BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023614
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FMS6|CAF1K_ARATH Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis
thaliana GN=CAF1-11 PE=2 SV=1
Length = 278
Score = 318 bits (814), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 161/268 (60%), Positives = 207/268 (77%), Gaps = 4/268 (1%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNI-RHRDPAANYNGLKA 72
I+IR+V+ +NL SEF+ IR +++ YP ISMDTEFPGV+ + D ++ R +P YN LK+
Sbjct: 12 IVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYNLLKS 71
Query: 73 NVDLLNLIQIGLTLSDEEGNLPDLG-SGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG 131
NVD L+LIQ+GLTLSD +GNLPDLG + YIWEFNF+DFD+ R HA DS+ELL+R G
Sbjct: 72 NVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHG 131
Query: 132 IDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSE 191
IDFE+NR G++S RFAEL+MSSGL+ N+ V+WVTFHSAYDFGYLVK LT+R LP L E
Sbjct: 132 IDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPVALRE 191
Query: 192 FVTRVGVFFGEKVYDVKHLIRFCTC-LYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHA 250
F+ + FFG++VYDVKH++RFC LYGGLDRV ++L V R VGK HQAGSDSLLT A
Sbjct: 192 FLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLLTWQA 251
Query: 251 FLKIKDKHFGNEYELQKYANVLHGLELL 278
F +++D +F E +K+A VL+GLE+
Sbjct: 252 FQRMRDLYF-VEDGAEKHAGVLYGLEVF 278
>sp|Q9LXM2|CAF1I_ARATH Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana
GN=CAF1-9 PE=2 SV=1
Length = 280
Score = 313 bits (802), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 166/283 (58%), Positives = 210/283 (74%), Gaps = 8/283 (2%)
Query: 1 MSDVPPPQPPKP---RILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSN 57
M+ + P + KP ++ REV+ NL SEFE I +ID YP ISMDTEFPGV+ + S+
Sbjct: 1 MAIIKPNRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFK--SD 58
Query: 58 IRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSG-STYYIWEFNFKDFDIAR 116
+R +P Y LKANVD L+LIQ+GLTLSD GNLPDLG +IWEFNF+DFD+AR
Sbjct: 59 LRFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVAR 118
Query: 117 HAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYL 176
AHA DS+ELL+RQGIDFE+N G++S RFAEL+MSSGLV N++V+WVTFHSAYDFGYL
Sbjct: 119 DAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYL 178
Query: 177 VKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCT-CLYGGLDRVCKALGVERVVG 235
+K LT+R LP L EF + V FGE+VYDVKH+++FC L+GGLDRV + L V R VG
Sbjct: 179 MKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVG 238
Query: 236 KSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGLELL 278
K HQAGSDSLLT HAF +++D +F + +K+A VL+GLE+
Sbjct: 239 KCHQAGSDSLLTWHAFQRMRDLYFVQDGP-EKHAGVLYGLEVF 280
>sp|Q9LEU4|CAF1J_ARATH Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis
thaliana GN=CAF1-10 PE=2 SV=1
Length = 277
Score = 280 bits (715), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 142/262 (54%), Positives = 193/262 (73%), Gaps = 6/262 (2%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
I+IREV+++NL+ EF IR ++D++ I+MDTEFPGVV++P + ++ + NY LK N
Sbjct: 10 IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDL-NYRTLKEN 68
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGID 133
VDLL LIQ+GLT SDE GNLP G+ + IW+FNF++F+I +A +S+ELL++ GID
Sbjct: 69 VDLLKLIQVGLTFSDENGNLPTCGT-DKFCIWQFNFREFNIGEDIYASESIELLRQCGID 127
Query: 134 FEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFV 193
F+KN E GID VRF EL+MSSG+VLN ++WVTFH YDFGYLVK LT + LP K ++F
Sbjct: 128 FKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFF 187
Query: 194 TRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLK 253
+ V+F VYD+KHL+ FC L+GGL+R+ + +GVER VG HQAGSDSLLTL +F K
Sbjct: 188 KLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRK 245
Query: 254 IKDKHFGNEYELQKYANVLHGL 275
+K+++F E KY VL+GL
Sbjct: 246 LKERYFPGSTE--KYTGVLYGL 265
>sp|Q9SKZ2|CAF1G_ARATH Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana
GN=CAF1-7 PE=2 SV=2
Length = 275
Score = 276 bits (705), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 140/262 (53%), Positives = 189/262 (72%), Gaps = 5/262 (1%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
I IREV+ NL SE IR ++D +P ++MDTEFPG+V RP + + +Y LK N
Sbjct: 10 IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFK-TNTEYHYETLKTN 68
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGID 133
V++L +IQ+GLT SDE+GNLP G+ + Y IW+FNF++FD+ +A DS+ELL++ GID
Sbjct: 69 VNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGID 128
Query: 134 FEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFV 193
F KN EFGIDS RFAELLMSSG+VLN++V WVTFHS YDFGYL+K LT + LPE + F
Sbjct: 129 FVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFF 188
Query: 194 TRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLK 253
+ V+F +VYD+KHL++FC L+GGL+++ + L VER VG HQAGSDSLLT F K
Sbjct: 189 EMISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRK 246
Query: 254 IKDKHFGNEYELQKYANVLHGL 275
+++ F ++KY+ VL+GL
Sbjct: 247 LQENFFIG--SMEKYSGVLYGL 266
>sp|Q9S9P2|CAF1B_ARATH Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana
GN=CAF1-2 PE=2 SV=1
Length = 286
Score = 268 bits (685), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 143/281 (50%), Positives = 190/281 (67%), Gaps = 10/281 (3%)
Query: 1 MSDVPPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVR-----PD 55
MS P P+ I IREV+ NL E I ID +P ++MDTEFPG+V + P+
Sbjct: 1 MSQAPNPEEEDDTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPN 60
Query: 56 SNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIA 115
N NY+ LKANV++L LIQ+GLTLSDE+GNLP G+ IW+FNF++F++
Sbjct: 61 PNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQC-IWQFNFREFNVI 119
Query: 116 RHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGY 175
ALDS+ELL++ ID EKN E G+D+ RFAELLM SG+VLN + WVTFH YDFGY
Sbjct: 120 SDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGY 179
Query: 176 LVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVG 235
L+K L+ + LPE++S+F ++ FF VYD+K+L+ FCT LYGGL+++ + LGV+R VG
Sbjct: 180 LLKLLSGKELPEEISDFFDQMEKFF-PVVYDIKYLMGFCTNLYGGLEKIAELLGVKR-VG 237
Query: 236 KSHQAGSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGLE 276
SHQAGSDSLLTL F+K+K+ F L KY+ L GL+
Sbjct: 238 ISHQAGSDSLLTLRTFIKMKEFFFTG--SLLKYSGFLFGLD 276
>sp|Q9SAI2|CAF1F_ARATH Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana
GN=CAF1-6 PE=2 SV=1
Length = 274
Score = 262 bits (670), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 139/262 (53%), Positives = 185/262 (70%), Gaps = 6/262 (2%)
Query: 14 ILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKAN 73
I IREV+ NL E + IR ++D +P ++MDTEFPG+VVRP + + +Y LK N
Sbjct: 10 IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFK-SNADYHYETLKTN 68
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGID 133
V++L +IQ+GLT S+E+GNLP G+ Y IW+FNF++FD+ ALDS+ELLK+ GID
Sbjct: 69 VNILKMIQLGLTFSNEQGNLPTCGT-DKYCIWQFNFREFDLDSDIFALDSIELLKQSGID 127
Query: 134 FEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFV 193
KN GIDS RFAELLMSSG+VLN++V WVTFHS YDFGYL+K LT + LP+ ++F
Sbjct: 128 LAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFF 187
Query: 194 TRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLK 253
+ V+F VYD+KHL++FC L+GGL+++ + L VER VG HQAGSDSLLT F K
Sbjct: 188 KLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRK 245
Query: 254 IKDKHFGNEYELQKYANVLHGL 275
+K+ F L KY+ VL+GL
Sbjct: 246 LKENFFVG--PLHKYSGVLYGL 265
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8
PE=1 SV=1
Length = 292
Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/270 (44%), Positives = 169/270 (62%), Gaps = 9/270 (3%)
Query: 6 PPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAA 65
P + +I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R
Sbjct: 2 PAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR-SSIDY 60
Query: 66 NYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVE 125
Y L+ NVDLL +IQ+GLT ++E+G P S W+FNFK F++ ++ DS++
Sbjct: 61 QYQLLRCNVDLLKIIQLGLTFTNEKGEYP-----SGINTWQFNFK-FNLTEDMYSQDSID 114
Query: 126 LLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVL 185
LL G+ F+K+ E GID++ FAELLM+SG+VL +V W++FHS YDFGY+VK LT L
Sbjct: 115 LLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRL 174
Query: 186 PEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSL 245
PE+ EF + +FF +YDVK+L++ C L GGL V L ++R +G+ HQAGSDSL
Sbjct: 175 PEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSL 232
Query: 246 LTLHAFLKIKDKHFGNEYELQKYANVLHGL 275
LT AF ++K+ F + + KY L+GL
Sbjct: 233 LTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8
PE=2 SV=1
Length = 292
Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 121/270 (44%), Positives = 169/270 (62%), Gaps = 9/270 (3%)
Query: 6 PPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAA 65
P + +I EV+ NL E +IR ++ Y I+MDTEFPGVVVRP R
Sbjct: 2 PAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFR-SSIDY 60
Query: 66 NYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVE 125
Y L+ NVDLL +IQ+GLT ++E+G P S W+FNFK F++ ++ DS++
Sbjct: 61 QYQLLRCNVDLLKIIQLGLTFTNEKGEYP-----SGINTWQFNFK-FNLTEDMYSQDSID 114
Query: 126 LLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVL 185
LL G+ F+K+ E GID++ FAELLM+SG+VL +V W++FHS YDFGY+VK LT L
Sbjct: 115 LLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRL 174
Query: 186 PEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSL 245
PE+ EF + +FF +YDVK+L++ C L GGL V L ++R +G+ HQAGSDSL
Sbjct: 175 PEEEHEFFHILNLFF-PSIYDVKYLMKSCKNLKGGLQEVADQLDLQR-IGRQHQAGSDSL 232
Query: 246 LTLHAFLKIKDKHFGNEYELQKYANVLHGL 275
LT AF ++K+ F + + KY L+GL
Sbjct: 233 LTGMAFFRMKELFFEDSIDDAKYCGRLYGL 262
>sp|O74856|CAF1_SCHPO Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=caf1 PE=1 SV=2
Length = 335
Score = 218 bits (554), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/260 (45%), Positives = 165/260 (63%), Gaps = 10/260 (3%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
IR+V+ NL E I +LI+RYP++SMDTEFPGVV RP + D +Y L+ANVD
Sbjct: 25 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSD-DYHYQTLRANVD 83
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFE 135
L +IQIGL LSDEEGN P W+FNF F++ +A +S+ELL + GIDF+
Sbjct: 84 SLKIIQIGLALSDEEGNAPVEAC-----TWQFNFT-FNLQDDMYAPESIELLTKSGIDFK 137
Query: 136 KNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 195
K++E GI+ FAELL+ SGLVL ++VTW+TFHS YDF YL+K +TQ LP + EF
Sbjct: 138 KHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKI 197
Query: 196 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 255
+ ++F K YD+K++++ GL + L + R +G HQAGSD+LLT F +I+
Sbjct: 198 LCIYF-PKNYDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQAGSDALLTARIFFEIR 255
Query: 256 DKHFGNEYELQKYANVLHGL 275
++F + + N L+GL
Sbjct: 256 SRYFDGSID-SRMLNQLYGL 274
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7
PE=1 SV=1
Length = 285
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 166/260 (63%), Gaps = 9/260 (3%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFE 135
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 KNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 195
K+ E GI++ FAELLM+SG+VL + V W++FHS YDFGYL+K LT LPE+ +F
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 196 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 255
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 256 DKHFGNEYELQKYANVLHGL 275
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7
PE=1 SV=3
Length = 285
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 166/260 (63%), Gaps = 9/260 (3%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFE 135
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 KNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 195
K+ E GI++ FAELLM+SG+VL + V W++FHS YDFGYL+K LT LPE+ +F
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 196 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 255
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 256 DKHFGNEYELQKYANVLHGL 275
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q5ZJV9|CNOT7_CHICK CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 166/260 (63%), Gaps = 9/260 (3%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFE 135
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 KNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 195
K+ E GI++ FAELLM+SG+VL + V W++FHS YDFGYL+K LT LPE+ +F
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 196 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 255
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 256 DKHFGNEYELQKYANVLHGL 275
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q3ZC01|CNOT7_BOVIN CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7
PE=2 SV=1
Length = 285
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 166/260 (63%), Gaps = 9/260 (3%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E ++IR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFE 135
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFK 124
Query: 136 KNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 195
K+ E GI++ FAELLM+SG+VL + V W++FHS YDFGYL+K LT LPE+ +F
Sbjct: 125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEI 184
Query: 196 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 255
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 256 DKHFGNEYELQKYANVLHGL 275
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q3KQ85|CNOT7_XENLA CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7
PE=2 SV=1
Length = 285
Score = 214 bits (545), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 120/260 (46%), Positives = 164/260 (63%), Gaps = 9/260 (3%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL + +RIR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFE 135
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFK 124
Query: 136 KNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 195
K+ E GI++ FAEL M+SG+VL + V W++FHS YDFGYL+K LT LPE +F
Sbjct: 125 KHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEI 184
Query: 196 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 255
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 256 DKHFGNEYELQKYANVLHGL 275
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q08BM8|CNOT7_DANRE CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7
PE=2 SV=1
Length = 286
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/260 (45%), Positives = 166/260 (63%), Gaps = 9/260 (3%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL E +RIR + ++ I+MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFE 135
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+
Sbjct: 71 LLKIIQLGLTFMNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFK 124
Query: 136 KNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 195
K+ E GI+++ FAELLM+SG+VL + V W++FHS YDFGYL+K L+ LP++ +F
Sbjct: 125 KHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEI 184
Query: 196 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 255
+ +FF +YDVK+L++ C L GGL V + L +ER +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PIIYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 256 DKHFGNEYELQKYANVLHGL 275
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|A4II96|CNOT7_XENTR CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis
GN=cnot7 PE=2 SV=1
Length = 285
Score = 211 bits (537), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/260 (45%), Positives = 164/260 (63%), Gaps = 9/260 (3%)
Query: 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVD 75
I EV+ NL + +RIR +I +Y ++MDTEFPGVV RP R + Y L+ NVD
Sbjct: 12 ICEVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVVARPIGEFR-SNADYQYQLLRCNVD 70
Query: 76 LLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFE 135
LL +IQ+GLT +E+G P S W+FNFK F++ +A DS+ELL GI F+
Sbjct: 71 LLKIIQLGLTFVNEQGEYPPGTS-----TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFK 124
Query: 136 KNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTR 195
K+ E GI++ FAEL M+SG+VL + V W++FHS YDFGYL+K LT LPE +F
Sbjct: 125 KHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEI 184
Query: 196 VGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIK 255
+ +FF +YDVK+L++ C L GGL V + L ++R +G HQAGSDSLLT AF K++
Sbjct: 185 LRLFF-PVIYDVKYLMKSCKNLKGGLQEVAEQLELKR-IGPQHQAGSDSLLTGMAFFKMR 242
Query: 256 DKHFGNEYELQKYANVLHGL 275
+ F + + KY L+GL
Sbjct: 243 EMFFEDHIDDAKYCGHLYGL 262
>sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans
GN=ccf-1 PE=2 SV=1
Length = 310
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/256 (41%), Positives = 149/256 (58%), Gaps = 13/256 (5%)
Query: 12 PRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLK 71
P + I V+ N+ EF RIR ++ YP ++MDTEFPGVV P R ++ NY +
Sbjct: 19 PEVKIHNVYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATPLGTFRSKE-DFNYQQVF 77
Query: 72 ANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQG 131
NV++L LIQ+G + +++G LP G +W+FNF +F A + +SVE+L++ G
Sbjct: 78 CNVNMLKLIQVGFAMVNDKGELPPTGD-----VWQFNF-NFSFAEDMFSHESVEMLRQAG 131
Query: 132 IDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSE 191
IDF + GI + F ELL +SGL+ + +TW+TF S YDFGYL+K +T LP++ S
Sbjct: 132 IDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEEST 191
Query: 192 FVTRVGVFFGEKVYDVKHLIRFCTC----LYGGLDRVCKALGVERVVGKSHQAGSDSLLT 247
F F +D+K L+R C L GGL V L V+R G HQAGSD+LLT
Sbjct: 192 FFMCHKTLF-PTSFDIKILLRTPNCASAKLKGGLQEVADQLDVKR-QGVRHQAGSDALLT 249
Query: 248 LHAFLKIKDKHFGNEY 263
F KIK + FG+ +
Sbjct: 250 AATFFKIKKQFFGDNW 265
>sp|P39008|POP2_YEAST Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=POP2 PE=1 SV=2
Length = 433
Score = 162 bits (410), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 151/286 (52%), Gaps = 26/286 (9%)
Query: 9 PPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYN 68
PP + +R+V++ NL SEF IR L+ +Y +S+ TEF G + RP R + +Y
Sbjct: 153 PPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKV-DYHYQ 211
Query: 69 GLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLK 128
++ANVD LN IQ+GL+LSD GN PD G + W+FNF +FD + + +S+ELL+
Sbjct: 212 TMRANVDFLNPIQLGLSLSDANGNKPDNGPST----WQFNF-EFDPKKEIMSTESLELLR 266
Query: 129 RQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEK 188
+ GI+FEK+ GID F++LLM SGL+++ VTW+T+H+AYD G+L+ L +P
Sbjct: 267 KSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNN 326
Query: 189 LSEFVTRVGVFFGEKVYDVKHLIRFCTCLYG---------------GLDRVCKALGVERV 233
+F V + YD+ + + L + LG+ R
Sbjct: 327 KEDFEWWVHQYM-PNFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPRF 385
Query: 234 VGKSHQAGSDSLLTLHAFL---KIKDKHFGNEYELQKYANVLHGLE 276
+ G SLL L +F K+ F N + KY V++G++
Sbjct: 386 SIFT-TTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGID 430
>sp|Q9SHJ0|CAF1A_ARATH Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana
GN=CAF1-1 PE=2 SV=1
Length = 360
Score = 137 bits (346), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 133/247 (53%), Gaps = 22/247 (8%)
Query: 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAAN--YNGLKA 72
L R V+ N+ E R+ + R+P+I+ DTE+PG++ R + D +++ Y +K
Sbjct: 8 LARRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFR-----TYFDSSSDECYRAMKG 62
Query: 73 NVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGI 132
NV+ LIQ G TL + +G ++G +WE NF +F S+E L+R G+
Sbjct: 63 NVENTKLIQCGFTLFNAKG---EIGG-----VWEINFSNFGDPSDTRNELSIEFLRRHGL 114
Query: 133 DFEKNREFGID--SVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLS 190
D +K R+ G+D F LM+ K V +VTF AYDF Y + L LPE
Sbjct: 115 DLQKIRDEGVDMFGYGFFPKLMTV-FRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHG 173
Query: 191 EFVTRVGVFFGEKVYDVKHLIRFCTCL--YGGLDRVCKALGVERVVGKSHQAGSDSLLTL 248
EF T V FG+ VYD K + FC L + GL ++ + L + R VG++H AGSDSL+T
Sbjct: 174 EFATEVVKVFGQ-VYDTKVMAGFCEGLGEHLGLSKLAQLLQITR-VGRAHHAGSDSLMTA 231
Query: 249 HAFLKIK 255
F+K+K
Sbjct: 232 LVFIKLK 238
>sp|O64773|CAF1E_ARATH Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana
GN=CAF1-5 PE=2 SV=1
Length = 278
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 93/246 (37%), Positives = 124/246 (50%), Gaps = 30/246 (12%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVV----VRPDSNIRHRDPAANYNGLKAN 73
EV+ +N +E IR + I++DTEFPG + + IR+RD +K N
Sbjct: 4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRD-------MKFN 56
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGID 133
VD +LIQ+GLTL G G T WE N DF+ ++ S+ LK G+D
Sbjct: 57 VDNTHLIQLGLTL---------FGKGITK-TWEINLSDFNESKSLKNDKSIAFLKNNGLD 106
Query: 134 FEKNREFGIDSVRFAELLMSSGLVLNKD---VTWVTFHSAYDFGYLVKCLTQRVLPEKLS 190
+K RE GI E M +LN+ + WVTF +YD YL+K LT++ LPE
Sbjct: 107 LDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSK 163
Query: 191 EFVTRVGVFFGEKVYDVKHLIRFCTCLYG--GLDRVCKALGVERVVGKSHQAGSDSLLTL 248
EF V G VYDVK + C+ L GL R+ L + R VGK+H AGSDS LT
Sbjct: 164 EFDETVQQLLGRFVYDVKKMAGLCSGLSSRFGLQRIADVLQMRR-VGKAHHAGSDSELTA 222
Query: 249 HAFLKI 254
F K+
Sbjct: 223 RVFTKL 228
>sp|Q9SFX6|CAF1C_ARATH Putative CCR4-associated factor 1 homolog 3 OS=Arabidopsis thaliana
GN=CAF1-3 PE=1 SV=1
Length = 310
Score = 121 bits (304), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/246 (36%), Positives = 121/246 (49%), Gaps = 28/246 (11%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVV----VRPDSNIRHRDPAANYNGLKAN 73
EV+ +N E IR + I++DTEFPG + + IR+RD +K N
Sbjct: 8 EVWRWNKEVEMNSIRDCLKHCSSIAIDTEFPGCLKETPMDASEEIRYRD-------MKFN 60
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGID 133
VD +LIQ+G TL D G WE N DFD + S+ LK G++
Sbjct: 61 VDNTHLIQLGFTLFDRRGFAK---------TWEINLSDFDEHKCFKNDKSIAFLKSNGLN 111
Query: 134 FEKNREFGIDSVRFAELLMSSGLVLNKD--VTWVTFHSAYDFGYLVKCLT-QRVLPEKLS 190
+K RE GI F S ++ KD +TWV F +YD YLVK LT + LPE
Sbjct: 112 LDKIREEGIGIDEFFRDF--SQILTEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKE 169
Query: 191 EFVTRVGVFFGEKVYDVKHLIRFCTCLYG--GLDRVCKALGVERVVGKSHQAGSDSLLTL 248
EF V G+ V+DVK + C+ L GL R+ L ++R VGK+H AGSDS LT
Sbjct: 170 EFHETVQQLLGKFVFDVKKIAESCSGLSSQFGLQRIADVLQMKR-VGKAHHAGSDSELTA 228
Query: 249 HAFLKI 254
F K+
Sbjct: 229 RVFTKL 234
>sp|Q9C6M9|CAF1D_ARATH Putative CCR4-associated factor 1 homolog 4 OS=Arabidopsis thaliana
GN=CAF1-4 PE=1 SV=1
Length = 302
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 89/246 (36%), Positives = 122/246 (49%), Gaps = 28/246 (11%)
Query: 18 EVFEFNLISEFERIRALIDRYPIISMDTEFPGVV----VRPDSNIRHRDPAANYNGLKAN 73
EV+ +N E + IR + + I++DTEFPG + + IR+RD +K N
Sbjct: 3 EVWRWNKEVEMDSIRDCLKHFSSIAIDTEFPGCLKETPMDASEEIRYRD-------MKFN 55
Query: 74 VDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGID 133
VD +LIQ+G TL D G WE N DF+ + S+ LK G++
Sbjct: 56 VDNTHLIQLGFTLFDRRG---------ITKTWEINLSDFNEHKCFKNDKSIAFLKSNGLN 106
Query: 134 FEKNREFGIDSVRFAELLMSSGLVLNKD--VTWVTFHSAYDFGYLVKCLT-QRVLPEKLS 190
+K E GI F S ++ KD +TWV F +YD YLVK LT + LPE
Sbjct: 107 LDKIGEEGIGIEEFFRDF--SQILKEKDGKITWVNFQGSYDNAYLVKGLTGGKPLPETKE 164
Query: 191 EFVTRVGVFFGEKVYDVKHLIRFCTCLYG--GLDRVCKALGVERVVGKSHQAGSDSLLTL 248
EF V G+ V+DVK + C+ L GL R+ L ++R VGK+H AGSDS LT
Sbjct: 165 EFHETVEQLLGKFVFDVKKIAESCSGLSSRFGLQRIADVLQMKR-VGKAHHAGSDSELTA 223
Query: 249 HAFLKI 254
F K+
Sbjct: 224 RVFTKL 229
>sp|Q9LXM4|CAF1H_ARATH Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana
GN=CAF1-8 PE=3 SV=1
Length = 239
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 105/219 (47%), Gaps = 16/219 (7%)
Query: 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLG 97
Y I++DTEFP + +H Y + +VD LIQ+GLTL D G +
Sbjct: 11 YRFIAIDTEFPSTL---RETTQHATDEERYMDMSFSVDRAKLIQLGLTLFDINGRI---- 63
Query: 98 SGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLV 157
G T WE NF DF + A S+E L+R G+D K RE GI F +
Sbjct: 64 -GGT---WEINFSDFGVD-DARNEKSIEFLRRNGLDLRKIREEGIRIEGFFSEMFWMLKK 118
Query: 158 LNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCL 217
+++TWVTFH +YD YL+K T LP F V G VYD+K + C L
Sbjct: 119 TRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSKAVARVLG-SVYDLKVMAGRCEGL 177
Query: 218 YG--GLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 254
GL+ + G+ R VG +H AGS++ LT F K+
Sbjct: 178 SSRLGLETLAHEFGLNR-VGTAHHAGSNNELTAMVFAKV 215
>sp|Q9HN74|DLDH_HALSA Dihydrolipoyl dehydrogenase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=lpdA PE=3 SV=1
Length = 474
Score = 35.4 bits (80), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 22/108 (20%)
Query: 158 LNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGV-----------FFGEKVYD 206
L DVT V + Y CL +P K +T GV + + D
Sbjct: 31 LGLDVTLVEKDA-----YGGTCLNYGCIPSKA--MITASGVAHEAGHAEEMGVYADPDVD 83
Query: 207 VKHLIRF----CTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHA 250
V ++ + L GG++++CKA GV + G++ AGSD L +H
Sbjct: 84 VAEMVDWKDGVVDQLTGGVEKLCKANGVNLIEGRAEFAGSDKLRVVHG 131
>sp|Q8Y210|LNT_RALSO Apolipoprotein N-acyltransferase OS=Ralstonia solanacearum (strain
GMI1000) GN=lnt PE=3 SV=1
Length = 523
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 27 EFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTL 86
+ R+RAL P++ VVRPD +++ R P L+A+V + GLT
Sbjct: 438 QISRMRALESGRPMLRATNTGATAVVRPDGSVQARLPVFTLGTLQADVQGMQ----GLTP 493
Query: 87 SDEEGNLP 94
GN P
Sbjct: 494 FVRTGNAP 501
>sp|Q89AP6|APBE_BUCBP Probable thiamine biosynthesis protein ApbE OS=Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp) GN=apbE PE=3 SV=1
Length = 341
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 71 KANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEF----------NFKDFDIARHAHA 120
K N +L LI IGL + + NL D+ SG+ IW F + K +A+
Sbjct: 92 KINKNLAKLISIGLLVGKKTNNLLDITSGTLINIWGFGPTSRKHSIPSKKTIKLAQMLTG 151
Query: 121 LDSVELL 127
L+ ++LL
Sbjct: 152 LNHIKLL 158
>sp|Q18286|EXOC6_CAEEL Exocyst complex component 6 OS=Caenorhabditis elegans GN=sec-15
PE=3 SV=4
Length = 817
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 141 GID----SVRFAELLMSSGLVLNKDVTWVTFHSAY---DFGYL-VKCLTQRVLPEKLSEF 192
G+D S+ FA+L LV++ D W TF++ Y YL VK T V+ EK+ EF
Sbjct: 729 GVDPQTLSMTFADLRQLLDLVMSSD--WTTFNAEYGKDHAKYLRVKASTAIVVLEKMIEF 786
Query: 193 VTRVGVFFGEKVYDVKHLI 211
+ FFG D K L+
Sbjct: 787 ERKSTGFFGIAKGDRKKLL 805
>sp|O51055|Y024_BORBU Uncharacterized protein BB_0024 OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=BB_0024
PE=4 SV=1
Length = 379
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 18/105 (17%)
Query: 68 NGLKANVDLLNLIQI--GLTLSDEEGNLPDLGSGSTY-YIWEFNFKDFDIARHAHALDSV 124
NG K + L N I+ G+T SD++GN+ +GSGST+ Y N K + IA+
Sbjct: 37 NGFKVEIFLNNTIEKPRGIT-SDQDGNI-FIGSGSTFAYFVTKNRKIYTIAK-------- 86
Query: 125 ELLKRQGIDFEKNREF--GIDSVRFAELL---MSSGLVLNKDVTW 164
L K GID+ N+ + +D + + + ++ + +KD TW
Sbjct: 87 TLQKPIGIDYWDNKLYISSVDKIYVVKNVKEEINKSIKSHKDYTW 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.142 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,597,329
Number of Sequences: 539616
Number of extensions: 4864187
Number of successful extensions: 11906
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11797
Number of HSP's gapped (non-prelim): 31
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)