Query 023610
Match_columns 280
No_of_seqs 123 out of 157
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 09:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023610.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023610hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r8se_ a.118.3.1 (E:) Exchang 25.6 26 0.0019 27.7 3.7 59 2-60 55-116 (187)
2 d1xsza1 a.118.3.1 (A:1-197) Ra 22.6 32 0.0023 27.5 3.7 59 2-60 63-124 (197)
3 d1qled_ f.23.8.1 (D:) Bacteria 11.7 1.3E+02 0.0095 18.4 3.7 27 253-279 14-40 (43)
4 d1m56d_ f.23.8.1 (D:) Bacteria 11.6 1.3E+02 0.0097 18.2 3.7 27 253-279 13-39 (42)
5 d1fw4a_ a.39.1.5 (A:) Calmodul 11.3 47 0.0034 20.8 1.6 40 8-52 2-46 (65)
6 d2hbaa1 d.100.1.1 (A:1-52) Rib 11.2 68 0.005 20.3 2.3 25 29-53 24-50 (52)
7 d1pjza_ c.66.1.36 (A:) Thiopur 10.8 42 0.0031 24.3 1.3 18 23-40 5-22 (201)
8 d2j01i2 d.100.1.1 (I:1-55) Rib 10.4 88 0.0064 20.0 2.7 25 29-53 24-50 (55)
9 d2hf5a1 a.39.1.5 (A:81-113) Tr 9.3 60 0.0044 18.6 1.3 16 9-25 3-18 (33)
10 d1oqpa_ a.39.1.5 (A:) Caltract 9.2 2.2E+02 0.016 17.7 5.0 35 4-39 4-43 (77)
No 1
>d1r8se_ a.118.3.1 (E:) Exchange factor ARNO {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.61 E-value=26 Score=27.70 Aligned_cols=59 Identities=7% Similarity=0.160 Sum_probs=44.1
Q ss_pred CCcchhhHHHHHHHHhhccCCC---CcchHHHhhhcCCCCCCCCChhHHHHHHHHHHhhhcC
Q 023610 2 GEEREDSQKIKRIAAAAYDYDN---DPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~d~~~---~~~W~~Y~~nl~~pp~~~~~~~~~~k~k~k~y~~~iD 60 (280)
|+..+..+++=++=.+.|||.+ |..=..+++.+.+|-...--+-+++.|=++||+.|-+
T Consensus 55 g~~~~~~~~vl~~y~~~f~f~~~~i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~ 116 (187)
T d1r8se_ 55 GEREELNLAVLHAFVDLHEFTDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPG 116 (187)
T ss_dssp TCCSHHHHHHHHHHHHTCCCTTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccccHHHHHHHHHHHHhcCcCCCcHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 4455567777777888999998 4578899999999855222456778889999988743
No 2
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=22.58 E-value=32 Score=27.45 Aligned_cols=59 Identities=8% Similarity=0.277 Sum_probs=42.6
Q ss_pred CCcchhhHHHHHHHHhhccCCC---CcchHHHhhhcCCCCCCCCChhHHHHHHHHHHhhhcC
Q 023610 2 GEEREDSQKIKRIAAAAYDYDN---DPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYID 60 (280)
Q Consensus 2 ~~~~~~~~~~~~~a~~~~d~~~---~~~W~~Y~~nl~~pp~~~~~~~~~~k~k~k~y~~~iD 60 (280)
|+.++..+++=++=.+.|||.+ |..=+.++..+.+|--..--+-+++.|=++||+.|-|
T Consensus 63 g~~~~~n~~vl~~y~~~f~f~~~~id~ALR~~l~~f~LpgE~Q~IdRile~Fa~~y~~~Np~ 124 (197)
T d1xsza1 63 SSPEAENQQVLKAFTSQMNFNGQSFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPD 124 (197)
T ss_dssp TCCSHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCchHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHhCcC
Confidence 3444556777777788999998 5688999999998855222345677888888888643
No 3
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=11.69 E-value=1.3e+02 Score=18.37 Aligned_cols=27 Identities=11% Similarity=-0.039 Sum_probs=21.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 023610 253 ESNSTTLSILTSHAEIGLGFLLIISLL 279 (280)
Q Consensus 253 ~~n~~~~m~lvA~~EI~l~~~LIl~lf 279 (280)
+...+..|+++.-.-|.+.+.||++++
T Consensus 14 EkTF~gFi~~~t~~~i~~i~~liflAi 40 (43)
T d1qled_ 14 QATFAGFIKGATWVSILSIAVLVFLAL 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888988888888888888764
No 4
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=11.64 E-value=1.3e+02 Score=18.24 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=20.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 023610 253 ESNSTTLSILTSHAEIGLGFLLIISLL 279 (280)
Q Consensus 253 ~~n~~~~m~lvA~~EI~l~~~LIl~lf 279 (280)
|...+..|+++.-.-|.+...||+.++
T Consensus 13 EKTF~gFik~~t~~~i~~i~~liflAi 39 (42)
T d1m56d_ 13 EKTFAGFVRMVTWAAVVIVAALIFLAL 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888764
No 5
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.29 E-value=47 Score=20.80 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhccCCCCc-----chHHHhhhcCCCCCCCCChhHHHHHHH
Q 023610 8 SQKIKRIAAAAYDYDNDP-----RWADYWSNILIPPHMAARSDVVDHYKR 52 (280)
Q Consensus 8 ~~~~~~~a~~~~d~~~~~-----~W~~Y~~nl~~pp~~~~~~~~~~k~k~ 52 (280)
++++ +.||..||-+++- .-+..+..+-.++. ++.+.++-+
T Consensus 2 eeel-~~aF~~fD~d~~G~I~~~el~~~l~~lg~~~~----~~e~~~l~~ 46 (65)
T d1fw4a_ 2 EEEI-REAFRVFDKDGNGYISAAELRHVMTNLGEKLT----DEEVDEMIR 46 (65)
T ss_dssp CHHH-HHHHHHHCTTCSSEECHHHHHHHHHHTTCCCC----HHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCC----HHHHHHHHH
Confidence 3556 4599999998874 45667777765555 566655544
No 6
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=11.23 E-value=68 Score=20.27 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.4
Q ss_pred HHhhhcCCCCCCC--CChhHHHHHHHH
Q 023610 29 DYWSNILIPPHMA--ARSDVVDHYKRK 53 (280)
Q Consensus 29 ~Y~~nl~~pp~~~--~~~~~~~k~k~k 53 (280)
-|..|-++|..++ .+++.+.+++++
T Consensus 24 GyarN~LiP~g~A~~at~~n~~~~~~~ 50 (52)
T d2hbaa1 24 GYANNFLFKQGLAIEATPANLKALEAQ 50 (52)
T ss_dssp HHHHHTTTTTTSEEECCHHHHHHHHHH
T ss_pred cchhHhhccCCchhhCCHHHHHHHHHh
Confidence 5889999999988 488888888763
No 7
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}
Probab=10.79 E-value=42 Score=24.27 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=15.3
Q ss_pred CCcchHHHhhhcCCCCCC
Q 023610 23 NDPRWADYWSNILIPPHM 40 (280)
Q Consensus 23 ~~~~W~~Y~~nl~~pp~~ 40 (280)
-++.|++||+.|-+||+.
T Consensus 5 ~~~~~~~~~~~l~~~~~~ 22 (201)
T d1pjza_ 5 VNKDLQQYWSSLNVVPGA 22 (201)
T ss_dssp STHHHHHHHHHHCCCTTC
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 468899999999988873
No 8
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=10.44 E-value=88 Score=19.95 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.0
Q ss_pred HHhhhcCCCCCCC--CChhHHHHHHHH
Q 023610 29 DYWSNILIPPHMA--ARSDVVDHYKRK 53 (280)
Q Consensus 29 ~Y~~nl~~pp~~~--~~~~~~~k~k~k 53 (280)
-|..|-++|..++ .+++.+.+++.|
T Consensus 24 GyaRN~LiP~~~A~~at~~nl~~~~~~ 50 (55)
T d2j01i2 24 GYARNYLLPRGLAVLATESNLKALEAR 50 (55)
T ss_dssp HHHHHTTTTTTSEEECCHHHHHHHHHH
T ss_pred hhHHHHhcccCchhhcCHHHHHHHHHH
Confidence 5889999999887 478888887653
No 9
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=9.25 E-value=60 Score=18.65 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=12.0
Q ss_pred HHHHHHHHhhccCCCCc
Q 023610 9 QKIKRIAAAAYDYDNDP 25 (280)
Q Consensus 9 ~~~~~~a~~~~d~~~~~ 25 (280)
+++ ++||+-||=++|-
T Consensus 3 eel-~eAF~~FDkDg~G 18 (33)
T d2hf5a1 3 EEI-REAFRVFDKDGNG 18 (33)
T ss_dssp HHH-HHHHHHHSSSCCS
T ss_pred HHH-HHHHHHhCCCCCC
Confidence 345 4599999988874
No 10
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=9.20 E-value=2.2e+02 Score=17.72 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=26.2
Q ss_pred cchhhHHHHHHHHhhccCCCC-----cchHHHhhhcCCCCC
Q 023610 4 EREDSQKIKRIAAAAYDYDND-----PRWADYWSNILIPPH 39 (280)
Q Consensus 4 ~~~~~~~~~~~a~~~~d~~~~-----~~W~~Y~~nl~~pp~ 39 (280)
+++.++++ ++||+.||=++| ..++..+.++-.+..
T Consensus 4 e~d~~e~l-~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~ 43 (77)
T d1oqpa_ 4 ERDSREEI-LKAFRLFDDDNSGTITIKDLRRVAKELGENLT 43 (77)
T ss_dssp TSSHHHHH-HHHHHHHCTTCSSSEEHHHHHHHHHHHTCCCC
T ss_pred CccHHHHH-HHHHHHHcCCCCCEechHHHHHHHHHhCCCCC
Confidence 44455666 469999998887 578999999877655
Done!