Query 023610
Match_columns 280
No_of_seqs 123 out of 157
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 05:19:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03661 UPF0121: Uncharacteri 100.0 3.8E-34 8.3E-39 261.8 16.5 154 121-280 24-178 (247)
2 KOG4002 Uncharacterized integr 99.8 2.1E-18 4.5E-23 157.5 13.3 145 123-280 40-192 (264)
3 PF12238 MSA-2c: Merozoite sur 77.5 14 0.00031 33.7 8.2 10 53-62 109-118 (205)
4 PF12238 MSA-2c: Merozoite sur 67.8 11 0.00024 34.4 5.1 13 46-59 82-94 (205)
5 KOG1734 Predicted RING-contain 36.1 1.3E+02 0.0028 29.0 6.8 51 126-176 104-167 (328)
6 PHA02624 large T antigen; Prov 32.6 1E+02 0.0023 32.7 6.1 13 23-35 85-97 (647)
7 PF10524 NfI_DNAbd_pre-N: Nucl 31.3 24 0.00052 24.4 0.8 13 47-59 31-43 (44)
8 smart00222 Sec7 Sec7 domain. D 27.2 74 0.0016 27.9 3.5 59 2-60 58-119 (187)
9 PF04173 DoxD: TQO small subun 24.3 1.5E+02 0.0033 26.2 4.8 21 260-280 68-88 (167)
10 PF13124 DUF3963: Protein of u 24.2 1.8E+02 0.0038 19.7 4.0 17 238-254 6-22 (40)
11 KOG3457 Sec61 protein transloc 23.9 61 0.0013 25.8 2.1 30 116-153 55-84 (88)
12 PF07254 DUF1434: Protein of u 23.1 2.5E+02 0.0054 23.8 5.7 54 117-173 8-61 (132)
13 COG4589 Predicted CDP-diglycer 22.0 6.7E+02 0.014 24.1 8.8 88 128-228 40-127 (303)
14 PF08404 Baculo_p74_N: Baculov 21.9 80 0.0017 30.5 2.8 33 32-69 242-274 (301)
15 cd00171 Sec7 Sec7 domain; Doma 21.4 1.1E+02 0.0023 27.0 3.4 59 2-60 57-118 (185)
No 1
>PF03661 UPF0121: Uncharacterised protein family (UPF0121); InterPro: IPR005344 Uncharacterised integral membrane protein family.; GO: 0016021 integral to membrane
Probab=100.00 E-value=3.8e-34 Score=261.80 Aligned_cols=154 Identities=26% Similarity=0.387 Sum_probs=135.8
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHhhHHHHHHHhccCchHHHH
Q 023610 121 RQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFI 200 (280)
Q Consensus 121 ~~~~~f~~~awvlv~a~l~ilPl~p~~~~~r~Yr~a~lgaa~S~gi~lyq~~g~p~~~n~~~~~~~lq~ll~den~qYLl 200 (280)
-++..|..++|+++++++|++|+++.+..+++||.+++|++++|||+|||+++++++ .++|+++++.|||+|||+
T Consensus 24 lq~~~f~~~~~~l~~~~~y~l~~~~~~~~~~~Y~~all~~a~t~~i~l~q~~~~~~~-----~~~~l~~ll~ddn~~YL~ 98 (247)
T PF03661_consen 24 LQFAWFLGHVFTLLCSLLYILPILFFSLAYSAYRKALLGAAATYAIVLYQRLPRFQF-----SRAYLQRLLLDDNFQYLL 98 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHhcccccc-----cHHHHHHHHhcCcHHHHH
Confidence 378899999999999999999987666677799999999999999999999987665 467999999999999999
Q ss_pred HHHHHHhhcccceehhhhHHHHHHHHHHHHHHHhccccHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 023610 201 YCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFSRSILY-RKYLEDACVWVESNSTTLSILTSHAEIGLGFLLIISLL 279 (280)
Q Consensus 201 ~slifl~s~~p~~laLlP~~ifSlfHvatf~r~~l~~~~~~-~k~~~~~~~fV~~n~~~~m~lvA~~EI~l~~~LIl~lf 279 (280)
||++|++++ |++++|+|+++||+||+++|+|+++.+.... ....+.+++||++|++++|+++|++||++++++|+++|
T Consensus 99 ~al~fl~~~-p~~~~llP~~lfSlfHv~ty~~~~l~~~~~~~~~~~~~i~~~v~~~~~~~m~~~A~~Ei~l~~~li~~lf 177 (247)
T PF03661_consen 99 YALIFLFSP-PITLALLPFFLFSLFHVATYLRKLLPPTGPNSSPLARSIISFVKQNNDKIMRLVANIEIFLLPLLIFMLF 177 (247)
T ss_pred HHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999997 8999999999999999999999976542211 12333477899999999999999999999999999887
Q ss_pred C
Q 023610 280 S 280 (280)
Q Consensus 280 s 280 (280)
+
T Consensus 178 ~ 178 (247)
T PF03661_consen 178 F 178 (247)
T ss_pred H
Confidence 4
No 2
>KOG4002 consensus Uncharacterized integral membrane protein [Function unknown]
Probab=99.78 E-value=2.1e-18 Score=157.48 Aligned_cols=145 Identities=19% Similarity=0.305 Sum_probs=114.5
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHhhHHHHHHHhccCchHHHH
Q 023610 123 TIQFSVNAWVFVVAMLAIFPLIPR--NLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFI 200 (280)
Q Consensus 123 ~~~f~~~awvlv~a~l~ilPl~p~--~~~~r~Yr~a~lgaa~S~gi~lyq~~g~p~~~n~~~~~~~lq~ll~den~qYLl 200 (280)
.+++..-.-++-+++.|++|+... ..++|. ++..+.+++++++++...-. + ++.++.+++.||||||++
T Consensus 40 s~L~alr~~~fy~s~~y~~~~~~f~~~~~~~~----~l~na~t~al~l~qr~~~~~-l----~~~f~arli~eds~~Ylv 110 (264)
T KOG4002|consen 40 SVLYALRLSTFYFSVTYLIPLYGFGKIASQKF----FLANAATSALRLHQRLAMFA-L----NKLFLARLIIEDSVHYLV 110 (264)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH----HHHHhHhhhhhHHHHHhHHH-H----HHHHHHHHHHccchHHHH
Confidence 445555556666778888887522 234455 88899999999999985332 2 556899999999999999
Q ss_pred HHHHHHhhcccceehhhhHHHHHHHHHHHHHHHhcc---c--cHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHH
Q 023610 201 YCLSFVTSHLCLKFALIPILCRSVEHVAKFLRRNFS---R--SILYRKYLEDACVWVESNS-TTLSILTSHAEIGLGFLL 274 (280)
Q Consensus 201 ~slifl~s~~p~~laLlP~~ifSlfHvatf~r~~l~---~--~~~~~k~~~~~~~fV~~n~-~~~m~lvA~~EI~l~~~L 274 (280)
|+++|++.+ |+.+.|+|+++|+++|+++|+++.+. . ++..+..+++ |+.+++ +++|.++|+.||++++++
T Consensus 111 ~slifl~~~-p~~~sL~P~l~ya~lH~~ty~~kvL~~~~~ns~~~~~s~i~~---f~~q~~~q~~l~~va~~eifll~~l 186 (264)
T KOG4002|consen 111 YSLIFLFLR-PFSFSLLPVLIYAVLHASTYLNKVLLVIGQNSSGFFLSMISK---FEAQYTLQNALKLVAFNEIFLLPRL 186 (264)
T ss_pred HHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 999999998 99999999999999999999998654 2 3444444444 455554 999999999999999999
Q ss_pred HHHhcC
Q 023610 275 IISLLS 280 (280)
Q Consensus 275 Il~lfs 280 (280)
+.++|+
T Consensus 187 ~~~iF~ 192 (264)
T KOG4002|consen 187 FFLIFS 192 (264)
T ss_pred HHHHHh
Confidence 999874
No 3
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=77.47 E-value=14 Score=33.65 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=4.7
Q ss_pred HHHhhhcCCC
Q 023610 53 KFYQRYIDPD 62 (280)
Q Consensus 53 k~y~~~iDp~ 62 (280)
||++.++|.+
T Consensus 109 ~~ck~Fl~~~ 118 (205)
T PF12238_consen 109 KFCKDFLDSE 118 (205)
T ss_pred HHHHHHhccc
Confidence 4445555443
No 4
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=67.83 E-value=11 Score=34.37 Aligned_cols=13 Identities=23% Similarity=0.506 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhc
Q 023610 46 VVDHYKRKFYQRYI 59 (280)
Q Consensus 46 ~~~k~k~k~y~~~i 59 (280)
.++|. +||||+||
T Consensus 82 ~~~~~-~~YyKkhI 94 (205)
T PF12238_consen 82 GREKM-TKYYKKHI 94 (205)
T ss_pred cHHHH-HHHHHHhc
Confidence 34443 46888887
No 5
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.08 E-value=1.3e+02 Score=28.98 Aligned_cols=51 Identities=18% Similarity=0.402 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHh-------cCC---CcchhHH---HHHHHHHHHHHHHHHHHHHHhCCCC
Q 023610 126 FSVNAWVFVVAMLAIF-------PLI---PRNLSNR---AYRLSFMGTACSSIYSLYSLYGKPR 176 (280)
Q Consensus 126 f~~~awvlv~a~l~il-------Pl~---p~~~~~r---~Yr~a~lgaa~S~gi~lyq~~g~p~ 176 (280)
+.+..|++.+++.+++ |+. |+..|.. .|++++++.++.|.+..+...|..-
T Consensus 104 rfl~~WlmF~~~tafi~~ka~rkp~~g~tpRlVYkwFl~lyklSy~~g~vGyl~im~~~~g~n~ 167 (328)
T KOG1734|consen 104 RFLFCWLMFCGFTAFITLKALRKPISGDTPRLVYKWFLFLYKLSYLLGVVGYLAIMFAQFGLNF 167 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceee
Confidence 4455788888777764 443 6644433 7889999999999999999998433
No 6
>PHA02624 large T antigen; Provisional
Probab=32.56 E-value=1e+02 Score=32.69 Aligned_cols=13 Identities=23% Similarity=1.048 Sum_probs=9.2
Q ss_pred CCcchHHHhhhcC
Q 023610 23 NDPRWADYWSNIL 35 (280)
Q Consensus 23 ~~~~W~~Y~~nl~ 35 (280)
++..|++||+-..
T Consensus 85 ~~~~w~~ww~~f~ 97 (647)
T PHA02624 85 GTPEWEQWWEEFN 97 (647)
T ss_pred ccccHHHHHHHhh
Confidence 5678888876543
No 7
>PF10524 NfI_DNAbd_pre-N: Nuclear factor I protein pre-N-terminus; InterPro: IPR019548 Nuclear factor I (NF-I) or CCAAT box-binding transcription factor (CTF) [, ] (also known as TGGCA-binding proteins) are a family of vertebrate nuclear proteins which recognise and bind, as dimers, the palindromic DNA sequence 5'-TGGCANNNTGCCA-3'. CTF/NF-I binding sites are present in viral and cellular promoters and in the origin of DNA replication of Human adenovirus 2 (HAdV-2). The CTF/NF-I proteins were first identified as nuclear factor I, a collection of proteins that activate the replication of several Adenovirus serotypes (together with NF-II and NF-III) []. The family of proteins was also identified as the CTF transcription factors, before the NFI and CTF families were found to be identical []. The CTF/NF-I proteins are individually capable of activating transcription and DNA replication. In a given species, there are a large number of different CTF/NF-I proteins, generated both by alternative splicing and by the occurrence of four different genes. CTF/NF-1 proteins contain 400 to 600 amino acids. The N-terminal 200 amino-acid sequence, almost perfectly conserved in all species and genes sequenced, mediates site-specific DNA recognition, protein dimerisation and Adenovirus DNA replication. The C-terminal 100 amino acids contain the transcriptional activation domain. This activation domain is the target of gene expression regulatory pathways elicited by growth factors and it interacts with basal transcription factors and with histone H3 []. This entry represents the N terminus, of which 200 residues contain the DNA-binding and dimerisation domain, but also has an 8-47 residue highly conserved region 5' of this, whose function is not known. Deletion of the N-terminal 200 amino acids removes the DNA-binding activity, dimerisation-ability and the stimulation of adenovirus DNA replication [].
Probab=31.29 E-value=24 Score=24.44 Aligned_cols=13 Identities=31% Similarity=0.457 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhc
Q 023610 47 VDHYKRKFYQRYI 59 (280)
Q Consensus 47 ~~k~k~k~y~~~i 59 (280)
+.-=||||||+|.
T Consensus 31 LQA~KRk~~Kkhe 43 (44)
T PF10524_consen 31 LQAAKRKHYKKHE 43 (44)
T ss_pred HHHHHHHHHHhcc
Confidence 3445899999873
No 8
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=27.23 E-value=74 Score=27.92 Aligned_cols=59 Identities=10% Similarity=0.290 Sum_probs=45.0
Q ss_pred CCcchhhHHHHHHHHhhccCCC---CcchHHHhhhcCCCCCCCCChhHHHHHHHHHHhhhcC
Q 023610 2 GEEREDSQKIKRIAAAAYDYDN---DPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~d~~~---~~~W~~Y~~nl~~pp~~~~~~~~~~k~k~k~y~~~iD 60 (280)
|+..+.++++=++=.+.|||.+ |..=+.+++.+.+|.....-+.+++.|=++||+.|-+
T Consensus 58 ~~~~~~~~~vL~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~ 119 (187)
T smart00222 58 GEHDEFNRLVLHAFVDLFDFSAKDLDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPS 119 (187)
T ss_pred cCCChHHHHHHHHHHHhcCcCCCcHHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCC
Confidence 3445566777677778999988 6788899999999976334566788888999998744
No 9
>PF04173 DoxD: TQO small subunit DoxD; InterPro: IPR007301 P97207 from SWISSPROT is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens, with calculated molecular mass of 20.4 kDa []. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon A. ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=24.26 E-value=1.5e+02 Score=26.20 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 023610 260 SILTSHAEIGLGFLLIISLLS 280 (280)
Q Consensus 260 m~lvA~~EI~l~~~LIl~lfs 280 (280)
|-+.+.+|+..++.+++++||
T Consensus 68 lv~ft~vE~~~Gl~LilGL~T 88 (167)
T PF04173_consen 68 LVVFTIVEIIFGLLLILGLFT 88 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566699999999999986
No 10
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=24.15 E-value=1.8e+02 Score=19.69 Aligned_cols=17 Identities=18% Similarity=0.706 Sum_probs=13.2
Q ss_pred cHHHHHHHHHHHHHHHh
Q 023610 238 SILYRKYLEDACVWVES 254 (280)
Q Consensus 238 ~~~~~k~~~~~~~fV~~ 254 (280)
..+..+|.+++++|++.
T Consensus 6 ~~fieryfddiqkwirn 22 (40)
T PF13124_consen 6 TAFIERYFDDIQKWIRN 22 (40)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677889998888864
No 11
>KOG3457 consensus Sec61 protein translocation complex, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=23.92 E-value=61 Score=25.78 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=15.5
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHhcCCCcchhHHHH
Q 023610 116 SVRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAY 153 (280)
Q Consensus 116 ~~r~~~~~~~f~~~awvlv~a~l~ilPl~p~~~~~r~Y 153 (280)
-+++|+-- |||+++++|.-.+-.|+.-|.|
T Consensus 55 GlKV~Pvv--------VLvmSvgFIasV~~LHi~gK~~ 84 (88)
T KOG3457|consen 55 GLKVDPVV--------VLVMSVGFIASVFALHIWGKLT 84 (88)
T ss_pred CceeCCee--------ehhhhHHHHHHHHHHHHHHHHh
Confidence 44566654 5555666654433345555544
No 12
>PF07254 DUF1434: Protein of unknown function (DUF1434); InterPro: IPR009883 This family consists of several hypothetical bacterial proteins of around 135 residues in length. Members of this family all appear to be Enterobacterial proteins. The function of this family is unknown.
Probab=23.06 E-value=2.5e+02 Score=23.82 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=34.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhC
Q 023610 117 VRWDRQTIQFSVNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYG 173 (280)
Q Consensus 117 ~r~~~~~~~f~~~awvlv~a~l~ilPl~p~~~~~r~Yr~a~lgaa~S~gi~lyq~~g 173 (280)
+|.+.++..||..+++++++++.+.|. | ..|....+.++.-++...++=.++..
T Consensus 8 lr~S~~~q~~Sl~~~g~v~~~~Ll~PW-P--~~~~~~wl~Ll~lvvfe~irsqrri~ 61 (132)
T PF07254_consen 8 LRVSWRTQLLSLLVHGAVVLLILLAPW-P--ESYTPLWLLLLSLVVFECIRSQRRIR 61 (132)
T ss_pred ceecHHHHHHHHHHHHHHHHHHHHhcc-C--cchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 456778999999999987665444453 2 23444455566666666666666664
No 13
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=22.01 E-value=6.7e+02 Score=24.09 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhHhhHHHHHHHhccCchHHHHHHHHHHh
Q 023610 128 VNAWVFVVAMLAIFPLIPRNLSNRAYRLSFMGTACSSIYSLYSLYGKPRAWNMQALQVYFQSIIATKDFIYFIYCLSFVT 207 (280)
Q Consensus 128 ~~awvlv~a~l~ilPl~p~~~~~r~Yr~a~lgaa~S~gi~lyq~~g~p~~~n~~~~~~~lq~ll~den~qYLl~slifl~ 207 (280)
+++|-..++++.+.-. -.|++.+.|.|-+--++++=|-+.---+..+....- |+= ..--.||++.++-|.-
T Consensus 40 I~aWW~mv~i~~~~~~-----l~~~~~l~lF~~iSflalrEfltl~ptr~~d~~~l~-~~Y---~~lplqy~~i~i~wy~ 110 (303)
T COG4589 40 IRAWWVMVIIFSLVIS-----LPRWMTLTLFGLISFLALREFLTLIPTRRPDHLALV-WFY---WVLPLQYLLIGIDWYE 110 (303)
T ss_pred HHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHhhcccccCCccchh-hhh---hhhhHhHHHhhhHHHH
Confidence 5677665555553221 137888999998877888877776422221211111 221 1346799999888872
Q ss_pred hcccceehhhhHHHHHHHHHH
Q 023610 208 SHLCLKFALIPILCRSVEHVA 228 (280)
Q Consensus 208 s~~p~~laLlP~~ifSlfHva 228 (280)
+...++|+-.|-++-..
T Consensus 111 ----mf~ifipvY~fL~Lp~l 127 (303)
T COG4589 111 ----MFIIFIPVYGFLILPIL 127 (303)
T ss_pred ----HHHHHHHHHHHHHHHHH
Confidence 33556666666554443
No 14
>PF08404 Baculo_p74_N: Baculoviridae P74 N-terminal; InterPro: IPR013613 This domain is found at the N terminus of P74 occlusion-derived virus (ODV) envelope proteins which are required for oral infectivity. The envelope proteins are found in baculoviruses which are insect pathogens. The C terminus of P74 is anchored to the membrane whereas the N terminus is exposed to the virion surface. Furthermore P74 is unusual for a virus envelope protein as it lacks an N-terminal localisation signal sequence []. Also see IPR007663 from INTERPRO.
Probab=21.93 E-value=80 Score=30.48 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=22.6
Q ss_pred hhcCCCCCCCCChhHHHHHHHHHHhhhcCCCCccccCC
Q 023610 32 SNILIPPHMAARSDVVDHYKRKFYQRYIDPDLVVESMS 69 (280)
Q Consensus 32 ~nl~~pp~~~~~~~~~~k~k~k~y~~~iDp~~~v~~~s 69 (280)
+++++||+..+...+++.|+ +++||++|++.+.
T Consensus 242 S~~LP~~p~~d~~~~L~~W~-----n~rD~~~d~~~E~ 274 (301)
T PF08404_consen 242 SPILPPPPEVDSEKTLEEWR-----NVRDPTFDLDFEV 274 (301)
T ss_pred CccCCCCCCCchHHHHHHHH-----HhcCCcCCCChhh
Confidence 35676766555555665554 5899999987665
No 15
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=21.42 E-value=1.1e+02 Score=26.98 Aligned_cols=59 Identities=10% Similarity=0.277 Sum_probs=42.7
Q ss_pred CCcchhhHHHHHHHHhhccCCC---CcchHHHhhhcCCCCCCCCChhHHHHHHHHHHhhhcC
Q 023610 2 GEEREDSQKIKRIAAAAYDYDN---DPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~d~~~---~~~W~~Y~~nl~~pp~~~~~~~~~~k~k~k~y~~~iD 60 (280)
|+..|..+++=++=...|||.+ |.-=..++..+.+|-..---+-+++.|=++||+.|-|
T Consensus 57 ~~~~~~~~~vL~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~ 118 (185)
T cd00171 57 GENNEFNSLVLHEFVDLFDFSGLRLDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPG 118 (185)
T ss_pred cCCchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCC
Confidence 3444556666666778899988 6788899999999965333455677888888888743
Done!