BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023610
         (280 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P31563|YCF1_OENBE Putative membrane protein ycf1 (Fragment) OS=Oenothera berteriana
           GN=ycf1 PE=3 SV=1
          Length = 1005

 Score = 33.9 bits (76), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 65/137 (47%), Gaps = 24/137 (17%)

Query: 141 FPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQS---IIATKDFI 197
           FPL+ +++ NR+++L F+ +    ++SL S+ G+P    +  + ++  +   +     F+
Sbjct: 120 FPLLTKSMRNRSFQLVFLHSLLFQLFSL-SVLGRPMLTRLSYIYIFRSNNKMLFVLSSFV 178

Query: 198 ---------------YFIYCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFS----RS 238
                           F++ L F+ S   +K+    +L  + +++ +  R +F     R 
Sbjct: 179 GWLIGHILVLKWAGLVFVWLLKFIRSK-TMKYITCNVLIPATKYIIEKWRNSFVAGLIRE 237

Query: 239 ILYRKYLEDACVWVESN 255
           IL  K +E A V ++++
Sbjct: 238 ILAMKQVESALVRIKNS 254


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.131    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,130,402
Number of Sequences: 539616
Number of extensions: 3391758
Number of successful extensions: 15462
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 14728
Number of HSP's gapped (non-prelim): 710
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)