Query 023610
Match_columns 280
No_of_seqs 123 out of 157
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 09:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km1_A Protein DRE2; yeast, an 32.8 6.2 0.00021 32.5 -1.0 24 34-57 12-35 (136)
2 4dgw_B PRE-mRNA-splicing facto 22.2 39 0.0013 28.2 2.0 19 5-23 96-114 (152)
3 2khf_A PLNJ; anti-microbial, b 21.4 27 0.00094 20.4 0.6 9 26-34 2-10 (26)
4 3dnx_A Uncharacterized protein 16.7 20 0.00068 30.1 -1.0 14 19-32 64-77 (153)
5 3rm1_A Protein S100-B; alpha-h 14.9 1.7E+02 0.0057 20.7 3.8 31 1-33 1-39 (92)
6 2fly_A Proadrenomedullin N-20 11.5 82 0.0028 18.8 0.9 13 43-55 2-14 (26)
7 2r09_A Cytohesin-3; autoinhibi 10.1 2E+02 0.0067 26.2 3.5 58 3-60 70-130 (347)
8 1r8s_E ARNO; protein transport 9.9 2.2E+02 0.0074 24.5 3.5 57 2-58 67-126 (203)
9 3ltl_A Brefeldin A-inhibited g 9.9 1.9E+02 0.0067 25.0 3.2 57 2-58 73-132 (211)
10 2lmt_A Calmodulin-related prot 9.8 4.9E+02 0.017 19.3 5.3 48 1-52 1-53 (148)
No 1
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}
Probab=32.85 E-value=6.2 Score=32.51 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.7
Q ss_pred cCCCCCCCCChhHHHHHHHHHHhh
Q 023610 34 ILIPPHMAARSDVVDHYKRKFYQR 57 (280)
Q Consensus 34 l~~pp~~~~~~~~~~k~k~k~y~~ 57 (280)
|++||.++++++.++..|.+++++
T Consensus 12 LL~~Psv~t~pe~le~~k~~~~~~ 35 (136)
T 2km1_A 12 LLIHPAVTTTPELVENTKAQAASK 35 (136)
T ss_dssp EEECHHHHTSHHHHHHHHHHHHHT
T ss_pred EecCCcccCCHHHHHHHHHhhhcc
Confidence 457999999999999999999995
No 2
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=22.20 E-value=39 Score=28.17 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=15.0
Q ss_pred chhhHHHHHHHHhhccCCC
Q 023610 5 REDSQKIKRIAAAAYDYDN 23 (280)
Q Consensus 5 ~~~~~~~~~~a~~~~d~~~ 23 (280)
+|++++.+|++++++||.+
T Consensus 96 ~e~~~e~er~~fa~IDW~d 114 (152)
T 4dgw_B 96 HDKLVELCKIQFAAIPWDK 114 (152)
T ss_dssp HHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHhcCCccc
Confidence 3456666789999999986
No 3
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=21.39 E-value=27 Score=20.40 Aligned_cols=9 Identities=33% Similarity=1.501 Sum_probs=7.0
Q ss_pred chHHHhhhc
Q 023610 26 RWADYWSNI 34 (280)
Q Consensus 26 ~W~~Y~~nl 34 (280)
.|+.+|++|
T Consensus 2 awknfwssl 10 (26)
T 2khf_A 2 AWKNFWSSL 10 (26)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 488888875
No 4
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=16.70 E-value=20 Score=30.12 Aligned_cols=14 Identities=29% Similarity=0.888 Sum_probs=11.9
Q ss_pred ccCCCCcchHHHhh
Q 023610 19 YDYDNDPRWADYWS 32 (280)
Q Consensus 19 ~d~~~~~~W~~Y~~ 32 (280)
=||-.|.+|++|++
T Consensus 64 aDFr~D~KW~~Y~~ 77 (153)
T 3dnx_A 64 ADFQADAKWQGYLE 77 (153)
T ss_dssp HHHHHTTTGGGGGG
T ss_pred HHhhcccchHHHHh
Confidence 37888999999976
No 5
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=14.87 E-value=1.7e+02 Score=20.70 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=20.7
Q ss_pred CCCcchhhHHHHHHHHhhccCCCCc--------chHHHhhh
Q 023610 1 MGEEREDSQKIKRIAAAAYDYDNDP--------RWADYWSN 33 (280)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~d~~~~~--------~W~~Y~~n 33 (280)
|.+.+.+-+++ +++|..|| .+|- ..+..+.+
T Consensus 1 ~~~le~~~~~l-~~~F~~~D-~~dG~~g~Is~~EL~~~l~~ 39 (92)
T 3rm1_A 1 MSELEKAVVAL-IDVFHQYS-GREGDKHKLKKSELKELINN 39 (92)
T ss_dssp CCHHHHHHHHH-HHHHHHHH-TSSSSTTSBCHHHHHHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHc-cCCCCcCeECHHHHHHHHHH
Confidence 34444555555 45999999 7643 67888877
No 6
>2fly_A Proadrenomedullin N-20 terminal peptide; alpha helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=11.53 E-value=82 Score=18.75 Aligned_cols=13 Identities=31% Similarity=0.708 Sum_probs=9.8
Q ss_pred ChhHHHHHHHHHH
Q 023610 43 RSDVVDHYKRKFY 55 (280)
Q Consensus 43 ~~~~~~k~k~k~y 55 (280)
|.|+...|+|||=
T Consensus 2 rld~~sefrKKwn 14 (26)
T 2fly_A 2 RLDVASEFRKKWN 14 (26)
T ss_pred CccccHHHHHHHH
Confidence 5677788888884
No 7
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=10.08 E-value=2e+02 Score=26.17 Aligned_cols=58 Identities=5% Similarity=0.115 Sum_probs=42.0
Q ss_pred CcchhhHHHHHHHHhhccCCCCc---chHHHhhhcCCCCCCCCChhHHHHHHHHHHhhhcC
Q 023610 3 EEREDSQKIKRIAAAAYDYDNDP---RWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60 (280)
Q Consensus 3 ~~~~~~~~~~~~a~~~~d~~~~~---~W~~Y~~nl~~pp~~~~~~~~~~k~k~k~y~~~iD 60 (280)
+.++.++++=++=.+.|||.+.+ -=..+++.+.+|--..--+-+|++|=++||+.|-|
T Consensus 70 ~~~~~~~~vl~~~~~~~~f~~~~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~ 130 (347)
T 2r09_A 70 ERDDFNIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPG 130 (347)
T ss_dssp CCSHHHHHHHHHHHHTSCCTTCCHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCCchHHHHHHHHHHhcCcCCCCHHHHHHHHHHhCcCCCchHHHHHHHHHHHHHHHHhCCc
Confidence 33444566666677899999865 66789999999855333556788899999998744
No 8
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=9.92 E-value=2.2e+02 Score=24.48 Aligned_cols=57 Identities=7% Similarity=0.173 Sum_probs=39.4
Q ss_pred CCcchhhHHHHHHHHhhccCCCC---cchHHHhhhcCCCCCCCCChhHHHHHHHHHHhhh
Q 023610 2 GEEREDSQKIKRIAAAAYDYDND---PRWADYWSNILIPPHMAARSDVVDHYKRKFYQRY 58 (280)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~d~~~~---~~W~~Y~~nl~~pp~~~~~~~~~~k~k~k~y~~~ 58 (280)
|+.++..+++=++=.+.|||.+- .-=+.++..+.+|--..-.+-+|++|=++|++.|
T Consensus 67 g~~~~~n~~vl~~y~~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~N 126 (203)
T 1r8s_E 67 GEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCN 126 (203)
T ss_dssp TCCSHHHHHHHHHHHHTCCCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred hccchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhC
Confidence 44444456666667788999875 5677899999988542224556778888888765
No 9
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=9.89 E-value=1.9e+02 Score=24.99 Aligned_cols=57 Identities=5% Similarity=0.201 Sum_probs=37.8
Q ss_pred CCcchhhHHHHHHHHhhccCCC---CcchHHHhhhcCCCCCCCCChhHHHHHHHHHHhhh
Q 023610 2 GEEREDSQKIKRIAAAAYDYDN---DPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRY 58 (280)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~d~~~---~~~W~~Y~~nl~~pp~~~~~~~~~~k~k~k~y~~~ 58 (280)
|+.++-.+++=++=.+.|||.+ |.-=+.++..+.+|--.---+-++++|=++||+.|
T Consensus 73 g~~~~fn~~vL~~yv~~fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~N 132 (211)
T 3ltl_A 73 GDNDKFNKEVMYAYVDQHDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECN 132 (211)
T ss_dssp TCCSHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTC
T ss_pred hccchhHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCcCCCchhHHHHHHHHHHHHHHHhC
Confidence 3434445666666778899987 45778899999988542224445667777777654
No 10
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=9.79 E-value=4.9e+02 Score=19.30 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=32.4
Q ss_pred CCCcchhhHHHHHHHHhhccCCCC-----cchHHHhhhcCCCCCCCCChhHHHHHHH
Q 023610 1 MGEEREDSQKIKRIAAAAYDYDND-----PRWADYWSNILIPPHMAARSDVVDHYKR 52 (280)
Q Consensus 1 ~~~~~~~~~~~~~~a~~~~d~~~~-----~~W~~Y~~nl~~pp~~~~~~~~~~k~k~ 52 (280)
|.+.++++-+.=+++|..||=++| ..++..+..+-..|. ...+..+-+
T Consensus 1 Ms~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~----~~~~~~~~~ 53 (148)
T 2lmt_A 1 MSELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPT----EAELQDLIA 53 (148)
T ss_dssp CCSCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCC----HHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCch----HHHHHHHHH
Confidence 666665543333579999999887 678888888876665 455544443
Done!