Similarity=0.105 Sum_probs=56.2
Q ss_pred hhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608 202 MGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274 (280)
Q Consensus 202 ~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~ 274 (280)
+....|..++|++|+.++.|||+.|-+|-|||.||++-+|++||+.||..|++++..|..|++++..|+..|+
T Consensus 199 LAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGy 271 (296)
T KOG0502|consen 199 LATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGY 271 (296)
T ss_pred HHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhh
Confidence 3345566677888888888888888888888888888888888888888888888888888888887776654
No 60
>PHA02730 ankyrin-like protein; Provisional
Probab=98.87 E-value=8.9e-09 Score=104.88 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=59.3
Q ss_pred HHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHc
Q 023608 210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS-EGRTALHFACGY 272 (280)
Q Consensus 210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~-~G~TPLH~Aa~~ 272 (280)
+++++|++.|+|+|.+|..|+||||+|+..++.+++++|+++|+++|.+|. .|+||||+|+..
T Consensus 443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~ 506 (672)
T PHA02730 443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYR 506 (672)
T ss_pred HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHh
Confidence 468999999999999999999999999999999999999999999999997 599999999863
No 61
>PHA02736 Viral ankyrin protein; Provisional
Probab=98.86 E-value=1.4e-09 Score=90.74 Aligned_cols=55 Identities=27% Similarity=0.257 Sum_probs=48.5
Q ss_pred ccccCCCCCcHHHHHHhcCCH---HHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCCC
Q 023608 222 AEEVGNEDESIVHHTASVGDA---EGLKNALAAGADKDEEDS-EGRTALHFACGYGEVC 276 (280)
Q Consensus 222 vn~~D~~g~TpLh~Aa~~G~~---eivk~LL~~GAdvn~~D~-~G~TPLH~Aa~~G~~e 276 (280)
++.+|.+|+||||+||..|+. +++++|++.|++++.+|. .|+||||+|+.+|+.+
T Consensus 48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~ 106 (154)
T PHA02736 48 VLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYE 106 (154)
T ss_pred HHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHH
Confidence 345689999999999999987 468899999999999984 9999999999988764
No 62
>PHA02730 ankyrin-like protein; Provisional
Probab=98.86 E-value=1.3e-08 Score=103.72 Aligned_cols=106 Identities=13% Similarity=0.017 Sum_probs=77.6
Q ss_pred ChHHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCC--CccccCCCCCcHHHH---HHhcC---
Q 023608 169 SLKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGAD--EAEEVGNEDESIVHH---TASVG--- 240 (280)
Q Consensus 169 ~~~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~ga--dvn~~D~~g~TpLh~---Aa~~G--- 240 (280)
--.++++.+.+.|...-.+ ....+.+|..+..-. ..-+.+++++|+++|+ +++.+|..|+||||. +...+
T Consensus 357 v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nn-n~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~ 434 (672)
T PHA02730 357 VSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNN-NIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGY 434 (672)
T ss_pred CcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcC-CcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccc
Confidence 3456677777777765554 455566766552200 0012699999999997 699999999999984 33232
Q ss_pred ------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 241 ------DAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 241 ------~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..+++++|+.+|+++|.+|..|+||||+|+..++.+
T Consensus 435 ~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~e 476 (672)
T PHA02730 435 HCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQ 476 (672)
T ss_pred cccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHH
Confidence 235799999999999999999999999999887653
No 63
>PHA02795 ankyrin-like protein; Provisional
Probab=98.85 E-value=9.8e-09 Score=100.07 Aligned_cols=72 Identities=15% Similarity=-0.109 Sum_probs=61.4
Q ss_pred ccCCHHHHHHHHhCCCCccccC------CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVG------NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D------~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..++.+++++|+++|++.+... ..+.|++|.|+..++.+++++|+++|+++|.+|..|+||||+|+..|+.+
T Consensus 158 ~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~e 235 (437)
T PHA02795 158 CKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYID 235 (437)
T ss_pred HcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHH
Confidence 5577889999999997543322 34778899999999999999999999999999999999999999999865
No 64
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=98.84 E-value=1.4e-08 Score=79.09 Aligned_cols=72 Identities=19% Similarity=0.147 Sum_probs=63.3
Q ss_pred hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
+..|..+.|+-....|.+||..= .|++|||||+-+|.+++++||+..|++|+.+|+.|-|||.-|++.||.+
T Consensus 10 vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~ 81 (117)
T KOG4214|consen 10 VKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD 81 (117)
T ss_pred hccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence 34566666777777778888764 8999999999999999999999999999999999999999999999864
No 65
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.84 E-value=6.5e-09 Score=105.70 Aligned_cols=97 Identities=26% Similarity=0.230 Sum_probs=69.8
Q ss_pred HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHh--CCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608 174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNA--GADEAEEVGNEDESIVHHTASVGDAEGLKNALAA 251 (280)
Q Consensus 174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~--~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~ 251 (280)
++-+...|.+.-.+-.+.+..+|.++ ..|....|+.|+. .-...|+.|..|.||||+|+..||.++++.||..
T Consensus 289 vd~Ll~~Ga~I~~kn~d~~spLH~AA-----~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~ 363 (929)
T KOG0510|consen 289 VDNLLGFGASINSKNKDEESPLHFAA-----IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK 363 (929)
T ss_pred HHHHHHcCCcccccCCCCCCchHHHH-----HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc
Confidence 33344444444444455556666666 6677788888877 3334688888888888888888888888888888
Q ss_pred CCCCC---CCCCCCCcHHHHHHHcCCC
Q 023608 252 GADKD---EEDSEGRTALHFACGYGEV 275 (280)
Q Consensus 252 GAdvn---~~D~~G~TPLH~Aa~~G~~ 275 (280)
|+.+. ..|.+|.|+||+|+.+|+.
T Consensus 364 GA~~~~~~e~D~dg~TaLH~Aa~~g~~ 390 (929)
T KOG0510|consen 364 GALFLNMSEADSDGNTALHLAAKYGNT 390 (929)
T ss_pred ChhhhcccccccCCchhhhHHHHhccH
Confidence 88876 5688888888888888874
No 66
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=98.82 E-value=7.9e-09 Score=91.74 Aligned_cols=80 Identities=18% Similarity=0.079 Sum_probs=73.2
Q ss_pred HhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 197 KLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 197 ~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
.+...+....|+..+|++|+..|+|++...++..++|.+||..|..+||++||.++.|||.-|.+|-|||.||+..+|++
T Consensus 161 fTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvk 240 (296)
T KOG0502|consen 161 FTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVK 240 (296)
T ss_pred chHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHH
Confidence 33444455778899999999999999999999999999999999999999999999999999999999999999999874
No 67
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=98.81 E-value=7.4e-09 Score=95.10 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=77.5
Q ss_pred HHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 023608 171 KPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA 250 (280)
Q Consensus 171 ~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~ 250 (280)
..+.+.+.+.|...-...-.|...+|..+ ..|+-++|..|++..+|||..+..|.|||||||.+|...+.+-|+.
T Consensus 47 ~aivemll~rgarvn~tnmgddtplhlaa-----ahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~ 121 (448)
T KOG0195|consen 47 VAIVEMLLSRGARVNSTNMGDDTPLHLAA-----AHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLIS 121 (448)
T ss_pred HHHHHHHHhcccccccccCCCCcchhhhh-----hcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHh
Confidence 44556666666544333344555565555 6788899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCcHHHHH
Q 023608 251 AGADKDEEDSEGRTALHFA 269 (280)
Q Consensus 251 ~GAdvn~~D~~G~TPLH~A 269 (280)
.|+.|+.-++.|.|||..|
T Consensus 122 ~ga~v~icnk~g~tpldka 140 (448)
T KOG0195|consen 122 CGAAVNICNKKGMTPLDKA 140 (448)
T ss_pred ccceeeecccCCCCchhhh
Confidence 9999999999999999865
No 68
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=98.80 E-value=1.2e-08 Score=70.73 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=37.3
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNAL 249 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL 249 (280)
..|+.+++++|++.|.|++.+|.+|+||||+||..|+.+++++||
T Consensus 10 ~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 10 RSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp HTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 678889999999999999999999999999999999999999996
No 69
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=98.79 E-value=6.5e-08 Score=74.79 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=74.6
Q ss_pred HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Q 023608 174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGA 253 (280)
Q Consensus 174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GA 253 (280)
++.+...+.............++.+. ..+..++++.|+..+.+++..+..+.||+|+|+..++.+++++|+..+.
T Consensus 23 i~~li~~~~~~~~~~~~g~~~l~~a~-----~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~ 97 (126)
T cd00204 23 VKLLLENGADVNAKDNDGRTPLHLAA-----KNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGA 97 (126)
T ss_pred HHHHHHcCCCCCccCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 33444433332233334445555554 4566789999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHcCCC
Q 023608 254 DKDEEDSEGRTALHFACGYGEV 275 (280)
Q Consensus 254 dvn~~D~~G~TPLH~Aa~~G~~ 275 (280)
+++..|..+.||||+|...++.
T Consensus 98 ~~~~~~~~~~~~l~~~~~~~~~ 119 (126)
T cd00204 98 DVNARDKDGRTPLHLAAKNGHL 119 (126)
T ss_pred CCcccCCCCCCHHHHHHhcCCH
Confidence 9999999999999999887654
No 70
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=98.79 E-value=3.5e-08 Score=76.30 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=67.1
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..+..+.++.|+..+.+++..+..|.||||+|+..++.+++++|+..+++++..+..+.||+|+|+.+++.+
T Consensus 16 ~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~ 87 (126)
T cd00204 16 SNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLD 87 (126)
T ss_pred HcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHH
Confidence 567778999999999999999999999999999999999999999999999999999999999999988643
No 71
>PHA02792 ankyrin-like protein; Provisional
Probab=98.78 E-value=2e-08 Score=101.56 Aligned_cols=72 Identities=15% Similarity=0.034 Sum_probs=63.3
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCC--CcHHHHHHhcCCH---HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNED--ESIVHHTASVGDA---EGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g--~TpLh~Aa~~G~~---eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..++.++|+.|++.|++++.+|..| .||||+|+..... +++++|+++|+++|.+|..|+||||+|+..++.+
T Consensus 348 ~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~e 424 (631)
T PHA02792 348 DNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVS 424 (631)
T ss_pred HcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHH
Confidence 6788899999999999999999875 6999998876654 4688999999999999999999999999887753
No 72
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.78 E-value=1.9e-08 Score=102.41 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=69.8
Q ss_pred hHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH-cC-CCCCCCCCCCCcHHHHHH
Q 023608 193 DVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA-AG-ADKDEEDSEGRTALHFAC 270 (280)
Q Consensus 193 ~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~-~G-Advn~~D~~G~TPLH~Aa 270 (280)
+.+|..+ ..|+.+.++.|+..|++++.+++++.||||+||++|+..+|+.||+ .| ..+|..|-.|.||||.|+
T Consensus 275 tpLH~a~-----r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa 349 (929)
T KOG0510|consen 275 TPLHYAA-----RQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA 349 (929)
T ss_pred chHHHHH-----HcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh
Confidence 3455555 7788999999999999999999999999999999999999999999 56 567999999999999999
Q ss_pred HcCCC
Q 023608 271 GYGEV 275 (280)
Q Consensus 271 ~~G~~ 275 (280)
..||-
T Consensus 350 ~~gH~ 354 (929)
T KOG0510|consen 350 KSGHD 354 (929)
T ss_pred hcCHH
Confidence 98884
No 73
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.77 E-value=8.7e-09 Score=100.63 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=64.9
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..++.+-|+.|+..|++++..+.+|.|+||-+|.-.+.+||+||+++|++||..|.+||||||.|+.+||+.
T Consensus 49 ~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~ 120 (527)
T KOG0505|consen 49 SRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLN 120 (527)
T ss_pred ccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHH
Confidence 456777888999999999999999999999999999999999999999999999999999999999988863
No 74
>PF13606 Ank_3: Ankyrin repeat
Probab=98.75 E-value=1.1e-08 Score=63.28 Aligned_cols=30 Identities=33% Similarity=0.408 Sum_probs=28.4
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Q 023608 228 EDESIVHHTASVGDAEGLKNALAAGADKDE 257 (280)
Q Consensus 228 ~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~ 257 (280)
+|+||||+||+.|+.++|++||++|+|||+
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence 489999999999999999999999999984
No 75
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.72 E-value=2e-08 Score=62.97 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=31.1
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 023608 228 EDESIVHHTASVGDAEGLKNALAAGADKDEEDS 260 (280)
Q Consensus 228 ~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~ 260 (280)
+|+||||+||.+|+.+++++||++|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence 589999999999999999999999999999874
No 76
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.71 E-value=2.8e-08 Score=93.56 Aligned_cols=124 Identities=23% Similarity=0.298 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHhhc-CCC-hHHHHHHHHcCChhhhhhh--cCchhHHHHhHHh--------------------hh-h-c
Q 023608 152 TKKDQIEERMAKIKE-DPS-LKPILDEIESGGPSAMMKY--WNDKDVLQKLGEA--------------------MG-L-A 205 (280)
Q Consensus 152 ~~~~~~~~~l~~lk~-dp~-~~~i~e~i~~~g~~al~~~--~~d~~~l~~~~~~--------------------~g-~-~ 205 (280)
....+++..+..+.. .|. |..++...+++|..++|.. ..+.+++..+... +. + .
T Consensus 237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~ 316 (452)
T KOG0514|consen 237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQ 316 (452)
T ss_pred CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcc
Confidence 455566666666554 333 3344566677787777743 2233444333210 00 0 1
Q ss_pred cCCHHHHHHHHhCCCCcccc-CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 206 VGGDATTSADNAGADEAEEV-GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 206 ~g~~~~v~~Ll~~gadvn~~-D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..+.++|+.|..-|. ||.+ ...|+|+|.+|..+|++++|+.||..|||||.+|.+|.|+|..||.+||.|
T Consensus 317 ~~d~~vV~~LF~mgn-VNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkE 387 (452)
T KOG0514|consen 317 PADRTVVERLFKMGD-VNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKE 387 (452)
T ss_pred hhhHHHHHHHHhccC-cchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHH
Confidence 123356777777765 7765 467999999999999999999999999999999999999999999999986
No 77
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.71 E-value=2.1e-08 Score=103.69 Aligned_cols=78 Identities=17% Similarity=0.032 Sum_probs=68.6
Q ss_pred chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccC--------------CCCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 023608 191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVG--------------NEDESIVHHTASVGDAEGLKNALAAGADKD 256 (280)
Q Consensus 191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D--------------~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn 256 (280)
+.+.+|.++ ..++.++|+.|++.|++++.++ ..|+||||+|+..|+.+++++|+++|+|++
T Consensus 128 G~TpLhlAa-----~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin 202 (743)
T TIGR00870 128 GITALHLAA-----HRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL 202 (743)
T ss_pred CCcHHHHHH-----HhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh
Confidence 445555555 6688899999999999999753 368999999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHcC
Q 023608 257 EEDSEGRTALHFACGYG 273 (280)
Q Consensus 257 ~~D~~G~TPLH~Aa~~G 273 (280)
.+|..|+||||+|+..+
T Consensus 203 ~~d~~g~T~Lh~A~~~~ 219 (743)
T TIGR00870 203 TADSLGNTLLHLLVMEN 219 (743)
T ss_pred hHhhhhhHHHHHHHhhh
Confidence 99999999999999875
No 78
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.61 E-value=5.8e-08 Score=94.98 Aligned_cols=63 Identities=24% Similarity=0.219 Sum_probs=58.0
Q ss_pred HHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 214 ~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..+..|.+.++.+..|.|.||.|+.+|..++.++||.+|.+++.+|.+||||||.|+.+|+.+
T Consensus 183 q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~ 245 (527)
T KOG0505|consen 183 QWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQED 245 (527)
T ss_pred HHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHh
Confidence 335588999999988999999999999999999999999999999999999999999998865
No 79
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=98.56 E-value=3.3e-08 Score=100.03 Aligned_cols=82 Identities=17% Similarity=0.067 Sum_probs=58.5
Q ss_pred CchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 023608 190 NDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFA 269 (280)
Q Consensus 190 ~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~A 269 (280)
++-+.+|+++ ..|+..++++|++..+-++..|..|.+|||+|+|.|+.++|+.|+.++..+|+...+|.||||.|
T Consensus 48 ~gfTalhha~-----Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhla 122 (854)
T KOG0507|consen 48 SGFTLLHHAV-----LNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLA 122 (854)
T ss_pred cchhHHHHHH-----hcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchh
Confidence 4556666666 55666777777777777777777777777777777777777777777766777777777777777
Q ss_pred HHcCCCC
Q 023608 270 CGYGEVC 276 (280)
Q Consensus 270 a~~G~~e 276 (280)
+++||.|
T Consensus 123 aqhgh~d 129 (854)
T KOG0507|consen 123 AQHGHLE 129 (854)
T ss_pred hhhcchH
Confidence 7777765
No 80
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.52 E-value=4e-07 Score=92.87 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=64.9
Q ss_pred hHHHHhHHhhhhccCCHHHHHHHHhCCCCcccc---------C--------------CCCCcHHHHHHhcCCHHHHHHHH
Q 023608 193 DVLQKLGEAMGLAVGGDATTSADNAGADEAEEV---------G--------------NEDESIVHHTASVGDAEGLKNAL 249 (280)
Q Consensus 193 ~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~---------D--------------~~g~TpLh~Aa~~G~~eivk~LL 249 (280)
+.....++.+++...+.+.|++|++.||||+.+ | +.|+.||.+||..+..+|+++|+
T Consensus 181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl 260 (782)
T KOG3676|consen 181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL 260 (782)
T ss_pred hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence 333344444555667779999999999998754 1 24788999999999999999999
Q ss_pred HcCCCCCCCCCCCCcHHHHHHHc
Q 023608 250 AAGADKDEEDSEGRTALHFACGY 272 (280)
Q Consensus 250 ~~GAdvn~~D~~G~TPLH~Aa~~ 272 (280)
++|||++++|..|+|.||..+.+
T Consensus 261 ~~gAd~~aqDS~GNTVLH~lVi~ 283 (782)
T KOG3676|consen 261 AHGADPNAQDSNGNTVLHMLVIH 283 (782)
T ss_pred hcCCCCCccccCCChHHHHHHHH
Confidence 99999999999999999987653
No 81
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.46 E-value=3.1e-07 Score=84.46 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=79.5
Q ss_pred HHHHHHHHcCChhhhhhh-----------cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCcccc-CCCCCcHHHHHHh
Q 023608 171 KPILDEIESGGPSAMMKY-----------WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEV-GNEDESIVHHTAS 238 (280)
Q Consensus 171 ~~i~e~i~~~g~~al~~~-----------~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~-D~~g~TpLh~Aa~ 238 (280)
+++++.|.+++.++.... -+.-.++.+.+ --|..+.|+.|++.|+|||.. +..+.||||+|+.
T Consensus 14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAa-----ykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL 88 (396)
T KOG1710|consen 14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAA-----YKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL 88 (396)
T ss_pred hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHH-----hcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence 566777777765543321 22223444444 557889999999999999864 5678999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 239 VGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 239 ~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
.|+.++.++|++.|+.....+.-|+|+-.+|+.-||.+
T Consensus 89 SGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~ 126 (396)
T KOG1710|consen 89 SGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHE 126 (396)
T ss_pred cCCchHHHHHHhccCccccccchhhhHHHHHHHhcchH
Confidence 99999999999999999999999999999999988865
No 82
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.44 E-value=8.4e-07 Score=81.65 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=62.0
Q ss_pred CCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCCC
Q 023608 207 GGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE-EDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 207 g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~-~D~~G~TPLH~Aa~~G~~e 276 (280)
++.+....|++.--.+|.+|..|.|+|..|++.|+.+.|+.||+.|+|||. ++..++||||+|+..|..+
T Consensus 23 ndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~d 93 (396)
T KOG1710|consen 23 NDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQD 93 (396)
T ss_pred CcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCch
Confidence 455667778888777999999999999999999999999999999999987 6778999999999988653
No 83
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=3.4e-07 Score=89.70 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=54.9
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHH
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE-EDSEGRTALH 267 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~-~D~~G~TPLH 267 (280)
-.|+.++|++||..|++||..|.+||||||+||.++++-+++.|++.|+-|-+ .-.++.|+..
T Consensus 592 CaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~e 655 (752)
T KOG0515|consen 592 CAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAE 655 (752)
T ss_pred hcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhh
Confidence 45788999999999999999999999999999999999999999999988755 3445666643
No 84
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.42 E-value=8.5e-07 Score=91.11 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=75.4
Q ss_pred HHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc--
Q 023608 174 LDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA-- 251 (280)
Q Consensus 174 ~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~-- 251 (280)
++.+...+...-.......+.+|..+ ..++.+++++|++.|++++.+|..|.||||+|+.+|+.+++++|+.+
T Consensus 98 vk~LL~~Gadin~~d~~G~TpLh~Aa-----~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~ 172 (664)
T PTZ00322 98 ARILLTGGADPNCRDYDGRTPLHIAC-----ANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQ 172 (664)
T ss_pred HHHHHHCCCCCCCcCCCCCcHHHHHH-----HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCC
Confidence 44444455444444445556666665 67889999999999999999999999999999999999999999999
Q ss_pred -----CCCCCCCCCCCCcHHHHHH
Q 023608 252 -----GADKDEEDSEGRTALHFAC 270 (280)
Q Consensus 252 -----GAdvn~~D~~G~TPLH~Aa 270 (280)
|++++..+..|++|+..++
T Consensus 173 ~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 173 CHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred cccccCCCCCccccCCCCccchhh
Confidence 9999999999998887655
No 85
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.32 E-value=5.4e-07 Score=92.14 Aligned_cols=77 Identities=13% Similarity=0.104 Sum_probs=67.6
Q ss_pred HHHhHHhhhhccCCHHHHHHHHhCCCCccccCCC-CCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 023608 195 LQKLGEAMGLAVGGDATTSADNAGADEAEEVGNE-DESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACG 271 (280)
Q Consensus 195 l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~-g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~ 271 (280)
+...+..+.++.+..+++++|+.+|+|++.+|++ |+||||.|.++|+++|+-.||.+|+.+..+|++|..||.+-|.
T Consensus 51 ~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 51 YGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred hccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence 3333434444777889999999999999999955 9999999999999999999999999999999999999998876
No 86
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.31 E-value=1.5e-06 Score=84.61 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=67.3
Q ss_pred hccCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 204 LAVGGDATTSADNAGADEAEEVG-NEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 204 ~~~g~~~~v~~Ll~~gadvn~~D-~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
+..++.++.=-||+.|+++|.-+ ..|.||||.|+..|..-.+++|+-+|||+.+.|.+|.||+.||-..||.+
T Consensus 141 vRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~ 214 (669)
T KOG0818|consen 141 VRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE 214 (669)
T ss_pred hhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence 36778888889999999999877 55999999999999999999999999999999999999999999999865
No 87
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=98.30 E-value=9.5e-07 Score=91.43 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=61.5
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcC---------CHHHHHHHHHcCCCC-------CCCCCCCCcHHHH
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVG---------DAEGLKNALAAGADK-------DEEDSEGRTALHF 268 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G---------~~eivk~LL~~GAdv-------n~~D~~G~TPLH~ 268 (280)
..++.+++++|++.|+|++.+|..|+||||+|+..+ ...+.++++..++.+ +.+|.+|.||||+
T Consensus 184 ~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~ 263 (743)
T TIGR00870 184 CLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKL 263 (743)
T ss_pred HhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhh
Confidence 557789999999999999999999999999999886 344667777766554 6679999999999
Q ss_pred HHHcCCCC
Q 023608 269 ACGYGEVC 276 (280)
Q Consensus 269 Aa~~G~~e 276 (280)
|+..|+.+
T Consensus 264 A~~~g~~~ 271 (743)
T TIGR00870 264 AAKEGRIV 271 (743)
T ss_pred hhhcCCcc
Confidence 99999876
No 88
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.28 E-value=4.1e-07 Score=88.12 Aligned_cols=72 Identities=25% Similarity=0.203 Sum_probs=66.1
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA-GADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~-GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
..|+...++-+.-.|.|++.+|++.+|+||+||..|++++++|||.. +.+.+.+|++|+|||.-|..++|.+
T Consensus 515 ~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~ 587 (622)
T KOG0506|consen 515 KNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE 587 (622)
T ss_pred hcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence 56777888888889999999999999999999999999999999995 6899999999999999999988864
No 89
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=98.21 E-value=1.7e-06 Score=87.78 Aligned_cols=72 Identities=22% Similarity=0.155 Sum_probs=68.2
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
-.|+.++++.|+.+++.+|....+|.||||.|+..||.++|.+||.+|+|.-.++..+.|+|-+||+.|.++
T Consensus 91 w~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~ 162 (854)
T KOG0507|consen 91 WNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAE 162 (854)
T ss_pred hcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhH
Confidence 457789999999999999999999999999999999999999999999999999999999999999999765
No 90
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.20 E-value=2.2e-06 Score=84.02 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=54.9
Q ss_pred hCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608 217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEV 275 (280)
Q Consensus 217 ~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~ 275 (280)
+....|+.+|..|+||||+|+..|++++++.|+.+|+++..++.+||+|||-|+.+|.-
T Consensus 43 ~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~ 101 (560)
T KOG0522|consen 43 KVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE 101 (560)
T ss_pred hhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence 35567899999999999999999999999999999999999999999999999998864
No 91
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=97.95 E-value=2e-06 Score=88.11 Aligned_cols=56 Identities=29% Similarity=0.242 Sum_probs=53.1
Q ss_pred CccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCCC
Q 023608 221 EAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDS-EGRTALHFACGYGEVC 276 (280)
Q Consensus 221 dvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~-~G~TPLH~Aa~~G~~e 276 (280)
-.|.+|..|+|+||+++..+...++++||.+|+||+.+|. .|+||||-|..|||+|
T Consensus 44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~id 100 (1267)
T KOG0783|consen 44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNID 100 (1267)
T ss_pred hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHH
Confidence 3788999999999999999999999999999999999998 5999999999999987
No 92
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.95 E-value=1.3e-05 Score=82.12 Aligned_cols=73 Identities=16% Similarity=0.143 Sum_probs=67.2
Q ss_pred hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCCC
Q 023608 204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD--KDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd--vn~~D~~G~TPLH~Aa~~G~~e 276 (280)
+-.++.+++++|+++|+|++.+|..|+|.||....+-..++..+++++|++ ...+++.|-|||-+||.-|..+
T Consensus 248 AC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~e 322 (782)
T KOG3676|consen 248 ACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKE 322 (782)
T ss_pred HHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHH
Confidence 355777999999999999999999999999999999889999999999999 8899999999999999877654
No 93
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=97.88 E-value=1.6e-05 Score=78.86 Aligned_cols=66 Identities=24% Similarity=0.209 Sum_probs=55.0
Q ss_pred HHHHHHHHhCCCC--ccc--cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608 209 DATTSADNAGADE--AEE--VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274 (280)
Q Consensus 209 ~~~v~~Ll~~gad--vn~--~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~ 274 (280)
...+-+|+++|-. +|+ .+.+|+|+||+||..|++.+.++||=+|+|+.++|..|+|+|.||-..|.
T Consensus 637 l~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s 706 (749)
T KOG0705|consen 637 LQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS 706 (749)
T ss_pred HHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence 3456677887753 333 45678999999999999999999999999999999999999999976553
No 94
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=97.81 E-value=2.5e-05 Score=54.68 Aligned_cols=43 Identities=7% Similarity=0.033 Sum_probs=27.0
Q ss_pred cCchhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHH
Q 023608 189 WNDKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHT 236 (280)
Q Consensus 189 ~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~A 236 (280)
....+.+|..+ ..|+.+++++|+..|+|++.+|.+|+||||+|
T Consensus 14 ~~G~T~LH~A~-----~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 14 KYGNTPLHWAA-----RYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp TTS--HHHHHH-----HHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCCCcHHHHHH-----HcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 44446666666 67888999999999999999999999999997
No 95
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=97.71 E-value=1.2e-05 Score=84.66 Aligned_cols=80 Identities=20% Similarity=0.165 Sum_probs=68.4
Q ss_pred HhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHHcCCC
Q 023608 197 KLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE-EDSEGRTALHFACGYGEV 275 (280)
Q Consensus 197 ~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~-~D~~G~TPLH~Aa~~G~~ 275 (280)
++.+-+.+..|+.+.|++|+..|++|+.+|+.|.+||++|+-.||..+|+.|+++.++|++ .|+.+.|+|.+||..|..
T Consensus 758 ~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~ 837 (2131)
T KOG4369|consen 758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRT 837 (2131)
T ss_pred cccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcc
Confidence 3344444567888999999999999999999999999999999999999999999999988 578899999999987765
Q ss_pred C
Q 023608 276 C 276 (280)
Q Consensus 276 e 276 (280)
+
T Consensus 838 ~ 838 (2131)
T KOG4369|consen 838 R 838 (2131)
T ss_pred h
Confidence 4
No 96
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=97.65 E-value=8.4e-05 Score=73.81 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=76.7
Q ss_pred HcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHHHHhCCCC--ccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 023608 178 ESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSADNAGADE--AEEVGNEDESIVHHTASVGDAEGLKNALAAGADK 255 (280)
Q Consensus 178 ~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gad--vn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdv 255 (280)
-.+|-+.++..-..-.++|+.+ ..|.-++|++++.+|.. +|..|..|.|+||.|+..++..+.++|++.|+.+
T Consensus 886 h~~gg~ll~~~~~~~sllh~a~-----~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl 960 (1004)
T KOG0782|consen 886 HLNGGSLLIQGPDHCSLLHYAA-----KTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASL 960 (1004)
T ss_pred HhcCCceEeeCcchhhHHHHHH-----hcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh
Confidence 3344455555555556677766 77888999999999874 5778899999999999999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHcCCC
Q 023608 256 DEEDSEGRTALHFACGYGEV 275 (280)
Q Consensus 256 n~~D~~G~TPLH~Aa~~G~~ 275 (280)
...|..|.||-.-|-..|..
T Consensus 961 ~ktd~kg~tp~eraqqa~d~ 980 (1004)
T KOG0782|consen 961 RKTDSKGKTPQERAQQAGDP 980 (1004)
T ss_pred eecccCCCChHHHHHhcCCc
Confidence 99999999999888766554
No 97
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.54 E-value=0.00017 Score=68.74 Aligned_cols=61 Identities=16% Similarity=0.099 Sum_probs=54.8
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTA 265 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TP 265 (280)
..|+.+.|+.|++-|.+||..|....+||.+||.+||..+|++|+++||-...-.-+|...
T Consensus 45 R~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC 105 (516)
T KOG0511|consen 45 RAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC 105 (516)
T ss_pred hcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence 5688899999999999999999999999999999999999999999999877655566554
No 98
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.35 E-value=0.00016 Score=75.59 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=65.7
Q ss_pred hhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608 203 GLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274 (280)
Q Consensus 203 g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~ 274 (280)
.+..+...++++|+..|+++|.+|..|+||||.+...|+...+..|+++|++.++.|.+|++||++|....+
T Consensus 663 a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~ 734 (785)
T KOG0521|consen 663 AVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN 734 (785)
T ss_pred hhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence 346677788999999999999999999999999999999999999999999999999999999999976533
No 99
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.35 E-value=0.00021 Score=62.42 Aligned_cols=55 Identities=18% Similarity=0.087 Sum_probs=31.6
Q ss_pred CCccccCCCCCcHHHHHHhcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCC
Q 023608 220 DEAEEVGNEDESIVHHTASVGDAEGLKNALAAG-ADKDEEDSEGRTALHFACGYGE 274 (280)
Q Consensus 220 advn~~D~~g~TpLh~Aa~~G~~eivk~LL~~G-Advn~~D~~G~TPLH~Aa~~G~ 274 (280)
.+||.+|..|+|+|..|+..|..+.|.+|+.+| ++|-+.|..|.+.+.+|-..|+
T Consensus 3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~ 58 (223)
T KOG2384|consen 3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGA 58 (223)
T ss_pred CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcCh
Confidence 345555556666666665556666666666555 5555555555555555554443
No 100
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=97.18 E-value=0.00043 Score=66.11 Aligned_cols=46 Identities=15% Similarity=0.220 Sum_probs=43.4
Q ss_pred cHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 023608 231 SIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVC 276 (280)
Q Consensus 231 TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e 276 (280)
--|+.||+.|+++.|++|++.|.+||.+|+....||.+||.+||.+
T Consensus 38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~ 83 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHED 83 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHH
Confidence 3478999999999999999999999999999999999999999965
No 101
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=97.16 E-value=0.00023 Score=75.43 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 023608 210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD 254 (280)
Q Consensus 210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd 254 (280)
++|++||.+|++...++-...|||.+|+.-|.++||+.||.+|+.
T Consensus 838 ~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~Gse 882 (2131)
T KOG4369|consen 838 RVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSE 882 (2131)
T ss_pred hHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccc
Confidence 334444444444433433334444444444444444444444433
No 102
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=97.00 E-value=0.0014 Score=36.79 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=26.2
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHcCCCCC
Q 023608 228 EDESIVHHTASVGDAEGLKNALAAGADKD 256 (280)
Q Consensus 228 ~g~TpLh~Aa~~G~~eivk~LL~~GAdvn 256 (280)
.+.|+||+++..++.+++++|+..+.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~ 29 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 37899999999999999999999988764
No 103
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=96.97 E-value=0.00093 Score=43.80 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=14.5
Q ss_pred HhhCChHHHHHHHHHhcCC
Q 023608 63 GLLNDPSIKELAEQIAKDP 81 (280)
Q Consensus 63 ~~~~~p~~~~~~~~~~~~p 81 (280)
++++||.+.++.++|++||
T Consensus 6 ~~l~~P~~~~~l~~~~~nP 24 (41)
T smart00727 6 LRLQNPQVQSLLQDMQQNP 24 (41)
T ss_pred HHHcCHHHHHHHHHHHHCH
Confidence 4666888888877788888
No 104
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.87 E-value=0.00037 Score=73.28 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=34.3
Q ss_pred HHHHHHHhC-CCCccccCCCCCcHHHHHHhcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCC
Q 023608 210 ATTSADNAG-ADEAEEVGNEDESIVHHTASVGDAEGLKNALA-AGADKDEEDSEGRTALHFACGYGEV 275 (280)
Q Consensus 210 ~~v~~Ll~~-gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~-~GAdvn~~D~~G~TPLH~Aa~~G~~ 275 (280)
-+++.+++- +-...+.|.++.-.+|+ |..++.+++-+|+. .|..++.+|..||||||||+.+||.
T Consensus 588 wLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e 654 (975)
T KOG0520|consen 588 WLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGRE 654 (975)
T ss_pred HHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHH
Confidence 344444442 44444555555555566 33344444444433 4566666666666666666666653
No 105
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.66 E-value=0.0041 Score=61.25 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCCCccc------cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 023608 209 DATTSADNAGADEAEE------VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFAC 270 (280)
Q Consensus 209 ~~~v~~Ll~~gadvn~------~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa 270 (280)
...+++|.+++.+.|. .+.--.|+||+|+..|..+||.+||+.|+|.-++|..|+||..++.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 3578888888887653 3445678999999999999999999999999999999999987654
No 106
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=96.43 E-value=0.0028 Score=63.34 Aligned_cols=57 Identities=30% Similarity=0.323 Sum_probs=49.9
Q ss_pred hCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcC
Q 023608 217 AGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGAD--KDEEDSEGRTALHFACGYG 273 (280)
Q Consensus 217 ~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd--vn~~D~~G~TPLH~Aa~~G 273 (280)
.+|.++-.++.+..+.||+|+..|+-++|+|+|++|.. ++..|..|.|.||-|+..+
T Consensus 887 ~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~ 945 (1004)
T KOG0782|consen 887 LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR 945 (1004)
T ss_pred hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence 45666888899999999999999999999999999964 6889999999999887654
No 107
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=96.42 E-value=0.002 Score=67.45 Aligned_cols=61 Identities=31% Similarity=0.324 Sum_probs=52.4
Q ss_pred hCCCCccc--cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCC
Q 023608 217 AGADEAEE--VGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVCS 277 (280)
Q Consensus 217 ~~gadvn~--~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e~ 277 (280)
..++++|- .-..|.|+||.||.++...++++|+..|+++|.+|..|+||||.+...||...
T Consensus 642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~ 704 (785)
T KOG0521|consen 642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSI 704 (785)
T ss_pred cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccch
Confidence 44555553 23567999999999999999999999999999999999999999999888754
No 108
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.34 E-value=0.0063 Score=56.65 Aligned_cols=62 Identities=23% Similarity=0.393 Sum_probs=45.1
Q ss_pred hhcHHHH-HHhhCChHHHHHHHHHhcCC---------h--HHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccCh
Q 023608 55 PFDFSAM-SGLLNDPSIKELAEQIAKDP---------A--FNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNP 122 (280)
Q Consensus 55 p~~~~~~-~~~~~~p~~~~~~~~~~~~p---------~--~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np 122 (280)
|..+++. .+||+||.+++++++||+|+ . ...|+.-++. ++++|.... .+++|
T Consensus 219 Pd~~s~~~~~l~nnp~l~~~~~~m~~~~~~~~~~~~~~~~~~~i~~~~~a-------~~q~~~~~~---------~~n~p 282 (304)
T KOG0553|consen 219 PDSRSMFNGDLMNNPQLMQLASQMMKDGALNGPKNGPDNKTDMIASLIGA-------GGQMPELSD---------GANPP 282 (304)
T ss_pred ccchhhhccccccCHHHHHHHHHHhhcccccCccCCCcchhhHHHHHHhc-------cCCCCcccc---------ccCCH
Confidence 5555555 48999999999999999842 2 5566666654 677777763 78889
Q ss_pred HHHHHHHHHH
Q 023608 123 QFMTMAERLG 132 (280)
Q Consensus 123 ~~~~ma~~~~ 132 (280)
.+.++..+++
T Consensus 283 ~~e~~~~~~~ 292 (304)
T KOG0553|consen 283 LIENLRGNFG 292 (304)
T ss_pred HHHHHHhhcC
Confidence 8888887764
No 109
>PF13606 Ank_3: Ankyrin repeat
Probab=96.30 E-value=0.0018 Score=39.69 Aligned_cols=16 Identities=38% Similarity=0.669 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHcCCCC
Q 023608 261 EGRTALHFACGYGEVC 276 (280)
Q Consensus 261 ~G~TPLH~Aa~~G~~e 276 (280)
+|+||||+||.+|++|
T Consensus 1 ~G~T~Lh~A~~~g~~e 16 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIE 16 (30)
T ss_pred CCCCHHHHHHHhCCHH
Confidence 5899999999999876
No 110
>smart00727 STI1 Heat shock chaperonin-binding motif.
Probab=96.26 E-value=0.0014 Score=42.92 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=27.2
Q ss_pred CCCCChhcHHHHHHhhCChHHHHHHHHHhc-CChHHH
Q 023608 50 GAAPNPFDFSAMSGLLNDPSIKELAEQIAK-DPAFNS 85 (280)
Q Consensus 50 ~~~~~p~~~~~~~~~~~~p~~~~~~~~~~~-~p~~~~ 85 (280)
..+.||.+.+.++.|++|| ++.+++++ ||.+++
T Consensus 6 ~~l~~P~~~~~l~~~~~nP---~~~~~~~~~nP~~~~ 39 (41)
T smart00727 6 LRLQNPQVQSLLQDMQQNP---DMLAQMLQENPQLLQ 39 (41)
T ss_pred HHHcCHHHHHHHHHHHHCH---HHHHHHHHhCHHhHh
Confidence 4567999999999999999 55567888 997764
No 111
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=96.08 E-value=0.017 Score=57.86 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=47.7
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADK 255 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdv 255 (280)
..|++.+.++|+=.|+|+-.+|..|+|+|.||-..|..+|+.+||.+|+.-
T Consensus 670 ~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 670 RKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD 720 (749)
T ss_pred hhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence 667788999999999999999999999999999999999999999999753
No 112
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=95.91 E-value=0.0048 Score=60.51 Aligned_cols=52 Identities=33% Similarity=0.371 Sum_probs=47.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCC
Q 023608 226 GNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGEVCS 277 (280)
Q Consensus 226 D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~~e~ 277 (280)
+.++...+.+|+..|++..++.+.-.|.|++.+|.+.||.||+|+..||++.
T Consensus 503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v 554 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEV 554 (622)
T ss_pred cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeH
Confidence 4556678999999999999999988999999999999999999999999874
No 113
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=95.84 E-value=0.0079 Score=63.62 Aligned_cols=61 Identities=21% Similarity=0.209 Sum_probs=48.9
Q ss_pred HHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHcCCC
Q 023608 215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDE------EDSEGRTALHFACGYGEV 275 (280)
Q Consensus 215 Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~------~D~~G~TPLH~Aa~~G~~ 275 (280)
....|..++.+|..|+||||||+.+|+..++..|++.|++-.. ..-.|.|+--.|...||-
T Consensus 627 ~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~ 693 (975)
T KOG0520|consen 627 ISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHK 693 (975)
T ss_pred EeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccccc
Confidence 3457788999999999999999999999999999987765432 334578888777776663
No 114
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.96 E-value=0.046 Score=54.36 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=43.8
Q ss_pred hccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608 204 LAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA 251 (280)
Q Consensus 204 ~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~ 251 (280)
+..|+...++.|+.+|+|+-.++.+|+++||.|+.+|+..++..+|.+
T Consensus 63 V~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 63 VRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH 110 (560)
T ss_pred HHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence 367888999999999999999999999999999999999998877765
No 115
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=94.81 E-value=0.072 Score=46.89 Aligned_cols=69 Identities=6% Similarity=-0.045 Sum_probs=57.1
Q ss_pred HhHHhhhhccCCHHHHHHHHhCC-CCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 023608 197 KLGEAMGLAVGGDATTSADNAGA-DEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGRTA 265 (280)
Q Consensus 197 ~~~~~~g~~~g~~~~v~~Ll~~g-advn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TP 265 (280)
-++..+++..|..+++.+|+.+| ++|...|..+.+.+.+|-..|..++|+.|.+...+....+..-.++
T Consensus 13 WTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~e 82 (223)
T KOG2384|consen 13 WTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRDE 82 (223)
T ss_pred chHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCCC
Confidence 34445566778889999999999 9999999999999999999999999999999877666655544443
No 116
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=94.01 E-value=0.42 Score=41.24 Aligned_cols=128 Identities=13% Similarity=0.251 Sum_probs=84.3
Q ss_pred CChhcHHHHHHhhCChHHHHHHHHHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccChHHHHHHHHHH
Q 023608 53 PNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLG 132 (280)
Q Consensus 53 ~~p~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np~~~~ma~~~~ 132 (280)
.++.+..+ =..|+.+.++++.+++.+.|.|+..-+=|.+.. +|+-.|++....+..=|.+..-- .
T Consensus 30 ~D~efq~~-~~yl~s~~f~~l~~~l~~~pE~~~l~~yL~~~g-----------ldv~~~i~~i~~~l~~~~~~p~~---~ 94 (179)
T PF06757_consen 30 EDAEFQAA-VRYLNSSEFKQLWQQLEALPEVKALLDYLESAG-----------LDVYYYINQINDLLGLPPLNPTP---S 94 (179)
T ss_pred cCHHHHHH-HHHHcChHHHHHHHHHHcCHHHHHHHHHHHHCC-----------CCHHHHHHHHHHHHcCCcCCCCc---c
Confidence 34443333 345566778888888888888888888887632 67777777777776544441000 0
Q ss_pred hhhcCCchhhHhHhhhcCcChHHHHHHHH-HHhhcCCChHHHHHHHHcCChhhhh-hhcCchhHH
Q 023608 133 NALMQDPSMSHMMESLTNPTKKDQIEERM-AKIKEDPSLKPILDEIESGGPSAMM-KYWNDKDVL 195 (280)
Q Consensus 133 ~~lm~dP~l~~ml~~l~n~~~~~~~~~~l-~~lk~dp~~~~i~e~i~~~g~~al~-~~~~d~~~l 195 (280)
.....-..+..+++.+..--+..++.... .++++++.|+.+.+.+.+.....+. +.|..+++.
T Consensus 95 ~~~~~~~g~~g~~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~~~~~~~~~ 159 (179)
T PF06757_consen 95 LSCSRGGGLNGFVDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNALWASPEFQ 159 (179)
T ss_pred cccccCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHHHHcCHHHH
Confidence 00003344667777777777777777554 7888899999999998887655544 457776665
No 117
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=93.43 E-value=0.41 Score=45.27 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=22.6
Q ss_pred hhCChHHHHHHHHHhcCChHHH-HHHHHHH
Q 023608 64 LLNDPSIKELAEQIAKDPAFNS-MAEQLQK 92 (280)
Q Consensus 64 ~~~~p~~~~~~~~~~~~p~~~~-ma~~~~~ 92 (280)
|.++|+|.+|-+-|.+||++-+ |-+||++
T Consensus 219 Lr~~~qf~~lR~~iqqNP~ll~~~Lqqlg~ 248 (340)
T KOG0011|consen 219 LRNQPQFQQLRQMIQQNPELLHPLLQQLGK 248 (340)
T ss_pred hhccHHHHHHHHHHhhCHHHHHHHHHHHhh
Confidence 7889999999888999996543 6666654
No 118
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=92.75 E-value=0.2 Score=30.68 Aligned_cols=23 Identities=9% Similarity=-0.049 Sum_probs=20.5
Q ss_pred ccCCHHHHHHHHhCCCCccccCC
Q 023608 205 AVGGDATTSADNAGADEAEEVGN 227 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~ 227 (280)
..+..++++.|+++|++++.+|+
T Consensus 11 ~~~~~~~v~~Ll~~ga~~~~~d~ 33 (33)
T PF00023_consen 11 QRGHPDIVKLLLKHGADINARDN 33 (33)
T ss_dssp HTTCHHHHHHHHHTTSCTTCBCT
T ss_pred HHHHHHHHHHHHHCcCCCCCCCC
Confidence 66788999999999999998874
No 119
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=91.84 E-value=1 Score=44.81 Aligned_cols=58 Identities=24% Similarity=0.456 Sum_probs=31.9
Q ss_pred HHHHhhCChHHHHHHHHHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccChHHHHHHHHHH--hhhcC
Q 023608 60 AMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLG--NALMQ 137 (280)
Q Consensus 60 ~~~~~~~~p~~~~~~~~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np~~~~ma~~~~--~~lm~ 137 (280)
+-++++++| ++.-+||.||.+.+|-.+. .+|.+ -||.||+++++.++-- .-+.+
T Consensus 148 ~q~~~~snp---e~~~~~m~nP~vq~ll~Np-------------------d~mrq--~I~anPqmq~lm~~npei~h~ln 203 (493)
T KOG0010|consen 148 MQNQLLSNP---EALRQMMENPIVQSLLNNP-------------------DLMRQ--LIMANPQMQDLMQRNPEIGHLLN 203 (493)
T ss_pred chhccccCH---HHHHHhhhChHHHHHhcCh-------------------HHHHH--HHhcCHHHHHHHhhCCcchhhhc
Confidence 445677777 5556777777555544431 11221 2667777777665532 34455
Q ss_pred Cchh
Q 023608 138 DPSM 141 (280)
Q Consensus 138 dP~l 141 (280)
+|.+
T Consensus 204 ~p~i 207 (493)
T KOG0010|consen 204 NPLI 207 (493)
T ss_pred ChHH
Confidence 5553
No 120
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=89.94 E-value=2 Score=43.00 Aligned_cols=47 Identities=9% Similarity=-0.034 Sum_probs=42.0
Q ss_pred ccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHc
Q 023608 205 AVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAA 251 (280)
Q Consensus 205 ~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~ 251 (280)
..|...-+++|+--|+|+...|.+|.||+.+|-..||.++.+.|++.
T Consensus 176 k~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 176 KAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI 222 (669)
T ss_pred hccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence 56666778999999999999999999999999999999998887763
No 121
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.97 E-value=0.8 Score=48.09 Aligned_cols=55 Identities=18% Similarity=0.007 Sum_probs=41.8
Q ss_pred hccCCHHHHHHHHhCCCCcc----------ccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCC
Q 023608 204 LAVGGDATTSADNAGADEAE----------EVGNEDESIVHHTASVGDAEGLKNALAAGADKDEE 258 (280)
Q Consensus 204 ~~~g~~~~v~~Ll~~gadvn----------~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~ 258 (280)
+..+...+|+.++.+-.+.. ..=..+.|||.+||..++.+|+++||.+|+.+...
T Consensus 96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P 160 (822)
T KOG3609|consen 96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP 160 (822)
T ss_pred HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence 34566677888876554431 12245799999999999999999999999998664
No 122
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=84.18 E-value=3.9 Score=40.75 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=9.6
Q ss_pred HHhhCChHHHHHHHHHhcCC
Q 023608 62 SGLLNDPSIKELAEQIAKDP 81 (280)
Q Consensus 62 ~~~~~~p~~~~~~~~~~~~p 81 (280)
++|++ |.+..|.+.+.++|
T Consensus 348 ~~l~s-~~~~~m~~~~s~~P 366 (493)
T KOG0010|consen 348 QQLLS-PYIRSMFQSASQNP 366 (493)
T ss_pred hhccc-hhhHHHHhhhccCc
Confidence 34444 45555555555555
No 123
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.78 E-value=2.2 Score=44.86 Aligned_cols=79 Identities=14% Similarity=0.036 Sum_probs=58.2
Q ss_pred chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC----------CCCC
Q 023608 191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKD----------EEDS 260 (280)
Q Consensus 191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn----------~~D~ 260 (280)
-.+.+...+..+.+...+.+++++|+....++ ..+|.+|...|.+++|++++.+-.... ..=.
T Consensus 57 c~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft 129 (822)
T KOG3609|consen 57 CRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFT 129 (822)
T ss_pred ccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCC
Confidence 33455555655666677889999999887755 567899999999999999998754431 1223
Q ss_pred CCCcHHHHHHHcCCCC
Q 023608 261 EGRTALHFACGYGEVC 276 (280)
Q Consensus 261 ~G~TPLH~Aa~~G~~e 276 (280)
.+-|||.+||.+++.|
T Consensus 130 ~ditPliLAAh~NnyE 145 (822)
T KOG3609|consen 130 PDITPLMLAAHLNNFE 145 (822)
T ss_pred CCccHHHHHHHhcchH
Confidence 4579999999988765
No 124
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=82.26 E-value=4.5 Score=28.83 Aligned_cols=29 Identities=24% Similarity=0.490 Sum_probs=19.8
Q ss_pred HhhCChHHHHHHHHHhcCChH-HHHHHHHH
Q 023608 63 GLLNDPSIKELAEQIAKDPAF-NSMAEQLQ 91 (280)
Q Consensus 63 ~~~~~p~~~~~~~~~~~~p~~-~~ma~~~~ 91 (280)
.|.++|.|.+|-+-+.+||+. ..+-++++
T Consensus 3 ~Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~ 32 (59)
T PF09280_consen 3 FLRNNPQFQQLRQLVQQNPQLLPPLLQQLG 32 (59)
T ss_dssp GGTTSHHHHHHHHHHHC-GGGHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHHCHHHHHHHHHHHh
Confidence 578888888888888888853 33555544
No 125
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=79.68 E-value=2.6 Score=32.62 Aligned_cols=51 Identities=20% Similarity=0.438 Sum_probs=32.0
Q ss_pred HHHHhccChHHHHHHHHHHhhhcCCchhhHhHhhhcCcChHHHHHHHHHHh
Q 023608 114 TMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKI 164 (280)
Q Consensus 114 ~m~~~m~np~~~~ma~~~~~~lm~dP~l~~ml~~l~n~~~~~~~~~~l~~l 164 (280)
.|.++|+++.|.+-.+.+.+.+..||.++..+..=...-....++.-+.+|
T Consensus 7 ~l~~~~~~~~~~~~~~~l~~~vl~dp~V~~Fl~~h~~eLt~~~i~rsl~kL 57 (94)
T PF07319_consen 7 SLKQLMKRRNFEERYEQLKQEVLSDPEVQAFLQEHQPELTQEMIERSLSKL 57 (94)
T ss_dssp S----S---HHHHHHHHHHHHHTT-HHHHHHHHHSTTT--HHHHHHTHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHcCHHHHHHHHHhHHhcCHHHHHHHHHHH
Confidence 456789999999999999999999999999887664455555565555544
No 126
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=77.77 E-value=13 Score=31.33 Aligned_cols=54 Identities=17% Similarity=0.379 Sum_probs=38.1
Q ss_pred HHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccChHHHHHHHHHHhhhcCCchhhHh
Q 023608 76 QIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHM 144 (280)
Q Consensus 76 ~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np~~~~ma~~~~~~lm~dP~l~~m 144 (280)
.+-.||.+|++-+++-.+. -.++.|...|+-|.|+..|+...+.+...|+....
T Consensus 92 sll~dp~Lr~Li~sid~~~---------------n~~kel~aamqeelfvefadailq~ve~s~dee~~ 145 (157)
T KOG2857|consen 92 SLLEDPHLRNLIESIDELL---------------NIMKELVAAMQEELFVEFADAILQQVEPSPDEEKL 145 (157)
T ss_pred HHHhCHHHHHHHHHHHHHh---------------hHHHHHHHHhcchHHHHHHHHHHHhhcCCCcHHHH
Confidence 3555666666666655543 24567888999999999999888877777776543
No 127
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=72.67 E-value=2.9 Score=35.07 Aligned_cols=35 Identities=26% Similarity=0.496 Sum_probs=24.6
Q ss_pred HHHHHHhhCChHHHHHHHH-------------HhcCChHHHHHHHHHH
Q 023608 58 FSAMSGLLNDPSIKELAEQ-------------IAKDPAFNSMAEQLQK 92 (280)
Q Consensus 58 ~~~~~~~~~~p~~~~~~~~-------------~~~~p~~~~ma~~~~~ 92 (280)
-+.+++|+.||.++++.++ .|+-|.|...|....+
T Consensus 87 sseLrsll~dp~Lr~Li~sid~~~n~~kel~aamqeelfvefadailq 134 (157)
T KOG2857|consen 87 SSELRSLLEDPHLRNLIESIDELLNIMKELVAAMQEELFVEFADAILQ 134 (157)
T ss_pred hHHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHhcchHHHHHHHHHHH
Confidence 3455677888888777776 5677777777776544
No 128
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=70.46 E-value=13 Score=36.12 Aligned_cols=46 Identities=15% Similarity=0.452 Sum_probs=29.6
Q ss_pred HHHhccChHHHHHHHHHHhhhcCCchhh-HhHhhhcCcChHHHHHHHHHHhhcCCC
Q 023608 115 MQQVMQNPQFMTMAERLGNALMQDPSMS-HMMESLTNPTKKDQIEERMAKIKEDPS 169 (280)
Q Consensus 115 m~~~m~np~~~~ma~~~~~~lm~dP~l~-~ml~~l~n~~~~~~~~~~l~~lk~dp~ 169 (280)
+.-|.++|+|.+| .+-+-+||++. .++..|....+ +.+..|.++++
T Consensus 248 l~~Lr~~pqf~~l----R~~vq~NP~~L~~lLqql~~~nP-----~l~q~I~~n~e 294 (378)
T TIGR00601 248 LEFLRNQPQFQQL----RQVVQQNPQLLPPLLQQIGQENP-----QLLQQISQHPE 294 (378)
T ss_pred HHHhhcCHHHHHH----HHHHHHCHHHHHHHHHHHHhhCH-----HHHHHHHHCHH
Confidence 4557888998765 45567788854 56666654443 55666666655
No 129
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.09 E-value=15 Score=37.02 Aligned_cols=50 Identities=32% Similarity=0.551 Sum_probs=36.8
Q ss_pred HHhhCChHHHHHHHHHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccChHHHHHHHHHHhh
Q 023608 62 SGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNA 134 (280)
Q Consensus 62 ~~~~~~p~~~~~~~~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np~~~~ma~~~~~~ 134 (280)
++-|.||.+++ |++||..+...+|+|+-. +.+.=|+||.+....++|.+.
T Consensus 484 ~r~~~dpev~~----il~d~~m~~~l~q~q~~p-------------------a~~~~~~n~~v~~ki~~l~~~ 533 (539)
T KOG0548|consen 484 RRAMADPEVQA----ILQDPAMRQILEQMQENP-------------------ALQEHLKNPMVMQKIEKLISA 533 (539)
T ss_pred HhhccCHHHHH----HHcCHHHHHHHHHHHhCH-------------------HHHHHHhccHHHHHHHHHHHh
Confidence 46788887776 678888888888877621 455678888888888877654
No 130
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=65.73 E-value=8.7 Score=36.11 Aligned_cols=29 Identities=21% Similarity=0.507 Sum_probs=24.2
Q ss_pred hhCC-hHHHHHHH-HHhcCChHHHHHHHHHH
Q 023608 64 LLND-PSIKELAE-QIAKDPAFNSMAEQLQK 92 (280)
Q Consensus 64 ~~~~-p~~~~~~~-~~~~~p~~~~ma~~~~~ 92 (280)
+++. |.++.|.- .||+||.++++|+++..
T Consensus 214 ~ig~~Pd~~s~~~~~l~nnp~l~~~~~~m~~ 244 (304)
T KOG0553|consen 214 LIGAFPDSRSMFNGDLMNNPQLMQLASQMMK 244 (304)
T ss_pred hccCCccchhhhccccccCHHHHHHHHHHhh
Confidence 4444 88888884 89999999999999887
No 131
>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function.; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.
Probab=56.48 E-value=48 Score=27.91 Aligned_cols=97 Identities=13% Similarity=0.194 Sum_probs=49.9
Q ss_pred chhhHhHhhhc--CcChHHHHHHHHHHhhcCCChHH--HHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHHH
Q 023608 139 PSMSHMMESLT--NPTKKDQIEERMAKIKEDPSLKP--ILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTSA 214 (280)
Q Consensus 139 P~l~~ml~~l~--n~~~~~~~~~~l~~lk~dp~~~~--i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~~ 214 (280)
|.++..+..-. ...+...+++.+..+..+|+-.. ..+-+...+...+.....|+.+...........+-+.++..
T Consensus 34 ~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~e~~~~~~~~~~d~~~~D~~li~a~q~~ehyeIA~- 112 (159)
T PF05974_consen 34 PELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVAEAQELIEEFAEDPAVKDAALIAAAQKVEHYEIAA- 112 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHHHHHHHHHT-S-SHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHHHHHHHHhcccCCchHhhHHHHHHHHHHHHHHHHH-
Confidence 66666654332 33566678888999999987544 45555555444444435555554333111111111112211
Q ss_pred HHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 023608 215 DNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA 250 (280)
Q Consensus 215 Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~ 250 (280)
-.|...+|-..|+.++++.|-.
T Consensus 113 --------------Y~tL~~~A~~lG~~e~a~lL~~ 134 (159)
T PF05974_consen 113 --------------YGTLIALAKQLGDEEAAQLLEQ 134 (159)
T ss_dssp --------------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred --------------HHHHHHHHHHcCCHHHHHHHHH
Confidence 1456677888888888877643
No 132
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=56.15 E-value=28 Score=25.90 Aligned_cols=48 Identities=38% Similarity=0.598 Sum_probs=30.5
Q ss_pred hCChHHHHHHHHHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccChHHH
Q 023608 65 LNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFM 125 (280)
Q Consensus 65 ~~~p~~~~~~~~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np~~~ 125 (280)
.+|-.|.++-|-+-+|| |+-||--=+- |+|. .+.-.-|..+|+||.+-
T Consensus 13 vsd~qi~elFq~lT~NP-l~AMa~i~qL---------Gip~---eKLQ~lm~~VMqnP~Li 60 (82)
T PF11212_consen 13 VSDEQINELFQALTQNP-LAAMATIQQL---------GIPQ---EKLQQLMAQVMQNPALI 60 (82)
T ss_pred CCHHHHHHHHHHHhhCH-HHHHHHHHHc---------CCCH---HHHHHHHHHHhcChHHH
Confidence 46788899999999999 6666643222 2332 22333455788888874
No 133
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=55.72 E-value=9.2 Score=29.51 Aligned_cols=36 Identities=28% Similarity=0.465 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhccCCcCCCCCCCChhHHHHHHHHhccChHHHHHHH
Q 023608 70 IKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAE 129 (280)
Q Consensus 70 ~~~~~~~~~~~p~~~~ma~~~~~~~~~~~~~~~~p~~~~~~~~~~m~~~m~np~~~~ma~ 129 (280)
|.+..+++++++.|++-.+++- +++++||.++...+
T Consensus 4 I~~~l~~~~~~~~~~~~~~~l~------------------------~~vl~dp~V~~Fl~ 39 (94)
T PF07319_consen 4 IGDSLKQLMKRRNFEERYEQLK------------------------QEVLSDPEVQAFLQ 39 (94)
T ss_dssp TT-S----S---HHHHHHHHHH------------------------HHHTT-HHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHH------------------------HHHHcCHHHHHHHH
Confidence 3445566778888877777653 46899999987644
No 134
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=54.86 E-value=81 Score=26.98 Aligned_cols=114 Identities=15% Similarity=0.316 Sum_probs=77.1
Q ss_pred CCChhcHHHHHHhhCChHHHHHHHHHhcCC-----hHHHHHHHHHHhhccCCcCCCCCCCChh------------HHHHH
Q 023608 52 APNPFDFSAMSGLLNDPSIKELAEQIAKDP-----AFNSMAEQLQKTLHGANAEESIPQFDTT------------QYYST 114 (280)
Q Consensus 52 ~~~p~~~~~~~~~~~~p~~~~~~~~~~~~p-----~~~~ma~~~~~~~~~~~~~~~~p~~~~~------------~~~~~ 114 (280)
++.+......+.|.+-|.++++.+=|-++- .++..+.-|+ +|.+.+. .+++.
T Consensus 41 l~s~~f~~l~~~l~~~pE~~~l~~yL~~~gldv~~~i~~i~~~l~-----------~~~~~p~~~~~~~~~~g~~g~~~d 109 (179)
T PF06757_consen 41 LNSSEFKQLWQQLEALPEVKALLDYLESAGLDVYYYINQINDLLG-----------LPPLNPTPSLSCSRGGGLNGFVDD 109 (179)
T ss_pred HcChHHHHHHHHHHcCHHHHHHHHHHHHCCCCHHHHHHHHHHHHc-----------CCcCCCCcccccccCCCHHHHHHH
Confidence 556667788899999999999887776543 3444444442 2333222 23333
Q ss_pred HHHhccChHHHHHHHHHHhhhcCCchhhHhHhhhcCcChHHHHHHHHHHhhcCCChHHHHHHHHcCChh
Q 023608 115 MQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPS 183 (280)
Q Consensus 115 m~~~m~np~~~~ma~~~~~~lm~dP~l~~ml~~l~n~~~~~~~~~~l~~lk~dp~~~~i~e~i~~~g~~ 183 (280)
.-.++-=-+++.+ +-+.+.++|.|+...+.+.... +++.+.++.+++.++.++..+.+.|-+
T Consensus 110 i~~~lP~~~l~aL---~~~K~~~s~~F~~f~~~l~S~e----f~~~~~~~~~~~~~~~~~~~L~~~Gvd 171 (179)
T PF06757_consen 110 ILALLPRDKLRAL---YEEKLATSPEFAEFVEALRSPE----FQQLYNALWASPEFQRLLNELRENGVD 171 (179)
T ss_pred HHHHCCHHHHHHH---HHHHHHCCHHHHHHHHHHcCHH----HHHHHHHHHcCHHHHHHHHHHHHcCCC
Confidence 3333332333333 4568888999999998887765 678899999999999999998887753
No 135
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=54.82 E-value=37 Score=34.22 Aligned_cols=51 Identities=8% Similarity=-0.029 Sum_probs=38.7
Q ss_pred chhHHHHhHHhhhhccCCHHHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 023608 191 DKDVLQKLGEAMGLAVGGDATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNAL 249 (280)
Q Consensus 191 d~~~l~~~~~~~g~~~g~~~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL 249 (280)
..+.||..+ ..|.-..|..||+.|+|.-.+|..|+||..+++ +.++-..++
T Consensus 430 tsT~LH~aa-----~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~ 480 (591)
T KOG2505|consen 430 TSTFLHYAA-----AQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI 480 (591)
T ss_pred cchHHHHHH-----hcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence 445566655 667778899999999999999999999998876 444444444
No 136
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=51.08 E-value=79 Score=26.53 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=54.0
Q ss_pred hhcCCchhhHhHhhhc--CcChHHHHHHHHHHhhcCCChH--HHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCH
Q 023608 134 ALMQDPSMSHMMESLT--NPTKKDQIEERMAKIKEDPSLK--PILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGD 209 (280)
Q Consensus 134 ~lm~dP~l~~ml~~l~--n~~~~~~~~~~l~~lk~dp~~~--~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~ 209 (280)
..-.+|.++..+..=. ...+...+++.+..+..+|+-. ...+-+...+...+ ..+.+..++..........+-+.
T Consensus 27 ~~a~~peLk~~l~~H~~eT~~qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~-~~~~~~~v~Da~li~aaq~vEHy 105 (147)
T cd07909 27 KAATSEELKEAFESHLEETEGQVERLEQIFESLGEKPEGKKCKAMEGLIKEAEELI-EETGDSAVLDAALIAAAQKVEHY 105 (147)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHHHH
Confidence 4556777776664332 3355666778888888877743 33444444443333 23455555433211111111122
Q ss_pred HHHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHH
Q 023608 210 ATTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALA 250 (280)
Q Consensus 210 ~~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~ 250 (280)
++.. -.|.+.+|-..|+.++++.|-.
T Consensus 106 EIA~---------------YgtL~~~A~~lG~~e~a~lL~~ 131 (147)
T cd07909 106 EIAG---------------YGTLRALAKLLGLDDAADLLQE 131 (147)
T ss_pred HHHH---------------HHHHHHHHHHcCCHHHHHHHHH
Confidence 2222 2566778888888888877753
No 137
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=49.31 E-value=28 Score=33.85 Aligned_cols=31 Identities=19% Similarity=0.452 Sum_probs=22.3
Q ss_pred HHhhCChHHHHHHHHHhcCChH-HHHHHHHHH
Q 023608 62 SGLLNDPSIKELAEQIAKDPAF-NSMAEQLQK 92 (280)
Q Consensus 62 ~~~~~~p~~~~~~~~~~~~p~~-~~ma~~~~~ 92 (280)
.-|.++|.|.+|-+-+.+||++ ..+-+||+.
T Consensus 249 ~~Lr~~pqf~~lR~~vq~NP~~L~~lLqql~~ 280 (378)
T TIGR00601 249 EFLRNQPQFQQLRQVVQQNPQLLPPLLQQIGQ 280 (378)
T ss_pred HHhhcCHHHHHHHHHHHHCHHHHHHHHHHHHh
Confidence 5677888888888888888853 346666654
No 138
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=46.28 E-value=23 Score=38.02 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q 023608 83 FNSMAEQLQK 92 (280)
Q Consensus 83 ~~~ma~~~~~ 92 (280)
|.+|.|+||-
T Consensus 596 lq~mmenlq~ 605 (851)
T TIGR02302 596 LQQMMNNLQM 605 (851)
T ss_pred HHHHHHHHhc
Confidence 4555555553
No 139
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.85 E-value=60 Score=31.38 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=9.8
Q ss_pred HHHhhCChHHHHHHHHHhcCC
Q 023608 61 MSGLLNDPSIKELAEQIAKDP 81 (280)
Q Consensus 61 ~~~~~~~p~~~~~~~~~~~~p 81 (280)
..+||+||.+.- -++||
T Consensus 321 i~ki~~dpev~a----Afqdp 337 (377)
T KOG1308|consen 321 ISKILSDPEVAA----AFQDP 337 (377)
T ss_pred HhhhcCchHHHH----hhcCh
Confidence 446777774433 34566
No 140
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.07 E-value=36 Score=32.84 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=4.5
Q ss_pred HHHHhcCC
Q 023608 74 AEQIAKDP 81 (280)
Q Consensus 74 ~~~~~~~p 81 (280)
-.+|+.||
T Consensus 321 i~ki~~dp 328 (377)
T KOG1308|consen 321 ISKILSDP 328 (377)
T ss_pred HhhhcCch
Confidence 34466666
No 141
>COG3685 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.22 E-value=1.7e+02 Score=25.26 Aligned_cols=96 Identities=13% Similarity=0.190 Sum_probs=44.7
Q ss_pred CchhhHhHhhh--cCcChHHHHHHHHHHhhcCCC--hHHHHHHHHcCChhhhhhhcCchhHHHHhHHhhhhccCCHHHHH
Q 023608 138 DPSMSHMMESL--TNPTKKDQIEERMAKIKEDPS--LKPILDEIESGGPSAMMKYWNDKDVLQKLGEAMGLAVGGDATTS 213 (280)
Q Consensus 138 dP~l~~ml~~l--~n~~~~~~~~~~l~~lk~dp~--~~~i~e~i~~~g~~al~~~~~d~~~l~~~~~~~g~~~g~~~~v~ 213 (280)
+|.++..++.= +.-++-.++++++..+...+. ..+..+-|...|...+..+-.+ .++.-....-...+.+.++..
T Consensus 37 ~~~Lka~~E~Hl~ET~~qi~rLe~Vfe~~g~~~~~~~cda~~giiaegq~i~~~~~~~-evlda~L~~aaq~vEhyEIA~ 115 (167)
T COG3685 37 YPELKAAIEKHLEETKGQIERLEQVFERLGKKARRVTCDAMEGLIAEGQEIMEEFKSN-EVLDAGLIGAAQKVEHYEIAC 115 (167)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHH
Confidence 55555444321 233455666777777655433 3344555555555544443333 333211100000111112221
Q ss_pred HHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHH
Q 023608 214 ADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNAL 249 (280)
Q Consensus 214 ~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL 249 (280)
-.|.+-||-..|+.+++++|-
T Consensus 116 ---------------YgtL~a~A~qlG~~~a~~ll~ 136 (167)
T COG3685 116 ---------------YGTLIAAAEQLGDDEAVKLLE 136 (167)
T ss_pred ---------------HHHHHHHHHHhChHHHHHHHH
Confidence 245566777788888887664
No 142
>PRK08939 primosomal protein DnaI; Reviewed
Probab=40.23 E-value=52 Score=30.82 Aligned_cols=49 Identities=16% Similarity=0.430 Sum_probs=36.2
Q ss_pred HHHHHhccChHHHHHHHHHHhhhcCCchhhHhHhhhcCcChHHHHHHHH
Q 023608 113 STMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERM 161 (280)
Q Consensus 113 ~~m~~~m~np~~~~ma~~~~~~lm~dP~l~~ml~~l~n~~~~~~~~~~l 161 (280)
+.|+++|+++.+..-.+++.+.++.||.+...++.-.+.-....++.-+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~f~~~~~~~l~~~~i~~~~ 54 (306)
T PRK08939 6 KTLKKLMKRQDFRKRYEKLKQEVLADPDVQAFLQEHQEELTQEMIDRSL 54 (306)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHhcCHHHHHHHHhChhhCCHHHHHhhH
Confidence 4567788999998888889999999999998887654434444454333
No 143
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=40.09 E-value=10 Score=38.73 Aligned_cols=53 Identities=9% Similarity=-0.015 Sum_probs=41.7
Q ss_pred HHHHHHhCCCCccccCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCC
Q 023608 211 TTSADNAGADEAEEVGNEDESIVHHTASVGDAEGLKNALAAGADKDEEDSEGR 263 (280)
Q Consensus 211 ~v~~Ll~~gadvn~~D~~g~TpLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~ 263 (280)
.+-.|++.+...+..|..+.+|+|++|..|..++.+.++....+++.+-..+.
T Consensus 411 ~v~~lik~~~~~~~~d~f~~~p~~~~~~sgdp~~~~~~~~~~~~~~~~~~~~~ 463 (605)
T KOG3836|consen 411 LVFTLIKKGAHPNDDDKFGFTPLHIPQISGDPRIIQLLLNCKVAISLKSVNGM 463 (605)
T ss_pred ceeeeecccCccchhcccccccccccCCCCCHHHhhhhhhhhhhhhccccccc
Confidence 45567788899999999999999999999999999988876555544443333
No 144
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=39.11 E-value=41 Score=36.04 Aligned_cols=17 Identities=6% Similarity=0.198 Sum_probs=11.8
Q ss_pred CChhHHHHHHHHhccCh
Q 023608 106 FDTTQYYSTMQQVMQNP 122 (280)
Q Consensus 106 ~~~~~~~~~m~~~m~np 122 (280)
-|.+++|..|+++|..=
T Consensus 538 ~dL~~mmd~ie~la~~G 554 (820)
T PF13779_consen 538 QDLQRMMDRIEELARSG 554 (820)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 35667777777777774
No 145
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=37.27 E-value=79 Score=29.00 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=32.9
Q ss_pred HHHHHHHhCCC-Cccc---cCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Q 023608 210 ATTSADNAGAD-EAEE---VGNEDESIVHHTASVGDAEGLKNALAAGAD 254 (280)
Q Consensus 210 ~~v~~Ll~~ga-dvn~---~D~~g~TpLh~Aa~~G~~eivk~LL~~GAd 254 (280)
.+++..|..|. +||. +-..|.|-|--|..+++.+++.+||++||-
T Consensus 231 kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~ 279 (284)
T PF06128_consen 231 KVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI 279 (284)
T ss_pred HHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence 34555555553 4443 356788999999999999999999999884
No 146
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=37.18 E-value=58 Score=23.65 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=11.3
Q ss_pred HHHHHhcCC-----hHHHHHHHHHH
Q 023608 73 LAEQIAKDP-----AFNSMAEQLQK 92 (280)
Q Consensus 73 ~~~~~~~~p-----~~~~ma~~~~~ 92 (280)
+-.+|.+|| .+|.|..|+|.
T Consensus 22 ~~k~l~~NPpine~mir~M~~QMG~ 46 (64)
T PF03672_consen 22 MEKQLKENPPINEKMIRAMMMQMGR 46 (64)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 333455555 46667777665
No 147
>PF09280 XPC-binding: XPC-binding domain; InterPro: IPR015360 Members of this entry adopt a structure consisting of four alpha helices, arranged in an array. They bind specifically and directly to the xeroderma pigmentosum group C protein (XPC) to initiate nucleotide excision repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0043161 proteasomal ubiquitin-dependent protein catabolic process; PDB: 1PVE_A 1QZE_A 1OQY_A 1TP4_A 1X3W_B 3ESW_B 2QSG_X 2QSF_X 1X3Z_B 2QSH_X ....
Probab=32.86 E-value=41 Score=23.89 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=24.7
Q ss_pred CCCCChhcHHHHHHhhCChHHH-HHHHHHh-cCChHHHHHHH
Q 023608 50 GAAPNPFDFSAMSGLLNDPSIK-ELAEQIA-KDPAFNSMAEQ 89 (280)
Q Consensus 50 ~~~~~p~~~~~~~~~~~~p~~~-~~~~~~~-~~p~~~~ma~~ 89 (280)
.|.++|.+-++=+-+-+||.+. .+.++|. +||++.+..++
T Consensus 3 ~Lr~~Pqf~~lR~~vq~NP~lL~~lLqql~~~nP~l~q~I~~ 44 (59)
T PF09280_consen 3 FLRNNPQFQQLRQLVQQNPQLLPPLLQQLGQSNPQLLQLIQQ 44 (59)
T ss_dssp GGTTSHHHHHHHHHHHC-GGGHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHcChHHHHHHHHHHHCHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3566776655555566899643 4555665 59977776665
No 148
>PF14181 YqfQ: YqfQ-like protein
Probab=31.04 E-value=1.1e+02 Score=26.18 Aligned_cols=6 Identities=17% Similarity=0.589 Sum_probs=3.5
Q ss_pred hHHHHH
Q 023608 122 PQFMTM 127 (280)
Q Consensus 122 p~~~~m 127 (280)
|+||.+
T Consensus 86 Pam~ki 91 (161)
T PF14181_consen 86 PAMWKI 91 (161)
T ss_pred HHHHHH
Confidence 666644
No 149
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=29.44 E-value=2.6e+02 Score=21.33 Aligned_cols=15 Identities=13% Similarity=0.350 Sum_probs=7.2
Q ss_pred HhccChHHHHHHHHH
Q 023608 117 QVMQNPQFMTMAERL 131 (280)
Q Consensus 117 ~~m~np~~~~ma~~~ 131 (280)
.|.+||..+.+.+.|
T Consensus 28 ~l~~d~e~~~l~~~f 42 (108)
T PF06133_consen 28 ALEADPEAQKLIEEF 42 (108)
T ss_dssp HHHCSHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHH
Confidence 344555555444444
No 150
>cd00454 Trunc_globin Truncated hemoglobins (trHbs) are a family of oxygen-binding heme proteins found in cyanobacteria, eubacteria, unicellular eukaryotes, and plants. The truncated hemoglobins have a characteristic two-over-two alpha helical folding pattern that is distinct from the three-over-three pattern found in other globins. A subset of these have been demonstrated to form homodimers.
Probab=26.49 E-value=79 Score=24.44 Aligned_cols=28 Identities=11% Similarity=0.279 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHhhhcCCchhhHhHhhh
Q 023608 121 NPQFMTMAERLGNALMQDPSMSHMMESL 148 (280)
Q Consensus 121 np~~~~ma~~~~~~lm~dP~l~~ml~~l 148 (280)
.+.++.+.+.|++.+..||.+..++...
T Consensus 9 ~~~i~~lv~~FY~~i~~dp~i~~~F~~~ 36 (116)
T cd00454 9 EEAIRALVDRFYARVAADPRLGPIFPAD 36 (116)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHhcCCc
Confidence 3788999999999999999999887543
No 151
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A.
Probab=25.41 E-value=1.7e+02 Score=26.42 Aligned_cols=58 Identities=17% Similarity=0.467 Sum_probs=32.8
Q ss_pred CCCCCCCChhHHHHHHHHhccChHHHHHHHHHH--------hhhcCCchhhHhHhhhcCcChHHHHHHHHHHhh
Q 023608 100 EESIPQFDTTQYYSTMQQVMQNPQFMTMAERLG--------NALMQDPSMSHMMESLTNPTKKDQIEERMAKIK 165 (280)
Q Consensus 100 ~~~~p~~~~~~~~~~m~~~m~np~~~~ma~~~~--------~~lm~dP~l~~ml~~l~n~~~~~~~~~~l~~lk 165 (280)
.+|+|-+||.+-|+ ++|+.|....++.- ..+-.+|.+...+..+. .+..+.+.+..|+
T Consensus 197 ~~giP~LDPi~Dmk-----I~d~~~~e~~~k~~~Le~rl~~~~~~~~~~~~~~~~~~~---~k~~l~~~i~~Lk 262 (268)
T PF13234_consen 197 PDGIPLLDPIKDMK-----IKDPEFVELVKKIEALEKRLSSHPLHKCPDFEEHYALYH---EKAELQEEIKALK 262 (268)
T ss_dssp SS--TCHHCHHHH---------HHHHHHHHHHHHHHHHHHHSCHCCSSSHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred CCCCCccChHHhCC-----CCcHHHHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHH---HHHHHHHHHHHHH
Confidence 56799999977766 68999988776652 34455777776666553 2334445554443
No 152
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=24.11 E-value=93 Score=27.44 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=31.6
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 023608 232 IVHHTASVGDAEGLKNALAAGADKDEEDSEGRTALHFACGYGE 274 (280)
Q Consensus 232 pLh~Aa~~G~~eivk~LL~~GAdvn~~D~~G~TPLH~Aa~~G~ 274 (280)
-|.+|+..|-...+...+++|-+++. +.|..|+.|+|
T Consensus 146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynh 182 (192)
T PF03158_consen 146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNH 182 (192)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhH
Confidence 36789999999999999999988873 78888988876
No 153
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=22.25 E-value=1.2e+02 Score=23.56 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHHhhhcCCchhhHhHh
Q 023608 121 NPQFMTMAERLGNALMQDPSMSHMME 146 (280)
Q Consensus 121 np~~~~ma~~~~~~lm~dP~l~~ml~ 146 (280)
.+.++.+++.|++.+..||.+..++.
T Consensus 9 ~~~I~~lv~~fY~rv~~d~~l~~~F~ 34 (120)
T PF01152_consen 9 EEGIRALVDAFYDRVLADPRLKPFFE 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHT-TTTGGGGT
T ss_pred HHHHHHHHHHHHHHHHcCHHHHhhcC
Confidence 36788999999999999999887776
No 154
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=22.17 E-value=1.6e+02 Score=23.15 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=16.5
Q ss_pred hcHHHHHHhhCChHHHHHHHHHh
Q 023608 56 FDFSAMSGLLNDPSIKELAEQIA 78 (280)
Q Consensus 56 ~~~~~~~~~~~~p~~~~~~~~~~ 78 (280)
.+|++=..|++||.+.+-..++.
T Consensus 68 ~If~ah~~~L~D~~l~~~v~~~I 90 (123)
T PF05524_consen 68 AIFEAHLMMLEDPELIDEVEELI 90 (123)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHhHHHHHHHHH
Confidence 57777788999998887666643
No 155
>PF03713 DUF305: Domain of unknown function (DUF305); InterPro: IPR005183 A domain that is found in small family of bacterial secreted proteins with no known function. It ia also found in Paramecium bursaria Chlorella virus 1 (PBCV-1). This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important.; PDB: 2QF9_B 3BT5_A.
Probab=21.10 E-value=2.2e+02 Score=23.32 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=15.4
Q ss_pred CChHHHHHHHHHhc--CChHHHHHHHHHH
Q 023608 66 NDPSIKELAEQIAK--DPAFNSMAEQLQK 92 (280)
Q Consensus 66 ~~p~~~~~~~~~~~--~p~~~~ma~~~~~ 92 (280)
.||.++.+|++|-. .+.+.+|-.-|+.
T Consensus 27 ~~p~vr~lA~~I~~~Q~~ei~~m~~wl~~ 55 (151)
T PF03713_consen 27 TDPEVRALAQQIIAAQQAEIAQMQAWLQS 55 (151)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 47777777777653 4555555555554
No 156
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=21.09 E-value=2e+02 Score=23.24 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=21.5
Q ss_pred CCCCCChhHHHHHHHHhccChHHHHHHHHHH
Q 023608 102 SIPQFDTTQYYSTMQQVMQNPQFMTMAERLG 132 (280)
Q Consensus 102 ~~p~~~~~~~~~~m~~~m~np~~~~ma~~~~ 132 (280)
++|. |+++-...+++.++.|.++.+-++|.
T Consensus 38 ~Lpa-dp~qA~~~~~~rl~s~~~~~~q~~L~ 67 (114)
T PF07511_consen 38 GLPA-DPQQAEAQARQRLQSPDWQQLQQQLA 67 (114)
T ss_pred cCCC-ChHHHHHHHHHHHcCccHHHHHHHHH
Confidence 4453 77777778888888888777666654
No 157
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=20.22 E-value=1.7e+02 Score=31.64 Aligned_cols=14 Identities=0% Similarity=0.190 Sum_probs=7.1
Q ss_pred hhHHHHHHHHhccC
Q 023608 108 TTQYYSTMQQVMQN 121 (280)
Q Consensus 108 ~~~~~~~m~~~m~n 121 (280)
.+++|..|+++|..
T Consensus 570 Lq~Mmd~ieela~~ 583 (851)
T TIGR02302 570 LQNMMDQIENLARS 583 (851)
T ss_pred HHHHHHHHHHHHHc
Confidence 34455555555554
Done!